RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APOBEC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040613

Ensembl transcript IDs: ENSMUST00000112585.8, ENSMUST00000112586.8, ENSMUST00000112587.11, ENSMUST00000203204.3, ENSMUST00000203309.3

Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTAGCTCCAAGTGACTTTGACCTTGTCATTCTCCTGCCTCCACCATaGAACTACTGGGCTTACAGGAATGCACCACCTTACCTGACTCTT +
Preference number: 1 (lower is better)
Translates to: VAPSDFDLVILLPPP*NYWAYRNAPPYLTL
Trigger: AAGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGTCAAAGTCACTTGGAGCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR CCA 90 bp AGTGACTTTGACCTTGTCATTCTCCTGCCTCCACCATGCAACTACTaGGCTTACAGGAATGCACCACCTTACCTGACTCTTCAATTTCTA +
Preference number: 1 (lower is better)
Translates to: SDFDLVILLPPPCNY*AYRNAPPYLTLQFL
Trigger: TAGAAATTGAAGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGTCAAAGTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp TCACTGTGTAATTCAAGGCTAGCCTGGGTCTTGCAGTGTAGACCAGGCTGGCCTGAGATCTGGTGCCTCTaGCTCACAATTGCTGACATT +
Preference number: 2 (lower is better)
Translates to: SLCNSRLAWVLQCRPGWPEIWCL*LTIADI
Trigger: AATGTCAGCAATTGTGAGGCAGAGGCACCAGATCTC...AGGCCAGCCTGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATTACACAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CCA 90 bp TCACTGTGTAATTCAAGGCTAGCCTGGGTCTTGCAGTGTAGACCAGGCTGGCCTAAACTCACAGAGATCTaGTGCCTCTGCCTCACAATT +
Preference number: 2 (lower is better)
Translates to: SLCNSRLAWVLQCRPGWPKLTEI*CLCLTI
Trigger: AATTGTGAGGCAGAGGCACCAGATCTCTGTGAGTTT...AGGCCAGCCTGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATTACACAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATACTCACAGAGATCTGGTaGCTCTGCCTCACAATTGCT +
Preference number: 2 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTILTEIW*LCLTIA
Trigger: AGCAATTGTGAGGCAGAGGCACCAGATCTCTGTGAG...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGACCTTGTCATTCTCCTaGCTCCACCATGCAACTACT +
Preference number: 2 (lower is better)
Translates to: GCWPLVYLEEFSTLNFYVTLSFS*LHHATT
Trigger: AGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CCA 90 bp GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGAATTCAAGGCTAGCCTaGGTCTTGCAGTGTAGACCA +
Preference number: 2 (lower is better)
Translates to: GCWPLVYLEEFSTLNFYVNSRLA*VLQCRP
Trigger: TGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR TCA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATATACCCTACCCATGAATaGCACCTCCAGCTCAATTTC +
Preference number: 2 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTIYPTHE*HLQLNF
Trigger: GAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTA...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCTGGGCTTACAGGAATaGACCACCTTACCTGACTCT +
Preference number: 2 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTLGLQE*TTLPDS
Trigger: AGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAG...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCACCTTGTCATTCTCCTaGCTCCACCATGCAACTACT +
Preference number: 2 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTTLSFS*LHHATT
Trigger: AGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGT...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CCA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAAAACTCACAGAGATCTaGTGCCTCTGCCTCACAATT +
Preference number: 2 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTIKLTEI*CLCLTI
Trigger: AATTGTGAGGCAGAGGCACCAGATCTCTGTGAGTTT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CCA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCAATTCAAGGCTAGCCTaGGTCTTGCAGTGTAGACCA +
