Pregenerated sensors for APOBEC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040613Ensembl transcript IDs: ENSMUST00000112585.8, ENSMUST00000112586.8, ENSMUST00000112587.11, ENSMUST00000203204.3, ENSMUST00000203309.3
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTAGCTCCAAGTGACTTTGACCTTGTCATTCTCCTGCCTCCACCATaGAACTACTGGGCTTACAGGAATGCACCACCTTACCTGACTCTT | + |
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Preference number: 1 (lower is better) Translates to: VAPSDFDLVILLPPP*NYWAYRNAPPYLTL Trigger: AAGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGTCAAAGTCACTTGGAGCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR CCA 90 bp | AGTGACTTTGACCTTGTCATTCTCCTGCCTCCACCATGCAACTACTaGGCTTACAGGAATGCACCACCTTACCTGACTCTTCAATTTCTA | + |
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Preference number: 1 (lower is better) Translates to: SDFDLVILLPPPCNY*AYRNAPPYLTLQFL Trigger: TAGAAATTGAAGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGTCAAAGTCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | TCACTGTGTAATTCAAGGCTAGCCTGGGTCTTGCAGTGTAGACCAGGCTGGCCTGAGATCTGGTGCCTCTaGCTCACAATTGCTGACATT | + |
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Preference number: 2 (lower is better) Translates to: SLCNSRLAWVLQCRPGWPEIWCL*LTIADI Trigger: AATGTCAGCAATTGTGAGGCAGAGGCACCAGATCTC...AGGCCAGCCTGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATTACACAGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CCA 90 bp | TCACTGTGTAATTCAAGGCTAGCCTGGGTCTTGCAGTGTAGACCAGGCTGGCCTAAACTCACAGAGATCTaGTGCCTCTGCCTCACAATT | + |
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Preference number: 2 (lower is better) Translates to: SLCNSRLAWVLQCRPGWPKLTEI*CLCLTI Trigger: AATTGTGAGGCAGAGGCACCAGATCTCTGTGAGTTT...AGGCCAGCCTGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATTACACAGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATACTCACAGAGATCTGGTaGCTCTGCCTCACAATTGCT | + |
|
Preference number: 2 (lower is better) Translates to: TFTGVPQCVHTTPSTDTILTEIW*LCLTIA Trigger: AGCAATTGTGAGGCAGAGGCACCAGATCTCTGTGAG...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGACCTTGTCATTCTCCTaGCTCCACCATGCAACTACT | + |
|
Preference number: 2 (lower is better) Translates to: GCWPLVYLEEFSTLNFYVTLSFS*LHHATT Trigger: AGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CCA 90 bp | GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGAATTCAAGGCTAGCCTaGGTCTTGCAGTGTAGACCA | + |
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Preference number: 2 (lower is better) Translates to: GCWPLVYLEEFSTLNFYVNSRLA*VLQCRP Trigger: TGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR TCA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATATACCCTACCCATGAATaGCACCTCCAGCTCAATTTC | + |
|
Preference number: 2 (lower is better) Translates to: TFTGVPQCVHTTPSTDTIYPTHE*HLQLNF Trigger: GAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTA...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCTGGGCTTACAGGAATaGACCACCTTACCTGACTCT | + |
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Preference number: 2 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTLGLQE*TTLPDS Trigger: AGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAG...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCACCTTGTCATTCTCCTaGCTCCACCATGCAACTACT | + |
|
Preference number: 2 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTTLSFS*LHHATT Trigger: AGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGT...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CCA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAAAACTCACAGAGATCTaGTGCCTCTGCCTCACAATT | + |
|
Preference number: 2 (lower is better) Translates to: TFTGVPQCVHTTPSTDTIKLTEI*CLCLTI Trigger: AATTGTGAGGCAGAGGCACCAGATCTCTGTGAGTTT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CCA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCAATTCAAGGCTAGCCTaGGTCTTGCAGTGTAGACCA | + |
