Pregenerated sensors for APOD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022548Ensembl transcript IDs: ENSMUST00000115230.2, ENSMUST00000130560.8
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGACGGGTTTCTaGGTTCGAGGCCAGCATGGTCTACAAAGTGAGTCCCCTGACAGC | + |
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Preference number: 1 (lower is better) Translates to: TPLIPALGRQRQTGF*VRGQHGLQSESPDS Trigger: GCTGTCAGGGGACTCACTTTGTAGACCATGCTGGCCTCGAACTCAGAAACCCGTCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR CCA 90 bp | GCTACTGGAGCAGAGGCATGGGAGTGCCAAGGCTTGAAGACAGACTaGATACTGGATAACTTGAGCCTGTGTCTTGAAGAGGGTGGGATG | + |
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Preference number: 1 (lower is better) Translates to: ATGAEAWECQGLKTD*ILDNLSLCLEEGGM Trigger: CATCCCACCCTCTTCAAGACACAGGCTCAAGTTATCCAGTATCCAGTCTGTCTTCAAGCCTTGGCACTCCCATGCCTCTGCTCCAGTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR CCA 90 bp | ATTTCCCGTGATGCCCTCTATGTTGCTCTGTCTTATTTCTATCACTaGACTGAGTTGACGCTTGGGGGCAAGGAGAGCGGTGGTCAGGGA | + |
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Preference number: 1 (lower is better) Translates to: ISRDALYVALSYFYH*TELTLGGKESGGQG Trigger: TCCCTGACCACCGCTCTCCTTGCCCCCAAGCGTCAACTCAGTCCAGTGATAGAAATAAGACAGAGCAACATAGAGGGCATCACGGGAAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR CCA 90 bp | GCTGATCAGCAAAATGTTTATTATTGGGCTAGCAAGGTGACAGTGTaGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCC | + |
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Preference number: 1 (lower is better) Translates to: ADQQNVYYWASKVTV*GQVGFGPTFHESPP Trigger: GGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTGTCACCTTGCTAGCCCAATAATAAACATTTTGCTGATCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR CCA 90 bp | ACAAGATCAGAAAAGAACAACACCAGGTGGTTTCTGGCTTGCTACTaGAGCAGAGGCATGGGAGTGCCAAGGCTTGAAGACAGACTGGAT | + |
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Preference number: 1 (lower is better) Translates to: TRSEKNNTRWFLACY*SRGMGVPRLEDRLD Trigger: ATCCAGTCTGTCTTCAAGCCTTGGCACTCCCATGCCTCTGCTCCAGTAGCAAGCCAGAAACCACCTGGTGTTGTTCTTTTCTGATCTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR GCA 90 bp | AAAGTCACAAGATCAGAAAAGAACAACACCAGGTGGTTTCTGGCTTaGTACTGGAGCAGAGGCATGGGAGTGCCAAGGCTTGAAGACAGA | + |
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Preference number: 1 (lower is better) Translates to: KVTRSEKNNTRWFLA*YWSRGMGVPRLEDR Trigger: TCTGTCTTCAAGCCTTGGCACTCCCATGCCTCTGCTCCAGTAGCAAGCCAGAAACCACCTGGTGTTGTTCTTTTCTGATCTTGTGACTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR TCA 90 bp | ATGCCCTCTATGTTGCTCTGTCTTATTTCTATCACTGGACTGAGTTaGCGCTTGGGGGCAAGGAGAGCGGTGGTCAGGGATTCTAAATTT | + |
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Preference number: 1 (lower is better) Translates to: MPSMLLCLISITGLS*RLGARRAVVRDSKF Trigger: AAATTTAGAATCCCTGACCACCGCTCTCCTTGCCCCCAAGCGTCAACTCAGTCCAGTGATAGAAATAAGACAGAGCAACATAGAGGGCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR-3UTR CCA 90 bp | GGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCCTTACTCTCCCCTGCCATGGTTGCTTaGTACTTAAGAGGCGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: GQLSMSPLPPLASIALLSPAMVA*YLRGVG Trigger: CCCCACGCCTCTTAAGTACCAAGCAACCATGGCAGG...GGAGAGTAAGGCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| 3UTR-3UTR CCA 90 bp | AGAGGCAGACGGGTTTCTGAGTTCGAGGCCAGCATGGTCTACAAAGTGAGTCCCCACCAGGATCTAACTTaGCCATCAGCTTTCTCTACC | + |
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Preference number: 2 (lower is better) Translates to: RGRRVSEFEASMVYKVSPHQDLT*PSAFST Trigger: GGTAGAGAAAGCTGATGGCCAAGTTAGATCCTGGTG...GGGACTCACTTTGTAGACCATGCTGGCCTCGAACTCAGAAACCCGTCTGCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR CAA 90 bp | GGTTTCTGGCTTGCTACTGGAGCAGAGGCATGGGAGTGCCAAGGCTaGAAGACAGACTGGATACTGGATAACTTGAGCCTGTGTCTTGAA | + |
