Pregenerated sensors for APOF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047631Ensembl transcript IDs: ENSMUST00000050901.5, ENSMUST00000238970.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCATTACTGGCAAGCGATaGCAGTATCCCAAACCATCC | + |
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Preference number: 2 (lower is better) Translates to: ITLFNFYNHLFRWKLASPITGKR*QYPKPS Trigger: GGATGGTTTGGGATACTGTCATCGCTTGCCAGTAAT...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| 3UTR TCA 72 bp | AATCTAAGTTTCAAGAAGGAAATTACTGGCAAGCGATaGCAGTATCCCAAACCATCCACCCACCCATCCATC | + |
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Preference number: 3 (lower is better) Translates to: NLSFKKEITGKR*QYPKPSTHPSI Trigger: GATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCCTTCTTGAAACTTAGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCAAGAAGGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCATCTACACTTCTCTaGTCAGAATTTTCCACTTAT | + |
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Preference number: 3 (lower is better) Translates to: FQEGNYWQAMTVSQTIHPPSTLL*SEFSTY Trigger: ATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGG...TGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCCTTCTTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| 3UTR-3UTR CAA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCCCATCTACACTTCTCTaGTCAGAATTTTCCACTTAT | + |
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Preference number: 3 (lower is better) Translates to: ITLFNFYNHLFRWKLASPPSTLL*SEFSTY Trigger: ATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGG...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 38% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | AAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATCCAGCCAGGCAGGGACTTaGGGAGCAGCATCTGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: KLLASDDSIPNHPPTHPSSQAGT*GAASGR Trigger: CCTGCCAGATGCTGCTCCCCAAGTCCCTGCCTGGCT...GGATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | AAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATCCCAGGGGGCATGTAAGTaGAGCCAGGCAGGGACTTGG | + |
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Preference number: 4 (lower is better) Translates to: KLLASDDSIPNHPPTHPSQGACK*SQAGTW Trigger: CCAAGTCCCTGCCTGGCTTCACTTACATGCCCCCTG...GGATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | TTTCAAGAAGGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCAACCAGCTGGGCCCCCTaGCGCGCCTACCATGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: FQEGNYWQAMTVSQTIHPTSWAP*RAYHGH Trigger: ATGGCCATGGTAGGCGCGTCAGGGGGCCCAGCTGGT...TGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCCTTCTTGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | GGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATACGTTTGGCCCTCTTTaGACCTGGCTGCTCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: GNYWQAMTVSQTIHPPIHTFGPL*TWLLPG Trigger: GCCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGT...ATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | GGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATATGGGTGGTCACCTCTaGCTGAGGGGTGGTCACCTC | + |
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Preference number: 4 (lower is better) Translates to: GNYWQAMTVSQTIHPPIHMGGHL*LRGGHL Trigger: GAGGTGACCACCCCTCAGCCAGAGGTGACCACCCAT...ATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | GGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATGCAAAGCAGCTGGATTaGCATCAGGATGAGTCGGAG | + |
|
Preference number: 4 (lower is better) Translates to: GNYWQAMTVSQTIHPPIHAKQLD*HQDESE Trigger: CTCCGACTCATCCTGATGTCAATCCAGCTGCTTTGC...ATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | TTTCAAGAAGGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACAGGGGGCATGTAAGTaGAGCCAGGCAGGGACTTGG | + |
