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Pregenerated sensors for APOC4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074336

Ensembl transcript IDs: ENSMUST00000003071.10

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp ACAGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGTGGCTCTGCAGCCAGGCCTaGGTTCGGGGACCCAGGTCT +
Preference number: 4 (lower is better)
Translates to: TDQEQTPLLWVPGEGGTWLCSQA*VRGPRS
Trigger: AGACCTGGGTCCCCGAACTCAGGCCTGGCTGCAGAG...CCACGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR TCA 90 bp CAGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGTGGCCACAGAAAGGGAGACTaGTGGCAGGTCCCGTGGCCT +
Preference number: 4 (lower is better)
Translates to: QIKNKHLYCGCQGREVRGHRKGD*WQVPWP
Trigger: AGGCCACGGGACCTGCCATCAGTCTCCCTTTCTGTG...GCCACGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR GCA 90 bp GACACAGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGGGGCCCCAGAACCACTaGCATCTGTCCCTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: DTDQEQTPLLWVPGEGGTGPQNH*HLSLVL
Trigger: CAGAACCAGGGACAGATGGCAGTGGTTCTGGGGCCC...CGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCTGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR CCA 90 bp AGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGTGGCAGTCTGCATAAAGCCCTaGACAGCTCCAGGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: RSRTNTFIVGARGGRYVAVCIKP*TAPGPQ
Trigger: CTGGGGCCCTGGAGCTGTCCAGGGCTTTATGCAGAC...TGCCACGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR GCA 90 bp CAGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGTGGCCCTGAGTCCGGTCTTTaGAGAGCAGTCTGGGACACA +
Preference number: 4 (lower is better)
Translates to: QIKNKHLYCGCQGREVRGPESGL*RAVWDT
Trigger: TGTGTCCCAGACTGCTCTGCAAAGACCGGACTCAGG...GCCACGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR CCA 90 bp GATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGTGGCACACTGCCATCTGTCCCTaGTTCTGGTCACCAGTGGCT +
Preference number: 4 (lower is better)
Translates to: DQEQTPLLWVPGEGGTWHTAICP*FWSPVA
Trigger: AGCCACTGGTGACCAGAACCAGGGACAGATGGCAGT...GTGCCACGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR CCA 90 bp GGTGACACAGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTTTAGGAGGTGGTCTCTaGAGCTCTGCAGCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: GDTDQEQTPLLWVPGEGGLGGGL*SSAARP
Trigger: AGGCCTGGCTGCAGAGCTCCAGAGACCACCTCCTAA...ACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCTGTGTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR CCA 90 bp GACACAGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGATCTGTCCCTGGTTCTaGTCACCAGTGGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: DTDQEQTPLLWVPGEGGTICPWF*SPVAPP
Trigger: TGGTGGAGCCACTGGTGACCAGAACCAGGGACAGAT...CGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCTGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR CCA 90 bp ACACAGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGTGGTTCTGGTCACCAGTaGCTCCACCATCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: TQIKNKHLYCGCQGREVRGSGHQ*LHHLQH
Trigger: GTGTTGGAGATGGTGGAGCCACTGGTGACCAGAACC...ACGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR CCA 90 bp ACACAGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGTCTGGGACACAGGCTGTaGGTCTTGTTTAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: TQIKNKHLYCGCQGREVRLGHRL*VLFRRW
Trigger: CCACCTCCTAAACAAGACCCACAGCCTGTGTCCCAG...ACGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS-3UTR TCA 90 bp CACAGATCAAGAACAAACACCTTTATTGTGGGTGCCAGGGGAGGGAGGTACGTGTGGATGCTACAAAGCTaGCCAAGAACAGCACAGAAA +
