Pregenerated sensors for APOC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002992Ensembl transcript IDs: ENSMUST00000003074.16, ENSMUST00000134116.8, ENSMUST00000142352.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GAACCTGGACTCATTTATTCTTTCACTGAAAGACTCTaGGCTCTAGTTGGGAGCAGGAAGGCGGGAGCAGCT | + |
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Preference number: 3 (lower is better) Translates to: EPGLIYSFTERL*ALVGSRKAGAA Trigger: AGCTGCTCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAATGAGTCCAGGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR GCA 90 bp | TATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGCGGGAGCACCAGCAGAGCCAGGCTaGCCGAGTCATCTTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: YSFTERLWALVGSRKAGAPAEPG*PSHLPG Trigger: ACCAGGAAGATGACTCGGGCAGCCTGGCTCTGCTGG...TGCTCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR GCA 90 bp | ATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGCGGGACCAGCAGAGCCAGGCTaGCCGAGTCATCTTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: IYSFTERLWALVGSRKAGPAEPG*PSHLPG Trigger: ACCAGGAAGATGACTCGGGCAGCCTGGCTCTGCTGG...TCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR GCA 90 bp | GGACTCATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGCCAGCAGAGCCAGGCTaGCCGAGTCATCTTCCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: GLIYSFTERLWALVGSRKPAEPG*PSHLPG Trigger: ACCAGGAAGATGACTCGGGCAGCCTGGCTCTGCTGG...CTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAATGAGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR TCA 90 bp | TATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGCGGGAGCATTCCCAACATCAGGATaGCCAGGAATAGAGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: YSFTERLWALVGSRKAGAFPTSG*PGIEPG Trigger: TCCTGGCTCTATTCCTGGTCATCCTGATGTTGGGAA...TGCTCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR CCA 90 bp | ATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGCGGGACTGCGTAAGTGCTCATaGCCGCCGAGCTTTTGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: IYSFTERLWALVGSRKAGLRKCS*PPSFCC Trigger: ACAGCAAAAGCTCGGCGGCCATGAGCACTTACGCAG...TCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR CCA 90 bp | TATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGCGGGAGCACTTTGGCAACCTCCTTaGCAGAGGTCCAGTAACTTA | + |
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Preference number: 4 (lower is better) Translates to: YSFTERLWALVGSRKAGALWQPP*QRSSNL Trigger: TAAGTTACTGGACCTCTGCCAAGGAGGTTGCCAAAG...TGCTCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR TCA 90 bp | ATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGCGGGATTCCCAACATCAGGATaGCCAGGAATAGAGCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: IYSFTERLWALVGSRKAGFPTSG*PGIEPG Trigger: TCCTGGCTCTATTCCTGGTCATCCTGATGTTGGGAA...TCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR GCA 90 bp | ATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGCGGGAGTCTGTAAAAATGCCTaGGTAAGTGCTCATGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: IYSFTERLWALVGSRKAGVCKNA*VSAHGR Trigger: GCGGCCATGAGCACTTACGCAGGCATTTTTACAGAC...TCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR CCA 90 bp | ATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGCGGGATCTTCCTGGTTCCCCTaGACCTCATTTCCCAACATC | + |
|
Preference number: 4 (lower is better) Translates to: IYSFTERLWALVGSRKAGSSWFP*TSFPNI Trigger: GATGTTGGGAAATGAGGTCCAGGGGAACCAGGAAGA...TCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR TCA 90 bp | GGACTCATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGTTCCCAACATCAGGATaGCCAGGAATAGAGCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GLIYSFTERLWALVGSRKFPTSG*PGIEPG Trigger: TCCTGGCTCTATTCCTGGTCATCCTGATGTTGGGAA...CTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAATGAGTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR GCA 90 bp | GGACTCATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGTCTGTAAAAATGCCTaGGTAAGTGCTCATGGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: GLIYSFTERLWALVGSRKVCKNA*VSAHGR Trigger: GCGGCCATGAGCACTTACGCAGGCATTTTTACAGAC...CTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAATGAGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR CCA 90 bp | GGACTCATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGTCTTCCTGGTTCCCCTaGACCTCATTTCCCAACATC | + |
|
Preference number: 4 (lower is better) Translates to: GLIYSFTERLWALVGSRKSSWFP*TSFPNI Trigger: GATGTTGGGAAATGAGGTCCAGGGGAACCAGGAAGA...CTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAATGAGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS-3UTR CCA 90 bp | ATTTATTCTTTCACTGAAAGACTCTGGGCTCTAGTTGGGAGCAGGAAGGCGGGACTTTGGCAACCTCCTTaGCAGAGGTCCAGTAACTTA | + |
|
Preference number: 4 (lower is better) Translates to: IYSFTERLWALVGSRKAGLWQPP*QRSSNL Trigger: TAAGTTACTGGACCTCTGCCAAGGAGGTTGCCAAAG...TCCCGCCTTCCTGCTCCCAACTAGAGCCCAGAGTCTTTCAGTGAAAGAATAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS GCA 90 bp | AGTAACTTAAGAGGGAGCCCTGCACCGTGCCCAGCAGAGCCAGGCTaGCCGAGTCATCTTCCTGGTTCCCCTGGACCTCATTTCCCAACA | + |
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Preference number: 5 (lower is better) Translates to: SNLRGSPAPCPAEPG*PSHLPGSPGPHFPT Trigger: TGTTGGGAAATGAGGTCCAGGGGAACCAGGAAGATGACTCGGGCAGCCTGGCTCTGCTGGGCACGGTGCAGGGCTCCCTCTTAAGTTACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS GCA 72 bp | AGAGGGAGCCCTGCACCGTGCCCAGCAGAGCCAGGCTaGCCGAGTCATCTTCCTGGTTCCCCTGGACCTCAT | + |
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Preference number: 6 (lower is better) Translates to: RGSPAPCPAEPG*PSHLPGSPGPH Trigger: ATGAGGTCCAGGGGAACCAGGAAGATGACTCGGGCAGCCTGGCTCTGCTGGGCACGGTGCAGGGCTCCCTCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS CCA 72 bp | GTGCCCAGCAGAGCCAGGCTGCCCGAGTCATCTTCCTaGTTCCCCTGGACCTCATTTCCCAACATCAGGATG | + |
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Preference number: 6 (lower is better) Translates to: VPSRARLPESSS*FPWTSFPNIRM Trigger: CATCCTGATGTTGGGAAATGAGGTCCAGGGGAACCAGGAAGATGACTCGGGCAGCCTGGCTCTGCTGGGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS GCA 72 bp | CCTCAGGAGAGTAAGGAGCTGGTCTGTAAAAATGCCTaGGTAAGTGCTCATGGCCGCCGAGCTTTTGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: PQESKELVCKNA*VSAHGRRAFAV Trigger: TACAGCAAAAGCTCGGCGGCCATGAGCACTTACGCAGGCATTTTTACAGACCAGCTCCTTACTCTCCTGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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| CDS CCA 72 bp | CTGAGTTTCTCATCCATGCTGATCGGGTATGTCTTCTaGTACAGGTCTTTGGCAACCTCCTTGGCAGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: LSFSSMLIGYVF*YRSLATSLAEV Trigger: GACCTCTGCCAAGGAGGTTGCCAAAGACCTGTACCAGAAGACATACCCGATCAGCATGGATGAGAAACTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003074.16 ENSMUST00000134116.8 ENSMUST00000142352.9 |
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