RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APOA4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032080

Ensembl transcript IDs: ENSMUST00000034585.7

Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGGCAGGACAGGTGTCTaGTGCTGTGATGGGCTGAGG +
Preference number: 2 (lower is better)
Translates to: HRTCVLKLVQEVPGDRVTGRTGV*CCDGLR
Trigger: CCTCAGCCCATCACAGCAGCAGACACCTGTCCTGCC...TGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
3UTR-3UTR CCA 90 bp CTTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGAAGAGTGACAGACAGGTaGTGGGGCAGGACAGGTGTC +
Preference number: 2 (lower is better)
Translates to: LHLPQDMCPQAGTRSAWGRVTDR*WGRTGV
Trigger: GACACCTGTCCTGCCCCACCACCTGTCTGTCACTCT...TCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
3UTR-3UTR GCA 90 bp ATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACAGGTGAGGACAGGTGTCTGCTaGTGTGATGGGCTGAGGGCA +
Preference number: 2 (lower is better)
Translates to: MCPQAGTRSAWGQSDRQVRTGVC*CDGLRA
Trigger: TGCCCTCAGCCCATCACAGCAGCAGACACCTGTCCT...CACCTGTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
3UTR-3UTR TCA 90 bp TCAGTTGCTTTATTGAGTAGCGAGATGTGGCTTCACCTCCCACAGGACATGTGTAGGTGTCTGCTGCTGTaGTGGGCTGAGGGCACCAGG +
Preference number: 2 (lower is better)
Translates to: SVALLSSEMWLHLPQDMCRCLLL*WAEGTR
Trigger: CCTGGTGCCCTCAGCCCATCACAGCAGCAGACACCT...ACACATGTCCTGTGGGAGGTGAAGCCACATCTCGCTACTCAATAAAGCAACTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
3UTR CCA 72 bp GCTAATTTCTCAGTTGCTTTATTGAGTAGCGAGATGTaGCTTCACCTCCCACAGGACATGTGTCCTCAAGCT +
Preference number: 3 (lower is better)
Translates to: ANFSVALLSSEM*LHLPQDMCPQA
Trigger: AGCTTGAGGACACATGTCCTGTGGGAGGTGAAGCCACATCTCGCTACTCAATAAAGCAACTGAGAAATTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR TCA 90 bp AGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACCAGCCCGGGTGCCGGTaGTGGCCACCAGGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: RTCVLKLVQEVPGDRVTDQPGCR*WPPGPG
Trigger: CCCTGGCCCTGGTGGCCATCACCGGCACCCGGGCTG...GTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR TCA 90 bp CCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACGGGAGGGGGAGGGCTTaGGGCTGGTCTGGGCTCCCC +
Preference number: 4 (lower is better)
Translates to: PQDMCPQAGTRSAWGQSDGRGRA*GWSGLP
Trigger: GGGGAGCCCAGACCAGCCTCAAGCCCTCCCCCTCCC...GTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp GGCTTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGTCAGAGGGGCCAGGCTaGGGCGCAGATCCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: GFTSHRTCVLKLVQEVPGSEGPG*GADPPG
Trigger: ACCTGGAGGATCTGCGCCGCAGCCTGGCCCCTCTGA...CCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp GGCTTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGCCATGGGCTCCACAGTaGGTCGGAACTCCTCCACCT +
Preference number: 4 (lower is better)
Translates to: GFTSHRTCVLKLVQEVPGPWAPQ*VGTPPP
Trigger: AGGTGGAGGAGTTCCGACGCACTGTGGAGCCCATGG...CCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp TTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACGCAGCCCTTCCGTGTTaGCCTTCACCTTGCTCTGCA +
Preference number: 4 (lower is better)
Translates to: FTSHRTCVLKLVQEVPGDAALPC*PSPCSA
Trigger: TGCAGAGCAAGGTGAAGGGCAACACGGAAGGGCTGC...GTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp CCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACACCACATTGGCCACCTaGTCCGAAGTGACCTCAGCC +
