Pregenerated sensors for APOBEC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055547Ensembl transcript IDs: ENSMUST00000068875.5
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATGGAGTCCTGGGGTCCTaGCCCCTTGTGGGCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHGVLGS*PLVGCL Trigger: GAGGCAGCCCACAAGGGGTCAGGACCCCAGGACTCC...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATGGACGGCAGGAGTCCTaGGGTCCTGACCCCTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHGRQES*GPDPLW Trigger: CCACAAGGGGTCAGGACCCCAGGACTCCTGCCGTCC...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATCCTGGGGCCATAAGCTaGCCAGGCTCTGGAGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHPGAIS*PGSGEP Trigger: AGGCTCTCCAGAGCCTGGCCAGCTTATGGCCCCAGG...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTCCACCTCCTCCACTaGCCTGCCCGAGGGAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHFHLLH*PARGRF Trigger: AAACCTCCCTCGGGCAGGCCAGTGGAGGAGGTGGAA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATGGACTCAAAGTGACCTaGGGCCATAAGCTGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHGLKVT*GHKLAR Trigger: CCTGGCCAGCTTATGGCCCCAGGTCACTTTGAGTCC...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR GCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATGGGCAGGAGCAGCACTaGCTAAGGGGTGCTTTTCAA | + |
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Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHGQEQH*LRGAFQ Trigger: TTGAAAAGCACCCCTTAGGCAGTGCTGCTCCTGCCC...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATAAGCTGGCCAGGCTCTaGAGAGCCTTACGGTTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHKLARL*RALRFH Trigger: ATGGAACCGTAAGGCTCTCCAGAGCCTGGCCAGCTT...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR TCA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTTTGCAGACTCCTTCATaGCTTCCACCTCCTCCACTG | + |
|
Preference number: 4 (lower is better) Translates to: HQFISILVRPGRENSILFLQTPS*LPPPPL Trigger: CAGTGGAGGAGGTGGAAGTCATGAAGGAGTCTGCAA...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATGCCTTACCACGGTCCTaGGTTTTTGTGGGGTTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHALPRS*VFVGLN Trigger: GTTCAACCCCACAAAAACCCAGGACCGTGGTAAGGC...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR TCA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTGTGAGGTGTTTTGTTTaGGGGTACGTTGACCATGGG | + |
|
Preference number: 4 (lower is better) Translates to: HQFISILVRPGRENSILFVRCFV*GYVDHG Trigger: CCCATGGTCAACGTACCCTCAAACAAAACACCTCAC...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR TCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATATATTGGACTCAAAGTaGCCTGGGGCCATAAGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHILDSK*PGAISW Trigger: CCAGCTTATGGCCCCAGGTCACTTTGAGTCCAATAT...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR GCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTGCTGATGCAGCAGTaGTTAGCCTCGTTACAAGGG | + |
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Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHLLMQQ*LASLQG Trigger: CCCTTGTAACGAGGCTAAGCACTGCTGCATCAGCAA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR GCA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTGTGCTTTTCAAAAGCTaGCCAGGCTTCTCGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: HQFISILVRPGRENSILFVLFKS*PGFSVL Trigger: CAGAACCGAGAAGCCTGGGCAGCTTTTGAAAAGCAC...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CCA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTTGTGGTAAGGGCAGTTaGTGCAACCTAGAGAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: HQFISILVRPGRENSILFCGKGS*CNLEKG Trigger: GCCTTTCTCTAGGTTGCACCAACTGCCCTTACCACA...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR TCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATGCCAGTAGTAAGGTTTaGCTATTGTTCCACCTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHASSKV*LLFHLG Trigger: CCCAAGGTGGAACAATAGTCAAACCTTACTACTGGC...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR GCA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTTGCCTTTTGGCTCCTTaGAGACTCCTTCATGACTTC | + |
