Pregenerated sensors for APOA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032083Ensembl transcript IDs: ENSMUST00000034588.9, ENSMUST00000132155.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTGGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCTGGCGCGCGCTCTCCTaGAGCTCGGCGCCCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: LERFIVRKPMRGWGVEAGWRALS*SSAPRG Trigger: GCCTCTGGGCGCCGAGCTGCAGGAGAGCGCGCGCCA...GCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCCAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR GCA 90 bp | TTTGGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCTCCCTTGCAGCTCCTaGAGCTTCTGGCGCGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: FGKVYCKKANAGVGSGSGLPCSS*SFWRAL Trigger: GAGCGCGCGCCAGAAGCTGCAGGAGCTGCAAGGGAG...CCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCCAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR CCA 90 bp | GGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCACCATACGTGCCAAGCCTaGCTCCCTGTCAGGAAGACC | + |
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Preference number: 4 (lower is better) Translates to: GKVYCKKANAGVGSGSGHHTCQA*LPVRKT Trigger: GGTCTTCCTGACAGGGAGCCAGGCTTGGCACGTATG...GTGCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR CCA 90 bp | TTGGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCGAAGTCCCGAGTCAATaGGCCCAGCCGTTCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LERFIVRKPMRGWGVEAGEVPSQ*AQPFLQ Trigger: CTGCAGGAACGGCTGGGCCCATTGACTCGGGACTTC...GCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR GCA 90 bp | TTGGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCTCTTGCTGCCATACGTaGCAAGCCTGGCTCCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LERFIVRKPMRGWGVEAGSCCHT*QAWLPV Trigger: GACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGA...GCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR GCA 90 bp | GAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCACCTGGGGTTCATCTTGCTaGCATACGTGCCAAGCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: ERFIVRKPMRGWGVEAGTWGSSC*HTCQAW Trigger: CCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCA...GGTGCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR CCA 90 bp | GGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCACGGTGGGTTTTGGCCCTaGTGTGGTACTCGTTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: GKVYCKKANAGVGSGSGHGGFWP*CGTRSR Trigger: CCTTGAACGAGTACCACACCAGGGCCAAAACCCACC...GTGCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR CCA 90 bp | GAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCACCCCAAGTGTCTTCAGGTaGGTTTTGGCCCTGGTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: ERFIVRKPMRGWGVEAGTPSVFR*VLALVW Trigger: CCACACCAGGGCCAAAACCCACCTGAAGACACTTGG...GGTGCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR CCA 90 bp | GAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCACCTCTTCAGGTGGGTTTTaGCCCTGGTGTGGTACTCGT | + |
|
Preference number: 4 (lower is better) Translates to: ERFIVRKPMRGWGVEAGTSSGGF*PWCGTR Trigger: ACGAGTACCACACCAGGGCCAAAACCCACCTGAAGA...GGTGCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR TCA 90 bp | TTGGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCCTCTGCCGCTGTCTTTaGCCGCATCCACATACACAT | + |