Preference number: 4 (lower is better)
Translates to: PQDMCPQAGTRSAWGQSDTTLAT*SEVTSA
Trigger: GGCTGAGGTCACTTCGGACCAGGTGGCCAATGTGGT...GTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp TCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGGTTCTGGTCGATCGTaGCCTTCAGCTCGTTGGCAC +
Preference number: 4 (lower is better)
Translates to: SPPTGHVSSSWYKKCLGTGSGRS*PSARWH
Trigger: GTGCCAACGAGCTGAAGGCCACGATCGACCAGAACC...TGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp TTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACTCTTCCAGAGACTTCTaGAGCCCTTCCGTGTTGCCC +
Preference number: 4 (lower is better)
Translates to: FTSHRTCVLKLVQEVPGDSSRDF*SPSVLP
Trigger: GGGCAACACGGAAGGGCTGCAGAAGTCTCTGGAAGA...GTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp GACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACAGAGCTCTCCAGAGGTTTaGGCTGCACCTGCTCCTGAG +
Preference number: 4 (lower is better)
Translates to: DMCPQAGTRSAWGQSDRQSSPEV*AAPAPE
Trigger: CTCAGGAGCAGGTGCAGCCCAAACCTCTGGAGAGCT...CTGTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR TCA 90 bp CCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACCCTGGGTCTGTGTGTTaGTCTGATCTTGCAGGTCCA +
Preference number: 4 (lower is better)
Translates to: PQDMCPQAGTRSAWGQSDPGSVC*SDLAGP
Trigger: TGGACCTGCAAGATCAGATCAACACACAGACCCAGG...GTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR TCA 90 bp CTTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGAGGGTTAGGTGCCCCTTaGGCTCTTCCATATTCCTGT +
Preference number: 4 (lower is better)
Translates to: LHLPQDMCPQAGTRSAWGGLGAP*ALPYSC
Trigger: ACAGGAATATGGAAGAGCTCAAGGGGCACCTAACCC...TCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR TCA 90 bp GACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACAGCCTCCATCTGATGGTTaGGTTTCTCCTGCACGCCCA +
Preference number: 4 (lower is better)
Translates to: DMCPQAGTRSAWGQSDRQPPSDG*VSPARP
Trigger: TGGGCGTGCAGGAGAAACTCAACCATCAGATGGAGG...CTGTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp CTTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGAGGCTTCAGGTGCTCCTaGAACTTCTGCATGTTCTCC +
Preference number: 4 (lower is better)
Translates to: LHLPQDMCPQAGTRSAWGGFRCS*NFCMFS
Trigger: GGAGAACATGCAGAAGTTGCAGGAGCACCTGAAGCC...TCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp AGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACACCTGCTGCTCCAGCTaGCTGTTCAGGTCTTCCAGA +
Preference number: 4 (lower is better)
Translates to: RTCVLKLVQEVPGDRVTDTCCSS*LFRSSR
Trigger: TCTGGAAGACCTGAACAGGCAGCTGGAGCAGCAGGT...GTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp AGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACACCCTCTCAGTTTCCTaGGCTAGATGCCCACTCAGC +
Preference number: 4 (lower is better)
Translates to: RTCVLKLVQEVPGDRVTDTLSVS*ARCPLS
Trigger: GCTGAGTGGGCATCTAGCCCAGGAAACTGAGAGGGT...GTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp AGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACGCGTTCTTCTTCATCTaGAAGGCCAGGCCCTCCATC +
Preference number: 4 (lower is better)
Translates to: RTCVLKLVQEVPGDRVTDAFFFI*KARPSI
Trigger: GATGGAGGGCCTGGCCTTCCAGATGAAGAAGAACGC...GTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp AGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACTCCAGGAAGCTCAAGTaGCTTTCCACCTCCCCCGAA +
Preference number: 4 (lower is better)
Translates to: RTCVLKLVQEVPGDRVTDSRKLK*LSTSPE