|
Preference number: 4 (lower is better) Translates to: FQEGNYWQAMTVSQTIHPQGACK*SQAGTW Trigger: CCAAGTCCCTGCCTGGCTTCACTTACATGCCCCCTG...TGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCCTTCTTGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCACCAGCTGGGCCCCCTaGCGCGCCTACCATGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: ITLFNFYNHLFRWKLASPTSWAP*RAYHGH Trigger: ATGGCCATGGTAGGCGCGTCAGGGGGCCCAGCTGGT...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | AAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATCCCCTCTGGCTGAGGGGTaGTCACCTCTTTCTCATCAT | + |
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Preference number: 4 (lower is better) Translates to: KLLASDDSIPNHPPTHPSPLAEG*SPLSHH Trigger: ATGATGAGAAAGAGGTGACCACCCCTCAGCCAGAGG...GGATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | TTTCAAGAAGGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCAGGTTGCCTCTCCGTGTaGAGTGGCATCCACAGGACA | + |
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Preference number: 4 (lower is better) Translates to: FQEGNYWQAMTVSQTIHPGCLSV*SGIHRT Trigger: TGTCCTGTGGATGCCACTTCACACGGAGAGGCAACC...TGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCCTTCTTGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | AATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATCCATCTGAGGTCTGCATCTaGTATCCCAACTTCGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: NYWQAMTVSQTIHPPIHPSEVCI*YPNFEG Trigger: TCCCTCGAAGTTGGGATACCAGATGCAGACCTCAGA...TGGATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | CCACCCATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTACTGGATCAGCCGCTaGACCCCAGCCTTCATCGCT | + |
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Preference number: 4 (lower is better) Translates to: PPIHPSTLLLSEFSTYWLYWISR*TPAFIA Trigger: AGCGATGAAGGCTGGGGTTCAGCGGCTGATCCAGTA...CAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATGGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | ACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCATTAGCCAGGCAGGGACTTaGGGAGCAGCATCTGGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: TLFNFYNHLFRWKLASPISQAGT*GAASGR Trigger: CCTGCCAGATGCTGCTCCCCAAGTCCCTGCCTGGCT...AATGGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | CCACCCATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGGGACAAGGGCTTGTCTaGGGTCTGCATCTGGTATCC | + |
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Preference number: 4 (lower is better) Translates to: PPIHPSTLLLSEFSTYWLGQGLV*GLHLVS Trigger: GGATACCAGATGCAGACCTCAGACAAGCCCTTGTCC...CAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATGGGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | TTTCAAGAAGGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCTCTGGCTGAGGGGTaGTCACCTCTTTCTCATCAT | + |
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Preference number: 4 (lower is better) Translates to: FQEGNYWQAMTVSQTIHPPLAEG*SPLSHH Trigger: ATGATGAGAAAGAGGTGACCACCCCTCAGCCAGAGG...TGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCCTTCTTGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | ACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCATTGGTTGCCTCTCCGTGTaGAGTGGCATCCACAGGACA | + |
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Preference number: 4 (lower is better) Translates to: TLFNFYNHLFRWKLASPIGCLSV*SGIHRT Trigger: TGTCCTGTGGATGCCACTTCACACGGAGAGGCAACC...AATGGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | ACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCATTTACTGGATCAGCCGCTaGACCCCAGCCTTCATCGCT | + |