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Preference number: 2 (lower is better) Translates to: GFWLATGAEAWECQG*KTDWILDNLSLCLE Trigger: TTCAAGACACAGGCTCAAGTTATCCAGTATCCAGTCTGTCTTCAAGCCTTGGCACTCCCATGCCTCTGCTCCAGTAGCAAGCCAGAAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR-3UTR TCA 90 bp | AGTCACCAGGATCTAACTTGGCCATCAGCTTTCTCTACCTTTAAACTACAGCCATGGGCCAACTTTCCATaGGTCCCCTCCCTCCATTGG | + |
|
Preference number: 2 (lower is better) Translates to: SHQDLTWPSAFSTFKLQPWANFP*VPSLHW Trigger: CCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCCA...TGGCTGTAGTTTAAAGGTAGAGAAAGCTGATGGCCAAGTTAGATCCTGGTGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR-3UTR CCA 90 bp | AAAAGTCACAAGATCAGAAAAGAACAACACCAGGTGGTTTCTGGCTTGCTACTGAGTGTGGGGTCAGGTTaGGTTTGGGCCAACTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: KSHKIRKEQHQVVSGLLLSVGSG*VWANFP Trigger: TGGAAAGTTGGCCCAAACCCAACCTGACCCCACACT...CAGTAGCAAGCCAGAAACCACCTGGTGTTGTTCTTTTCTGATCTTGTGACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTCTGATTTCCCGTGATGCCCTCTATGTTGCTCTGTCTTATTTCTATCACGACCTCAGTAAATTCTaGGTGAAAGAGAAAATTTGC | + |
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Preference number: 2 (lower is better) Translates to: CSLISRDALYVALSYFYHDLSKF*VKEKIC Trigger: GCAAATTTTCTCTTTCACTCAGAATTTACTGAGGTC...GTGATAGAAATAAGACAGAGCAACATAGAGGGCATCACGGGAAATCAGAGAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR TCA 72 bp | ATCCCAGCACTCGGGAGGCAGAGGCAGACGGGTTTCTaGGTTCGAGGCCAGCATGGTCTACAAAGTGAGTCC | + |
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Preference number: 3 (lower is better) Translates to: IPALGRQRQTGF*VRGQHGLQSES Trigger: GGACTCACTTTGTAGACCATGCTGGCCTCGAACTCAGAAACCCGTCTGCCTCTGCCTCCCGAGTGCTGGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR CCA 72 bp | GAAAAGAACAACACCAGGTGGTTTCTGGCTTGCTACTaGAGCAGAGGCATGGGAGTGCCAAGGCTTGAAGAC | + |
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Preference number: 3 (lower is better) Translates to: EKNNTRWFLACY*SRGMGVPRLED Trigger: GTCTTCAAGCCTTGGCACTCCCATGCCTCTGCTCCAGTAGCAAGCCAGAAACCACCTGGTGTTGTTCTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR TCA 72 bp | TGCTCATGCTTCGGCCCTGTTCCGAAGACTTCCCGATaGGAAAGTAAAAGCTTCAAGGAAGCCTCCAGACAG | + |
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Preference number: 3 (lower is better) Translates to: CSCFGPVPKTSR*ESKSFKEASRQ Trigger: CTGTCTGGAGGCTTCCTTGAAGCTTTTACTTTCTCATCGGGAAGTCTTCGGAACAGGGCCGAAGCATGAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR TCA 72 bp | CCTCTATGTTGCTCTGTCTTATTTCTATCACTGGACTaGGTTGACGCTTGGGGGCAAGGAGAGCGGTGGTCA | + |
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Preference number: 3 (lower is better) Translates to: PLCCSVLFLSLD*VDAWGQGERWS Trigger: TGACCACCGCTCTCCTTGCCCCCAAGCGTCAACTCAGTCCAGTGATAGAAATAAGACAGAGCAACATAGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR GCA 72 bp | TCACAGGCTGTCTGCTTTTCCCAGATATTTTCAGGATaGTCATGCTTCGGCCCTGTTCCGAAGACTTCCCGA | + |
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Preference number: 3 (lower is better) Translates to: SQAVCFSQIFSG*SCFGPVPKTSR Trigger: TCGGGAAGTCTTCGGAACAGGGCCGAAGCATGAGCATCCTGAAAATATCTGGGAAAAGCAGACAGCCTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR GCA 72 bp | AGATCAGAAAAGAACAACACCAGGTGGTTTCTGGCTTaGTACTGGAGCAGAGGCATGGGAGTGCCAAGGCTT | + |
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Preference number: 3 (lower is better) Translates to: RSEKNNTRWFLA*YWSRGMGVPRL Trigger: AAGCCTTGGCACTCCCATGCCTCTGCTCCAGTAGCAAGCCAGAAACCACCTGGTGTTGTTCTTTTCTGATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR CCA 72 bp | GATGCCCTCTATGTTGCTCTGTCTTATTTCTATCACTaGACTGAGTTGACGCTTGGGGGCAAGGAGAGCGGT | + |