Trigger: TTCGGGGGAGGTGGAAAGCCACTTGAGCTTCCTGGA...GTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp CACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACACAGCTGGTCGATTTTTaGGGAGACCTTGGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: HRTCVLKLVQEVPGDRVTQLVDF*GDLGLE
Trigger: CTCCAGACCAAGGTCTCCGCAAAAATCGACCAGCTG...TGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp TCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAAACTGTTCCAGCTGCTaGACCAGAGCCTTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: SPPTGHVSSSWYKKCLGTNCSSC*TRALLN
Trigger: GTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTT...TGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp CACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGAATTGGGACCCAGCTaGTGTCTGAACTGTTCCAGC +
Preference number: 4 (lower is better)
Translates to: HRTCVLKLVQEVPGDRVTELGPS*CLNCSS
Trigger: GCTGGAACAGTTCAGACAGCAGCTGGGTCCCAATTC...TGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp CACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACATCCCCAAGTTTGTCCTaGAAGAGGGTACTGAGCTGC +
Preference number: 4 (lower is better)
Translates to: HRTCVLKLVQEVPGDRVTSPSLS*KRVLSC
Trigger: GCAGCTCAGTACCCTCTTCCAGGACAAACTTGGGGA...TGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp TCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAATGTATGGGGTCAGCTaGAGCTTCATTTCCTGGGTC +
Preference number: 4 (lower is better)
Translates to: SPPTGHVSSSWYKKCLGTMYGVS*SFISWV
Trigger: GACCCAGGAAATGAAGCTCCAGCTGACCCCATACAT...TGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp TTCTCAGTTGCTTTATTGAGTAGCGAGATGTGGCTTCACCTCCCACAGGACATGGCGGAGACCTTGGTCTaGAGCTCCTCCGCGTTCTTC +
Preference number: 4 (lower is better)
Translates to: FSVALLSSEMWLHLPQDMAETLV*SSSAFF
Trigger: GAAGAACGCGGAGGAGCTCCAGACCAAGGTCTCCGC...CATGTCCTGTGGGAGGTGAAGCCACATCTCGCTACTCAATAAAGCAACTGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR TCA 90 bp AGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACGTGACATCCGTCTTCTaGAACTGTTCTACAGCCTCC +
Preference number: 4 (lower is better)
Translates to: RTCVLKLVQEVPGDRVTDVTSVF*NCSTAS
Trigger: GGAGGCTGTAGAACAGTTTCAGAAGACGGATGTCAC...GTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp ATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACAGGTGGTTCTACAGCCTCCTTaGCATTGTTGCTTAGCTGGG +
Preference number: 4 (lower is better)
Translates to: MCPQAGTRSAWGQSDRQVVLQPP*HCCLAG
Trigger: CCCAGCTAAGCAACAATGCCAAGGAGGCTGTAGAAC...CACCTGTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp AGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACTGTCCTTTAAGTTGGTaGCAAGGGGCATCATCGAGG +
Preference number: 4 (lower is better)
Translates to: RTCVLKLVQEVPGDRVTDCPLSW*QGASSR
Trigger: CCTCGATGATGCCCCTTGCCACCAACTTAAAGGACA...GTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CCA 90 bp CACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAACTTGTCCTTTAAGTTaGTGGCAAGGGGCATCATCG +
Preference number: 4 (lower is better)
Translates to: HRTCVLKLVQEVPGDRVTTCPLS*WQGASS
Trigger: CGATGATGCCCCTTGCCACCAACTTAAAGGACAAGT...TGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR TCA 90 bp TTCTCAGTTGCTTTATTGAGTAGCGAGATGTGGCTTCACCTCCCACAGGACATGCCTCCAGCTCCTTCTTaGTCTCTTCCTTCACCCTCT +
Preference number: 4 (lower is better)
Translates to: FSVALLSSEMWLHLPQDMPPAPS*SLPSPS
