Pregenerated sensors for APOBEC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040694Ensembl transcript IDs: ENSMUST00000046549.5
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTAGAATCAGGAAGCCAGGTATGTCCTGGATGGCATCCGGGTCATTaGTCTGAGTGGCAGCAGGTAAAACTGGAAGGCCGAGCTCTGTTG | + |
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Preference number: 1 (lower is better) Translates to: VESGSQVCPGWHPGH*SEWQQVKLEGRALL Trigger: CAACAGAGCTCGGCCTTCCAGTTTTACCTGCTGCCACTCAGAGCAATGACCCGGATGCCATCCAGGACATACCTGGCTTCCTGATTCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR CCA 90 bp | GATGTCCAACTCCAAGTAGAATCAGGAAGCCAGGTATGTCCTGGATaGCATCCGGGTCATTGCTCTGAGTGGCAGCAGGTAAAACTGGAA | + |
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Preference number: 1 (lower is better) Translates to: DVQLQVESGSQVCPG*HPGHCSEWQQVKLE Trigger: TTCCAGTTTTACCTGCTGCCACTCAGAGCAATGACCCGGATGCCATCCAGGACATACCTGGCTTCCTGATTCTACTTGGAGTTGGACATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR CCA 90 bp | AGGTATGTTTTGAGTTCTCTGAGAGAGGGTCTTGTCCAGTGCAACTaGTTAGTGTCAGATGTCCAACTCCAAGTAGAATCAGGAAGCCAG | + |
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Preference number: 1 (lower is better) Translates to: RYVLSSLREGLVQCN*LVSDVQLQVESGSQ Trigger: CTGGCTTCCTGATTCTACTTGGAGTTGGACATCTGACACTAACCAGTTGCACTGGACAAGACCCTCTCTCAGAGAACTCAAAACATACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR TCA 90 bp | CATTTTCCTTCTTCTGATAGCCGTATTACAGAAGGCATGATTGAATaGATGAATGACGTCCCGAGGTATGTTTTGAGTTCTCTGAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: HFPSSDSRITEGMIE*MNDVPRYVLSSLRE Trigger: CTCTCTCAGAGAACTCAAAACATACCTCGGGACGTCATTCATTCATTCAATCATGCCTTCTGTAATACGGCTATCAGAAGAAGGAAAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR-3UTR TCA 90 bp | GTGTCAGATGTCCAACTCCAAGTAGAATCAGGAAGCCAGGTATGTCCTGGATGGTCCGGGTCATTGCTCTaGGTGGCAGCAGGTAAAACT | + |
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Preference number: 2 (lower is better) Translates to: VSDVQLQVESGSQVCPGWSGSLL*VAAGKT Trigger: AGTTTTACCTGCTGCCACTCAGAGCAATGACCCGGA...CCATCCAGGACATACCTGGCTTCCTGATTCTACTTGGAGTTGGACATCTGACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR-3UTR CCA 90 bp | AGAGAGGGTCTTGTCCAGTGCAACTGGTTAGTGTCAGATGTCCAACTCCAAGTACAGGTATGTCCTGGATaGCATCCGGGTCATTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: REGLVQCNWLVSDVQLQVQVCPG*HPGHCS Trigger: AGAGCAATGACCCGGATGCCATCCAGGACATACCTG...TACTTGGAGTTGGACATCTGACACTAACCAGTTGCACTGGACAAGACCCTCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR-3UTR CCA 90 bp | AGAGAGGGTCTTGTCCAGTGCAACTGGTTAGTGTCAGATGTCCAACTCCAAGTAGGTCATTGCTCTGAGTaGCAGCAGGTAAAACTGGAA | + |
