Pregenerated sensors for APOA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005681Ensembl transcript IDs: ENSMUST00000005824.12, ENSMUST00000111319.2, ENSMUST00000111320.8, ENSMUST00000111321.8
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCCGCATTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGTGGAGCAGCTGGGGTaGGAAGACTGGGCCTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: SAFIGENRQKVGRGALAVVEQLG*EDWAWH Trigger: GTGCCAGGCCCAGTCTTCCCACCCCAGCTGCTCCAC...CACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAATGCGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| 3UTR-3UTR CCA 90 bp | TTTAACTCCTTCCGCATTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCGGCCAGTGGAGCAGCTaGGGTGGGAAGACTGGGCCT | + |
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Preference number: 2 (lower is better) Translates to: FNSFRIYWRKQAEGRERGGQWSS*GGKTGP Trigger: AGGCCCAGTCTTCCCACCCCAGCTGCTCCACTGGCC...GCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAATGCGGAAGGAGTTAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | GCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTGGAGCAGCTGGGGTGGGCAGACTAGTTCCTGCTaGCCTGACAAGGGGTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: AEGRERGSSGGQWSSWGGQTSSC*PDKGCQ Trigger: CTGACACCCCTTGTCAGGTCAGCAGGAACTAGTCTG...CCCACCCCAGCTGCTCCACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | GCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTGGAGCAGCTGGGGTGGGCTGGCTCTGAATCTCTaGGGTCTTGGCCTTCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: AEGRERGSSGGQWSSWGGLALNL*GLGLLH Trigger: ATGGAGAAGGCCAAGACCTCAGAGATTCAGAGCCAG...CCCACCCCAGCTGCTCCACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | TATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTGGGCCTTGGCCTGGCTCTaGATCTCTGAGGTCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: YWRKQAEGRERGSSGGQWALAWL*ISEVLA Trigger: GGCCAAGACCTCAGAGATTCAGAGCCAGGCCAAGGC...CCACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | ATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTGGAGCCTTGGCCTGGCTCTaGATCTCTGAGGTCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: IGENRQKVGRGALAVASGALAWL*ISEVLA Trigger: GGCCAAGACCTCAGAGATTCAGAGCCAGGCCAAGGC...TCCACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | AGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTGGAGCAGCCAGACTAGTTCCTGCTaGCCTGACAAGGGGTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: RKQAEGRERGSSGGQWSSQTSSC*PDKGCQ Trigger: CTGACACCCCTTGTCAGGTCAGCAGGAACTAGTCTG...GCTGCTCCACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | AGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTGGAGCAGCCTGGCTCTGAATCTCTaGGGTCTTGGCCTTCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: RKQAEGRERGSSGGQWSSLALNL*GLGLLH Trigger: ATGGAGAAGGCCAAGACCTCAGAGATTCAGAGCCAG...GCTGCTCCACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | TCCGCATTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCTTGGCCTGGCTCTaGATCTCTGAGGTCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SAFIGENRQKVGRGALAVALAWL*ISEVLA Trigger: GGCCAAGACCTCAGAGATTCAGAGCCAGGCCAAGGC...CACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAATGCGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | AGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTGGAGCAGCTCTGAAAGTATTGAGTaGACAGGCTCTGCATATCCG | + |
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Preference number: 4 (lower is better) Translates to: RKQAEGRERGSSGGQWSSSESIE*TGSAYP Trigger: CGGATATGCAGAGCCTGTTCACTCAATACTTTCAGA...GCTGCTCCACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | TTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTCAGACTAGTTCCTGCTaGCCTGACAAGGGGTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: FIGENRQKVGRGALAVASQTSSC*PDKGCQ Trigger: CTGACACCCCTTGTCAGGTCAGCAGGAACTAGTCTG...ACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR GCA 90 bp | TATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTGGTGTCTTCTCAAAGTATaGCTTGGCCTGGCTCTGAAT | + |
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Preference number: 4 (lower is better) Translates to: YWRKQAEGRERGSSGGQWCLLKV*LGLALN Trigger: ATTCAGAGCCAGGCCAAGGCATACTTTGAGAAGACA...CCACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | ATTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTCTGAAAGTATTGAGTaGACAGGCTCTGCATATCCG | + |
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Preference number: 4 (lower is better) Translates to: IYWRKQAEGRERGSSGGQSESIE*TGSAYP Trigger: CGGATATGCAGAGCCTGTTCACTCAATACTTTCAGA...CTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR GCA 90 bp | TCCGCATTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGTGTCTTCTCAAAGTATaGCTTGGCCTGGCTCTGAAT | + |
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Preference number: 4 (lower is better) Translates to: SAFIGENRQKVGRGALAVCLLKV*LGLALN Trigger: ATTCAGAGCCAGGCCAAGGCATACTTTGAGAAGACA...CACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAATGCGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR TCA 90 bp | TTAACTCCTTCCGCATTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTTCTGAAAGTATTGAGTaGACAGGCTCTGCATATCCG | + |