Trigger: AGAGGGTGAAGGAAGAGATCAAGAAGGAGCTGGAGG...CATGTCCTGTGGGAGGTGAAGCCACATCTCGCTACTCAATAAAGCAACTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR GCA 90 bp TTCTCAGTTGCTTTATTGAGTAGCGAGATGTGGCTTCACCTCCCACAGGACATGTGCTCCTGCAACTTCTaGATGTTCTCCCCGAACGTC +
Preference number: 4 (lower is better)
Translates to: FSVALLSSEMWLHLPQDMCSCNF*MFSPNV
Trigger: GACGTTCGGGGAGAACATGCAGAAGTTGCAGGAGCA...CATGTCCTGTGGGAGGTGAAGCCACATCTCGCTACTCAATAAAGCAACTGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS TCA 90 bp CCGCGTTCTTCTTCATCTGGAAGGCCAGGCCCTCCATCTGATGGTTaGGTTTCTCCTGCACGCCCACCGTCAGAGGGGCCAGGCTGCGGC +
Preference number: 5 (lower is better)
Translates to: PRSSSSGRPGPPSDG*VSPARPPSEGPGCG
Trigger: GCCGCAGCCTGGCCCCTCTGACGGTGGGCGTGCAGGAGAAACTCAACCATCAGATGGAGGGCCTGGCCTTCCAGATGAAGAAGAACGCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS TCA 90 bp AGCTCCTCCGCGTTCTTCTTCATCTGGAAGGCCAGGCCCTCCATCTaGTGGTTGAGTTTCTCCTGCACGCCCACCGTCAGAGGGGCCAGG +
Preference number: 5 (lower is better)
Translates to: SSSAFFFIWKARPSI*WLSFSCTPTVRGAR
Trigger: CCTGGCCCCTCTGACGGTGGGCGTGCAGGAGAAACTCAACCATCAGATGGAGGGCCTGGCCTTCCAGATGAAGAAGAACGCGGAGGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 90 bp TCCAGAGACTTCTGCAGCCCTTCCGTGTTGCCCTTCACCTTGCTCTaGACGTCTTCCACCAGCGGGGCCAGATTCTTCTGCAGCTGGTCG +
Preference number: 5 (lower is better)
Translates to: SRDFCSPSVLPFTLL*TSSTSGARFFCSWS
Trigger: CGACCAGCTGCAGAAGAATCTGGCCCCGCTGGTGGAAGACGTGCAGAGCAAGGTGAAGGGCAACACGGAAGGGCTGCAGAAGTCTCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 90 bp GCTGCCTGTTCAGGTCTTCCAGAGACTTCTGCAGCCCTTCCGTGTTaGCCTTCACCTTGCTCTGCACGTCTTCCACCAGCGGGGCCAGAT +
Preference number: 5 (lower is better)
Translates to: AACSGLPETSAALPC*PSPCSARLPPAGPD
Trigger: ATCTGGCCCCGCTGGTGGAAGACGTGCAGAGCAAGGTGAAGGGCAACACGGAAGGGCTGCAGAAGTCTCTGGAAGACCTGAACAGGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 90 bp ATGGGCTCCACAGTGCGTCGGAACTCCTCCACCTGCTGCTCCAGCTaGCTGTTCAGGTCTTCCAGAGACTTCTGCAGCCCTTCCGTGTTG +
Preference number: 5 (lower is better)
Translates to: MGSTVRRNSSTCCSS*LFRSSRDFCSPSVL
Trigger: CAACACGGAAGGGCTGCAGAAGTCTCTGGAAGACCTGAACAGGCAGCTGGAGCAGCAGGTGGAGGAGTTCCGACGCACTGTGGAGCCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 90 bp GGTCTTCCAGAGACTTCTGCAGCCCTTCCGTGTTGCCCTTCACCTTaGTCTGCACGTCTTCCACCAGCGGGGCCAGATTCTTCTGCAGCT +
Preference number: 5 (lower is better)
Translates to: GLPETSAALPCCPSP*SARLPPAGPDSSAA
Trigger: AGCTGCAGAAGAATCTGGCCCCGCTGGTGGAAGACGTGCAGAGCAAGGTGAAGGGCAACACGGAAGGGCTGCAGAAGTCTCTGGAAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 90 bp AACATCTCTCCCATGGGCTCCACAGTGCGTCGGAACTCCTCCACCTaGTGCTCCAGCTGCCTGTTCAGGTCTTCCAGAGACTTCTGCAGC +
Preference number: 5 (lower is better)
Translates to: NISPMGSTVRRNSST*CSSCLFRSSRDFCS
Trigger: GCTGCAGAAGTCTCTGGAAGACCTGAACAGGCAGCTGGAGCAGCAGGTGGAGGAGTTCCGACGCACTGTGGAGCCCATGGGAGAGATGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CCA 90 bp GCGGGGCCAGATTCTTCTGCAGCTGGTCGATTTTTGCGGAGACCTTaGTCTGGAGCTCCTCCGCGTTCTTCTTCATCTGGAAGGCCAGGC +
Preference number: 5 (lower is better)
Translates to: AGPDSSAAGRFLRRP*SGAPPRSSSSGRPG
Trigger: GCCTGGCCTTCCAGATGAAGAAGAACGCGGAGGAGCTCCAGACCAAGGTCTCCGCAAAAATCGACCAGCTGCAGAAGAATCTGGCCCCGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 90 bp TCCCCCGAATTGGGACCCAGCTGCTGTCTGAACTGTTCCAGCTGCTaGACCAGAGCCTTGTTGAACATCTCTCCCATGGGCTCCACAGTG +