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Preference number: 2 (lower is better) Translates to: REGLVQCNWLVSDVQLQVGHCSE*QQVKLE Trigger: TTCCAGTTTTACCTGCTGCCACTCAGAGCAATGACC...TACTTGGAGTTGGACATCTGACACTAACCAGTTGCACTGGACAAGACCCTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR GCA 72 bp | GGAAGCCAGGTATGTCCTGGATGGCATCCGGGTCATTaGTCTGAGTGGCAGCAGGTAAAACTGGAAGGCCGA | + |
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Preference number: 3 (lower is better) Translates to: GSQVCPGWHPGH*SEWQQVKLEGR Trigger: TCGGCCTTCCAGTTTTACCTGCTGCCACTCAGAGCAATGACCCGGATGCCATCCAGGACATACCTGGCTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR-3UTR CAA 90 bp | ATCTTTGTCTCAGGCAGCACCCCTGGAGAGGCAATAAGACCCTCCACCCCCAGGGTCCCGAGGTATGTTTaGAGTTCTCTGAGAGAGGGT | + |
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Preference number: 3 (lower is better) Translates to: IFVSGSTPGEAIRPSTPRVPRYV*SSLREG Trigger: ACCCTCTCTCAGAGAACTCAAAACATACCTCGGGAC...CCTGGGGGTGGAGGGTCTTATTGCCTCTCCAGGGGTGCTGCCTGAGACAAAGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR CCA 72 bp | CTCCAAGTAGAATCAGGAAGCCAGGTATGTCCTGGATaGCATCCGGGTCATTGCTCTGAGTGGCAGCAGGTA | + |
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Preference number: 3 (lower is better) Translates to: LQVESGSQVCPG*HPGHCSEWQQV Trigger: TACCTGCTGCCACTCAGAGCAATGACCCGGATGCCATCCAGGACATACCTGGCTTCCTGATTCTACTTGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR TCA 72 bp | AACACTTTTCTAGCTGTATTTCAAAGGTCTGTACCTTaGCTGAGGATCTTTGTCTCAGGCAGCACCCCTGGA | + |
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Preference number: 3 (lower is better) Translates to: NTFLAVFQRSVP*LRIFVSGSTPG Trigger: TCCAGGGGTGCTGCCTGAGACAAAGATCCTCAGTCAAGGTACAGACCTTTGAAATACAGCTAGAAAAGTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR GCA 72 bp | TATGTTTTGAGTTCTCTGAGAGAGGGTCTTGTCCAGTaGAACTGGTTAGTGTCAGATGTCCAACTCCAAGTA | + |
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Preference number: 3 (lower is better) Translates to: YVLSSLREGLVQ*NWLVSDVQLQV Trigger: TACTTGGAGTTGGACATCTGACACTAACCAGTTGCACTGGACAAGACCCTCTCTCAGAGAACTCAAAACATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR GCA 90 bp | GTCCAACTCCAAGTAGAATCAGGAAGCCAGGTATGTCCTGGATGGCATCCGGGTCCGGTCAGCGCAGGCTaGACAGGGGCTGGAGGACAC | + |
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Preference number: 4 (lower is better) Translates to: VQLQVESGSQVCPGWHPGPVSAG*TGAGGH Trigger: GTGTCCTCCAGCCCCTGTGCAGCCTGCGCTGACCGG...ACCCGGATGCCATCCAGGACATACCTGGCTTCCTGATTCTACTTGGAGTTGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR TCA 90 bp | GATCTTTGTCTCAGGCAGCACCCCTGGAGAGGCAATAAGACCCTCCACCCCCAGAAATCATCTCCATTCTaGGAGGCTGGCGCCGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: DLCLRQHPWRGNKTLHPQKSSPF*EAGAAA Trigger: GGCTGCGGCGCCAGCCTCTCAGAATGGAGATGATTT...CTGGGGGTGGAGGGTCTTATTGCCTCTCCAGGGGTGCTGCCTGAGACAAAGATC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR TCA 90 bp | AGATGTCCAACTCCAAGTAGAATCAGGAAGCCAGGTATGTCCTGGATGGCATCCCTGGCTCCTCCCACATaGAGAGCCGGCTCACCAGAA | + |