Preference number: 4 (lower is better)
Translates to: HRSRTNTFIVGARGGRYVWMLQS*PRTAQK
Trigger: TTTCTGTGCTGTTCTTGGTCAGCTTTGTAGCATCCA...CACGTACCTCCCTCCCCTGGCACCCACAATAAAGGTGTTTGTTCTTGATCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS CCA 90 bp GGACAGCTCCAGGGCCCCAGAACCACTGCCATCTGTCCCTGGTTCTaGTCACCAGTGGCTCCACCATCTCCAACACCCTGGCCCTTACCA +
Preference number: 5 (lower is better)
Translates to: GQLQGPRTTAICPWF*SPVAPPSPTPWPLP
Trigger: TGGTAAGGGCCAGGGTGTTGGAGATGGTGGAGCCACTGGTGACCAGAACCAGGGACAGATGGCAGTGGTTCTGGGGCCCTGGAGCTGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS CCA 90 bp GCAGTCTGGGACACAGGCTGTGGGTCTTGTTTAGGAGGTGGTCTCTaGAGCTCTGCAGCCAGGCCTGAGTTCGGGGACCCAGGTCTTTCA +
Preference number: 5 (lower is better)
Translates to: AVWDTGCGSCLGGGL*SSAARPEFGDPGLS
Trigger: TGAAAGACCTGGGTCCCCGAACTCAGGCCTGGCTGCAGAGCTCCAGAGACCACCTCCTAAACAAGACCCACAGCCTGTGTCCCAGACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS CCA 72 bp TTCTGGTCACCAGTGGCTCCACCATCTCCAACACCCTaGCCCTTACCAGGCTCCAGCGGCTGCTCTCAGGGC +
Preference number: 6 (lower is better)
Translates to: FWSPVAPPSPTP*PLPGSSGCSQG
Trigger: GCCCTGAGAGCAGCCGCTGGAGCCTGGTAAGGGCCAGGGTGTTGGAGATGGTGGAGCCACTGGTGACCAGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS CCA 72 bp CAGGGCCCCAGAACCACTGCCATCTGTCCCTGGTTCTaGTCACCAGTGGCTCCACCATCTCCAACACCCTGG +
Preference number: 6 (lower is better)
Translates to: QGPRTTAICPWF*SPVAPPSPTPW
Trigger: CCAGGGTGTTGGAGATGGTGGAGCCACTGGTGACCAGAACCAGGGACAGATGGCAGTGGTTCTGGGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS GCA 72 bp ATAAAGCCCTGGACAGCTCCAGGGCCCCAGAACCACTaGCATCTGTCCCTGGTTCTGGTCACCAGTGGCTCC +
Preference number: 6 (lower is better)
Translates to: IKPWTAPGPQNH*HLSLVLVTSGS
Trigger: GGAGCCACTGGTGACCAGAACCAGGGACAGATGGCAGTGGTTCTGGGGCCCTGGAGCTGTCCAGGGCTTTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS CCA 72 bp GACACAGGCTGTGGGTCTTGTTTAGGAGGTGGTCTCTaGAGCTCTGCAGCCAGGCCTGAGTTCGGGGACCCA +
Preference number: 6 (lower is better)
Translates to: DTGCGSCLGGGL*SSAARPEFGDP
Trigger: TGGGTCCCCGAACTCAGGCCTGGCTGCAGAGCTCCAGAGACCACCTCCTAAACAAGACCCACAGCCTGTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS CCA 72 bp GAACCACTGCCATCTGTCCCTGGTTCTGGTCACCAGTaGCTCCACCATCTCCAACACCCTGGCCCTTACCAG +
Preference number: 6 (lower is better)
Translates to: EPLPSVPGSGHQ*LHHLQHPGPYQ
Trigger: CTGGTAAGGGCCAGGGTGTTGGAGATGGTGGAGCCACTGGTGACCAGAACCAGGGACAGATGGCAGTGGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS CCA 72 bp GTCCGGTCTTTGCAGAGCAGTCTGGGACACAGGCTGTaGGTCTTGTTTAGGAGGTGGTCTCTGGAGCTCTGC +
Preference number: 6 (lower is better)
Translates to: VRSLQSSLGHRL*VLFRRWSLELC
Trigger: GCAGAGCTCCAGAGACCACCTCCTAAACAAGACCCACAGCCTGTGTCCCAGACTGCTCTGCAAAGACCGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS TCA 72 bp TACAAAGCTGACCAAGAACAGCACAGAAAGGGAGACTaGTGGCAGGTCCCGTGGCCTGCACCTCAGCAGGGA +
Preference number: 6 (lower is better)
Translates to: YKADQEQHRKGD*WQVPWPAPQQG
Trigger: TCCCTGCTGAGGTGCAGGCCACGGGACCTGCCATCAGTCTCCCTTTCTGTGCTGTTCTTGGTCAGCTTTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10
CDS GCA 72 bp GCCAGGCGTGGGGCTCAGGCTTTCTGTAGACATGGATaGTACAAAGCTGACCAAGAACAGCACAGAAAGGGA +
Preference number: 6 (lower is better)
Translates to: ARRGAQAFCRHG*YKADQEQHRKG
Trigger: TCCCTTTCTGTGCTGTTCTTGGTCAGCTTTGTAGCATCCATGTCTACAGAAAGCCTGAGCCCCACGCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003071.10