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Preference number: 4 (lower is better) Translates to: TLFNFYNHLFRWKLASPIYWISR*TPAFIA Trigger: AGCGATGAAGGCTGGGGTTCAGCGGCTGATCCAGTA...AATGGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR GCA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCTCCCAGGCTAAGAGCTaGAGAGCAGAGGACAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: ITLFNFYNHLFRWKLASPSQAKS*RAEDRA Trigger: TGCCCTGTCCTCTGCTCTGCAGCTCTTAGCCTGGGA...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | CATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTTTGACGTTTGGCCCTCTTTaGACCTGGCTGCTCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: HPSIYTSLVRIFHLLVVLTFGPL*TWLLPG Trigger: GCCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGT...CAAAACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR GCA 90 bp | CATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTTTGTCCCAGGCTAAGAGCTaGAGAGCAGAGGACAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: HPSIYTSLVRIFHLLVVLSQAKS*RAEDRA Trigger: TGCCCTGTCCTCTGCTCTGCAGCTCTTAGCCTGGGA...CAAAACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCCTCTTCTGGAGCTCCTaGAGATGGTGGATGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: ITLFNFYNHLFRWKLASPLFWSS*RWWMRA Trigger: AGCCCTCATCCACCATCTCCAGGAGCTCCAGAAGAG...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | TCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTTTGTTATGGGTGGTCACCTCTaGCTGAGGGGTGGTCACCTC | + |
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Preference number: 4 (lower is better) Translates to: SIHLHFSCQNFPLIGCFVMGGHL*LRGGHL Trigger: GAGGTGACCACCCCTCAGCCAGAGGTGACCACCCAT...AACAAAACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | ACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCATTGCAAAGCAGCTGGATTaGCATCAGGATGAGTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: TLFNFYNHLFRWKLASPIAKQLD*HQDESE Trigger: CTCCGACTCATCCTGATGTCAATCCAGCTGCTTTGC...AATGGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | GGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATTGTACTTTCAACTTCTaGCACAAAATTAGACATGGC | + |
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Preference number: 4 (lower is better) Translates to: GNYWQAMTVSQTIHPPIHCTFNF*HKIRHG Trigger: GCCATGTCTAATTTTGTGTCAGAAGTTGAAAGTACA...ATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | CACCCATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTCTGAGGTCTGCATCTaGTATCCCAACTTCGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: HPSIHLHFSCQNFPLIGCSEVCI*YPNFEG Trigger: TCCCTCGAAGTTGGGATACCAGATGCAGACCTCAGA...ACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATGGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCCTCGACCTCGTTCCTTaGCCTTGTCAGAGCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: ITLFNFYNHLFRWKLASPLDLVP*PCQSSS Trigger: AGAACTGCTCTGACAAGGCCAAGGAACGAGGTCGAG...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | ACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCATTCTCGACCTCGTTCCTTaGCCTTGTCAGAGCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: TLFNFYNHLFRWKLASPILDLVP*PCQSSS Trigger: AGAACTGCTCTGACAAGGCCAAGGAACGAGGTCGAG...AATGGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR GCA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCGGCTTGTCTGAGGTCTaGATCTGGTATCCCAACTTC | + |
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Preference number: 4 (lower is better) Translates to: ITLFNFYNHLFRWKLASPGLSEV*IWYPNF Trigger: GAAGTTGGGATACCAGATGCAGACCTCAGACAAGCC...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR GCA 90 bp | CACCCATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTCTAGGTTGTAGTAGGTaGCTACTGCTGGTAGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: HPSIHLHFSCQNFPLIGCLGCSR*LLLVVG Trigger: ACCTACTACCAGCAGTAGGCACCTACTACAACCTAG...ACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATGGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCCATAACCCAGATCTATaGCCCCATCTCGACCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: ITLFNFYNHLFRWKLASPHNPDL*PHLDLV Trigger: AACGAGGTCGAGATGGGGCCATAGATCTGGGTTATG...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CCA 90 bp | CATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTTTGCATAACCCAGATCTATaGCCCCATCTCGACCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: HPSIYTSLVRIFHLLVVLHNPDL*PHLDLV Trigger: AACGAGGTCGAGATGGGGCCATAGATCTGGGTTATG...CAAAACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR GCA 90 bp | TCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTTTGTTGGCTTGTCTGAGGTCTaGATCTGGTATCCCAACTTC | + |