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Preference number: 4 (lower is better) Translates to: RCPTPSRIRKPGMSWMASLAPPT*RAGSPE Trigger: TTCTGGTGAGCCGGCTCTTCATGTGGGAGGAGCCAG...GGATGCCATCCAGGACATACCTGGCTTCCTGATTCTACTTGGAGTTGGACATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR CCA 90 bp | GATCTTTGTCTCAGGCAGCACCCCTGGAGAGGCAATAAGACCCTCCACCCCCAGATGTACTCGAAGTCCTaGGGTTTCATGATGCGAAGT | + |
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Preference number: 4 (lower is better) Translates to: DLCLRQHPWRGNKTLHPQMYSKS*GFMMRS Trigger: ACTTCGCATCATGAAACCCCAGGACTTCGAGTACAT...CTGGGGGTGGAGGGTCTTATTGCCTCTCCAGGGGTGCTGCCTGAGACAAAGATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR TCA 90 bp | GATGTCCAACTCCAAGTAGAATCAGGAAGCCAGGTATGTCCTGGATGGCATCCGTATAGGAAGTTCTCCTaGATGTCCTCCCAGGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: DVQLQVESGSQVCPGWHPYRKFS*MSSQGS Trigger: TGAGCCCTGGGAGGACATTCAGGAGAACTTCCTATA...CGGATGCCATCCAGGACATACCTGGCTTCCTGATTCTACTTGGAGTTGGACATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR GCA 90 bp | TGTCCAACTCCAAGTAGAATCAGGAAGCCAGGTATGTCCTGGATGGCATCCGGGGATTCACCCTCTTCTTaGTCCACAAAATTCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: CPTPSRIRKPGMSWMASGDSPSS*STKFCQ Trigger: CTGGCAGAATTTTGTGGAGCAAGAAGAGGGTGAATC...CCCGGATGCCATCCAGGACATACCTGGCTTCCTGATTCTACTTGGAGTTGGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR CCA 90 bp | AGAGAGGGTCTTGTCCAGTGCAACTGGTTAGTGTCAGATGTCCAACTCCAAGTAGGCCGGGTCGAAAGCTaGCAGGATGGTGTTAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: REGLVQCNWLVSDVQLQVGRVES*QDGVKE Trigger: TTCTTTAACACCATCCTGCCAGCTTTCGACCCGGCC...TACTTGGAGTTGGACATCTGACACTAACCAGTTGCACTGGACAAGACCCTCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR GCA 90 bp | CTCCAAGTAGAATCAGGAAGCCAGGTATGTCCTGGATGGCATCCGGGTCATTGCCTACTTCAGGATGTCTaGCAACTTCTCCTCATAGTA | + |
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Preference number: 4 (lower is better) Translates to: LQVESGSQVCPGWHPGHCLLQDV*QLLLIV Trigger: TACTATGAGGAGAAGTTGGCAGACATCCTGAAGTAG...GCAATGACCCGGATGCCATCCAGGACATACCTGGCTTCCTGATTCTACTTGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR GCA 90 bp | CTGAGAGAGGGTCTTGTCCAGTGCAACTGGTTAGTGTCAGATGTCCAACTCCAATGCTCCACAAAATTCTaGCAGATGTACTCGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: LREGLVQCNWLVSDVQLQCSTKF*QMYSKS Trigger: GGACTTCGAGTACATCTGGCAGAATTTTGTGGAGCA...TTGGAGTTGGACATCTGACACTAACCAGTTGCACTGGACAAGACCCTCTCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR TCA 90 bp | GTGCAACTGGTTAGTGTCAGATGTCCAACTCCAAGTAGAATCAGGAAGCCAGGTTCCACGTTCCGGAACTaGAACTTGAAGAAGTTGACT | + |