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Preference number: 2 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTNSRLA*VLQCRP Trigger: TGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATT...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR TCA 90 bp | GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGATGCACCACCTTACCTaGCTCTTCAATTTCTACATT | + |
|
Preference number: 2 (lower is better) Translates to: GCWPLVYLEEFSTLNFYVMHHLT*LFNFYI Trigger: AATGTAGAAATTGAAGAGTCAGGTAAGGTGGTGCAT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR TCA 90 bp | GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCATACCCTACCCATGAATaGCACCTCCAGCTCAATTTC | + |
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Preference number: 2 (lower is better) Translates to: VYLEEFSTLNFYVLRLSSYPTHE*HLQLNF Trigger: GAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTA...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGAGATCTGGTGCCTCTaGCTCACAATTGCTGACATT | + |
|
Preference number: 2 (lower is better) Translates to: VYLEEFSTLNFYVLRLSSEIWCL*LTIADI Trigger: AATGTCAGCAATTGTGAGGCAGAGGCACCAGATCTC...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGACTCACAGAGATCTGGTaGCTCTGCCTCACAATTGCT | + |
|
Preference number: 2 (lower is better) Translates to: LTDGENKNLKSCPLTFTGLTEIW*LCLTIA Trigger: AGCAATTGTGAGGCAGAGGCACCAGATCTCTGTGAG...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGACTGGGCTTACAGGAATaGACCACCTTACCTGACTCT | + |
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Preference number: 2 (lower is better) Translates to: LTDGENKNLKSCPLTFTGLGLQE*TTLPDS Trigger: AGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAG...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CCA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATATTTCTAGATTCTTCATaGCAGTCACTCTTTAGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: TFTGVPQCVHTTPSTDTIFLDSS*QSLFSG Trigger: CCCACTAAAGAGTGACTGCCATGAAGAATCTAGAAA...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR TCA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGATACCCTACCCATGAATaGCACCTCCAGCTCAATTTC | + |
|
Preference number: 2 (lower is better) Translates to: LTDGENKNLKSCPLTFTGYPTHE*HLQLNF Trigger: GAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTA...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCTGGGTCATCAATGCTTaGTGTCAAGACAATACACAT | + |
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Preference number: 2 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTWVINA*CQDNTH Trigger: ATGTGTATTGTCTTGACAGCAAGCATTGATGACCCA...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CCA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCTTTCTAGATTCTTCATaGCAGTCACTCTTTAGTGGG | + |
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Preference number: 2 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTFLDSS*QSLFSG Trigger: CCCACTAAAGAGTGACTGCCATGAAGAATCTAGAAA...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CCA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGATGCCATTATAGCCTTTaGAGGCCAGGCAGACAAATG | + |
|
Preference number: 2 (lower is better) Translates to: LTDGENKNLKSCPLTFTGCHYSL*RPGRQM Trigger: CATTTGTCTGCCTGGCCTCCAAAGGCTATAATGGCA...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR TCA 90 bp | AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCATGCACCACCTTACCTaGCTCTTCAATTTCTACATT | + |
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Preference number: 2 (lower is better) Translates to: STLNFYVLRLSSDLLCSSMHHLT*LFNFYI Trigger: AATGTAGAAATTGAAGAGTCAGGTAAGGTGGTGCAT...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | GTAACTAGTACCCTACCCATGAATGACACCTCCAGCTCAATTTCTAGATTCTTCTGGGTCATCAATGCTTaGTGTCAAGACAATACACAT | + |