Preference number: 2 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTNSRLA*VLQCRP
Trigger: TGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATT...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR TCA 90 bp GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGATGCACCACCTTACCTaGCTCTTCAATTTCTACATT +
Preference number: 2 (lower is better)
Translates to: GCWPLVYLEEFSTLNFYVMHHLT*LFNFYI
Trigger: AATGTAGAAATTGAAGAGTCAGGTAAGGTGGTGCAT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR TCA 90 bp GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCATACCCTACCCATGAATaGCACCTCCAGCTCAATTTC +
Preference number: 2 (lower is better)
Translates to: VYLEEFSTLNFYVLRLSSYPTHE*HLQLNF
Trigger: GAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTA...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGAGATCTGGTGCCTCTaGCTCACAATTGCTGACATT +
Preference number: 2 (lower is better)
Translates to: VYLEEFSTLNFYVLRLSSEIWCL*LTIADI
Trigger: AATGTCAGCAATTGTGAGGCAGAGGCACCAGATCTC...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGACTCACAGAGATCTGGTaGCTCTGCCTCACAATTGCT +
Preference number: 2 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGLTEIW*LCLTIA
Trigger: AGCAATTGTGAGGCAGAGGCACCAGATCTCTGTGAG...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGACTGGGCTTACAGGAATaGACCACCTTACCTGACTCT +
Preference number: 2 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGLGLQE*TTLPDS
Trigger: AGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAG...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CCA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATATTTCTAGATTCTTCATaGCAGTCACTCTTTAGTGGG +
Preference number: 2 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTIFLDSS*QSLFSG
Trigger: CCCACTAAAGAGTGACTGCCATGAAGAATCTAGAAA...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR TCA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGATACCCTACCCATGAATaGCACCTCCAGCTCAATTTC +
Preference number: 2 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGYPTHE*HLQLNF
Trigger: GAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTA...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCTGGGTCATCAATGCTTaGTGTCAAGACAATACACAT +
Preference number: 2 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTWVINA*CQDNTH
Trigger: ATGTGTATTGTCTTGACAGCAAGCATTGATGACCCA...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CCA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCTTTCTAGATTCTTCATaGCAGTCACTCTTTAGTGGG +
Preference number: 2 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTFLDSS*QSLFSG
Trigger: CCCACTAAAGAGTGACTGCCATGAAGAATCTAGAAA...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CCA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGATGCCATTATAGCCTTTaGAGGCCAGGCAGACAAATG +
Preference number: 2 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGCHYSL*RPGRQM
Trigger: CATTTGTCTGCCTGGCCTCCAAAGGCTATAATGGCA...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR TCA 90 bp AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCATGCACCACCTTACCTaGCTCTTCAATTTCTACATT +
Preference number: 2 (lower is better)
Translates to: STLNFYVLRLSSDLLCSSMHHLT*LFNFYI
Trigger: AATGTAGAAATTGAAGAGTCAGGTAAGGTGGTGCAT...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp GTAACTAGTACCCTACCCATGAATGACACCTCCAGCTCAATTTCTAGATTCTTCTGGGTCATCAATGCTTaGTGTCAAGACAATACACAT +
Preference number: 2 (lower is better)
Translates to: VTSTLPMNDTSSSISRFFWVINA*CQDNTH
Trigger: ATGTGTATTGTCTTGACAGCAAGCATTGATGACCCA...GAAGAATCTAGAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTACTAGTTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CCA 90 bp GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCATTTCTAGATTCTTCATaGCAGTCACTCTTTAGTGGG +