|
Preference number: 4 (lower is better) Translates to: HQFISILVRPGRENSILFCLLAP*RLLHDF Trigger: GAAGTCATGAAGGAGTCTGCAAGGAGCCAAAAGGCA...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR TCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTCAGAAGACCATCAGTaGAGTAAGGCTTTGCTGCTA | + |
|
Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHSEDHQ*SKALLL Trigger: TAGCAGCAAAGCCTTACTTCACTGATGGTCTTCTGA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTTTGTTTGCCTTTTaGCTCCTTGCAGACTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHFLFAF*LLADSF Trigger: GAAGGAGTCTGCAAGGAGCCAAAAGGCAAACAAAAA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 38% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR GCA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTGAAGTAAGGCTTTGCTaGTATGATGGAGTTGATTTC | + |
|
Preference number: 4 (lower is better) Translates to: HQFISILVRPGRENSILFEVRLC*YDGVDF Trigger: GAAATCAACTCCATCATAGCAGCAAAGCCTTACTTC...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR GCA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTTCTGTTCTTTTTGTTTaGCTTTTGGCTCCTTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: HQFISILVRPGRENSILFSVLFV*LLAPCR Trigger: TCTGCAAGGAGCCAAAAGGCAAACAAAAAGAACAGA...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CCA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTTTTGTATCAGGTTCTTaGAGGAACTTCTCAGCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: HQFISILVRPGRENSILFFVSGS*RNFSAH Trigger: ATGAGCTGAGAAGTTCCTCCAAGAACCTGATACAAA...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR GCA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTTCAAGAATAGCATaGCAAAGGCCACCACATATT | + |
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Preference number: 4 (lower is better) Translates to: FLTSIYLHLSQTWEREFHFSRIA*QRPPHI Trigger: AATATGTGGTGGCCTTTGGCATGCTATTCTTGAAAA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| 3UTR CAA 72 bp | CTTTCAGAAAGAGAGATAAAGTCCCTTCTGACAGTTTaGGATTATGTTGAAAACAGTGTCAATGATAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: LSEREIKSLLTV*DYVENSVNDRS Trigger: ACTCCTATCATTGACACTGTTTTCAACATAATCCAAAACTGTCAGAAGGGACTTTATCTCTCTTTCTGAAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CCA 90 bp | AGAATAGCATGCCAAAGGCCACCACATATTGGACTCAAAGTGACCTaGGGCCATAAGCTGGCCAGGCTCTGGAGAGCCTTACGGTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: RIACQRPPHIGLKVT*GHKLARLWRALRFH Trigger: ATGGAACCGTAAGGCTCTCCAGAGCCTGGCCAGCTTATGGCCCCAGGTCACTTTGAGTCCAATATGTGGTGGCCTTTGGCATGCTATTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 90 bp | AAGTGCCTTACCACGGTCCTGGGTTTTTGTGGGGTTGAACCCACATaGATTGGCGGTAGATCTCTGTTAGACACCAGCATGAGGACGGCA | + |
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Preference number: 5 (lower is better) Translates to: KCLTTVLGFCGVEPT*IGGRSLLDTSMRTA Trigger: TGCCGTCCTCATGCTGGTGTCTAACAGAGATCTACCGCCAATTCATGTGGGTTCAACCCCACAAAAACCCAGGACCGTGGTAAGGCACTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CCA 90 bp | CATATTGGACTCAAAGTGACCTGGGGCCATAAGCTGGCCAGGCTCTaGAGAGCCTTACGGTTCCATGCTGAGGTAGGAAACTGTTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: HIGLKVTWGHKLARL*RALRFHAEVGNCFS Trigger: TGAAAAACAGTTTCCTACCTCAGCATGGAACCGTAAGGCTCTCCAGAGCCTGGCCAGCTTATGGCCCCAGGTCACTTTGAGTCCAATATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 90 bp | TTCTGTTCTTTTTGTTTGCCTTTTGGCTCCTTGCAGACTCCTTCATaGCTTCCACCTCCTCCACTGGCCTGCCCGAGGGAGGTTTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: FCSFCLPFGSLQTPS*LPPPPLACPREVSL Trigger: TAAAGAAACCTCCCTCGGGCAGGCCAGTGGAGGAGGTGGAAGTCATGAAGGAGTCTGCAAGGAGCCAAAAGGCAAACAAAAAGAACAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTGGGGTCCTGACCCCTaGTGGGCTGCCTCTGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: FLTSIYLHLSQTWEREFHWGPDP*WAASGQ Trigger: CTGCCCAGAGGCAGCCCACAAGGGGTCAGGACCCCA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 90 bp | TGGCCTGCCCGAGGGAGGTTTCTTTACATCTTTGACTTTGAAGGATaGCAGTTGAAGCATATTCAAGTGCCTTACCACGGTCCTGGGTTT | + |