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Preference number: 4 (lower is better) Translates to: LERFIVRKPMRGWGVEAGLCRCL*PHPHTH Trigger: ATGTGTATGTGGATGCGGTCAAAGACAGCGGCAGAG...GCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR CCA 90 bp | GGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCACTTCACTTTGTCCCATTaGGACTGGGGTTCATCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: GKVYCKKANAGVGSGSGHFTLSH*DWGSSC Trigger: GCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAA...GTGCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR CCA 90 bp | TTGGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCTTCAGGTTCAGCTGTTaGCCCAAGGAGGAGGATTCA | + |
|
Preference number: 4 (lower is better) Translates to: LERFIVRKPMRGWGVEAGFRFSC*PKEEDS Trigger: TGAATCCTCCTCCTTGGGCCAACAGCTGAACCTGAA...GCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CCA 90 bp | TCCTCAGCCACAGGGGACAGTCTCCCTTGCAGCTCCTGCAGCTTCTaGCGCGCGCTCTCCTGCAGCTCGGCGCCCAGAGGCGCCACCTTC | + |
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Preference number: 5 (lower is better) Translates to: SSATGDSLPCSSCSF*RALSCSSAPRGATF Trigger: GAAGGTGGCGCCTCTGGGCGCCGAGCTGCAGGAGAGCGCGCGCCAGAAGCTGCAGGAGCTGCAAGGGAGACTGTCCCCTGTGGCTGAGGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 90 bp | TCGCGAAATTCCTCAGCCACAGGGGACAGTCTCCCTTGCAGCTCCTaGAGCTTCTGGCGCGCGCTCTCCTGCAGCTCGGCGCCCAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: SRNSSATGDSLPCSS*SFWRALSCSSAPRG Trigger: GCCTCTGGGCGCCGAGCTGCAGGAGAGCGCGCGCCAGAAGCTGCAGGAGCTGCAAGGGAGACTGTCCCCTGTGGCTGAGGAATTTCGCGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 90 bp | GTTCGCTGTGGGGCGCTAGCTGTGTGCGCAGAGAGTCTACGTGTGTaGGCATGCGGTCGCGAAATTCCTCAGCCACAGGGGACAGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: VRCGALAVCAESLRV*ACGREIPQPQGTVS Trigger: GGAGACTGTCCCCTGTGGCTGAGGAATTTCGCGACCGCATGCGCACACACGTAGACTCTCTGCGCACACAGCTAGCGCCCCACAGCGAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 90 bp | TGTGGGGCGCTAGCTGTGTGCGCAGAGAGTCTACGTGTGTGCGCATaGGGTCGCGAAATTCCTCAGCCACAGGGGACAGTCTCCCTTGCA | + |
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Preference number: 5 (lower is better) Translates to: CGALAVCAESLRVCA*GREIPQPQGTVSLA Trigger: TGCAAGGGAGACTGTCCCCTGTGGCTGAGGAATTTCGCGACCGCATGCGCACACACGTAGACTCTCTGCGCACACAGCTAGCGCCCCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 90 bp | TTCACTTTGTCCCATTGGGACTGGGGTTCATCTTGCTGCCATACGTaGCAAGCCTGGCTCCCTGTCAGGAAGACCAGAGCCACGGCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: FTLSHWDWGSSCCHT*QAWLPVRKTRATAS Trigger: GCTGGCCGTGGCTCTGGTCTTCCTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CCA 90 bp | CTCTGGACTTGGGTCTTAAGCGTCTCCAGCATGGGCATCAGACTATaGCGCAGGTCCTCCAGCGCAGGTCTGGCTTTCTCGCCAAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: LWTWVLSVSSMGIRL*RRSSSAGLAFSPSV Trigger: GACACTTGGCGAGAAAGCCAGACCTGCGCTGGAGGACCTGCGCCATAGTCTGATGCCCATGCTGGAGACGCTTAAGACCCAAGTCCAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CCA 90 bp | AGGTCCTCCAGCGCAGGTCTGGCTTTCTCGCCAAGTGTCTTCAGGTaGGTTTTGGCCCTGGTGTGGTACTCGTTCAAGGTAGGGTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: RSSSAGLAFSPSVFR*VLALVWYSFKVGLL Trigger: GAGCAACCCTACCTTGAACGAGTACCACACCAGGGCCAAAACCCACCTGAAGACACTTGGCGAGAAAGCCAGACCTGCGCTGGAGGACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 90 bp | GCGAAATCCTTCACTTTGTCCCATTGGGACTGGGGTTCATCTTGCTaGCATACGTGCCAAGCCTGGCTCCCTGTCAGGAAGACCAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: AKSFTLSHWDWGSSC*HTCQAWLPVRKTRA Trigger: GGCTCTGGTCTTCCTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS-3UTR CAA 90 bp | GGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCACGTCTTCAGGTGGGTTTaGGCCCTGGTGTGGTACTCG | + |