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Preference number: 2 (lower is better) Translates to: VTSTLPMNDTSSSISRFFWVINA*CQDNTH Trigger: ATGTGTATTGTCTTGACAGCAAGCATTGATGACCCA...GAAGAATCTAGAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTACTAGTTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CCA 90 bp | GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCATTTCTAGATTCTTCATaGCAGTCACTCTTTAGTGGG | + |
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Preference number: 2 (lower is better) Translates to: VYLEEFSTLNFYVLRLSSFLDSS*QSLFSG Trigger: CCCACTAAAGAGTGACTGCCATGAAGAATCTAGAAA...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR GCA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGATGGGTCATCAATGCTTaGTGTCAAGACAATACACAT | + |
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Preference number: 2 (lower is better) Translates to: LTDGENKNLKSCPLTFTGWVINA*CQDNTH Trigger: ATGTGTATTGTCTTGACAGCAAGCATTGATGACCCA...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CAA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCGCAAGGTGTTGGCTGTaGGCCCCTGGTGTACCTGGA | + |
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Preference number: 3 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTARCWL*APGVPG Trigger: TCCAGGTACACCAGGGGCCAACAGCCAACACCTTGC...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR GCA 72 bp | AGTGACTTTGACCTTGTCATTCTCCTGCCTCCACCATaGAACTACTGGGCTTACAGGAATGCACCACCTTAC | + |
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Preference number: 3 (lower is better) Translates to: SDFDLVILLPPP*NYWAYRNAPPY Trigger: GTAAGGTGGTGCATTCCTGTAAGCCCAGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGTCAAAGTCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CAA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATACAAGTGACTTTGACCTaGTCATTCTCCTGCCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: TFTGVPQCVHTTPSTDTIQVTLT*SFSCLH Trigger: GTGGAGGCAGGAGAATGACAAGGTCAAAGTCACTTG...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR TCA 72 bp | GCAACTACTGGGCTTACAGGAATGCACCACCTTACCTaGCTCTTCAATTTCTACATTCTTGATGGGGGTGGG | + |
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Preference number: 3 (lower is better) Translates to: ATTGLTGMHHLT*LFNFYILDGGG Trigger: CCCACCCCCATCAAGAATGTAGAAATTGAAGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAGTAGTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR TCA 72 bp | CTTTGGAGGCCAGGCAGACAAATGACTGAGCTTGTCTaGGTGACTATACTATGTAAGCTGGCAAGGTGTTGG | + |
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Preference number: 3 (lower is better) Translates to: LWRPGRQMTELV*VTILCKLARCW Trigger: CCAACACCTTGCCAGCTTACATAGTATAGTCACTCAGACAAGCTCAGTCATTTGTCTGCCTGGCCTCCAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CAA 90 bp | AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCGTGGGTCATCAATGCTaGCTGTCAAGACAATACACA | + |
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Preference number: 3 (lower is better) Translates to: STLNFYVLRLSSDLLCSSVGHQC*LSRQYT Trigger: TGTGTATTGTCTTGACAGCAAGCATTGATGACCCAC...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CAA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCTTTTTCTGGACATTCTaGGAATTAAACCAAGGGCCT | + |
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Preference number: 3 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTFFWTF*ELNQGP Trigger: AGGCCCTTGGTTTAATTCCAAGAATGTCCAGAAAAA...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR TCA 72 bp | CAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTaGCCTTCACAGGAGTGCCACAGTGTGTACATACAA | + |
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Preference number: 3 (lower is better) Translates to: QMERTKTLKVVL*PSQECHSVYIQ Trigger: TTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CAA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGGGTCATCAATGCTaGCTGTCAAGACAATACACA | + |