Preference number: 5 (lower is better)
Translates to: SPELGPSCCLNCSSC*TRALLNISPMGSTV
Trigger: CACTGTGGAGCCCATGGGAGAGATGTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTTCAGACAGCAGCTGGGTCCCAATTCGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CCA 90 bp GCCAGATTCTTCTGCAGCTGGTCGATTTTTGCGGAGACCTTGGTCTaGAGCTCCTCCGCGTTCTTCTTCATCTGGAAGGCCAGGCCCTCC +
Preference number: 5 (lower is better)
Translates to: ARFFCSWSIFAETLV*SSSAFFFIWKARPS
Trigger: GGAGGGCCTGGCCTTCCAGATGAAGAAGAACGCGGAGGAGCTCCAGACCAAGGTCTCCGCAAAAATCGACCAGCTGCAGAAGAATCTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS TCA 90 bp TGGCAAGGGGCATCATCGAGGTGTGCAGGTTGTCCACATTCTCCTTaGTCGTGGTCTGCATGCGCTGGATGTATGGGGTCAGCTGGAGCT +
Preference number: 5 (lower is better)
Translates to: WQGASSRCAGCPHSP*SWSACAGCMGSAGA
Trigger: AGCTCCAGCTGACCCCATACATCCAGCGCATGCAGACCACGATCAAGGAGAATGTGGACAACCTGCACACCTCGATGATGCCCCTTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 90 bp AGGAAGCTCAAGTGGCTTTCCACCTCCCCCGAATTGGGACCCAGCTaGTGTCTGAACTGTTCCAGCTGCTGCACCAGAGCCTTGTTGAAC +
Preference number: 5 (lower is better)
Translates to: RKLKWLSTSPELGPS*CLNCSSCCTRALLN
Trigger: GTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTTCAGACAGCAGCTGGGTCCCAATTCGGGGGAGGTGGAAAGCCACTTGAGCTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CCA 90 bp AAGGAGTTGACCTTCTCCCTCAGGCTCTTCTCCAGGAAGCTCAAGTaGCTTTCCACCTCCCCCGAATTGGGACCCAGCTGCTGTCTGAAC +
Preference number: 5 (lower is better)
Translates to: KELTFSLRLFSRKLK*LSTSPELGPSCCLN
Trigger: GTTCAGACAGCAGCTGGGTCCCAATTCGGGGGAGGTGGAAAGCCACTTGAGCTTCCTGGAGAAGAGCCTGAGGGAGAAGGTCAACTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS TCA 90 bp GGATGTATGGGGTCAGCTGGAGCTTCATTTCCTGGGTCTGTGTGTTaGTCTGATCTTGCAGGTCCACGGCATAGGGCTTCAGGTGCTCCT +
Preference number: 5 (lower is better)
Translates to: GCMGSAGASFPGSVC*SDLAGPRHRASGAP
Trigger: AGGAGCACCTGAAGCCCTATGCCGTGGACCTGCAAGATCAGATCAACACACAGACCCAGGAAATGAAGCTCCAGCTGACCCCATACATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CCA 90 bp GTGTGCAGGTTGTCCACATTCTCCTTGATCGTGGTCTGCATGCGCTaGATGTATGGGGTCAGCTGGAGCTTCATTTCCTGGGTCTGTGTG +
Preference number: 5 (lower is better)
Translates to: VCRLSTFSLIVVCMR*MYGVSWSFISWVCV
Trigger: CACACAGACCCAGGAAATGAAGCTCCAGCTGACCCCATACATCCAGCGCATGCAGACCACGATCAAGGAGAATGTGGACAACCTGCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CAA 90 bp TTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACTCCTCCAGCTCCTTCTaGATCTCTTCCTTCACCCTC +
Preference number: 5 (lower is better)
Translates to: FTSHRTCVLKLVQEVPGDSSSSF*ISSFTL
Trigger: GAGGGTGAAGGAAGAGATCAAGAAGGAGCTGGAGGA...GTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CAA 90 bp CTTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGATTGTCCACATTCTCCTaGATCGTGGTCTGCATGCGC +
Preference number: 5 (lower is better)
Translates to: LHLPQDMCPQAGTRSAWGLSTFS*IVVCMR
Trigger: GCGCATGCAGACCACGATCAAGGAGAATGTGGACAA...TCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CAA 90 bp AGATGTGGCTTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGATTTTTGCGGAGACCTaGGTCTGGAGCTCCTCCGCG +
Preference number: 5 (lower is better)
Translates to: RCGFTSHRTCVLKLVQEVIFAET*VWSSSA
Trigger: CGCGGAGGAGCTCCAGACCAAGGTCTCCGCAAAAAT...CACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAAGCCACATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CAA 90 bp AGATGTGGCTTCACCTCCCACAGGACATGTGTCCTCAAGCTGGTACAAGAAGTGGTGTTGCCCTTCACCTaGCTCTGCACGTCTTCCACC +