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Preference number: 3 (lower is better) Translates to: DALYVALSYFYH*TELTLGGKESG Trigger: ACCGCTCTCCTTGCCCCCAAGCGTCAACTCAGTCCAGTGATAGAAATAAGACAGAGCAACATAGAGGGCATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR CCA 72 bp | AGAGGGACCCTGGATCCGAGTCACCAGGATCTAACTTaGCCATCAGCTTTCTCTACCTTTAAACTACAGCCA | + |
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Preference number: 3 (lower is better) Translates to: RGTLDPSHQDLT*PSAFSTFKLQP Trigger: TGGCTGTAGTTTAAAGGTAGAGAAAGCTGATGGCCAAGTTAGATCCTGGTGACTCGGATCCAGGGTCCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR CCA 72 bp | TCACAAGATCAGAAAAGAACAACACCAGGTGGTTTCTaGCTTGCTACTGGAGCAGAGGCATGGGAGTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: SQDQKRTTPGGF*LATGAEAWECQ Trigger: TTGGCACTCCCATGCCTCTGCTCCAGTAGCAAGCCAGAAACCACCTGGTGTTGTTCTTTTCTGATCTTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR TCA 72 bp | ACTACAGCCAAAGGGTTTCCAACCATCTGCCGACCATaGCTCTTGCACTATAAACCTAGCTCAGAATCCACA | + |
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Preference number: 3 (lower is better) Translates to: TTAKGFPTICRP*LLHYKPSSEST Trigger: TGTGGATTCTGAGCTAGGTTTATAGTGCAAGAGTCATGGTCGGCAGATGGTTGGAAACCCTTTGGCTGTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR TCA 72 bp | GAAAGTAAAAGCTTCAAGGAAGCCTCCAGACAGAAGTaGAAAACGTCCCAGAATTCCCTCCAGAGCATCTGC | + |
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Preference number: 3 (lower is better) Translates to: ESKSFKEASRQK*KTSQNSLQSIC Trigger: GCAGATGCTCTGGAGGGAATTCTGGGACGTTTTTCACTTCTGTCTGGAGGCTTCCTTGAAGCTTTTACTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR GCA 72 bp | CCAAAGGGTTTCCAACCATCTGCCGACCATGACTCTTaGACTATAAACCTAGCTCAGAATCCACAGGAAACA | + |
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Preference number: 3 (lower is better) Translates to: PKGFQPSADHDS*TINLAQNPQET Trigger: TGTTTCCTGTGGATTCTGAGCTAGGTTTATAGTGCAAGAGTCATGGTCGGCAGATGGTTGGAAACCCTTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| 3UTR TCA 72 bp | TGTCTTGAAGAGGGTGGGATGTTCTCTGATTTCCCGTaGTGCCCTCTATGTTGCTCTGTCTTATTTCTATCA | + |
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Preference number: 3 (lower is better) Translates to: CLEEGGMFSDFP*CPLCCSVLFLS Trigger: TGATAGAAATAAGACAGAGCAACATAGAGGGCATCACGGGAAATCAGAGAACATCCCACCCTCTTCAAGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR GCA 90 bp | CAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCAACGTCAAAATTCTCTTaGACAGGAGGAGACGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: QCGVRLGLGQLSMSPLPPTSKFS*TGGDGH Trigger: ATGCCCGTCTCCTCCTGTGCAAGAGAATTTTGACGT...TGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR GCA 90 bp | GGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCCTTACTCTCCGCCAGAAGAAGGTGGTaGAGGAGTACACGAGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: GQLSMSPLPPLASIALLSARRRW*RSTRGH Trigger: ATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGC...GGAGAGTAAGGCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR GCA 90 bp | GGGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCCTTACTCTCGCCAGAAGAAGGTGGTaGAGGAGTACACGAGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: GPTFHESPPSIGFYSLTLARRRW*RSTRGH Trigger: ATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGC...GAGAGTAAGGCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | CAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCAAGTTTTCATAATCGGTaGCCAGGATCCAGTAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: QCGVRLGLGQLSMSPLPPSFHNR*PGSSRV Trigger: CACCCTACTGGATCCTGGCCACCGATTATGAAAACT...TGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | CAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCACCATCAGCGAGTAGTTaGCTTGAATGCAGTTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: QCGVRLGLGQLSMSPLPPPSASS*LECSFL Trigger: AAGGAAACTGCATTCAAGCCAACTACTCGCTGATGG...TGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | ACAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCCCTTTACTTGGTTCATaGTTCCATCAGGACTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: TVWGQVGFGPTFHESPPSPLLGS*FHQDSA Trigger: AGCTGAGTCCTGATGGAACCATGAACCAAGTAAAGG...GGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | ACAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCAGACGTTGCTCTGTTTaGCTTCACCCTTTACTTGGT | + |