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Preference number: 4 (lower is better) Translates to: VQLVSVRCPTPSRIRKPGSTFRN*NLKKLT Trigger: AGTCAACTTCTTCAAGTTTCAGTTCCGGAACGTGGA...ACCTGGCTTCCTGATTCTACTTGGAGTTGGACATCTGACACTAACCAGTTGCAC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| 3UTR CAA 72 bp | GAACACTTTTCTAGCTGTATTTCAAAGGTCTGTACCTaGACTGAGGATCTTTGTCTCAGGCAGCACCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: EHFSSCISKVCT*TEDLCLRQHPW Trigger: CCAGGGGTGCTGCCTGAGACAAAGATCCTCAGTCAAGGTACAGACCTTTGAAATACAGCTAGAAAAGTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR CAA 90 bp | AGGCAGCACCCCTGGAGAGGCAATAAGACCCTCCACCCCCAGGTACCTGCTGCCCAGGGCTCAAAGGCCTaGGATTCACCCTCTTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: RQHPWRGNKTLHPQVPAAQGSKA*DSPSSC Trigger: GCAAGAAGAGGGTGAATCCAAGGCCTTTGAGCCCTG...GGCAGCAGGTACCTGGGGGTGGAGGGTCTTATTGCCTCTCCAGGGGTGCTGCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CCA 90 bp | TTTGCAGCCGGCCTCCTTCAGCTTTTTCAGAGCGGCCTGGACCTCTaGCTCCTCCCACATGAAGAGCCGGCTCACCAGAATGAGCAGACG | + |
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Preference number: 5 (lower is better) Translates to: FAAGLLQLFQSGLDL*LLPHEEPAHQNEQT Trigger: CGTCTGCTCATTCTGGTGAGCCGGCTCTTCATGTGGGAGGAGCCAGAGGTCCAGGCCGCTCTGAAAAAGCTGAAGGAGGCCGGCTGCAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR CAA 90 bp | GTCTCAGGCAGCACCCCTGGAGAGGCAATAAGACCCTCCACCCCCAGGTACCTGGTCTTGCTGAGGGTTTaGAGAATCCGGTCAGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: VSGSTPGEAIRPSTPRYLVLLRV*RIRSAQ Trigger: CTGCGCTGACCGGATTCTCAAAACCCTCAGCAAGAC...CAGGTACCTGGGGGTGGAGGGTCTTATTGCCTCTCCAGGGGTGCTGCCTGAGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CCA 90 bp | GGACACATACCAGGTGACATTGTACTTGAGGGCCGGGTCGAAAGCTaGCAGGATGGTGTTAAAGAAAGCCTCCTCGGCGTGGGCACCTGC | + |
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Preference number: 5 (lower is better) Translates to: GHIPGDIVLEGRVES*QDGVKESLLGVGTC Trigger: GCAGGTGCCCACGCCGAGGAGGCTTTCTTTAACACCATCCTGCCAGCTTTCGACCCGGCCCTCAAGTACAATGTCACCTGGTATGTGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR CAA 90 bp | GATCTTTGTCTCAGGCAGCACCCCTGGAGAGGCAATAAGACCCTCCACCCCCAGACATACCAGGTGACATaGTACTTGAGGGCCGGGTCG | + |
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Preference number: 5 (lower is better) Translates to: DLCLRQHPWRGNKTLHPQTYQVT*YLRAGS Trigger: CGACCCGGCCCTCAAGTACAATGTCACCTGGTATGT...CTGGGGGTGGAGGGTCTTATTGCCTCTCCAGGGGTGCTGCCTGAGACAAAGATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR CAA 90 bp | CTGAGAGAGGGTCTTGTCCAGTGCAACTGGTTAGTGTCAGATGTCCAACTCCAATTCATGATGCGAAGTTaGCAGCCGGCCTCCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: LREGLVQCNWLVSDVQLQFMMRS*QPASFS Trigger: GCTGAAGGAGGCCGGCTGCAAACTTCGCATCATGAA...TTGGAGTTGGACATCTGACACTAACCAGTTGCACTGGACAAGACCCTCTCTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR CAA 90 bp | AGAGAGGGTCTTGTCCAGTGCAACTGGTTAGTGTCAGATGTCCAACTCCAAGTACAGGTGACATTGTACTaGAGGGCCGGGTCGAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: REGLVQCNWLVSDVQLQVQVTLY*RAGSKA Trigger: AGCTTTCGACCCGGCCCTCAAGTACAATGTCACCTG...TACTTGGAGTTGGACATCTGACACTAACCAGTTGCACTGGACAAGACCCTCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR CAA 90 bp | GTCCAACTCCAAGTAGAATCAGGAAGCCAGGTATGTCCTGGATGGCATCCGGGTGGATTCACCCTCTTCTaGCTCCACAAAATTCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: VQLQVESGSQVCPGWHPGGFTLF*LHKILP Trigger: TGGCAGAATTTTGTGGAGCAAGAAGAGGGTGAATCC...ACCCGGATGCCATCCAGGACATACCTGGCTTCCTGATTCTACTTGGAGTTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS TCA 90 bp | AGAAAGGTCTTATTCCGCCCGGAACTGTATTCCACGTTCCGGAACTaGAACTTGAAGAAGTTGACTGGTAGCCGCACCCCAGTGACAATC | + |
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Preference number: 5 (lower is better) Translates to: RKVLFRPELYSTFRN*NLKKLTGSRTPVTI Trigger: GATTGTCACTGGGGTGCGGCTACCAGTCAACTTCTTCAAGTTTCAGTTCCGGAACGTGGAATACAGTTCCGGGCGGAATAAGACCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS GCA 90 bp | GGCTCAAAGGCCTTGGATTCACCCTCTTCTTGCTCCACAAAATTCTaGCAGATGTACTCGAAGTCCTGGGGTTTCATGATGCGAAGTTTG | + |
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Preference number: 5 (lower is better) Translates to: GSKALDSPSSCSTKF*QMYSKSWGFMMRSL Trigger: CAAACTTCGCATCATGAAACCCCAGGACTTCGAGTACATCTGGCAGAATTTTGTGGAGCAAGAAGAGGGTGAATCCAAGGCCTTTGAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS-3UTR CAA 90 bp | TCTTGTCCAGTGCAACTGGTTAGTGTCAGATGTCCAACTCCAAGTAGAATCAGGCGAAGGTTCTTAGTCTaGCTGAGGGTTTTGAGAATC | + |
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Preference number: 5 (lower is better) Translates to: SCPVQLVSVRCPTPSRIRRRFLV*LRVLRI Trigger: GATTCTCAAAACCCTCAGCAAGACTAAGAACCTTCG...CCTGATTCTACTTGGAGTTGGACATCTGACACTAACCAGTTGCACTGGACAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CCA 72 bp | TTGCAGCCGGCCTCCTTCAGCTTTTTCAGAGCGGCCTaGACCTCTGGCTCCTCCCACATGAAGAGCCGGCTC | + |
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Preference number: 6 (lower is better) Translates to: LQPASFSFFRAA*TSGSSHMKSRL Trigger: GAGCCGGCTCTTCATGTGGGAGGAGCCAGAGGTCCAGGCCGCTCTGAAAAAGCTGAAGGAGGCCGGCTGCAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 72 bp | GCTGCACAGGGGCTGGAGGACACATACCAGGTGACATaGTACTTGAGGGCCGGGTCGAAAGCTGGCAGGATG | + |
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Preference number: 6 (lower is better) Translates to: AAQGLEDTYQVT*YLRAGSKAGRM Trigger: CATCCTGCCAGCTTTCGACCCGGCCCTCAAGTACAATGTCACCTGGTATGTGTCCTCCAGCCCCTGTGCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 90 bp | TCAGCGCAGGCTGCACAGGGGCTGGAGGACACATACCAGGTGACATaGTACTTGAGGGCCGGGTCGAAAGCTGGCAGGATGGTGTTAAAG | + |