Preference number: 5 (lower is better)
Translates to: RCGFTSHRTCVLKLVQEVVLPFT*LCTSST
Trigger: GGTGGAAGACGTGCAGAGCAAGGTGAAGGGCAACAC...CACTTCTTGTACCAGCTTGAGGACACATGTCCTGTGGGAGGTGAAGCCACATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CCA 90 bp GTTGTCCACATTCTCCTTGATCGTGGTCTGCATGCGCTGGATGTATaGGGTCAGCTGGAGCTTCATTTCCTGGGTCTGTGTGTTGATCTG +
Preference number: 5 (lower is better)
Translates to: VVHILLDRGLHALDV*GQLELHFLGLCVDL
Trigger: CAGATCAACACACAGACCCAGGAAATGAAGCTCCAGCTGACCCCATACATCCAGCGCATGCAGACCACGATCAAGGAGAATGTGGACAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CAA 90 bp TCAGTTGCTTTATTGAGTAGCGAGATGTGGCTTCACCTCCCACAGGACATGTGTACAGCCTCCTTGGCATaGTTGCTTAGCTGGGTAAAG +
Preference number: 5 (lower is better)
Translates to: SVALLSSEMWLHLPQDMCTASLA*LLSWVK
Trigger: CTTTACCCAGCTAAGCAACAATGCCAAGGAGGCTGT...ACACATGTCCTGTGGGAGGTGAAGCCACATCTCGCTACTCAATAAAGCAACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CAA 90 bp TCAGTTGCTTTATTGAGTAGCGAGATGTGGCTTCACCTCCCACAGGACATGTGTTGTTCTACAGCCTCCTaGGCATTGTTGCTTAGCTGG +
Preference number: 5 (lower is better)
Translates to: SVALLSSEMWLHLPQDMCCSTAS*ALLLSW
Trigger: CCAGCTAAGCAACAATGCCAAGGAGGCTGTAGAACA...ACACATGTCCTGTGGGAGGTGAAGCCACATCTCGCTACTCAATAAAGCAACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS-3UTR CAA 90 bp GACATGTGTCCTCAAGCTGGTACAAGAAGTGCCTGGGGACAGAGTGACAGACAGATATTCCTGTTAAACTaGTCCTTTAAGTTGGTGGCA +
Preference number: 5 (lower is better)
Translates to: DMCPQAGTRSAWGQSDRQIFLLN*SFKLVA
Trigger: TGCCACCAACTTAAAGGACAAGTTTAACAGGAATAT...CTGTCTGTCACTCTGTCCCCAGGCACTTCTTGTACCAGCTTGAGGACACATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CCA 72 bp AGAGGGGCCAGGCTGCGGCGCAGATCCTCCAGGTTCTaGTCGATCGTGGCCTTCAGCTCGTTGGCACGGGGG +
Preference number: 6 (lower is better)
Translates to: RGARLRRRSSRF*SIVAFSSLARG
Trigger: CCCCCGTGCCAACGAGCTGAAGGCCACGATCGACCAGAACCTGGAGGATCTGCGCCGCAGCCTGGCCCCTCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 72 bp GAGACTTCTGCAGCCCTTCCGTGTTGCCCTTCACCTTaGTCTGCACGTCTTCCACCAGCGGGGCCAGATTCT +
Preference number: 6 (lower is better)
Translates to: ETSAALPCCPSP*SARLPPAGPDS
Trigger: AGAATCTGGCCCCGCTGGTGGAAGACGTGCAGAGCAAGGTGAAGGGCAACACGGAAGGGCTGCAGAAGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 72 bp AAGTGGCTTTCCACCTCCCCCGAATTGGGACCCAGCTaGTGTCTGAACTGTTCCAGCTGCTGCACCAGAGCC +
Preference number: 6 (lower is better)
Translates to: KWLSTSPELGPS*CLNCSSCCTRA
Trigger: GGCTCTGGTGCAGCAGCTGGAACAGTTCAGACAGCAGCTGGGTCCCAATTCGGGGGAGGTGGAAAGCCACTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 72 bp CCAGCGGGGCCAGATTCTTCTGCAGCTGGTCGATTTTaGCGGAGACCTTGGTCTGGAGCTCCTCCGCGTTCT +
Preference number: 6 (lower is better)
Translates to: PAGPDSSAAGRF*RRPWSGAPPRS
Trigger: AGAACGCGGAGGAGCTCCAGACCAAGGTCTCCGCAAAAATCGACCAGCTGCAGAAGAATCTGGCCCCGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 90 bp AGGTCTTCCAGAGACTTCTGCAGCCCTTCCGTGTTGCCCTTCACCTaGCTCTGCACGTCTTCCACCAGCGGGGCCAGATTCTTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: RSSRDFCSPSVLPFT*LCTSSTSGARFFCS
Trigger: GCTGCAGAAGAATCTGGCCCCGCTGGTGGAAGACGTGCAGAGCAAGGTGAAGGGCAACACGGAAGGGCTGCAGAAGTCTCTGGAAGACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 90 bp CCCAGCTGCTGTCTGAACTGTTCCAGCTGCTGCACCAGAGCCTTGTaGAACATCTCTCCCATGGGCTCCACAGTGCGTCGGAACTCCTCC +
