Pregenerated sensors for APOC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032081Ensembl transcript IDs: ENSMUST00000034586.9, ENSMUST00000118649.8, ENSMUST00000121916.8, ENSMUST00000145672.2
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCCAGGTCCACCCCTTCAACAGGCCTAGCTCATCCCCATGCCCAGACGTCCAGGAGATCTAGGGAGGGGTaGAGACATGAGAACATACTT | + |
|
Preference number: 2 (lower is better) Translates to: PRSTPSTGLAHPHAQTSRRSREG*RHENIL Trigger: AAGTATGTTCTCATGTCTTCACCCCTCCCTAGATCT...CCTGGACGTCTGGGCATGGGGATGAGCTAGGCCTGTTGAAGGGGTGGACCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| 3UTR GCA 72 bp | CAGGTCCACCCCTTCAACAGGCCTAGCTCATCCCCATaGCCAGACGTCCAGGCACATGGGACACCCACTAAC | + |
|
Preference number: 3 (lower is better) Translates to: QVHPFNRPSSSP*PDVQAHGTPTN Trigger: GTTAGTGGGTGTCCCATGTGCCTGGACGTCTGGGCATGGGGATGAGCTAGGCCTGTTGAAGGGGTGGACCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| CDS-3UTR CCA 90 bp | GCTCATCCCCATGCCCAGACGTCCAGGCACATGGGACACCCACTAACAGCAGCTGTCCCAAGCCTTCTGTaGGCTAGATGGCTGGGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: AHPHAQTSRHMGHPLTAAVPSLL*ARWLGG Trigger: ACCACCCAGCCATCTAGCCCACAGAAGGCTTGGGAC...AGCTGCTGTTAGTGGGTGTCCCATGTGCCTGGACGTCTGGGCATGGGGATGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| CDS-3UTR TCA 90 bp | CAGGTCCACCCCTTCAACAGGCCTAGCTCATCCCCATGCCCAGACGTCCAGGCATTCAGGGATCTGAAGTaGTTGTCCATCCAGCCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: QVHPFNRPSSSPCPDVQAFRDLK*LSIQPL Trigger: CAGGGGCTGGATGGACAATCACTTCAGATCCCTGAA...TGCCTGGACGTCTGGGCATGGGGATGAGCTAGGCCTGTTGAAGGGGTGGACCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| CDS-3UTR CCA 90 bp | GCTCATCCCCATGCCCAGACGTCCAGGCACATGGGACACCCACTAACAGCAGCTCATCCTGGACCGTCTTaGAGGCTTGTTCCATGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: AHPHAQTSRHMGHPLTAAHPGPS*RLVPCS Trigger: GCTACATGGAACAAGCCTCCAAGACGGTCCAGGATG...AGCTGCTGTTAGTGGGTGTCCCATGTGCCTGGACGTCTGGGCATGGGGATGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| CDS-3UTR CCA 90 bp | ATGAGAACATACTTTCCCCTTAAAGCAACCTTCAGGGGCCACCTGGCAGGCCTGCATCCTGGACCGTCTTaGAGGCTTGTTCCATGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: MRTYFPLKATFRGHLAGLHPGPS*RLVPCS Trigger: GCTACATGGAACAAGCCTCCAAGACGGTCCAGGATG...CAGGCCTGCCAGGTGGCCCCTGAAGGTTGCTTTAAGGGGAAAGTATGTTCTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034586.9 ENSMUST00000121916.8 |
||
| CDS-3UTR CCA 90 bp | GGTGAAGACATGAGAACATACTTTCCCCTTAAAGCAACCTTCAGGGGCCACCTGTGTCCATCCAGCCCCTaGCCACCACAGCTATATCGG | + |
|
Preference number: 4 (lower is better) Translates to: GEDMRTYFPLKATFRGHLCPSSP*PPQLYR Trigger: CCGATATAGCTGTGGTGGCCAGGGGCTGGATGGACA...CAGGTGGCCCCTGAAGGTTGCTTTAAGGGGAAAGTATGTTCTCATGTCTTCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034586.9 ENSMUST00000121916.8 |
||
| CDS-3UTR CCA 90 bp | CACATGGGACACCCACTAACAGCAGCTTCTTATCCAGCTTTATTAGGGACAGCATGTCCATCCAGCCCCTaGCCACCACAGCTATATCGG | + |
|
Preference number: 4 (lower is better) Translates to: HMGHPLTAASYPALLGTACPSSP*PPQLYR Trigger: CCGATATAGCTGTGGTGGCCAGGGGCTGGATGGACA...TGCTGTCCCTAATAAAGCTGGATAAGAAGCTGCTGTTAGTGGGTGTCCCATGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| CDS-3UTR CCA 90 bp | ATGAGAACATACTTTCCCCTTAAAGCAACCTTCAGGGGCCACCTGGCAGGCCTGTCACGACTCAATAGCTaGAGTTGGTTGGTCCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: MRTYFPLKATFRGHLAGLSRLNS*SWLVLR Trigger: CCTGAGGACCAACCAACTCCAGCTATTGAGTCGTGA...CAGGCCTGCCAGGTGGCCCCTGAAGGTTGCTTTAAGGGGAAAGTATGTTCTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034586.9 ENSMUST00000121916.8 |