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Preference number: 5 (lower is better) Translates to: WPARGRFLYIFDFEG*QLKHIQVPYHGPGF Trigger: AAACCCAGGACCGTGGTAAGGCACTTGAATATGCTTCAACTGTCATCCTTCAAAGTCAAAGATGTAAAGAAACCTCCCTCGGGCAGGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 90 bp | CCCGAGGGAGGTTTCTTTACATCTTTGACTTTGAAGGATGACAGTTaGAGCATATTCAAGTGCCTTACCACGGTCCTGGGTTTTTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: PEGGFFTSLTLKDDS*SIFKCLTTVLGFCG Trigger: CCCACAAAAACCCAGGACCGTGGTAAGGCACTTGAATATGCTTCAACTGTCATCCTTCAAAGTCAAAGATGTAAAGAAACCTCCCTCGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 90 bp | CCTGTCAGCCAGGATTCTCCCAGCTATAAAGGGCTGAGGAACAGTTaGTCCAGAGATGTTGCTAACAAACTTTTCAAGAATAGCATGCCA | + |
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Preference number: 5 (lower is better) Translates to: PVSQDSPSYKGLRNS*SRDVANKLFKNSMP Trigger: TGGCATGCTATTCTTGAAAAGTTTGTTAGCAACATCTCTGGATCAACTGTTCCTCAGCCCTTTATAGCTGGGAGAATCCTGGCTGACAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS GCA 90 bp | ACAGTTGATCCAGAGATGTTGCTAACAAACTTTTCAAGAATAGCATaGCAAAGGCCACCACATATTGGACTCAAAGTGACCTGGGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: TVDPEMLLTNFSRIA*QRPPHIGLKVTWGH Trigger: ATGGCCCCAGGTCACTTTGAGTCCAATATGTGGTGGCCTTTGGCATGCTATTCTTGAAAAGTTTGTTAGCAACATCTCTGGATCAACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTGCTAGCAAGGCCCTTTaGTATCAGGTTCTTGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: HQFISILVRPGRENSILFASKAL*YQVLGG Trigger: TCCTCCAAGAACCTGATACAAAAGGGCCTTGCTAGC...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTTTGTTTGAGGGTACGTaGACCATGGGAATCCAAAAG | + |
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Preference number: 5 (lower is better) Translates to: HQFISILVRPGRENSILFLFEGT*TMGIQK Trigger: CTTTTGGATTCCCATGGTCAACGTACCCTCAAACAA...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTCTTTTTGTTTGCCTTTaGGCTCCTTGCAGACTCCTT | + |
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Preference number: 5 (lower is better) Translates to: HQFISILVRPGRENSILFLFVCL*APCRLL Trigger: AAGGAGTCTGCAAGGAGCCAAAAGGCAAACAAAAAG...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTTGTATCAGGTTCTaGGAGGAACTTCTCAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: FLTSIYLHLSQTWEREFHFCIRF*EELLSS Trigger: TGAGCTGAGAAGTTCCTCCAAGAACCTGATACAAAA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATAGGAAGTTGTACATTTaGCTGATGCAGCAGTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: FLTSIYLHLSQTWEREFHRKLYI*LMQQCL Trigger: TAAGCACTGCTGCATCAGCAAAATGTACAACTTCCT...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTCTGTTCTTTTTGTTaGCCTTTTGGCTCCTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: FLTSIYLHLSQTWEREFHFCSFC*PFGSLQ Trigger: CTGCAAGGAGCCAAAAGGCAAACAAAAAGAACAGAA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTGGCTTCTGTTCTTTTaGTTTGCCTTTTGGCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: FLTSIYLHLSQTWEREFHWLLFF*FAFWLL Trigger: AAGGAGCCAAAAGGCAAACAAAAAGAACAGAAGCCA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATCGGCAAATTCTTGGCTaGATAACTAGAGTCTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: FLTSIYLHLSQTWEREFHRQILG*ITRVCF Trigger: GAAACAGACTCTAGTTATCAAGCCAAGAATTTGCCG...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTCGTTACAAGGGGAGTaGTTGGAATACAGAATGATA | + |
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Preference number: 5 (lower is better) Translates to: FLTSIYLHLSQTWEREFHSLQGE*LEYRMI Trigger: TATCATTCTGTATTCCAACAACTCCCCTTGTAACGA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTACAAGGGGAGTTGTaGGAATACAGAATGATATGT | + |