Preference number: 6 (lower is better)
Translates to: PSCCLNCSSCCTRAL*NISPMGSTVRRNSS
Trigger: GGAGGAGTTCCGACGCACTGTGGAGCCCATGGGAGAGATGTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTTCAGACAGCAGCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 90 bp GGACCCAGCTGCTGTCTGAACTGTTCCAGCTGCTGCACCAGAGCCTaGTTGAACATCTCTCCCATGGGCTCCACAGTGCGTCGGAACTCC +
Preference number: 6 (lower is better)
Translates to: GPSCCLNCSSCCTRA*LNISPMGSTVRRNS
Trigger: GGAGTTCCGACGCACTGTGGAGCCCATGGGAGAGATGTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTTCAGACAGCAGCTGGGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 90 bp GTGGCAAGGGGCATCATCGAGGTGTGCAGGTTGTCCACATTCTCCTaGATCGTGGTCTGCATGCGCTGGATGTATGGGGTCAGCTGGAGC +
Preference number: 6 (lower is better)
Translates to: VARGIIEVCRLSTFS*IVVCMRWMYGVSWS
Trigger: GCTCCAGCTGACCCCATACATCCAGCGCATGCAGACCACGATCAAGGAGAATGTGGACAACCTGCACACCTCGATGATGCCCCTTGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 90 bp AGCGGGGCCAGATTCTTCTGCAGCTGGTCGATTTTTGCGGAGACCTaGGTCTGGAGCTCCTCCGCGTTCTTCTTCATCTGGAAGGCCAGG +
Preference number: 6 (lower is better)
Translates to: SGARFFCSWSIFAET*VWSSSAFFFIWKAR
Trigger: CCTGGCCTTCCAGATGAAGAAGAACGCGGAGGAGCTCCAGACCAAGGTCTCCGCAAAAATCGACCAGCTGCAGAAGAATCTGGCCCCGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 90 bp AGGCTCTTCTCCAGGAAGCTCAAGTGGCTTTCCACCTCCCCCGAATaGGGACCCAGCTGCTGTCTGAACTGTTCCAGCTGCTGCACCAGA +
Preference number: 6 (lower is better)
Translates to: RLFSRKLKWLSTSPE*GPSCCLNCSSCCTR
Trigger: TCTGGTGCAGCAGCTGGAACAGTTCAGACAGCAGCTGGGTCCCAATTCGGGGGAGGTGGAAAGCCACTTGAGCTTCCTGGAGAAGAGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 72 bp CAGCGGGGCCAGATTCTTCTGCAGCTGGTCGATTTTTaGGGAGACCTTGGTCTGGAGCTCCTCCGCGTTCTT +
Preference number: 6 (lower is better)
Translates to: QRGQILLQLVDF*GDLGLELLRVL
Trigger: AAGAACGCGGAGGAGCTCCAGACCAAGGTCTCCGCAAAAATCGACCAGCTGCAGAAGAATCTGGCCCCGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 72 bp TCCAGGAAGCTCAAGTGGCTTTCCACCTCCCCCGAATaGGGACCCAGCTGCTGTCTGAACTGTTCCAGCTGC +
Preference number: 6 (lower is better)
Translates to: SRKLKWLSTSPE*GPSCCLNCSSC
Trigger: GCAGCTGGAACAGTTCAGACAGCAGCTGGGTCCCAATTCGGGGGAGGTGGAAAGCCACTTGAGCTTCCTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS TCA 72 bp GCGTTCTTCTTCATCTGGAAGGCCAGGCCCTCCATCTaGTGGTTGAGTTTCTCCTGCACGCCCACCGTCAGA +
Preference number: 6 (lower is better)
Translates to: AFFFIWKARPSI*WLSFSCTPTVR
Trigger: TCTGACGGTGGGCGTGCAGGAGAAACTCAACCATCAGATGGAGGGCCTGGCCTTCCAGATGAAGAAGAACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 72 bp TTGGGACCCAGCTGCTGTCTGAACTGTTCCAGCTGCTaGACCAGAGCCTTGTTGAACATCTCTCCCATGGGC +
Preference number: 6 (lower is better)
Translates to: LGPSCCLNCSSC*TRALLNISPMG
Trigger: GCCCATGGGAGAGATGTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTTCAGACAGCAGCTGGGTCCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 72 bp TGTCTGAACTGTTCCAGCTGCTGCACCAGAGCCTTGTaGAACATCTCTCCCATGGGCTCCACAGTGCGTCGG +
Preference number: 6 (lower is better)
Translates to: CLNCSSCCTRAL*NISPMGSTVRR
Trigger: CCGACGCACTGTGGAGCCCATGGGAGAGATGTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTTCAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 90 bp TTGGCATGGGGCATCATGCGGTCACGTAGGTCCTCCAGCTCCTTCTaGATCTCTTCCTTCACCCTCTCAGTTTCCTGGGCTAGATGCCCA +