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Preference number: 3 (lower is better) Translates to: LTDGENKNLKSCPLTFTGVGHQC*LSRQYT Trigger: TGTGTATTGTCTTGACAGCAAGCATTGATGACCCAC...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR GCA 72 bp | ATTCTTCATGGCAGTCACTCTTTAGTGGGTCATCAATaGTTGCTGTCAAGACAATACACATACAAGGAGTCA | + |
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Preference number: 3 (lower is better) Translates to: ILHGSHSLVGHQ*LLSRQYTYKES Trigger: TGACTCCTTGTATGTGTATTGTCTTGACAGCAAGCATTGATGACCCACTAAAGAGTGACTGCCATGAAGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| 3UTR-3UTR CAA 90 bp | GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCATTTTTCTGGACATTCTaGGAATTAAACCAAGGGCCT | + |
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Preference number: 3 (lower is better) Translates to: VYLEEFSTLNFYVLRLSSFFWTF*ELNQGP Trigger: AGGCCCTTGGTTTAATTCCAAGAATGTCCAGAAAAA...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| CDS-3UTR CCA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATACTTCAACGTGGTTGCTaGTGTTTTGGCTCGTGTGTC | + |
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Preference number: 4 (lower is better) Translates to: TFTGVPQCVHTTPSTDTILQRGC*CFGSCV Trigger: GACACACGAGCCAAAACACCAGCAACCACGTTGAAG...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| CDS-3UTR CCA 90 bp | GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGAAGACTTCAAACTCGTaGGGCTCAATTCTTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: GCWPLVYLEEFSTLNFYVKTSNS*GSILLL Trigger: GAGGAGAAGAATTGAGCCCCACGAGTTTGAAGTCTT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| CDS-3UTR GCA 90 bp | TCACTGTGTAATTCAAGGCTAGCCTGGGTCTTGCAGTGTAGACCAGGCTGGCCTGTGGTGATAAAGCCGTaGTATGTAAATAAACAGAGT | + |
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Preference number: 4 (lower is better) Translates to: SLCNSRLAWVLQCRPGWPVVIKP*YVNKQS Trigger: ACTCTGTTTATTTACATAGCACGGCTTTATCACCAC...AGGCCAGCCTGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATTACACAGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| CDS-3UTR CCA 90 bp | AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCTTCTTCTCCTCAGAGTaGGATCAACAGCTACAGGGC | + |
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Preference number: 4 (lower is better) Translates to: STLNFYVLRLSSDLLCSSFFSSE*DQQLQG Trigger: GCCCTGTAGCTGTTGATCCCACTCTGAGGAGAAGAA...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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| CDS-3UTR CCA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAAAGTTGACTTCAACGTaGTTGCTGGTGTTTTGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: TFTGVPQCVHTTPSTDTIKLTST*LLVFWL Trigger: GAGCCAAAACACCAGCAACCACGTTGAAGTCAACTT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | CTTCAGACTTACTGTGTAGCTCCAAGTGACTTTGACCTTGTCATTCTCCTGCCTCCAAAGGAGATGGGGTaGTATCCTTTGGTAATGGCA | + |
|
Preference number: 4 (lower is better) Translates to: LQTYCVAPSDFDLVILLPPKEMG*YPLVMA Trigger: TGCCATTACCAAAGGATACCACCCCATCTCCTTTGG...AGGCAGGAGAATGACAAGGTCAAAGTCACTTGGAGCTACACAGTAAGTCTGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCAAAGGAGATGGGGTaGTATCCTTTGGTAATGGCA | + |
|
Preference number: 4 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTPKEMG*YPLVMA Trigger: TGCCATTACCAAAGGATACCACCCCATCTCCTTTGG...