||
| CDS-3UTR TCA 90 bp | GGTGAAGACATGAGAACATACTTTCCCCTTAAAGCAACCTTCAGGGGCCACCTGTTCAGGGATCTGAAGTaGTTGTCCATCCAGCCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: GEDMRTYFPLKATFRGHLFRDLK*LSIQPL Trigger: CAGGGGCTGGATGGACAATCACTTCAGATCCCTGAA...CAGGTGGCCCCTGAAGGTTGCTTTAAGGGGAAAGTATGTTCTCATGTCTTCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034586.9 ENSMUST00000121916.8 |
||
| CDS-3UTR CCA 90 bp | GGGACACCCACTAACAGCAGCTTCTTATCCAGCTTTATTAGGGACAGCATGTTTTGTGGGCTAGATGGCTaGGTGGTGAGAGCTTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: GTPTNSSFLSSFIRDSMFCGLDG*VVRASP Trigger: GGGAGAAGCTCTCACCACCCAGCCATCTAGCCCACA...AAACATGCTGTCCCTAATAAAGCTGGATAAGAAGCTGCTGTTAGTGGGTGTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| CDS TCA 90 bp | GGCCACAGTGAGGAGCGTCCGGGGCTGCATGGCACCTACGTACCATaGGTCCCAAGCCTTCTGTGGGCTAGATGGCTGGGTGGTGAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GHSEERPGLHGTYVP*VPSLLWARWLGGES Trigger: GCTCTCACCACCCAGCCATCTAGCCCACAGAAGGCTTGGGACTCATGGTACGTAGGTGCCATGCAGCCCCGGACGCTCCTCACTGTGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| CDS GCA 90 bp | GATGCCAGGAGAGCCAAGAGGGCCACAGTGAGGAGCGTCCGGGGCTaGATGGCACCTACGTACCATGAGTCCCAAGCCTTCTGTGGGCTA | + |
|
Preference number: 5 (lower is better) Translates to: DARRAKRATVRSVRG*MAPTYHESQAFCGL Trigger: TAGCCCACAGAAGGCTTGGGACTCATGGTACGTAGGTGCCATGCAGCCCCGGACGCTCCTCACTGTGGCCCTCTTGGCTCTCCTGGCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| CDS-3UTR CAA 90 bp | GCTCATCCCCATGCCCAGACGTCCAGGCACATGGGACACCCACTAACAGCAGCTAATAGCTGGAGTTGGTaGGTCCTCAGGGTTAGAATC | + |
|
Preference number: 5 (lower is better) Translates to: AHPHAQTSRHMGHPLTAANSWSW*VLRVRI Trigger: GATTCTAACCCTGAGGACCAACCAACTCCAGCTATT...AGCTGCTGTTAGTGGGTGTCCCATGTGCCTGGACGTCTGGGCATGGGGATGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||
| CDS-3UTR CAA 90 bp | ATGAGAACATACTTTCCCCTTAAAGCAACCTTCAGGGGCCACCTGGCAGGCCTGAATAGCTGGAGTTGGTaGGTCCTCAGGGTTAGAATC | + |
|
Preference number: 5 (lower is better) Translates to: MRTYFPLKATFRGHLAGLNSWSW*VLRVRI Trigger: GATTCTAACCCTGAGGACCAACCAACTCCAGCTATT...CAGGCCTGCCAGGTGGCCCCTGAAGGTTGCTTTAAGGGGAAAGTATGTTCTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034586.9 ENSMUST00000121916.8 |
||
| CDS GCA 72 bp | CAGCAAGGATCCCTCTACCTCTTCAGCTCGGGCAGATaGCAGGAGAGCCAAGAGGGCCACAGTGAGGAGCGT | + |
|
Preference number: 6 (lower is better) Translates to: QQGSLYLFSSGR*QESQEGHSEER Trigger: ACGCTCCTCACTGTGGCCCTCTTGGCTCTCCTGGCATCTGCCCGAGCTGAAGAGGTAGAGGGATCCTTGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034586.9 ENSMUST00000118649.8 ENSMUST00000121916.8 ENSMUST00000145672.2 |
||
| CDS CCA 72 bp | TACCATGAGTCCCAAGCCTTCTGTGGGCTAGATGGCTaGGTGGTGAGAGCTTCTCCCTCCAGCTCTTTGTTT | + |
|
Preference number: 6 (lower is better) Translates to: YHESQAFCGLDG*VVRASPSSSLF Trigger: AAACAAAGAGCTGGAGGGAGAAGCTCTCACCACCCAGCCATCTAGCCCACAGAAGGCTTGGGACTCATGGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121916.8 |
||