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Preference number: 4 (lower is better) Translates to: SIHLHFSCQNFPLIGCFVGLSEV*IWYPNF Trigger: GAAGTTGGGATACCAGATGCAGACCTCAGACAAGCC...AACAAAACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR GCA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCCGTAATACAAAGCTGTaGCTAGGTTGTAGTAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: ITLFNFYNHLFRWKLASPRNTKL*LGCSRC Trigger: GCACCTACTACAACCTAGGCACAGCTTTGTATTACG...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR GCA 90 bp | CATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTTTGCGTAATACAAAGCTGTaGCTAGGTTGTAGTAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: HPSIYTSLVRIFHLLVVLRNTKL*LGCSRC Trigger: GCACCTACTACAACCTAGGCACAGCTTTGTATTACG...CAAAACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR TCA 90 bp | CACCCATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTGTACTTTCAACTTCTaGCACAAAATTAGACATGGC | + |
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Preference number: 4 (lower is better) Translates to: HPSIHLHFSCQNFPLIGCCTFNF*HKIRHG Trigger: GCCATGTCTAATTTTGTGTCAGAAGTTGAAAGTACA...ACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATGGGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS GCA 90 bp | GAACGTTTGGCCCTCTTTGGACCTGGCTGCTCCCAGGCTAAGAGCTaGAGAGCAGAGGACAGGGCATCCACAGACACTTCCCGGTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: ERLALFGPGCSQAKS*RAEDRASTDTSRSV Trigger: CACAGACCGGGAAGTGTCTGTGGATGCCCTGTCCTCTGCTCTGCAGCTCTTAGCCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS TCA 90 bp | CGCTGGCTTAAGAGCAGCCGTGATCACCGCACCAGCTGGGCCCCCTaGCGCGCCTACCATGGCCATCAAGAGATCATAACCCAGATCTAT | + |
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Preference number: 5 (lower is better) Translates to: RWLKSSRDHRTSWAP*RAYHGHQEIITQIY Trigger: ATAGATCTGGGTTATGATCTCTTGATGGCCATGGTAGGCGCGTCAGGGGGCCCAGCTGGTGCGGTGATCACGGCTGCTCTTAAGCCAGCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS TCA 90 bp | CTTCGAGGGAGGGAGCACCGTAGAGACACTGGTTGCCTCTCCGTGTaGAGTGGCATCCACAGGACACAGCAGGAGATAGCAAAGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: LRGREHRRDTGCLSV*SGIHRTQQEIAKQL Trigger: CAGCTGCTTTGCTATCTCCTGCTGTGTCCTGTGGATGCCACTTCACACGGAGAGGCAACCAGTGTCTCTACGGTGCTCCCTCCCTCGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 90 bp | GGGAGCAGCATCTGGCAGGACAAGGGCTTGTCTGAGGTCTGCATCTaGTATCCCAACTTCGAGGGAGGGAGCACCGTAGAGACACTGGTT | + |
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Preference number: 5 (lower is better) Translates to: GSSIWQDKGLSEVCI*YPNFEGGSTVETLV Trigger: AACCAGTGTCTCTACGGTGCTCCCTCCCTCGAAGTTGGGATACCAGATGCAGACCTCAGACAAGCCCTTGTCCTGCCAGATGCTGCTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 90 bp | TCCACAGACACTTCCCGGTCTGTGTGTCCACTCTTCTGGAGCTCCTaGAGATGGTGGATGAGGGCTTGTGTAGCCTCCACACCTCCTAAT | + |
