Pregenerated sensors for APOC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040564

Ensembl transcript IDs: ENSMUST00000045035.12, ENSMUST00000108451.4, ENSMUST00000207978.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	GATGAAGAGGGACCTGGCACATTACGTGGATGTCCTTaGTGCTTCGAGGTGGCCCGCCAGGTGCTCAGGAGA	+
Preference number: 3 (lower is better) Translates to: DEEGPGTLRGCP*CFEVARQVLRR Trigger: TCTCCTGAGCACCTGGCGGGCCACCTCGAAGCATCAAGGACATCCACGTAATGTGCCAGGTCCCTCTTCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207978.2
CDS-3UTR TCA 90 bp	ATGCTTCGAGGTGGCCCGCCAGGTGCTCAGGAGAACGTGGTCTTCAACTTCTCCTTTGCCAAATGCCTCTaGGAACCAGGCCCTTCCAAG	+
Preference number: 4 (lower is better) Translates to: MLRGGPPGAQENVVFNFSFAKCL*EPGPSK Trigger: CTTGGAAGGGCCTGGTTCTCAGAGGCATTTGGCAAA...GGAGAAGTTGAAGACCACGTTCTCCTGAGCACCTGGCGGGCCACCTCGAAGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207978.2
CDS CCA 90 bp	TTATCCGGTATGCTCTCCAATGTTCCGGACAAATCCGGGGCCGCCTaGGCGGGGGCTGGGCCTTCCAAGGTCATGGCTACGACCACAATC	+
Preference number: 5 (lower is better) Translates to: LSGMLSNVPDKSGAA*AGAGPSKVMATTTI Trigger: GATTGTGGTCGTAGCCATGACCTTGGAAGGCCCAGCCCCCGCCCAGGCGGCCCCGGATTTGTCCGGAACATTGGAGAGCATACCGGATAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS GCA 90 bp	CCTTGTCTTCCAAAGTGTTCCCAAACTCCTTCAGTTTATCCGGTATaGTCTCCAATGTTCCGGACAAATCCGGGGCCGCCTGGGCGGGGG	+
Preference number: 5 (lower is better) Translates to: PCLPKCSQTPSVYPV*SPMFRTNPGPPGRG Trigger: CCCCCGCCCAGGCGGCCCCGGATTTGTCCGGAACATTGGAGAGCATACCGGATAAACTGAAGGAGTTTGGGAACACTTTGGAAGACAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS TCA 90 bp	GGAGAACGTGGTCTTCAACTTCTCCTTCACTTTGCCAAATGCCTCTaGGAACCAGGCCCGGGTCTTGGTCAAAATTTCCTTCTGTTTGAT	+
Preference number: 5 (lower is better) Translates to: GERGLQLLLHFAKCL*EPGPGLGQNFLLFD Trigger: ATCAAACAGAAGGAAATTTTGACCAAGACCCGGGCCTGGTTCTCAGAGGCATTTGGCAAAGTGAAGGAGAAGTTGAAGACCACGTTCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS GCA 90 bp	CCGGGTCTTGGTCAAAATTTCCTTCTGTTTGATATGTTCAATGGCTaGCCGGGCCTTGTCTTCCAAAGTGTTCCCAAACTCCTTCAGTTT	+
Preference number: 5 (lower is better) Translates to: PGLGQNFLLFDMFNG*PGLVFQSVPKLLQF Trigger: AAACTGAAGGAGTTTGGGAACACTTTGGAAGACAAGGCCCGGGCAGCCATTGAACATATCAAACAGAAGGAAATTTTGACCAAGACCCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS CCA 72 bp	ATGCTCTCCAATGTTCCGGACAAATCCGGGGCCGCCTaGGCGGGGGCTGGGCCTTCCAAGGTCATGGCTACG	+
Preference number: 6 (lower is better) Translates to: MLSNVPDKSGAA*AGAGPSKVMAT Trigger: CGTAGCCATGACCTTGGAAGGCCCAGCCCCCGCCCAGGCGGCCCCGGATTTGTCCGGAACATTGGAGAGCAT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS GCA 72 bp	CCAAAGTGTTCCCAAACTCCTTCAGTTTATCCGGTATaGTCTCCAATGTTCCGGACAAATCCGGGGCCGCCT	+
Preference number: 6 (lower is better) Translates to: PKCSQTPSVYPV*SPMFRTNPGPP Trigger: AGGCGGCCCCGGATTTGTCCGGAACATTGGAGAGCATACCGGATAAACTGAAGGAGTTTGGGAACACTTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS CAA 90 bp	GCCTCTGAGAACCAGGCCCGGGTCTTGGTCAAAATTTCCTTCTGTTaGATATGTTCAATGGCTGCCCGGGCCTTGTCTTCCAAAGTGTTC	+
Preference number: 6 (lower is better) Translates to: ASENQARVLVKISFC*ICSMAARALSSKVF Trigger: GAACACTTTGGAAGACAAGGCCCGGGCAGCCATTGAACATATCAAACAGAAGGAAATTTTGACCAAGACCCGGGCCTGGTTCTCAGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS CAA 72 bp	AACCAGGCCCGGGTCTTGGTCAAAATTTCCTTCTGTTaGATATGTTCAATGGCTGCCCGGGCCTTGTCTTCC	+
Preference number: 6 (lower is better) Translates to: NQARVLVKISFC*ICSMAARALSS Trigger: GGAAGACAAGGCCCGGGCAGCCATTGAACATATCAAACAGAAGGAAATTTTGACCAAGACCCGGGCCTGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS GCA 72 bp	GGTCAAAATTTCCTTCTGTTTGATATGTTCAATGGCTaGCCGGGCCTTGTCTTCCAAAGTGTTCCCAAACTC	+
Preference number: 6 (lower is better) Translates to: GQNFLLFDMFNG*PGLVFQSVPKL Trigger: GAGTTTGGGAACACTTTGGAAGACAAGGCCCGGGCAGCCATTGAACATATCAAACAGAAGGAAATTTTGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS CAA 72 bp	TCCTTCTGTTTGATATGTTCAATGGCTGCCCGGGCCTaGTCTTCCAAAGTGTTCCCAAACTCCTTCAGTTTA	+
Preference number: 6 (lower is better) Translates to: SFCLICSMAARA*SSKVFPNSFSL Trigger: TAAACTGAAGGAGTTTGGGAACACTTTGGAAGACAAGGCCCGGGCAGCCATTGAACATATCAAACAGAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS CAA 90 bp	GTCAAAATTTCCTTCTGTTTGATATGTTCAATGGCTGCCCGGGCCTaGTCTTCCAAAGTGTTCCCAAACTCCTTCAGTTTATCCGGTATG	+
Preference number: 6 (lower is better) Translates to: VKISFCLICSMAARA*SSKVFPNSFSLSGM Trigger: CATACCGGATAAACTGAAGGAGTTTGGGAACACTTTGGAAGACAAGGCCCGGGCAGCCATTGAACATATCAAACAGAAGGAAATTTTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4
CDS CAA 72 bp	ACTTTGCCAAATGCCTCTGAGAACCAGGCCCGGGTCTaGGTCAAAATTTCCTTCTGTTTGATATGTTCAATG	+
Preference number: 6 (lower is better) Translates to: TLPNASENQARV*VKISFCLICSM Trigger: CATTGAACATATCAAACAGAAGGAAATTTTGACCAAGACCCGGGCCTGGTTCTCAGAGGCATTTGGCAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045035.12 ENSMUST00000108451.4