Preference number: 2 (lower is better)
Translates to: VYLEEFSTLNFYVLRLSSFLDSS*QSLFSG
Trigger: CCCACTAAAGAGTGACTGCCATGAAGAATCTAGAAA...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR GCA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGATGGGTCATCAATGCTTaGTGTCAAGACAATACACAT +
Preference number: 2 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGWVINA*CQDNTH
Trigger: ATGTGTATTGTCTTGACAGCAAGCATTGATGACCCA...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CAA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCGCAAGGTGTTGGCTGTaGGCCCCTGGTGTACCTGGA +
Preference number: 3 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTARCWL*APGVPG
Trigger: TCCAGGTACACCAGGGGCCAACAGCCAACACCTTGC...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR GCA 72 bp AGTGACTTTGACCTTGTCATTCTCCTGCCTCCACCATaGAACTACTGGGCTTACAGGAATGCACCACCTTAC +
Preference number: 3 (lower is better)
Translates to: SDFDLVILLPPP*NYWAYRNAPPY
Trigger: GTAAGGTGGTGCATTCCTGTAAGCCCAGTAGTTGCATGGTGGAGGCAGGAGAATGACAAGGTCAAAGTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CAA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATACAAGTGACTTTGACCTaGTCATTCTCCTGCCTCCAC +
Preference number: 3 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTIQVTLT*SFSCLH
Trigger: GTGGAGGCAGGAGAATGACAAGGTCAAAGTCACTTG...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR TCA 72 bp GCAACTACTGGGCTTACAGGAATGCACCACCTTACCTaGCTCTTCAATTTCTACATTCTTGATGGGGGTGGG +
Preference number: 3 (lower is better)
Translates to: ATTGLTGMHHLT*LFNFYILDGGG
Trigger: CCCACCCCCATCAAGAATGTAGAAATTGAAGAGTCAGGTAAGGTGGTGCATTCCTGTAAGCCCAGTAGTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR TCA 72 bp CTTTGGAGGCCAGGCAGACAAATGACTGAGCTTGTCTaGGTGACTATACTATGTAAGCTGGCAAGGTGTTGG +
Preference number: 3 (lower is better)
Translates to: LWRPGRQMTELV*VTILCKLARCW
Trigger: CCAACACCTTGCCAGCTTACATAGTATAGTCACTCAGACAAGCTCAGTCATTTGTCTGCCTGGCCTCCAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CAA 90 bp AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCGTGGGTCATCAATGCTaGCTGTCAAGACAATACACA +
Preference number: 3 (lower is better)
Translates to: STLNFYVLRLSSDLLCSSVGHQC*LSRQYT
Trigger: TGTGTATTGTCTTGACAGCAAGCATTGATGACCCAC...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CAA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCTTTTTCTGGACATTCTaGGAATTAAACCAAGGGCCT +
Preference number: 3 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTFFWTF*ELNQGP
Trigger: AGGCCCTTGGTTTAATTCCAAGAATGTCCAGAAAAA...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR TCA 72 bp CAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTaGCCTTCACAGGAGTGCCACAGTGTGTACATACAA +
Preference number: 3 (lower is better)
Translates to: QMERTKTLKVVL*PSQECHSVYIQ
Trigger: TTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CAA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGGGTCATCAATGCTaGCTGTCAAGACAATACACA +
Preference number: 3 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGVGHQC*LSRQYT
Trigger: TGTGTATTGTCTTGACAGCAAGCATTGATGACCCAC...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR GCA 72 bp ATTCTTCATGGCAGTCACTCTTTAGTGGGTCATCAATaGTTGCTGTCAAGACAATACACATACAAGGAGTCA +
Preference number: 3 (lower is better)
Translates to: ILHGSHSLVGHQ*LLSRQYTYKES
Trigger: TGACTCCTTGTATGTGTATTGTCTTGACAGCAAGCATTGATGACCCACTAAAGAGTGACTGCCATGAAGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR-3UTR CAA 90 bp GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCATTTTTCTGGACATTCTaGGAATTAAACCAAGGGCCT +
Preference number: 3 (lower is better)