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Preference number: 4 (lower is better) Translates to: LTPSAFIGENRQKVGRGASESIE*TGSAYP Trigger: CGGATATGCAGAGCCTGTTCACTCAATACTTTCAGA...AGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAATGCGGAAGGAGTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR GCA 90 bp | TTAACTCCTTCCGCATTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTTGTCTTCTCAAAGTATaGCTTGGCCTGGCTCTGAAT | + |
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Preference number: 4 (lower is better) Translates to: LTPSAFIGENRQKVGRGACLLKV*LGLALN Trigger: ATTCAGAGCCAGGCCAAGGCATACTTTGAGAAGACA...AGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAATGCGGAAGGAGTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR CAA 90 bp | GCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCAGTGGAGCAGCTGGGGTGGGCATGCTCTGAAAGTATaGAGTGAACAGGCTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: AEGRERGSSGGQWSSWGGHALKV*SEQALH Trigger: ATGCAGAGCCTGTTCACTCAATACTTTCAGAGCATG...CCCACCCCAGCTGCTCCACTGGCCACCGCTAGAGCCCCTCTCCCTACCTTCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS GCA 90 bp | GCTCTGAAAGTATTGAGTGAACAGGCTCTGCATATCCGGTCCGTCTaGCTGTCTCTTAACCAAAGCTCCTTCCAGGCTACAGATGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: ALKVLSEQALHIRSV*LSLNQSSFQATDGD Trigger: GTCACCATCTGTAGCCTGGAAGGAGCTTTGGTTAAGAGACAGGCAGACGGACCGGATATGCAGAGCCTGTTCACTCAATACTTTCAGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005824.12 ENSMUST00000111319.2 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR CAA 90 bp | CGCATTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCTCTAGCGGTGGCCATGCTCTGAAAGTATaGAGTGAACAGGCTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: RIYWRKQAEGRERGSSGGHALKV*SEQALH Trigger: ATGCAGAGCCTGTTCACTCAATACTTTCAGAGCATG...GCCACCGCTAGAGCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAATGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS TCA 90 bp | CTCGTGTGTCTTCTCAAAGTATGCCTTGGCCTGGCTCTGAATCTCTaGGGTCTTGGCCTTCTCCATCAAATCTTTGCCATAATCAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: LVCLLKVCLGLALNL*GLGLLHQIFAIISH Trigger: ATGACTGATTATGGCAAAGATTTGATGGAGAAGGCCAAGACCTCAGAGATTCAGAGCCAGGCCAAGGCATACTTTGAGAAGACACACGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005824.12 ENSMUST00000111319.2 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS-3UTR CAA 90 bp | TTTAACTCCTTCCGCATTTATTGGAGAAAACAGGCAGAAGGTAGGGAGAGGGGCCATGCTCTGAAAGTATaGAGTGAACAGGCTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: FNSFRIYWRKQAEGRERGHALKV*SEQALH Trigger: ATGCAGAGCCTGTTCACTCAATACTTTCAGAGCATG...GCCCCTCTCCCTACCTTCTGCCTGTTTTCTCCAATAAATGCGGAAGGAGTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005824.12 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS CCA 90 bp | TCTTCTCAAAGTATGCCTTGGCCTGGCTCTGAATCTCTGAGGTCTTaGCCTTCTCCATCAAATCTTTGCCATAATCAGTCATGCTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: SSQSMPWPGSESLRS*PSPSNLCHNQSCSE Trigger: TTCAGAGCATGACTGATTATGGCAAAGATTTGATGGAGAAGGCCAAGACCTCAGAGATTCAGAGCCAGGCCAAGGCATACTTTGAGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005824.12 ENSMUST00000111319.2 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS CCA 72 bp | GTGTCAGCTGCTCGTGTGTCTTCTCAAAGTATGCCTTaGCCTGGCTCTGAATCTCTGAGGTCTTGGCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: VSAARVSSQSMP*PGSESLRSWPS Trigger: AGAAGGCCAAGACCTCAGAGATTCAGAGCCAGGCCAAGGCATACTTTGAGAAGACACACGAGCAGCTGACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005824.12 ENSMUST00000111319.2 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS TCA 72 bp | CTTTGCCATAATCAGTCATGCTCTGAAAGTATTGAGTaGACAGGCTCTGCATATCCGGTCCGTCTGCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LCHNQSCSESIE*TGSAYPVRLPV Trigger: GACAGGCAGACGGACCGGATATGCAGAGCCTGTTCACTCAATACTTTCAGAGCATGACTGATTATGGCAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005824.12 ENSMUST00000111319.2 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS CAA 90 bp | CTTCTCCATCAAATCTTTGCCATAATCAGTCATGCTCTGAAAGTATaGAGTGAACAGGCTCTGCATATCCGGTCCGTCTGCCTGTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LLHQIFAIISHALKV*SEQALHIRSVCLSL Trigger: AAGAGACAGGCAGACGGACCGGATATGCAGAGCCTGTTCACTCAATACTTTCAGAGCATGACTGATTATGGCAAAGATTTGATGGAGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005824.12 ENSMUST00000111319.2 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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| CDS CAA 72 bp | CAAATCTTTGCCATAATCAGTCATGCTCTGAAAGTATaGAGTGAACAGGCTCTGCATATCCGGTCCGTCTGC | + |
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Preference number: 6 (lower is better) Translates to: QIFAIISHALKV*SEQALHIRSVC Trigger: GCAGACGGACCGGATATGCAGAGCCTGTTCACTCAATACTTTCAGAGCATGACTGATTATGGCAAAGATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005824.12 ENSMUST00000111319.2 ENSMUST00000111320.8 ENSMUST00000111321.8 |
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