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Preference number: 6 (lower is better) Translates to: SAQAAQGLEDTYQVT*YLRAGSKAGRMVLK Trigger: CTTTAACACCATCCTGCCAGCTTTCGACCCGGCCCTCAAGTACAATGTCACCTGGTATGTGTCCTCCAGCCCCTGTGCAGCCTGCGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CCA 72 bp | TTCCAGGTTCTCCAAATCATCTCCATTCTGAGAGGCTaGCGCCGCAGCCTCAGCGGCCTCTTCCTTCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: FQVLQIISILRG*RRSLSGLFLLS Trigger: GCTCAGAAGGAAGAGGCCGCTGAGGCTGCGGCGCCAGCCTCTCAGAATGGAGATGATTTGGAGAACCTGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 90 bp | CAGGCTGCACAGGGGCTGGAGGACACATACCAGGTGACATTGTACTaGAGGGCCGGGTCGAAAGCTGGCAGGATGGTGTTAAAGAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: QAAQGLEDTYQVTLY*RAGSKAGRMVLKKA Trigger: GGCTTTCTTTAACACCATCCTGCCAGCTTTCGACCCGGCCCTCAAGTACAATGTCACCTGGTATGTGTCCTCCAGCCCCTGTGCAGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CCA 72 bp | CCAGGTGACATTGTACTTGAGGGCCGGGTCGAAAGCTaGCAGGATGGTGTTAAAGAAAGCCTCCTCGGCGTG | + |
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Preference number: 6 (lower is better) Translates to: PGDIVLEGRVES*QDGVKESLLGV Trigger: CACGCCGAGGAGGCTTTCTTTAACACCATCCTGCCAGCTTTCGACCCGGCCCTCAAGTACAATGTCACCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 72 bp | CAGGGGCTGGAGGACACATACCAGGTGACATTGTACTaGAGGGCCGGGTCGAAAGCTGGCAGGATGGTGTTA | + |
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Preference number: 6 (lower is better) Translates to: QGLEDTYQVTLY*RAGSKAGRMVL Trigger: TAACACCATCCTGCCAGCTTTCGACCCGGCCCTCAAGTACAATGTCACCTGGTATGTGTCCTCCAGCCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 90 bp | CTCACCAGAATGAGCAGACGAAGGTTCTTAGTCTTGCTGAGGGTTTaGAGAATCCGGTCAGCGCAGGCTGCACAGGGGCTGGAGGACACA | + |
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Preference number: 6 (lower is better) Translates to: LTRMSRRRFLVLLRV*RIRSAQAAQGLEDT Trigger: TGTGTCCTCCAGCCCCTGTGCAGCCTGCGCTGACCGGATTCTCAAAACCCTCAGCAAGACTAAGAACCTTCGTCTGCTCATTCTGGTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 90 bp | ATGAAGAGCCGGCTCACCAGAATGAGCAGACGAAGGTTCTTAGTCTaGCTGAGGGTTTTGAGAATCCGGTCAGCGCAGGCTGCACAGGGG | + |
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Preference number: 6 (lower is better) Translates to: MKSRLTRMSRRRFLV*LRVLRIRSAQAAQG Trigger: CCCCTGTGCAGCCTGCGCTGACCGGATTCTCAAAACCCTCAGCAAGACTAAGAACCTTCGTCTGCTCATTCTGGTGAGCCGGCTCTTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 72 bp | ATGAGCAGACGAAGGTTCTTAGTCTTGCTGAGGGTTTaGAGAATCCGGTCAGCGCAGGCTGCACAGGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: MSRRRFLVLLRV*RIRSAQAAQGL Trigger: CAGCCCCTGTGCAGCCTGCGCTGACCGGATTCTCAAAACCCTCAGCAAGACTAAGAACCTTCGTCTGCTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 90 bp | TTCTGCCAGATGTACTCGAAGTCCTGGGGTTTCATGATGCGAAGTTaGCAGCCGGCCTCCTTCAGCTTTTTCAGAGCGGCCTGGACCTCT | + |