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR TCA 90 bp | GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGATTTTTCTAAGAAGTTaGCTTCAACGTGGTTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GCWPLVYLEEFSTLNFYVIFLRS*LQRGCW Trigger: CCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAAT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR TCA 90 bp | CTTCAGACTTACTGTGTAGCTCCAAGTGACTTTGACCTTGTCATTCTCCTGCCTGTGGAAGTCCTAAAATaGTGCAGTAGAGCTCCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: LQTYCVAPSDFDLVILLPVEVLK*CSRAPV Trigger: TACTGGAGCTCTACTGCATCATTTTAGGACTTCCAC...AGGCAGGAGAATGACAAGGTCAAAGTCACTTGGAGCTACACAGTAAGTCTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | TGTCAAGACAATACACATACAAGGAGTCATTTCATCCATGCCCAACTCCCAGAACTTCAACGTGGTTGCTaGTGTTTTGGCTCGTGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: CQDNTHTRSHFIHAQLPELQRGC*CFGSCV Trigger: GACACACGAGCCAAAACACCAGCAACCACGTTGAAG...TTCTGGGAGTTGGGCATGGATGAAATGACTCCTTGTATGTGTATTGTCTTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCAAGTTGACTTCAACGTaGTTGCTGGTGTTTTGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTKLTST*LLVFWL Trigger: GAGCCAAAACACCAGCAACCACGTTGAAGTCAACTT...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGATTCTTCTCCTCAGAGTaGGATCAACAGCTACAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LTDGENKNLKSCPLTFTGFFSSE*DQQLQG Trigger: GCCCTGTAGCTGTTGATCCCACTCTGAGGAGAAGAA...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCAAGACTTCAAACTCGTaGGGCTCAATTCTTCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: STLNFYVLRLSSDLLCSSKTSNS*GSILLL Trigger: GAGGAGAAGAATTGAGCCCCACGAGTTTGAAGTCTT...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGACTTCAACGTGGTTGCTaGTGTTTTGGCTCGTGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: LTDGENKNLKSCPLTFTGLQRGC*CFGSCV Trigger: GACACACGAGCCAAAACACCAGCAACCACGTTGAAG...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCAAGTTGACTTCAACGTaGTTGCTGGTGTTTTGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: STLNFYVLRLSSDLLCSSKLTST*LLVFWL Trigger: GAGCCAAAACACCAGCAACCACGTTGAAGTCAACTT...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCACCAAAGGAGATGGGGTaGTATCCTTTGGTAATGGCA | + |
|
Preference number: 4 (lower is better) Translates to: VYLEEFSTLNFYVLRLSSPKEMG*YPLVMA Trigger: TGCCATTACCAAAGGATACCACCCCATCTCCTTTGG...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR TCA 90 bp | CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCATTTTTCTAAGAAGTTaGCTTCAACGTGGTTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LKSCPLTFTGVPQCVHTTIFLRS*LQRGCW Trigger: CCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAAT...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| 3UTR CAA 72 bp | TACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTaGAGGCTGTCTTCAGACTTACTGTGTAGCTCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: YLEEFSTLNFYV*RLSSDLLCSSK Trigger: CTTGGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR TCA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGGAAGTCCTAAAATaGTGCAGTAGAGCTCCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: LTDGENKNLKSCPLTFTGVEVLK*CSRAPV Trigger: TACTGGAGCTCTACTGCATCATTTTAGGACTTCCAC...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CCA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGAAAGACTTCAAACTCGTaGGGCTCAATTCTTCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: LTDGENKNLKSCPLTFTGKTSNS*GSILLL Trigger: GAGGAGAAGAATTGAGCCCCACGAGTTTGAAGTCTT...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| 3UTR CAA 72 bp | CTTCATGGCAGTCACTCTTTAGTGGGTCATCAATGCTaGCTGTCAAGACAATACACATACAAGGAGTCATTT | + |
|
Preference number: 4 (lower is better) Translates to: LHGSHSLVGHQC*LSRQYTYKESF Trigger: AAATGACTCCTTGTATGTGTATTGTCTTGACAGCAAGCATTGATGACCCACTAAAGAGTGACTGCCATGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR GCA 90 bp | AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCGTGGTGATAAAGCCGTaGTATGTAAATAAACAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: STLNFYVLRLSSDLLCSSVVIKP*YVNKQS Trigger: ACTCTGTTTATTTACATAGCACGGCTTTATCACCAC...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS CCA 90 bp | GTCTCTTTCCGAAGCTCCCGGGGGTCAAAGAAGACTTCAAACTCGTaGGGCTCAATTCTTCTCCTCAGAGTGGGATCAACAGCTACAGGG | + |
|
Preference number: 5 (lower is better) Translates to: VSFRSSRGSKKTSNS*GSILLLRVGSTATG Trigger: CCCTGTAGCTGTTGATCCCACTCTGAGGAGAAGAATTGAGCCCCACGAGTTTGAAGTCTTCTTTGACCCCCGGGAGCTTCGGAAAGAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 ENSMUST00000203204.3 ENSMUST00000203309.3 |