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Preference number: 4 (lower is better) Translates to: TVWGQVGFGPTFHESPPSRRCSV*LHPLLG Trigger: ACCAAGTAAAGGGTGAAGCCAAACAGAGCAACGTCT...GGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | CAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCAAGACGTTGCTCTGTTTaGCTTCACCCTTTACTTGGT | + |
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Preference number: 4 (lower is better) Translates to: QCGVRLGLGQLSMSPLPPRRCSV*LHPLLG Trigger: ACCAAGTAAAGGGTGAAGCCAAACAGAGCAACGTCT...TGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | TATTGGGCTAGCAAGGTGACAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCATCAACGGGAAGAACTaGACTTCCAGCTTGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: YWASKVTVWGQVGFGPTFINGKN*TSSLAG Trigger: GCCAGCCAAGCTGGAAGTCCAGTTCTTCCCGTTGAT...GAAAGTTGGCCCAAACCCAACCTGACCCCACACTGTCACCTTGCTAGCCCAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| 3UTR CAA 72 bp | CTTGCTACTGGAGCAGAGGCATGGGAGTGCCAAGGCTaGAAGACAGACTGGATACTGGATAACTTGAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LATGAEAWECQG*KTDWILDNLSL Trigger: CAGGCTCAAGTTATCCAGTATCCAGTCTGTCTTCAAGCCTTGGCACTCCCATGCCTCTGCTCCAGTAGCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | TATTGGGCTAGCAAGGTGACAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCAGTTTTCATAATCGGTaGCCAGGATCCAGTAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: YWASKVTVWGQVGFGPTFSFHNR*PGSSRV Trigger: CACCCTACTGGATCCTGGCCACCGATTATGAAAACT...GAAAGTTGGCCCAAACCCAACCTGACCCCACACTGTCACCTTGCTAGCCCAATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| 3UTR CAA 72 bp | AAGATCAGAAAAGAACAACACCAGGTGGTTTCTGGCTaGCTACTGGAGCAGAGGCATGGGAGTGCCAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: KIRKEQHQVVSG*LLEQRHGSAKA Trigger: AGCCTTGGCACTCCCATGCCTCTGCTCCAGTAGCAAGCCAGAAACCACCTGGTGTTGTTCTTTTCTGATCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR GCA 90 bp | CTCACAGGCTGTCTGCTTTTCCCAGATATTTTCAGGATGCTCATGCTTCGGCCCACGTCAAAATTCTCTTaGACAGGAGGAGACGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: LTGCLLFPDIFRMLMLRPTSKFS*TGGDGH Trigger: ATGCCCGTCTCCTCCTGTGCAAGAGAATTTTGACGT...GGGCCGAAGCATGAGCATCCTGAAAATATCTGGGAAAAGCAGACAGCCTGTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | GTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTGGGCATTTCCCAAGATaGAAATTTTGTCCTTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: VRLGLGQLSMSPLPPLASGHFPR*KFCPLA Trigger: AGCCAAAGGACAAAATTTCCATCTTGGGAAATGCCC...AGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | GTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTTTTCTCAAAGCTCGCTaGGATCTTCTCAATTTCGTA | + |
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Preference number: 4 (lower is better) Translates to: VRLGLGQLSMSPLPPLASFLKAR*DLLNFV Trigger: TACGAAATTGAGAAGATCCCAGCGAGCTTTGAGAAA...AGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| 3UTR CAA 72 bp | TGCCAAGGCTTGAAGACAGACTGGATACTGGATAACTaGAGCCTGTGTCTTGAAGAGGGTGGGATGTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: CQGLKTDWILDN*SLCLEEGGMFS Trigger: AGAGAACATCCCACCCTCTTCAAGACACAGGCTCAAGTTATCCAGTATCCAGTCTGTCTTCAAGCCTTGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | AGAGGCAGACGGGTTTCTGAGTTCGAGGCCAGCATGGTCTACAAAGTGAGTCCCGTAGGTTATTGTTTCTaGAGGGAGATAAGGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: RGRRVSEFEASMVYKVSPVGYCF*REIRIS Trigger: AGAAATCCTTATCTCCCTCCAGAAACAATAACCTAC...GGGACTCACTTTGTAGACCATGCTGGCCTCGAACTCAGAAACCCGTCTGCCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | TTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCCTTACTCAAACAAAATCCACATaGAAGAGCCAGAAGAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: FGPTFHESPPSIGFYSLTQTKST*KSQKKV Trigger: CACCTTCTTCTGGCTCTTCCATGTGGATTTTGTTTG...AGTAAGGCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | GGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCCTTACTCTCCGTAGGTTATTGTTTCTaGAGGGAGATAAGGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: GQLSMSPLPPLASIALLSVGYCF*REIRIS Trigger: AGAAATCCTTATCTCCCTCCAGAAACAATAACCTAC...GGAGAGTAAGGCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | TTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCCTTACTTTTCTCAAAGCTCGCTaGGATCTTCTCAATTTCGTA | + |
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Preference number: 4 (lower is better) Translates to: FGPTFHESPPSIGFYSLTFLKAR*DLLNFV Trigger: TACGAAATTGAGAAGATCCCAGCGAGCTTTGAGAAA...AGTAAGGCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | AAACCTAGCTCAGAATCCACAGGAAACACAGCTGATCAGCAAAATGTTTATTATATCAACGGGAAGAACTaGACTTCCAGCTTGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: KPSSESTGNTADQQNVYYINGKN*TSSLAG Trigger: GCCAGCCAAGCTGGAAGTCCAGTTCTTCCCGTTGAT...ATAATAAACATTTTGCTGATCAGCTGTGTTTCCTGTGGATTCTGAGCTAGGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | AAACCTAGCTCAGAATCCACAGGAAACACAGCTGATCAGCAAAATGTTTATTATCCTTTACTTGGTTCATaGTTCCATCAGGACTCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: KPSSESTGNTADQQNVYYPLLGS*FHQDSA Trigger: AGCTGAGTCCTGATGGAACCATGAACCAAGTAAAGG...ATAATAAACATTTTGCTGATCAGCTGTGTTTCCTGTGGATTCTGAGCTAGGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR CCA 90 bp | AAACCTAGCTCAGAATCCACAGGAAACACAGCTGATCAGCAAAATGTTTATTATGGGCATTTCCCAAGATaGAAATTTTGTCCTTTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: KPSSESTGNTADQQNVYYGHFPR*KFCPLA Trigger: AGCCAAAGGACAAAATTTCCATCTTGGGAAATGCCC...ATAATAAACATTTTGCTGATCAGCTGTGTTTCCTGTGGATTCTGAGCTAGGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS GCA 90 bp | CACGAGGGCATAGTTTTCATAATCGGTGGCCAGGATCCAGTAGGGTaGCGGTGGCATCAACGGGAAGAACTGGACTTCCAGCTTGGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: HEGIVFIIGGQDPVG*RWHQREELDFQLGW Trigger: CCAGCCAAGCTGGAAGTCCAGTTCTTCCCGTTGATGCCACCGGCACCCTACTGGATCCTGGCCACCGATTATGAAAACTATGCCCTCGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | ACAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCCACGTCAAAATTCTCTaGCACAGGAGGAGACGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: TVWGQVGFGPTFHESPPSHVKIL*HRRRRA Trigger: TGCCCGTCTCCTCCTGTGCAAGAGAATTTTGACGTG...GGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | ACAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCGGCTTCACCCTTTACTaGGTTCATGGTTCCATCAGG | + |
|
Preference number: 5 (lower is better) Translates to: TVWGQVGFGPTFHESPPSGFTLY*VHGSIR Trigger: CCTGATGGAACCATGAACCAAGTAAAGGGTGAAGCC...GGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | ACAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCGAGACGTTGCTCTGTTaGGCTTCACCCTTTACTTGG | + |
|
Preference number: 5 (lower is better) Translates to: TVWGQVGFGPTFHESPPSETLLC*ASPFTW Trigger: CCAAGTAAAGGGTGAAGCCAAACAGAGCAACGTCTC...GGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGACCCCACACTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | GTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCGCTGGCTCTGAGACGTaGCTCTGTTTGGCTTCACCC | + |
|
Preference number: 5 (lower is better) Translates to: VGFGPTFHESPPSIGFYSAGSET*LCLASP Trigger: GGGTGAAGCCAAACAGAGCAACGTCTCAGAGCCAGC...GCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS TCA 90 bp | GAGACGGGCATTTCCCAAGATGGAAATTTTGTCCTTTGGCTGTGGTaGAGAGACCCGCCAGCGTGGCCAGGAACATCAGCATGGTCACCA | + |