Preference number: 6 (lower is better)
Translates to: LAWGIMRSRRSSSSF*ISSFTLSVSWARCP
Trigger: TGGGCATCTAGCCCAGGAAACTGAGAGGGTGAAGGAAGAGATCAAGAAGGAGCTGGAGGACCTACGTGACCGCATGATGCCCCATGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 72 bp GTGTGCAGGTTGTCCACATTCTCCTTGATCGTGGTCTaGATGCGCTGGATGTATGGGGTCAGCTGGAGCTTC +
Preference number: 6 (lower is better)
Translates to: VCRLSTFSLIVV*MRWMYGVSWSF
Trigger: GAAGCTCCAGCTGACCCCATACATCCAGCGCATGCAGACCACGATCAAGGAGAATGTGGACAACCTGCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CCA 72 bp TTCTGCAGCTGGTCGATTTTTGCGGAGACCTTGGTCTaGAGCTCCTCCGCGTTCTTCTTCATCTGGAAGGCC +
Preference number: 6 (lower is better)
Translates to: FCSWSIFAETLV*SSSAFFFIWKA
Trigger: GGCCTTCCAGATGAAGAAGAACGCGGAGGAGCTCCAGACCAAGGTCTCCGCAAAAATCGACCAGCTGCAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 72 bp TGCTGTCTGAACTGTTCCAGCTGCTGCACCAGAGCCTaGTTGAACATCTCTCCCATGGGCTCCACAGTGCGT +
Preference number: 6 (lower is better)
Translates to: CCLNCSSCCTRA*LNISPMGSTVR
Trigger: ACGCACTGTGGAGCCCATGGGAGAGATGTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTTCAGACAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS GCA 72 bp GAATTGGGACCCAGCTGCTGTCTGAACTGTTCCAGCTaGTGCACCAGAGCCTTGTTGAACATCTCTCCCATG +
Preference number: 6 (lower is better)
Translates to: ELGPSCCLNCSS*CTRALLNISPM
Trigger: CATGGGAGAGATGTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTTCAGACAGCAGCTGGGTCCCAATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CCA 72 bp TTGTCCACATTCTCCTTGATCGTGGTCTGCATGCGCTaGATGTATGGGGTCAGCTGGAGCTTCATTTCCTGG +
Preference number: 6 (lower is better)
Translates to: LSTFSLIVVCMR*MYGVSWSFISW
Trigger: CCAGGAAATGAAGCTCCAGCTGACCCCATACATCCAGCGCATGCAGACCACGATCAAGGAGAATGTGGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CCA 72 bp GATTCTTCTGCAGCTGGTCGATTTTTGCGGAGACCTTaGTCTGGAGCTCCTCCGCGTTCTTCTTCATCTGGA +
Preference number: 6 (lower is better)
Translates to: DSSAAGRFLRRP*SGAPPRSSSSG
Trigger: TCCAGATGAAGAAGAACGCGGAGGAGCTCCAGACCAAGGTCTCCGCAAAAATCGACCAGCTGCAGAAGAATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 72 bp AGATTCTTCTGCAGCTGGTCGATTTTTGCGGAGACCTaGGTCTGGAGCTCCTCCGCGTTCTTCTTCATCTGG +
Preference number: 6 (lower is better)
Translates to: RFFCSWSIFAET*VWSSSAFFFIW
Trigger: CCAGATGAAGAAGAACGCGGAGGAGCTCCAGACCAAGGTCTCCGCAAAAATCGACCAGCTGCAGAAGAATCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 90 bp TGCCCCTTGAGCTCTTCCATATTCCTGTTAAACTTGTCCTTTAAGTaGGTGGCAAGGGGCATCATCGAGGTGTGCAGGTTGTCCACATTC +
Preference number: 6 (lower is better)
Translates to: CPLSSSIFLLNLSFK*VARGIIEVCRLSTF
Trigger: GAATGTGGACAACCTGCACACCTCGATGATGCCCCTTGCCACCAACTTAAAGGACAAGTTTAACAGGAATATGGAAGAGCTCAAGGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 72 bp AGGTGCCCCTTGAGCTCTTCCATATTCCTGTTAAACTaGTCCTTTAAGTTGGTGGCAAGGGGCATCATCGAG +
Preference number: 6 (lower is better)
Translates to: RCPLSSSIFLLN*SFKLVARGIIE
Trigger: CTCGATGATGCCCCTTGCCACCAACTTAAAGGACAAGTTTAACAGGAATATGGAAGAGCTCAAGGGGCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7
CDS CAA 72 bp AGCTCTTCCATATTCCTGTTAAACTTGTCCTTTAAGTaGGTGGCAAGGGGCATCATCGAGGTGTGCAGGTTG +
Preference number: 6 (lower is better)
Translates to: SSSIFLLNLSFK*VARGIIEVCRL
Trigger: CAACCTGCACACCTCGATGATGCCCCTTGCCACCAACTTAAAGGACAAGTTTAACAGGAATATGGAAGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034585.7