||
| CDS-3UTR CAA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGT | + |
|
Preference number: 5 (lower is better) Translates to: TFTGVPQCVHTTPSTDTIKVPES*AVSLIR Trigger: ACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | GTAACTAGTACCCTACCCATGAATGACACCTCCAGCTCAATTTCTAGATTCTTCAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGT | + |
|
Preference number: 5 (lower is better) Translates to: VTSTLPMNDTSSSISRFFKVPES*AVSLIR Trigger: ACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTT...GAAGAATCTAGAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTACTAGTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGT | + |
|
Preference number: 5 (lower is better) Translates to: VYLEEFSTLNFYVLRLSSKVPES*AVSLIR Trigger: ACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTT...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAACAGATGGGGGTACCTaGGCCAATAAGCTTCGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: TFTGVPQCVHTTPSTDTITDGGT*ANKLRL Trigger: CAAACGAAGCTTATTGGCCAAGGTACCCCCATCTGT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCTGCCTTCCACCCCAGTaGATCTCATACAGCAGACAG | + |
|
Preference number: 5 (lower is better) Translates to: STLNFYVLRLSSDLLCSSCLPPQ*ISYSRQ Trigger: CTGTCTGCTGTATGAGATCAACTGGGGTGGAAGGCA...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | CTTCAGACTTACTGTGTAGCTCCAAGTGACTTTGACCTTGTCATTCTCCTGCCTACAGATGGGGGTACCTaGGCCAATAAGCTTCGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: LQTYCVAPSDFDLVILLPTDGGT*ANKLRL Trigger: CAAACGAAGCTTATTGGCCAAGGTACCCCCATCTGT...AGGCAGGAGAATGACAAGGTCAAAGTCACTTGGAGCTACACAGTAAGTCTGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAATGGGGTGGTATCCTTaGGTAATGGCAGGTTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: TFTGVPQCVHTTPSTDTIMGWYP*VMAGLK Trigger: CTTCAAACCTGCCATTACCAAAGGATACCACCCCAT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | TGTCAAGACAATACACATACAAGGAGTCATTTCATCCATGCCCAACTCCCAGAATGCCTTCCACCCCAGTaGATCTCATACAGCAGACAG | + |
|
Preference number: 5 (lower is better) Translates to: CQDNTHTRSHFIHAQLPECLPPQ*ISYSRQ Trigger: CTGTCTGCTGTATGAGATCAACTGGGGTGGAAGGCA...TTCTGGGAGTTGGGCATGGATGAAATGACTCCTTGTATGTGTATTGTCTTGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGAATTTTTCTAAGAAGTaGACTTCAACGTGGTTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: GCWPLVYLEEFSTLNFYVNFSKK*TSTWLL Trigger: CAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAAATTTTTCTAAGAAGTaGACTTCAACGTGGTTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: TFTGVPQCVHTTPSTDTINFSKK*TSTWLL Trigger: CAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS-3UTR CAA 90 bp | CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGAATGGGGTGGTATCCTTaGGTAATGGCAGGTTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LTDGENKNLKSCPLTFTGMGWYP*VMAGLK Trigger: CTTCAAACCTGCCATTACCAAAGGATACCACCCCAT...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS CCA 90 bp | AAGTATCTTTCTGTAGTAAATTTTTCTAAGAAGTTGACTTCAACGTaGTTGCTGGTGTTTTGGCTCGTGTGTCGCCAGACACTGTGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: KYLSVVNFSKKLTST*LLVFWLVCRQTLCL Trigger: AAGGCACAGTGTCTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATTTACTACAGAAAGATACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 ENSMUST00000203204.3 ENSMUST00000203309.3 |
||
| CDS-3UTR CAA 90 bp | GTAACTAGTACCCTACCCATGAATGACACCTCCAGCTCAATTTCTAGATTCTTCAATTTTTCTAAGAAGTaGACTTCAACGTGGTTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: VTSTLPMNDTSSSISRFFNFSKK*TSTWLL Trigger: CAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATT...GAAGAATCTAGAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTACTAGTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS TCA 72 bp | TCGTGTGTCGCCAGACACTGTGCCTTCCACCCCAGTTaGTCTCATACAGCAGACAGGTCTCTTTCCGAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: SCVARHCAFHPS*SHTADRSLSEA Trigger: AGCTTCGGAAAGAGACCTGTCTGCTGTATGAGATCAACTGGGGTGGAAGGCACAGTGTCTGGCGACACACGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 ENSMUST00000203204.3 ENSMUST00000203309.3 |