|
Preference number: 5 (lower is better) Translates to: ETGISQDGNFVLWLW*RDPPAWPGTSAWSP Trigger: TGGTGACCATGCTGATGTTCCTGGCCACGCTGGCGGGTCTCTTCACCACAGCCAAAGGACAAAATTTCCATCTTGGGAAATGCCCGTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS CCA 90 bp | AGTAGGGTGCCGGTGGCATCAACGGGAAGAACTGGACTTCCAGCTTaGCTGGCTCTGAGACGTTGCTCTGTTTGGCTTCACCCTTTACTT | + |
|
Preference number: 5 (lower is better) Translates to: SRVPVASTGRTGLPA*LALRRCSVWLHPLL Trigger: AAGTAAAGGGTGAAGCCAAACAGAGCAACGTCTCAGAGCCAGCCAAGCTGGAAGTCCAGTTCTTCCCGTTGATGCCACCGGCACCCTACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS CCA 90 bp | AGAAGGTGGTGCAGGAGTACACGAGGGCATAGTTTTCATAATCGGTaGCCAGGATCCAGTAGGGTGCCGGTGGCATCAACGGGAAGAACT | + |
|
Preference number: 5 (lower is better) Translates to: RRWCRSTRGHSFHNR*PGSSRVPVASTGRT Trigger: AGTTCTTCCCGTTGATGCCACCGGCACCCTACTGGATCCTGGCCACCGATTATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | GGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCCTTACTCTCCAACTGGACTTCCAGCTaGGCTGGCTCTGAGACGTTG | + |
|
Preference number: 5 (lower is better) Translates to: GQLSMSPLPPLASIALLSNWTSS*AGSETL Trigger: CAACGTCTCAGAGCCAGCCAAGCTGGAAGTCCAGTT...GGAGAGTAAGGCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | TATTGGGCTAGCAAGGTGACAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCCACGTCAAAATTCTCTaGCACAGGAGGAGACGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: YWASKVTVWGQVGFGPTFHVKIL*HRRRRA Trigger: TGCCCGTCTCCTCCTGTGCAAGAGAATTTTGACGTG...GAAAGTTGGCCCAAACCCAACCTGACCCCACACTGTCACCTTGCTAGCCCAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS-3UTR CAA 90 bp | GTCAGGTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTTGGAAATTTTGTCCTTaGGCTGTGGTGAAGAGACCC | + |
|
Preference number: 5 (lower is better) Translates to: VRLGLGQLSMSPLPPLASWKFCP*AVVKRP Trigger: GGGTCTCTTCACCACAGCCAAAGGACAAAATTTCCA...AGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAACCTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS-3UTR CAA 90 bp | TATTGGGCTAGCAAGGTGACAGTGTGGGGTCAGGTTGGGTTTGGGCCAACTTTCGAGACGTTGCTCTGTTaGGCTTCACCCTTTACTTGG | + |
|
Preference number: 5 (lower is better) Translates to: YWASKVTVWGQVGFGPTFETLLC*ASPFTW Trigger: CCAAGTAAAGGGTGAAGCCAAACAGAGCAACGTCTC...GAAAGTTGGCCCAAACCCAACCTGACCCCACACTGTCACCTTGCTAGCCCAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS GCA 90 bp | TCAACGGGAAGAACTGGACTTCCAGCTTGGCTGGCTCTGAGACGTTaGTCTGTTTGGCTTCACCCTTTACTTGGTTCATGGTTCCATCAG | + |
|
Preference number: 5 (lower is better) Translates to: STGRTGLPAWLALRR*SVWLHPLLGSWFHQ Trigger: CTGATGGAACCATGAACCAAGTAAAGGGTGAAGCCAAACAGAGCAACGTCTCAGAGCCAGCCAAGCTGGAAGTCCAGTTCTTCCCGTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS CCA 90 bp | ACGTCAAAATTCTCTTGCACAGGAGGAGACGGGCATTTCCCAAGATaGAAATTTTGTCCTTTGGCTGTGGTGAAGAGACCCGCCAGCGTG | + |
|
Preference number: 5 (lower is better) Translates to: TSKFSCTGGDGHFPR*KFCPLAVVKRPASV Trigger: CACGCTGGCGGGTCTCTTCACCACAGCCAAAGGACAAAATTTCCATCTTGGGAAATGCCCGTCTCCTCCTGTGCAAGAGAATTTTGACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | GGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCCTTACTCTCCCAGCGAGTAGTTGGCTaGAATGCAGTTTCCTTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: GQLSMSPLPPLASIALLSQRVVG*NAVSFL Trigger: GAGAAAGGAAACTGCATTCAAGCCAACTACTCGCTG...GGAGAGTAAGGCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS CCA 90 bp | TTGGCTGGCTCTGAGACGTTGCTCTGTTTGGCTTCACCCTTTACTTaGTTCATGGTTCCATCAGGACTCAGCTCCTTGTTTAGCACTTCG | + |
|
Preference number: 5 (lower is better) Translates to: LAGSETLLCLASPFT*FMVPSGLSSLFSTS Trigger: CGAAGTGCTAAACAAGGAGCTGAGTCCTGATGGAACCATGAACCAAGTAAAGGGTGAAGCCAAACAGAGCAACGTCTCAGAGCCAGCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | GTTGGGTTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCTCAGGACTCAGCTCCTaGTTTAGCACTTCGATGTTT | + |
|