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Preference number: 5 (lower is better) Translates to: STDTSRSVCPLFWSS*RWWMRACVASTPPN Trigger: ATTAGGAGGTGTGGAGGCTACACAAGCCCTCATCCACCATCTCCAGGAGCTCCAGAAGAGTGGACACACAGACCGGGAAGTGTCTGTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CAA 90 bp | AAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATCCAAGCCAGGCAGGGACTaGGGGAGCAGCATCTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: KLLASDDSIPNHPPTHPSKPGRD*GSSIWQ Trigger: CTGCCAGATGCTGCTCCCCAAGTCCCTGCCTGGCTT...GGATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 90 bp | CTGACGCGCCTACCATGGCCATCAAGAGATCATAACCCAGATCTATaGCCCCATCTCGACCTCGTTCCTTGGCCTTGTCAGAGCAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: LTRLPWPSRDHNPDL*PHLDLVPWPCQSSS Trigger: AGAACTGCTCTGACAAGGCCAAGGAACGAGGTCGAGATGGGGCCATAGATCTGGGTTATGATCTCTTGATGGCCATGGTAGGCGCGTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS TCA 90 bp | CAGGACACAGCAGGAGATAGCAAAGCAGCTGGATTGACATCAGGATaGGTCGGAGGCTATGCATGTCAGGAGCTGAGCACCCATACAGTC | + |
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Preference number: 5 (lower is better) Translates to: QDTAGDSKAAGLTSG*VGGYACQELSTHTV Trigger: GACTGTATGGGTGCTCAGCTCCTGACATGCATAGCCTCCGACTCATCCTGATGTCAATCCAGCTGCTTTGCTATCTCCTGCTGTGTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238970.2 |
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| CDS CCA 90 bp | TCTGTTCCTGATCATTGTCGCAGTCTGTGTTGGAAATCGAACGTTTaGCCCTCTTTGGACCTGGCTGCTCCCAGGCTAAGAGCTGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: SVPDHCRSLCWKSNV*PSLDLAAPRLRAAE Trigger: CTCTGCAGCTCTTAGCCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGTTCGATTTCCAACACAGACTGCGACAATGATCAGGAACAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 90 bp | CCTTTCCGGTCTCTGGCTGATGGGTGGTCACCTCTGGCTGAGGGGTaGTCACCTCTTTCTCATCATAATAATACTGGATCAGCCGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: PFRSLADGWSPLAEG*SPLSHHNNTGSAAE Trigger: TTCAGCGGCTGATCCAGTATTATTATGATGAGAAAGAGGTGACCACCCCTCAGCCAGAGGTGACCACCCATCAGCCAGAGACCGGAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 90 bp | TGTGGTGGCATCCTTTCCGGTCTCTGGCTGATGGGTGGTCACCTCTaGCTGAGGGGTGGTCACCTCTTTCTCATCATAATAATACTGGAT | + |
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Preference number: 5 (lower is better) Translates to: CGGILSGLWLMGGHL*LRGGHLFLIIIILD Trigger: ATCCAGTATTATTATGATGAGAAAGAGGTGACCACCCCTCAGCCAGAGGTGACCACCCATCAGCCAGAGACCGGAAAGGATGCCACCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CAA 90 bp | AATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCACCCATCCATCCATTGGAAATCGAACGTTaGGCCCTCTTTGGACCTGGC | + |
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Preference number: 5 (lower is better) Translates to: NYWQAMTVSQTIHPPIHPLEIER*ALFGPG Trigger: GCCAGGTCCAAAGAGGGCCAAACGTTCGATTTCCAA...TGGATGGATGGGTGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CAA 90 bp | CACCCATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTAAGCCAGGCAGGGACTaGGGGAGCAGCATCTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: HPSIHLHFSCQNFPLIGCKPGRD*GSSIWQ Trigger: CTGCCAGATGCTGCTCCCCAAGTCCCTGCCTGGCTT...ACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATGGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CAA 90 bp | CACCCATCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTGGCAGGACAAGGGCTaGTCTGAGGTCTGCATCTGG | + |
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Preference number: 5 (lower is better) Translates to: HPSIHLHFSCQNFPLIGCWQDKG*SEVCIW Trigger: CCAGATGCAGACCTCAGACAAGCCCTTGTCCTGCCA...ACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGATGGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CAA 90 bp | ACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCATTAACGTTTGGCCCTCTTaGGACCTGGCTGCTCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: TLFNFYNHLFRWKLASPINVWPS*DLAAPR Trigger: CCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGTT...AATGGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CAA 90 bp | TTTCAAGAAGGAAATTACTGGCAAGCGATGACAGTATCCCAAACCATCCACCCATTGGAAATCGAACGTTaGGCCCTCTTTGGACCTGGC | + |