Translates to: VYLEEFSTLNFYVLRLSSFFWTF*ELNQGP
Trigger: AGGCCCTTGGTTTAATTCCAAGAATGTCCAGAAAAA...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATACTTCAACGTGGTTGCTaGTGTTTTGGCTCGTGTGTC +
Preference number: 4 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTILQRGC*CFGSCV
Trigger: GACACACGAGCCAAAACACCAGCAACCACGTTGAAG...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGAAGACTTCAAACTCGTaGGGCTCAATTCTTCTCCTC +
Preference number: 4 (lower is better)
Translates to: GCWPLVYLEEFSTLNFYVKTSNS*GSILLL
Trigger: GAGGAGAAGAATTGAGCCCCACGAGTTTGAAGTCTT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR GCA 90 bp TCACTGTGTAATTCAAGGCTAGCCTGGGTCTTGCAGTGTAGACCAGGCTGGCCTGTGGTGATAAAGCCGTaGTATGTAAATAAACAGAGT +
Preference number: 4 (lower is better)
Translates to: SLCNSRLAWVLQCRPGWPVVIKP*YVNKQS
Trigger: ACTCTGTTTATTTACATAGCACGGCTTTATCACCAC...AGGCCAGCCTGGTCTACACTGCAAGACCCAGGCTAGCCTTGAATTACACAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCTTCTTCTCCTCAGAGTaGGATCAACAGCTACAGGGC +
Preference number: 4 (lower is better)
Translates to: STLNFYVLRLSSDLLCSSFFSSE*DQQLQG
Trigger: GCCCTGTAGCTGTTGATCCCACTCTGAGGAGAAGAA...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAAAGTTGACTTCAACGTaGTTGCTGGTGTTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTIKLTST*LLVFWL
Trigger: GAGCCAAAACACCAGCAACCACGTTGAAGTCAACTT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp CTTCAGACTTACTGTGTAGCTCCAAGTGACTTTGACCTTGTCATTCTCCTGCCTCCAAAGGAGATGGGGTaGTATCCTTTGGTAATGGCA +
Preference number: 4 (lower is better)
Translates to: LQTYCVAPSDFDLVILLPPKEMG*YPLVMA
Trigger: TGCCATTACCAAAGGATACCACCCCATCTCCTTTGG...AGGCAGGAGAATGACAAGGTCAAAGTCACTTGGAGCTACACAGTAAGTCTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCAAAGGAGATGGGGTaGTATCCTTTGGTAATGGCA +
Preference number: 4 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTPKEMG*YPLVMA
Trigger: TGCCATTACCAAAGGATACCACCCCATCTCCTTTGG...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR TCA 90 bp GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGATTTTTCTAAGAAGTTaGCTTCAACGTGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: GCWPLVYLEEFSTLNFYVIFLRS*LQRGCW
Trigger: CCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAAT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR TCA 90 bp CTTCAGACTTACTGTGTAGCTCCAAGTGACTTTGACCTTGTCATTCTCCTGCCTGTGGAAGTCCTAAAATaGTGCAGTAGAGCTCCAGTA +
Preference number: 4 (lower is better)
Translates to: LQTYCVAPSDFDLVILLPVEVLK*CSRAPV
Trigger: TACTGGAGCTCTACTGCATCATTTTAGGACTTCCAC...AGGCAGGAGAATGACAAGGTCAAAGTCACTTGGAGCTACACAGTAAGTCTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp TGTCAAGACAATACACATACAAGGAGTCATTTCATCCATGCCCAACTCCCAGAACTTCAACGTGGTTGCTaGTGTTTTGGCTCGTGTGTC +
Preference number: 4 (lower is better)
Translates to: CQDNTHTRSHFIHAQLPELQRGC*CFGSCV
Trigger: GACACACGAGCCAAAACACCAGCAACCACGTTGAAG...TTCTGGGAGTTGGGCATGGATGAAATGACTCCTTGTATGTGTATTGTCTTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCAAGTTGACTTCAACGTaGTTGCTGGTGTTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTKLTST*LLVFWL
Trigger: GAGCCAAAACACCAGCAACCACGTTGAAGTCAACTT...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGATTCTTCTCCTCAGAGTaGGATCAACAGCTACAGGGC +
Preference number: 4 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGFFSSE*DQQLQG
Trigger: GCCCTGTAGCTGTTGATCCCACTCTGAGGAGAAGAA...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCAAGACTTCAAACTCGTaGGGCTCAATTCTTCTCCTC +
Preference number: 4 (lower is better)
Translates to: STLNFYVLRLSSDLLCSSKTSNS*GSILLL
Trigger: GAGGAGAAGAATTGAGCCCCACGAGTTTGAAGTCTT...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGACTTCAACGTGGTTGCTaGTGTTTTGGCTCGTGTGTC +