Preference number: 5 (lower is better) Translates to: VGFGPTFHESPPSIGFYSSGLSS*FSTSMF Trigger: AAACATCGAAGTGCTAAACAAGGAGCTGAGTCCTGA...GCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAACCCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | TTTGGGCCAACTTTCCATGAGTCCCCTCCCTCCATTGGCTTCTATAGCCTTACTGGCTTCACCCTTTACTaGGTTCATGGTTCCATCAGG | + |
|
Preference number: 5 (lower is better) Translates to: FGPTFHESPPSIGFYSLTGFTLY*VHGSIR Trigger: CCTGATGGAACCATGAACCAAGTAAAGGGTGAAGCC...AGTAAGGCTATAGAAGCCAATGGAGGGAGGGGACTCATGGAAAGTTGGCCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | TGTTCTCTGATTTCCCGTGATGCCCTCTATGTTGCTCTGTCTTATTTCTATCACGCTGGCTCTGAGACGTaGCTCTGTTTGGCTTCACCC | + |
|
Preference number: 5 (lower is better) Translates to: CSLISRDALYVALSYFYHAGSET*LCLASP Trigger: GGGTGAAGCCAAACAGAGCAACGTCTCAGAGCCAGC...GTGATAGAAATAAGACAGAGCAACATAGAGGGCATCACGGGAAATCAGAGAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | AGTCACCAGGATCTAACTTGGCCATCAGCTTTCTCTACCTTTAAACTACAGCCAAACTGGACTTCCAGCTaGGCTGGCTCTGAGACGTTG | + |
|
Preference number: 5 (lower is better) Translates to: SHQDLTWPSAFSTFKLQPNWTSS*AGSETL Trigger: CAACGTCTCAGAGCCAGCCAAGCTGGAAGTCCAGTT...TGGCTGTAGTTTAAAGGTAGAGAAAGCTGATGGCCAAGTTAGATCCTGGTGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS CCA 90 bp | GCTCTGAGACGTTGCTCTGTTTGGCTTCACCCTTTACTTGGTTCATaGTTCCATCAGGACTCAGCTCCTTGTTTAGCACTTCGATGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: ALRRCSVWLHPLLGS*FHQDSAPCLALRCF Trigger: GAAACATCGAAGTGCTAAACAAGGAGCTGAGTCCTGATGGAACCATGAACCAAGTAAAGGGTGAAGCCAAACAGAGCAACGTCTCAGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS GCA 90 bp | GCACTTCGATGTTTCCGTTCTCCATCAGCGAGTAGTTGGCTTGAATaGAGTTTCCTTTCTCAAAGCTCGCTGGGATCTTCTCAATTTCGT | + |
|
Preference number: 5 (lower is better) Translates to: ALRCFRSPSASSWLE*SFLSQSSLGSSQFR Trigger: ACGAAATTGAGAAGATCCCAGCGAGCTTTGAGAAAGGAAACTGCATTCAAGCCAACTACTCGCTGATGGAGAACGGAAACATCGAAGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS CCA 90 bp | CCTTGTTTAGCACTTCGATGTTTCCGTTCTCCATCAGCGAGTAGTTaGCTTGAATGCAGTTTCCTTTCTCAAAGCTCGCTGGGATCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: PCLALRCFRSPSASS*LECSFLSQSSLGSS Trigger: AGAAGATCCCAGCGAGCTTTGAGAAAGGAAACTGCATTCAAGCCAACTACTCGCTGATGGAGAACGGAAACATCGAAGTGCTAAACAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS CCA 90 bp | TTCCAAGAATCCAAACAAAATCCACATGGAAGAGCCAGAAGAAGGTaGTGCAGGAGTACACGAGGGCATAGTTTTCATAATCGGTGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: FQESKQNPHGRARRR*CRSTRGHSFHNRWP Trigger: TGGCCACCGATTATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTCCATGTGGATTTTGTTTGGATTCTTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | TCTGCTTTTCCCAGATATTTTCAGGATGCTCATGCTTCGGCCCTGTTCCGAAGATCAGGACTCAGCTCCTaGTTTAGCACTTCGATGTTT | + |
|
Preference number: 5 (lower is better) Translates to: SAFPRYFQDAHASALFRRSGLSS*FSTSMF Trigger: AAACATCGAAGTGCTAAACAAGGAGCTGAGTCCTGA...TCTTCGGAACAGGGCCGAAGCATGAGCATCCTGAAAATATCTGGGAAAAGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
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| CDS-3UTR CAA 90 bp | AGTCACCAGGATCTAACTTGGCCATCAGCTTTCTCTACCTTTAAACTACAGCCATGGAAATTTTGTCCTTaGGCTGTGGTGAAGAGACCC | + |
|
Preference number: 5 (lower is better) Translates to: SHQDLTWPSAFSTFKLQPWKFCP*AVVKRP Trigger: GGGTCTCTTCACCACAGCCAAAGGACAAAATTTCCA...TGGCTGTAGTTTAAAGGTAGAGAAAGCTGATGGCCAAGTTAGATCCTGGTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130560.8 |
||
| CDS CCA 72 bp | CCGGTGGCATCAACGGGAAGAACTGGACTTCCAGCTTaGCTGGCTCTGAGACGTTGCTCTGTTTGGCTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: PVASTGRTGLPA*LALRRCSVWLH Trigger: GTGAAGCCAAACAGAGCAACGTCTCAGAGCCAGCCAAGCTGGAAGTCCAGTTCTTCCCGTTGATGCCACCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS CCA 72 bp | TTCATAATCGGTGGCCAGGATCCAGTAGGGTGCCGGTaGCATCAACGGGAAGAACTGGACTTCCAGCTTGGC | + |