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Preference number: 5 (lower is better) Translates to: FQEGNYWQAMTVSQTIHPLEIER*ALFGPG Trigger: GCCAGGTCCAAAGAGGGCCAAACGTTCGATTTCCAA...TGGGTGGATGGTTTGGGATACTGTCATCGCTTGCCAGTAATTTCCTTCTTGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CAA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCTGGCAGGACAAGGGCTaGTCTGAGGTCTGCATCTGG | + |
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Preference number: 5 (lower is better) Translates to: ITLFNFYNHLFRWKLASPWQDKG*SEVCIW Trigger: CCAGATGCAGACCTCAGACAAGCCCTTGTCCTGCCA...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CAA 90 bp | ATAACGCTTTTTAATTTCTATAATCACTTGTTCAGGTGGAAGTTAGCCAGCCCCATGGTGGATGAGGGCTaGTGTAGCCTCCACACCTCC | + |
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Preference number: 5 (lower is better) Translates to: ITLFNFYNHLFRWKLASPMVDEG*CSLHTS Trigger: GGAGGTGTGGAGGCTACACAAGCCCTCATCCACCAT...GGGGCTGGCTAACTTCCACCTGAACAAGTGATTATAGAAATTAAAAAGCGTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS-3UTR CAA 90 bp | TCCATCCATCTACACTTCTCTTGTCAGAATTTTCCACTTATTGGTTGTTTTGTTAACGTTTGGCCCTCTTaGGACCTGGCTGCTCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: SIHLHFSCQNFPLIGCFVNVWPS*DLAAPR Trigger: CCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGTT...AACAAAACAACCAATAAGTGGAAAATTCTGACAAGAGAAGTGTAGATGGATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 72 bp | TCACCGCACCAGCTGGGCCCCCTGACGCGCCTACCATaGCCATCAAGAGATCATAACCCAGATCTATGGCCC | + |
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Preference number: 6 (lower is better) Translates to: SPHQLGPLTRLP*PSRDHNPDLWP Trigger: GGGCCATAGATCTGGGTTATGATCTCTTGATGGCCATGGTAGGCGCGTCAGGGGGCCCAGCTGGTGCGGTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CAA 90 bp | AAGCCAGGCAGGGACTTGGGGAGCAGCATCTGGCAGGACAAGGGCTaGTCTGAGGTCTGCATCTGGTATCCCAACTTCGAGGGAGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: KPGRDLGSSIWQDKG*SEVCIWYPNFEGGS Trigger: GCTCCCTCCCTCGAAGTTGGGATACCAGATGCAGACCTCAGACAAGCCCTTGTCCTGCCAGATGCTGCTCCCCAAGTCCCTGCCTGGCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 72 bp | ATACTGGATCAGCCGCTGAACCCCAGCCTTCATCGCTaGCTTAAGAGCAGCCGTGATCACCGCACCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: ILDQPLNPSLHR*LKSSRDHRTSW Trigger: CCAGCTGGTGCGGTGATCACGGCTGCTCTTAAGCCAGCGATGAAGGCTGGGGTTCAGCGGCTGATCCAGTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS TCA 72 bp | CTTGGGGAGCAGCATCTGGCAGGACAAGGGCTTGTCTaGGGTCTGCATCTGGTATCCCAACTTCGAGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LGEQHLAGQGLV*GLHLVSQLRGR Trigger: CCTCCCTCGAAGTTGGGATACCAGATGCAGACCTCAGACAAGCCCTTGTCCTGCCAGATGCTGCTCCCCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS GCA 72 bp | AGCAGCATCTGGCAGGACAAGGGCTTGTCTGAGGTCTaGATCTGGTATCCCAACTTCGAGGGAGGGAGCACC | + |
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Preference number: 6 (lower is better) Translates to: SSIWQDKGLSEV*IWYPNFEGGST Trigger: GGTGCTCCCTCCCTCGAAGTTGGGATACCAGATGCAGACCTCAGACAAGCCCTTGTCCTGCCAGATGCTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 72 bp | AACACCGATATCTGTGGTGGCATCCTTTCCGGTCTCTaGCTGATGGGTGGTCACCTCTGGCTGAGGGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: NTDICGGILSGL*LMGGHLWLRGG Trigger: ACCACCCCTCAGCCAGAGGTGACCACCCATCAGCCAGAGACCGGAAAGGATGCCACCACAGATATCGGTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS GCA 72 bp | AGCAGCTGGATTGACATCAGGATGAGTCGGAGGCTATaGATGTCAGGAGCTGAGCACCCATACAGTCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: SSWIDIRMSRRL*MSGAEHPYSPA Trigger: GGCCGGACTGTATGGGTGCTCAGCTCCTGACATGCATAGCCTCCGACTCATCCTGATGTCAATCCAGCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238970.2 |
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| CDS CCA 72 bp | ATCTGGCAGGACAAGGGCTTGTCTGAGGTCTGCATCTaGTATCCCAACTTCGAGGGAGGGAGCACCGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: IWQDKGLSEVCI*YPNFEGGSTVE Trigger: CTCTACGGTGCTCCCTCCCTCGAAGTTGGGATACCAGATGCAGACCTCAGACAAGCCCTTGTCCTGCCAGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CAA 72 bp | AGGGACTTGGGGAGCAGCATCTGGCAGGACAAGGGCTaGTCTGAGGTCTGCATCTGGTATCCCAACTTCGAG | + |