Preference number: 4 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGLQRGC*CFGSCV
Trigger: GACACACGAGCCAAAACACCAGCAACCACGTTGAAG...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCAAGTTGACTTCAACGTaGTTGCTGGTGTTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: STLNFYVLRLSSDLLCSSKLTST*LLVFWL
Trigger: GAGCCAAAACACCAGCAACCACGTTGAAGTCAACTT...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCACCAAAGGAGATGGGGTaGTATCCTTTGGTAATGGCA +
Preference number: 4 (lower is better)
Translates to: VYLEEFSTLNFYVLRLSSPKEMG*YPLVMA
Trigger: TGCCATTACCAAAGGATACCACCCCATCTCCTTTGG...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR TCA 90 bp CTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGCCACAGTGTGTACATACAACCATTTTTCTAAGAAGTTaGCTTCAACGTGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: LKSCPLTFTGVPQCVHTTIFLRS*LQRGCW
Trigger: CCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAAT...GGTTGTATGTACACACTGTGGCACTCCTGTGAAGGTCAGAGGACAACTTTTAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR CAA 72 bp TACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTaGAGGCTGTCTTCAGACTTACTGTGTAGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: YLEEFSTLNFYV*RLSSDLLCSSK
Trigger: CTTGGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR TCA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGAGTGGAAGTCCTAAAATaGTGCAGTAGAGCTCCAGTA +
Preference number: 4 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGVEVLK*CSRAPV
Trigger: TACTGGAGCTCTACTGCATCATTTTAGGACTTCCAC...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CCA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGAAAGACTTCAAACTCGTaGGGCTCAATTCTTCTCCTC +
Preference number: 4 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGKTSNS*GSILLL
Trigger: GAGGAGAAGAATTGAGCCCCACGAGTTTGAAGTCTT...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
3UTR CAA 72 bp CTTCATGGCAGTCACTCTTTAGTGGGTCATCAATGCTaGCTGTCAAGACAATACACATACAAGGAGTCATTT +
Preference number: 4 (lower is better)
Translates to: LHGSHSLVGHQC*LSRQYTYKESF
Trigger: AAATGACTCCTTGTATGTGTATTGTCTTGACAGCAAGCATTGATGACCCACTAAAGAGTGACTGCCATGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR GCA 90 bp AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCGTGGTGATAAAGCCGTaGTATGTAAATAAACAGAGT +
Preference number: 4 (lower is better)
Translates to: STLNFYVLRLSSDLLCSSVVIKP*YVNKQS
Trigger: ACTCTGTTTATTTACATAGCACGGCTTTATCACCAC...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS CCA 90 bp GTCTCTTTCCGAAGCTCCCGGGGGTCAAAGAAGACTTCAAACTCGTaGGGCTCAATTCTTCTCCTCAGAGTGGGATCAACAGCTACAGGG +
Preference number: 5 (lower is better)
Translates to: VSFRSSRGSKKTSNS*GSILLLRVGSTATG
Trigger: CCCTGTAGCTGTTGATCCCACTCTGAGGAGAAGAATTGAGCCCCACGAGTTTGAAGTCTTCTTTGACCCCCGGGAGCTTCGGAAAGAGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
ENSMUST00000203204.3
ENSMUST00000203309.3
CDS-3UTR CAA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGT +
Preference number: 5 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTIKVPES*AVSLIR
Trigger: ACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp GTAACTAGTACCCTACCCATGAATGACACCTCCAGCTCAATTTCTAGATTCTTCAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGT +
Preference number: 5 (lower is better)
Translates to: VTSTLPMNDTSSSISRFFKVPES*AVSLIR
Trigger: ACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTT...GAAGAATCTAGAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTACTAGTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp GTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGT +
Preference number: 5 (lower is better)