|
Preference number: 6 (lower is better) Translates to: FIIGGQDPVGCR*HQREELDFQLG Trigger: GCCAAGCTGGAAGTCCAGTTCTTCCCGTTGATGCCACCGGCACCCTACTGGATCCTGGCCACCGATTATGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS CCA 72 bp | TGCAGGAGTACACGAGGGCATAGTTTTCATAATCGGTaGCCAGGATCCAGTAGGGTGCCGGTGGCATCAACG | + |
|
Preference number: 6 (lower is better) Translates to: CRSTRGHSFHNR*PGSSRVPVAST Trigger: CGTTGATGCCACCGGCACCCTACTGGATCCTGGCCACCGATTATGAAAACTATGCCCTCGTGTACTCCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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| CDS CAA 90 bp | ATTCTCTTGCACAGGAGGAGACGGGCATTTCCCAAGATGGAAATTTaGTCCTTTGGCTGTGGTGAAGAGACCCGCCAGCGTGGCCAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: ILLHRRRRAFPKMEI*SFGCGEETRQRGQE Trigger: TTCCTGGCCACGCTGGCGGGTCTCTTCACCACAGCCAAAGGACAAAATTTCCATCTTGGGAAATGCCCGTCTCCTCCTGTGCAAGAGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS GCA 72 bp | ATAGTTTTCATAATCGGTGGCCAGGATCCAGTAGGGTaGCGGTGGCATCAACGGGAAGAACTGGACTTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: IVFIIGGQDPVG*RWHQREELDFQ Trigger: CTGGAAGTCCAGTTCTTCCCGTTGATGCCACCGGCACCCTACTGGATCCTGGCCACCGATTATGAAAACTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS TCA 72 bp | ATTTCCCAAGATGGAAATTTTGTCCTTTGGCTGTGGTaGAGAGACCCGCCAGCGTGGCCAGGAACATCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: ISQDGNFVLWLW*RDPPAWPGTSA Trigger: TGCTGATGTTCCTGGCCACGCTGGCGGGTCTCTTCACCACAGCCAAAGGACAAAATTTCCATCTTGGGAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS CCA 72 bp | TTCTCTTGCACAGGAGGAGACGGGCATTTCCCAAGATaGAAATTTTGTCCTTTGGCTGTGGTGAAGAGACCC | + |
|
Preference number: 6 (lower is better) Translates to: FSCTGGDGHFPR*KFCPLAVVKRP Trigger: GGGTCTCTTCACCACAGCCAAAGGACAAAATTTCCATCTTGGGAAATGCCCGTCTCCTCCTGTGCAAGAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS CCA 72 bp | GCACTTCGATGTTTCCGTTCTCCATCAGCGAGTAGTTaGCTTGAATGCAGTTTCCTTTCTCAAAGCTCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: ALRCFRSPSASS*LECSFLSQSSL Trigger: CAGCGAGCTTTGAGAAAGGAAACTGCATTCAAGCCAACTACTCGCTGATGGAGAACGGAAACATCGAAGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS GCA 72 bp | TGTTTCCGTTCTCCATCAGCGAGTAGTTGGCTTGAATaGAGTTTCCTTTCTCAAAGCTCGCTGGGATCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: CFRSPSASSWLE*SFLSQSSLGSS Trigger: AGAAGATCCCAGCGAGCTTTGAGAAAGGAAACTGCATTCAAGCCAACTACTCGCTGATGGAGAACGGAAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS CCA 72 bp | TCTGAGACGTTGCTCTGTTTGGCTTCACCCTTTACTTaGTTCATGGTTCCATCAGGACTCAGCTCCTTGTTT | + |
|
Preference number: 6 (lower is better) Translates to: SETLLCLASPFT*FMVPSGLSSLF Trigger: AAACAAGGAGCTGAGTCCTGATGGAACCATGAACCAAGTAAAGGGTGAAGCCAAACAGAGCAACGTCTCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS CAA 72 bp | TTCGATGTTTCCGTTCTCCATCAGCGAGTAGTTGGCTaGAATGCAGTTTCCTTTCTCAAAGCTCGCTGGGAT | + |
|
Preference number: 6 (lower is better) Translates to: FDVSVLHQRVVG*NAVSFLKARWD Trigger: ATCCCAGCGAGCTTTGAGAAAGGAAACTGCATTCAAGCCAACTACTCGCTGATGGAGAACGGAAACATCGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS CAA 72 bp | CCATCTTCCAAGATACTTTTTCACGTCAAAATTCTCTaGCACAGGAGGAGACGGGCATTTCCCAAGATGGAA | + |
|
Preference number: 6 (lower is better) Translates to: PSSKILFHVKIL*HRRRRAFPKME Trigger: TTCCATCTTGGGAAATGCCCGTCTCCTCCTGTGCAAGAGAATTTTGACGTGAAAAAGTATCTTGGAAGATGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
||
| CDS GCA 72 bp | CATCTTCCAAGATACTTTTTCACGTCAAAATTCTCTTaGACAGGAGGAGACGGGCATTTCCCAAGATGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: HLPRYFFTSKFS*TGGDGHFPRWK Trigger: TTTCCATCTTGGGAAATGCCCGTCTCCTCCTGTGCAAGAGAATTTTGACGTGAAAAAGTATCTTGGAAGATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115230.2 ENSMUST00000130560.8 |
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