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Preference number: 6 (lower is better) Translates to: RDLGSSIWQDKG*SEVCIWYPNFE Trigger: CTCGAAGTTGGGATACCAGATGCAGACCTCAGACAAGCCCTTGTCCTGCCAGATGCTGCTCCCCAAGTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CAA 72 bp | CGCAGTCTGTGTTGGAAATCGAACGTTTGGCCCTCTTaGGACCTGGCTGCTCCCAGGCTAAGAGCTGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: RSLCWKSNVWPS*DLAAPRLRAAE Trigger: CTCTGCAGCTCTTAGCCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGTTCGATTTCCAACACAGACTGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CAA 90 bp | GATCATTGTCGCAGTCTGTGTTGGAAATCGAACGTTTGGCCCTCTTaGGACCTGGCTGCTCCCAGGCTAAGAGCTGCAGAGCAGAGGACA | + |
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Preference number: 6 (lower is better) Translates to: DHCRSLCWKSNVWPS*DLAAPRLRAAEQRT Trigger: TGTCCTCTGCTCTGCAGCTCTTAGCCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGTTCGATTTCCAACACAGACTGCGACAATGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS TCA 72 bp | GCAGGAGATAGCAAAGCAGCTGGATTGACATCAGGATaGGTCGGAGGCTATGCATGTCAGGAGCTGAGCACC | + |
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Preference number: 6 (lower is better) Translates to: AGDSKAAGLTSG*VGGYACQELST Trigger: GGTGCTCAGCTCCTGACATGCATAGCCTCCGACTCATCCTGATGTCAATCCAGCTGCTTTGCTATCTCCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238970.2 |
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| CDS CCA 72 bp | GATCATTGTCGCAGTCTGTGTTGGAAATCGAACGTTTaGCCCTCTTTGGACCTGGCTGCTCCCAGGCTAAGA | + |
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Preference number: 6 (lower is better) Translates to: DHCRSLCWKSNV*PSLDLAAPRLR Trigger: TCTTAGCCTGGGAGCAGCCAGGTCCAAAGAGGGCCAAACGTTCGATTTCCAACACAGACTGCGACAATGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 72 bp | CTACCATGGCCATCAAGAGATCATAACCCAGATCTATaGCCCCATCTCGACCTCGTTCCTTGGCCTTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: LPWPSRDHNPDL*PHLDLVPWPCQ Trigger: CTGACAAGGCCAAGGAACGAGGTCGAGATGGGGCCATAGATCTGGGTTATGATCTCTTGATGGCCATGGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 72 bp | ATCCTTTCCGGTCTCTGGCTGATGGGTGGTCACCTCTaGCTGAGGGGTGGTCACCTCTTTCTCATCATAATA | + |
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Preference number: 6 (lower is better) Translates to: ILSGLWLMGGHL*LRGGHLFLIII Trigger: TATTATGATGAGAAAGAGGTGACCACCCCTCAGCCAGAGGTGACCACCCATCAGCCAGAGACCGGAAAGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 72 bp | GGACACTCTGTTCCTGATCATTGTCGCAGTCTGTGTTaGAAATCGAACGTTTGGCCCTCTTTGGACCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: GHSVPDHCRSLC*KSNVWPSLDLA Trigger: AGCCAGGTCCAAAGAGGGCCAAACGTTCGATTTCCAACACAGACTGCGACAATGATCAGGAACAGAGTGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS CCA 72 bp | TCTCTGGCTGATGGGTGGTCACCTCTGGCTGAGGGGTaGTCACCTCTTTCTCATCATAATAATACTGGATCA | + |
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Preference number: 6 (lower is better) Translates to: SLADGWSPLAEG*SPLSHHNNTGS Trigger: TGATCCAGTATTATTATGATGAGAAAGAGGTGACCACCCCTCAGCCAGAGGTGACCACCCATCAGCCAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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| CDS TCA 72 bp | AGGCCACTCCCAGTTAGAAGTTGTACTTTCAACTTCTaGCACAAAATTAGACATGGCTATTTCTTCCACAAC | + |
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Preference number: 6 (lower is better) Translates to: RPLPVRSCTFNF*HKIRHGYFFHN Trigger: GTTGTGGAAGAAATAGCCATGTCTAATTTTGTGTCAGAAGTTGAAAGTACAACTTCTAACTGGGAGTGGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050901.5 ENSMUST00000238970.2 |
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