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Preference number: 5 (lower is better) Translates to: FLTSIYLHLSQTWEREFHLQGEL*EYRMIC Trigger: ACATATCATTCTGTATTCCAACAACTCCCCTTGTAA...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | TTTTTAACATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATGTTGATCCAGAGATGTaGCTAACAAACTTTTCAAGA | + |
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Preference number: 5 (lower is better) Translates to: FLTSIYLHLSQTWEREFHVDPEM*LTNFSR Trigger: TCTTGAAAAGTTTGTTAGCAACATCTCTGGATCAAC...ATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTGGTTTCTTTACATCTTaGACTTTGAAGGATGACAGT | + |
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Preference number: 5 (lower is better) Translates to: HQFISILVRPGRENSILFGFFTS*TLKDDS Trigger: ACTGTCATCCTTCAAAGTCAAAGATGTAAAGAAACC...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS-3UTR CAA 90 bp | CATCAATTTATCTCCATCTTAGTCAGACCTGGGAGAGAGAATTCCATTTTATTTAGTCTGTTTCTTCCATaGGCTTCTGTTCTTTTTGTT | + |
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Preference number: 5 (lower is better) Translates to: HQFISILVRPGRENSILFSLFLP*ASVLFV Trigger: AACAAAAAGAACAGAAGCCAATGGAAGAAACAGACT...AAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 72 bp | GACACCAGCATGAGGACGGCAGGAGTCCTGGGGTCCTaGCCCCTTGTGGGCTGCCTCTGGGCAGGAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: DTSMRTAGVLGS*PLVGCLWAGAA Trigger: TGCTGCTCCTGCCCAGAGGCAGCCCACAAGGGGTCAGGACCCCAGGACTCCTGCCGTCCTCATGCTGGTGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CCA 72 bp | CTCAAAGTGACCTGGGGCCATAAGCTGGCCAGGCTCTaGAGAGCCTTACGGTTCCATGCTGAGGTAGGAAAC | + |
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Preference number: 6 (lower is better) Translates to: LKVTWGHKLARL*RALRFHAEVGN Trigger: GTTTCCTACCTCAGCATGGAACCGTAAGGCTCTCCAGAGCCTGGCCAGCTTATGGCCCCAGGTCACTTTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CCA 72 bp | CCTTGCAGACTCCTTCATGACTTCCACCTCCTCCACTaGCCTGCCCGAGGGAGGTTTCTTTACATCTTTGAC | + |
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Preference number: 6 (lower is better) Translates to: PCRLLHDFHLLH*PARGRFLYIFD Trigger: GTCAAAGATGTAAAGAAACCTCCCTCGGGCAGGCCAGTGGAGGAGGTGGAAGTCATGAAGGAGTCTGCAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 72 bp | GCTGGCCAGGCTCTGGAGAGCCTTACGGTTCCATGCTaGGGTAGGAAACTGTTTTTCAGTATGGTAGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: AGQALESLTVPC*GRKLFFSMVEL Trigger: CAGCTCTACCATACTGAAAAACAGTTTCCTACCTCAGCATGGAACCGTAAGGCTCTCCAGAGCCTGGCCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 72 bp | CCGTTCTTCTCAAATAGCATTGCTTCTGGGTGGTTGTaGCTCCCGGTGCAGTTGCTAGCAAGGCCCTTTTGT | + |
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Preference number: 6 (lower is better) Translates to: PFFSNSIASGWL*LPVQLLARPFC Trigger: ACAAAAGGGCCTTGCTAGCAACTGCACCGGGAGTCACAACCACCCAGAAGCAATGCTATTTGAGAAGAACGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CAA 72 bp | GTTGTGACTCCCGGTGCAGTTGCTAGCAAGGCCCTTTaGTATCAGGTTCTTGGAGGAACTTCTCAGCTCATA | + |
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Preference number: 6 (lower is better) Translates to: VVTPGAVASKAL*YQVLGGTSQLI Trigger: TATGAGCTGAGAAGTTCCTCCAAGAACCTGATACAAAAGGGCCTTGCTAGCAACTGCACCGGGAGTCACAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CAA 90 bp | TTCTGGGTGGTTGTGACTCCCGGTGCAGTTGCTAGCAAGGCCCTTTaGTATCAGGTTCTTGGAGGAACTTCTCAGCTCATAAAATGTGAG | + |
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Preference number: 6 (lower is better) Translates to: FWVVVTPGAVASKAL*YQVLGGTSQLIKCE Trigger: CTCACATTTTATGAGCTGAGAAGTTCCTCCAAGAACCTGATACAAAAGGGCCTTGCTAGCAACTGCACCGGGAGTCACAACCACCCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CCA 72 bp | ACAGTTGAAGCATATTCAAGTGCCTTACCACGGTCCTaGGTTTTTGTGGGGTTGAACCCACATGAATTGGCG | + |