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Preference number: 6 (lower is better) Translates to: FCQMYSKSWGFMMRS*QPASFSFFRAAWTS Trigger: AGAGGTCCAGGCCGCTCTGAAAAAGCTGAAGGAGGCCGGCTGCAAACTTCGCATCATGAAACCCCAGGACTTCGAGTACATCTGGCAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 72 bp | CGGCTCACCAGAATGAGCAGACGAAGGTTCTTAGTCTaGCTGAGGGTTTTGAGAATCCGGTCAGCGCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RLTRMSRRRFLV*LRVLRIRSAQA Trigger: AGCCTGCGCTGACCGGATTCTCAAAACCCTCAGCAAGACTAAGAACCTTCGTCTGCTCATTCTGGTGAGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 72 bp | ATGTACTCGAAGTCCTGGGGTTTCATGATGCGAAGTTaGCAGCCGGCCTCCTTCAGCTTTTTCAGAGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: MYSKSWGFMMRS*QPASFSFFRAA Trigger: GGCCGCTCTGAAAAAGCTGAAGGAGGCCGGCTGCAAACTTCGCATCATGAAACCCCAGGACTTCGAGTACAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CAA 90 bp | CTGAATGTCCTCCCAGGGCTCAAAGGCCTTGGATTCACCCTCTTCTaGCTCCACAAAATTCTGCCAGATGTACTCGAAGTCCTGGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: LNVLPGLKGLGFTLF*LHKILPDVLEVLGF Trigger: AAACCCCAGGACTTCGAGTACATCTGGCAGAATTTTGTGGAGCAAGAAGAGGGTGAATCCAAGGCCTTTGAGCCCTGGGAGGACATTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS TCA 72 bp | TTATTCCGCCCGGAACTGTATTCCACGTTCCGGAACTaGAACTTGAAGAAGTTGACTGGTAGCCGCACCCCA | + |
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Preference number: 6 (lower is better) Translates to: LFRPELYSTFRN*NLKKLTGSRTP Trigger: TGGGGTGCGGCTACCAGTCAACTTCTTCAAGTTTCAGTTCCGGAACGTGGAATACAGTTCCGGGCGGAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS GCA 72 bp | TCCCAGGGCTCAAAGGCCTTGGATTCACCCTCTTCTTaGTCCACAAAATTCTGCCAGATGTACTCGAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: SQGSKALDSPSS*STKFCQMYSKS Trigger: GGACTTCGAGTACATCTGGCAGAATTTTGTGGAGCAAGAAGAGGGTGAATCCAAGGCCTTTGAGCCCTGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS CCA 72 bp | AGTTCTCCTGAATGTCCTCCCAGGGCTCAAAGGCCTTaGATTCACCCTCTTCTTGCTCCACAAAATTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: SSPECPPRAQRP*IHPLLAPQNSA Trigger: GGCAGAATTTTGTGGAGCAAGAAGAGGGTGAATCCAAGGCCTTTGAGCCCTGGGAGGACATTCAGGAGAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS TCA 72 bp | AATTCTGCCAGATGTACTCGAAGTCCTGGGGTTTCATaGTGCGAAGTTTGCAGCCGGCCTCCTTCAGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: NSARCTRSPGVS*CEVCSRPPSAF Trigger: AAAAGCTGAAGGAGGCCGGCTGCAAACTTCGCATCATGAAACCCCAGGACTTCGAGTACATCTGGCAGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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| CDS GCA 72 bp | GCCTTGGATTCACCCTCTTCTTGCTCCACAAAATTCTaGCAGATGTACTCGAAGTCCTGGGGTTTCATGATG | + |
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Preference number: 6 (lower is better) Translates to: ALDSPSSCSTKF*QMYSKSWGFMM Trigger: CATCATGAAACCCCAGGACTTCGAGTACATCTGGCAGAATTTTGTGGAGCAAGAAGAGGGTGAATCCAAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046549.5 |
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