||
| CDS CAA 72 bp | GATAGTCACACCGCTGCTAATAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGTGTGGTGATAAAGCCG | + |
|
Preference number: 6 (lower is better) Translates to: DSHTAANKVPES*AVSLIRVVIKP Trigger: CGGCTTTATCACCACACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTTATTAGCAGCGGTGTGACTATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS CCA 72 bp | TCTAAGAAGTTGACTTCAACGTGGTTGCTGGTGTTTTaGCTCGTGTGTCGCCAGACACTGTGCCTTCCACCC | + |
|
Preference number: 6 (lower is better) Translates to: SKKLTSTWLLVF*LVCRQTLCLPP Trigger: GGGTGGAAGGCACAGTGTCTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 ENSMUST00000203204.3 ENSMUST00000203309.3 |
||
| CDS CAA 90 bp | CATGATCTGGATAGTCACACCGCTGCTAATAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGTGTGGTGATAAAGCCGTGCTATGTA | + |
|
Preference number: 6 (lower is better) Translates to: HDLDSHTAANKVPES*AVSLIRVVIKPCYV Trigger: TACATAGCACGGCTTTATCACCACACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTTATTAGCAGCGGTGTGACTATCCAGATCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS GCA 72 bp | TTGGCGGTTTCGCTGATCCGTGTGGTGATAAAGCCGTaGTATGTAAATAAACAGAGTTACATAGGGGTGTCG | + |
|
Preference number: 6 (lower is better) Translates to: LAVSLIRVVIKP*YVNKQSYIGVS Trigger: CGACACCCCTATGTAACTCTGTTTATTTACATAGCACGGCTTTATCACCACACGGATCAGCGAAACCGCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS CAA 72 bp | GTAGTAAATTTTTCTAAGAAGTTGACTTCAACGTGGTaGCTGGTGTTTTGGCTCGTGTGTCGCCAGACACTG | + |
|
Preference number: 6 (lower is better) Translates to: VVNFSKKLTSTW*LVFWLVCRQTL Trigger: CAGTGTCTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATTTACTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 ENSMUST00000203204.3 ENSMUST00000203309.3 |
||
| CDS CAA 72 bp | CAACCCTGTAGCCCAAAGGAGATGGGGTGGTATCCTTaGGTAATGGCAGGTTTGAAGAGTAATTGTGAAAAA | + |
|
Preference number: 6 (lower is better) Translates to: QPCSPKEMGWYP*VMAGLKSNCEK Trigger: TTTTTCACAATTACTCTTCAAACCTGCCATTACCAAAGGATACCACCCCATCTCCTTTGGGCTACAGGGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS CAA 90 bp | TATCTTTCTGTAGTAAATTTTTCTAAGAAGTTGACTTCAACGTGGTaGCTGGTGTTTTGGCTCGTGTGTCGCCAGACACTGTGCCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: YLSVVNFSKKLTSTW*LVFWLVCRQTLCLP Trigger: TGGAAGGCACAGTGTCTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATTTACTACAGAAAGATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 ENSMUST00000203204.3 ENSMUST00000203309.3 |
||
| CDS CAA 90 bp | GTGTTCGGACGAAAGTATCTTTCTGTAGTAAATTTTTCTAAGAAGTaGACTTCAACGTGGTTGCTGGTGTTTTGGCTCGTGTGTCGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: VFGRKYLSVVNFSKK*TSTWLLVFWLVCRQ Trigger: CTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATTTACTACAGAAAGATACTTTCGTCCGAACAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 ENSMUST00000203204.3 ENSMUST00000203309.3 |
||
| CDS CAA 90 bp | TGTAGCCCAAAGGAGATGGGGTGGTATCCTTTGGTAATGGCAGGTTaGAAGAGTAATTGTGAAAAACGTGAGTTGAGGTTGCTTTCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: CSPKEMGWYPLVMAG*KSNCEKRELRLLSS Trigger: AGAAGAAAGCAACCTCAACTCACGTTTTTCACAATTACTCTTCAAACCTGCCATTACCAAAGGATACCACCCCATCTCCTTTGGGCTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
||
| CDS CAA 72 bp | AAGGAGATGGGGTGGTATCCTTTGGTAATGGCAGGTTaGAAGAGTAATTGTGAAAAACGTGAGTTGAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: KEMGWYPLVMAG*KSNCEKRELRL Trigger: CAACCTCAACTCACGTTTTTCACAATTACTCTTCAAACCTGCCATTACCAAAGGATACCACCCCATCTCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112585.8 ENSMUST00000112586.8 ENSMUST00000112587.11 |
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