Translates to: VYLEEFSTLNFYVLRLSSKVPES*AVSLIR
Trigger: ACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTT...TGAAGACAGCCTCAACACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAACAGATGGGGGTACCTaGGCCAATAAGCTTCGTTTG +
Preference number: 5 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTITDGGT*ANKLRL
Trigger: CAAACGAAGCTTATTGGCCAAGGTACCCCCATCTGT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp AGCACACTGAATTTCTATGTGTTGAGGCTGTCTTCAGACTTACTGTGTAGCTCCTGCCTTCCACCCCAGTaGATCTCATACAGCAGACAG +
Preference number: 5 (lower is better)
Translates to: STLNFYVLRLSSDLLCSSCLPPQ*ISYSRQ
Trigger: CTGTCTGCTGTATGAGATCAACTGGGGTGGAAGGCA...GGAGCTACACAGTAAGTCTGAAGACAGCCTCAACACATAGAAATTCAGTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp CTTCAGACTTACTGTGTAGCTCCAAGTGACTTTGACCTTGTCATTCTCCTGCCTACAGATGGGGGTACCTaGGCCAATAAGCTTCGTTTG +
Preference number: 5 (lower is better)
Translates to: LQTYCVAPSDFDLVILLPTDGGT*ANKLRL
Trigger: CAAACGAAGCTTATTGGCCAAGGTACCCCCATCTGT...AGGCAGGAGAATGACAAGGTCAAAGTCACTTGGAGCTACACAGTAAGTCTGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAATGGGGTGGTATCCTTaGGTAATGGCAGGTTTGAAG +
Preference number: 5 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTIMGWYP*VMAGLK
Trigger: CTTCAAACCTGCCATTACCAAAGGATACCACCCCAT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp TGTCAAGACAATACACATACAAGGAGTCATTTCATCCATGCCCAACTCCCAGAATGCCTTCCACCCCAGTaGATCTCATACAGCAGACAG +
Preference number: 5 (lower is better)
Translates to: CQDNTHTRSHFIHAQLPECLPPQ*ISYSRQ
Trigger: CTGTCTGCTGTATGAGATCAACTGGGGTGGAAGGCA...TTCTGGGAGTTGGGCATGGATGAAATGACTCCTTGTATGTGTATTGTCTTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp GGCTGTTGGCCCCTGGTGTACCTGGAGGAATTTAGCACACTGAATTTCTATGTGAATTTTTCTAAGAAGTaGACTTCAACGTGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: GCWPLVYLEEFSTLNFYVNFSKK*TSTWLL
Trigger: CAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATT...CACATAGAAATTCAGTGTGCTAAATTCCTCCAGGTACACCAGGGGCCAACAGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp ACCTTCACAGGAGTGCCACAGTGTGTACATACAACCCCCTCAACAGACACAATAAATTTTTCTAAGAAGTaGACTTCAACGTGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: TFTGVPQCVHTTPSTDTINFSKK*TSTWLL
Trigger: CAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATT...TATTGTGTCTGTTGAGGGGGTTGTATGTACACACTGTGGCACTCCTGTGAAGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS-3UTR CAA 90 bp CTAACAGATGGAGAGAACAAAAACCTTAAAAGTTGTCCTCTGACCTTCACAGGAATGGGGTGGTATCCTTaGGTAATGGCAGGTTTGAAG +
Preference number: 5 (lower is better)
Translates to: LTDGENKNLKSCPLTFTGMGWYP*VMAGLK
Trigger: CTTCAAACCTGCCATTACCAAAGGATACCACCCCAT...TCCTGTGAAGGTCAGAGGACAACTTTTAAGGTTTTTGTTCTCTCCATCTGTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS CCA 90 bp AAGTATCTTTCTGTAGTAAATTTTTCTAAGAAGTTGACTTCAACGTaGTTGCTGGTGTTTTGGCTCGTGTGTCGCCAGACACTGTGCCTT +
Preference number: 5 (lower is better)
Translates to: KYLSVVNFSKKLTST*LLVFWLVCRQTLCL
Trigger: AAGGCACAGTGTCTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATTTACTACAGAAAGATACTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
ENSMUST00000203204.3
ENSMUST00000203309.3
CDS-3UTR CAA 90 bp GTAACTAGTACCCTACCCATGAATGACACCTCCAGCTCAATTTCTAGATTCTTCAATTTTTCTAAGAAGTaGACTTCAACGTGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: VTSTLPMNDTSSSISRFFNFSKK*TSTWLL
Trigger: CAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATT...GAAGAATCTAGAAATTGAGCTGGAGGTGTCATTCATGGGTAGGGTACTAGTTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS TCA 72 bp TCGTGTGTCGCCAGACACTGTGCCTTCCACCCCAGTTaGTCTCATACAGCAGACAGGTCTCTTTCCGAAGCT +
Preference number: 6 (lower is better)
Translates to: SCVARHCAFHPS*SHTADRSLSEA