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Preference number: 6 (lower is better) Translates to: TVEAYSSALPRS*VFVGLNPHELA Trigger: CGCCAATTCATGTGGGTTCAACCCCACAAAAACCCAGGACCGTGGTAAGGCACTTGAATATGCTTCAACTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 72 bp | TACCTGTCAGCCAGGATTCTCCCAGCTATAAAGGGCTaGGGAACAGTTGATCCAGAGATGTTGCTAACAAAC | + |
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Preference number: 6 (lower is better) Translates to: YLSARILPAIKG*GTVDPEMLLTN Trigger: GTTTGTTAGCAACATCTCTGGATCAACTGTTCCTCAGCCCTTTATAGCTGGGAGAATCCTGGCTGACAGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CAA 72 bp | AAAAGCTGCCCAGGCTTCTCGGTTCTGATTCTCTTTTaGTCGGCTCAGAAGACCATCAGTGAAGTAAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: KSCPGFSVLILF*SAQKTISEVRL Trigger: AAGCCTTACTTCACTGATGGTCTTCTGAGCCGACAAAAAGAGAATCAGAACCGAGAAGCCTGGGCAGCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CAA 72 bp | CTGATGCAGCAGTGCTTAGCCTCGTTACAAGGGGAGTaGTTGGAATACAGAATGATATGTCTGATGTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LMQQCLASLQGE*LEYRMICLMLL Trigger: CAGCAACATCAGACATATCATTCTGTATTCCAACAACTCCCCTTGTAACGAGGCTAAGCACTGCTGCATCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CAA 90 bp | GGCTTGATAACTAGAGTCTGTTTCTTCCATTGGCTTCTGTTCTTTTaGTTTGCCTTTTGGCTCCTTGCAGACTCCTTCATGACTTCCACC | + |
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Preference number: 6 (lower is better) Translates to: GLITRVCFFHWLLFF*FAFWLLADSFMTST Trigger: GGTGGAAGTCATGAAGGAGTCTGCAAGGAGCCAAAAGGCAAACAAAAAGAACAGAAGCCAATGGAAGAAACAGACTCTAGTTATCAAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS GCA 72 bp | TTCATCAGGAAGTTGTACATTTTGCTGATGCAGCAGTaGTTAGCCTCGTTACAAGGGGAGTTGTTGGAATAC | + |
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Preference number: 6 (lower is better) Translates to: FIRKLYILLMQQ*LASLQGELLEY Trigger: GTATTCCAACAACTCCCCTTGTAACGAGGCTAAGCACTGCTGCATCAGCAAAATGTACAACTTCCTGATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS TCA 72 bp | GGTTTCTTTACATCTTTGACTTTGAAGGATGACAGTTaGAGCATATTCAAGTGCCTTACCACGGTCCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: GFFTSLTLKDDS*SIFKCLTTVLG Trigger: ACCCAGGACCGTGGTAAGGCACTTGAATATGCTTCAACTGTCATCCTTCAAAGTCAAAGATGTAAAGAAACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS GCA 72 bp | CCAGAGATGTTGCTAACAAACTTTTCAAGAATAGCATaGCAAAGGCCACCACATATTGGACTCAAAGTGACC | + |
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Preference number: 6 (lower is better) Translates to: PEMLLTNFSRIA*QRPPHIGLKVT Trigger: GGTCACTTTGAGTCCAATATGTGGTGGCCTTTGGCATGCTATTCTTGAAAAGTTTGTTAGCAACATCTCTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CAA 90 bp | ATTTTGCTGATGCAGCAGTGCTTAGCCTCGTTACAAGGGGAGTTGTaGGAATACAGAATGATATGTCTGATGTTGCTGTTATGGAATATG | + |
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Preference number: 6 (lower is better) Translates to: ILLMQQCLASLQGEL*EYRMICLMLLLWNM Trigger: CATATTCCATAACAGCAACATCAGACATATCATTCTGTATTCCAACAACTCCCCTTGTAACGAGGCTAAGCACTGCTGCATCAGCAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS CAA 90 bp | TACATTTTGCTGATGCAGCAGTGCTTAGCCTCGTTACAAGGGGAGTaGTTGGAATACAGAATGATATGTCTGATGTTGCTGTTATGGAAT | + |
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Preference number: 6 (lower is better) Translates to: YILLMQQCLASLQGE*LEYRMICLMLLLWN Trigger: ATTCCATAACAGCAACATCAGACATATCATTCTGTATTCCAACAACTCCCCTTGTAACGAGGCTAAGCACTGCTGCATCAGCAAAATGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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| CDS GCA 72 bp | TTGTCGGCTCAGAAGACCATCAGTGAAGTAAGGCTTTaGTGCTATGATGGAGTTGATTTCATAAGTGTTATA | + |
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Preference number: 6 (lower is better) Translates to: LSAQKTISEVRL*CYDGVDFISVI Trigger: TATAACACTTATGAAATCAACTCCATCATAGCAGCAAAGCCTTACTTCACTGATGGTCTTCTGAGCCGACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068875.5 |
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