Trigger: AGCTTCGGAAAGAGACCTGTCTGCTGTATGAGATCAACTGGGGTGGAAGGCACAGTGTCTGGCGACACACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
ENSMUST00000203204.3
ENSMUST00000203309.3
CDS CAA 72 bp GATAGTCACACCGCTGCTAATAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGTGTGGTGATAAAGCCG +
Preference number: 6 (lower is better)
Translates to: DSHTAANKVPES*AVSLIRVVIKP
Trigger: CGGCTTTATCACCACACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTTATTAGCAGCGGTGTGACTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS CCA 72 bp TCTAAGAAGTTGACTTCAACGTGGTTGCTGGTGTTTTaGCTCGTGTGTCGCCAGACACTGTGCCTTCCACCC +
Preference number: 6 (lower is better)
Translates to: SKKLTSTWLLVF*LVCRQTLCLPP
Trigger: GGGTGGAAGGCACAGTGTCTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
ENSMUST00000203204.3
ENSMUST00000203309.3
CDS CAA 90 bp CATGATCTGGATAGTCACACCGCTGCTAATAAGGTCCCTGAGTCCTaGGCGGTTTCGCTGATCCGTGTGGTGATAAAGCCGTGCTATGTA +
Preference number: 6 (lower is better)
Translates to: HDLDSHTAANKVPES*AVSLIRVVIKPCYV
Trigger: TACATAGCACGGCTTTATCACCACACGGATCAGCGAAACCGCCAAGGACTCAGGGACCTTATTAGCAGCGGTGTGACTATCCAGATCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS GCA 72 bp TTGGCGGTTTCGCTGATCCGTGTGGTGATAAAGCCGTaGTATGTAAATAAACAGAGTTACATAGGGGTGTCG +
Preference number: 6 (lower is better)
Translates to: LAVSLIRVVIKP*YVNKQSYIGVS
Trigger: CGACACCCCTATGTAACTCTGTTTATTTACATAGCACGGCTTTATCACCACACGGATCAGCGAAACCGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS CAA 72 bp GTAGTAAATTTTTCTAAGAAGTTGACTTCAACGTGGTaGCTGGTGTTTTGGCTCGTGTGTCGCCAGACACTG +
Preference number: 6 (lower is better)
Translates to: VVNFSKKLTSTW*LVFWLVCRQTL
Trigger: CAGTGTCTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATTTACTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
ENSMUST00000203204.3
ENSMUST00000203309.3
CDS CAA 72 bp CAACCCTGTAGCCCAAAGGAGATGGGGTGGTATCCTTaGGTAATGGCAGGTTTGAAGAGTAATTGTGAAAAA +
Preference number: 6 (lower is better)
Translates to: QPCSPKEMGWYP*VMAGLKSNCEK
Trigger: TTTTTCACAATTACTCTTCAAACCTGCCATTACCAAAGGATACCACCCCATCTCCTTTGGGCTACAGGGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS CAA 90 bp TATCTTTCTGTAGTAAATTTTTCTAAGAAGTTGACTTCAACGTGGTaGCTGGTGTTTTGGCTCGTGTGTCGCCAGACACTGTGCCTTCCA +
Preference number: 6 (lower is better)
Translates to: YLSVVNFSKKLTSTW*LVFWLVCRQTLCLP
Trigger: TGGAAGGCACAGTGTCTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATTTACTACAGAAAGATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
ENSMUST00000203204.3
ENSMUST00000203309.3
CDS CAA 90 bp GTGTTCGGACGAAAGTATCTTTCTGTAGTAAATTTTTCTAAGAAGTaGACTTCAACGTGGTTGCTGGTGTTTTGGCTCGTGTGTCGCCAG +
Preference number: 6 (lower is better)
Translates to: VFGRKYLSVVNFSKK*TSTWLLVFWLVCRQ
Trigger: CTGGCGACACACGAGCCAAAACACCAGCAACCACGTTGAAGTCAACTTCTTAGAAAAATTTACTACAGAAAGATACTTTCGTCCGAACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
ENSMUST00000203204.3
ENSMUST00000203309.3
CDS CAA 90 bp TGTAGCCCAAAGGAGATGGGGTGGTATCCTTTGGTAATGGCAGGTTaGAAGAGTAATTGTGAAAAACGTGAGTTGAGGTTGCTTTCTTCT +
Preference number: 6 (lower is better)
Translates to: CSPKEMGWYPLVMAG*KSNCEKRELRLLSS
Trigger: AGAAGAAAGCAACCTCAACTCACGTTTTTCACAATTACTCTTCAAACCTGCCATTACCAAAGGATACCACCCCATCTCCTTTGGGCTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11
CDS CAA 72 bp AAGGAGATGGGGTGGTATCCTTTGGTAATGGCAGGTTaGAAGAGTAATTGTGAAAAACGTGAGTTGAGGTTG +
Preference number: 6 (lower is better)
Translates to: KEMGWYPLVMAG*KSNCEKRELRL
Trigger: CAACCTCAACTCACGTTTTTCACAATTACTCTTCAAACCTGCCATTACCAAAGGATACCACCCCATCTCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112585.8
ENSMUST00000112586.8
ENSMUST00000112587.11