|
Preference number: 5 (lower is better) Translates to: GKVYCKKANAGVGSGSGHVFRWV*ALVWYS Trigger: CGAGTACCACACCAGGGCCAAAACCCACCTGAAGAC...GTGCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR CAA 90 bp | TTTGGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGAGGGGACAGTCTCCCTaGCAGCTCCTGCAGCTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: FGKVYCKKANAGVGSGSGRGQSP*QLLQLL Trigger: CAGAAGCTGCAGGAGCTGCAAGGGAGACTGTCCCCT...CCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCCAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS-3UTR CAA 90 bp | GGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCACTCGTTCAAGGTAGGGTaGCTCTTGAGCTCAGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: GKVYCKKANAGVGSGSGHSFKVG*LLSSAR Trigger: CCTGGCTGAGCTCAAGAGCAACCCTACCTTGAACGA...GTGCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS TCA 90 bp | TTATCCCAGAAGTCCCGAGTCAATGGGCCCAGCCGTTCCTGCAGCTaGCTAACGGTTGAACCCAGAGTGTCCCAGTTTTCCAGGAGATTC | + |
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Preference number: 5 (lower is better) Translates to: LSQKSRVNGPSRSCS*LTVEPRVSQFSRRF Trigger: GAATCTCCTGGAAAACTGGGACACTCTGGGTTCAACCGTTAGTCAGCTGCAGGAACGGCTGGGCCCATTGACTCGGGACTTCTGGGATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS-3UTR CAA 90 bp | GAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGCACCTCTCTGCCGCTGTCTTaGACCGCATCCACATACACA | + |
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Preference number: 5 (lower is better) Translates to: ERFIVRKPMRGWGVEAGTSLPLS*TASTYT Trigger: TGTGTATGTGGATGCGGTCAAAGACAGCGGCAGAGA...GGTGCCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 90 bp | TTAGCGAAATCCTTCACTTTGTCCCATTGGGACTGGGGTTCATCTTaGTGCCATACGTGCCAAGCCTGGCTCCCTGTCAGGAAGACCAGA | + |
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Preference number: 5 (lower is better) Translates to: LAKSFTLSHWDWGSS*CHTCQAWLPVRKTR Trigger: TCTGGTCTTCCTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CCA 90 bp | TCCACATACACATTAGCGAAATCCTTCACTTTGTCCCATTGGGACTaGGGTTCATCTTGCTGCCATACGTGCCAAGCCTGGCTCCCTGTC | + |
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Preference number: 5 (lower is better) Translates to: STYTLAKSFTLSHWD*GSSCCHTCQAWLPV Trigger: GACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGCTAATGTGTATGTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CCA 90 bp | ACCGCATCCACATACACATTAGCGAAATCCTTCACTTTGTCCCATTaGGACTGGGGTTCATCTTGCTGCCATACGTGCCAAGCCTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: TASTYTLAKSFTLSH*DWGSSCCHTCQAWL Trigger: GAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGCTAATGTGTATGTGGATGCGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS-3UTR CAA 90 bp | TTTGGAAAGGTTTATTGTAAGAAAGCCAATGCGGGGGTGGGGAGTGGAAGCGGGACTTCCTCTAGGTCCTaGTTCATCTCCTGTCTCACC | + |
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Preference number: 5 (lower is better) Translates to: FGKVYCKKANAGVGSGSGTSSRS*FISCLT Trigger: GGTGAGACAGGAGATGAACAAGGACCTAGAGGAAGT...CCCGCTTCCACTCCCCACCCCCGCATTGGCTTTCTTACAATAAACCTTTCCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 72 bp | CCTTGCAGCTCCTGCAGCTTCTGGCGCGCGCTCTCCTaGAGCTCGGCGCCCAGAGGCGCCACCTTCTGGCGG | + |
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Preference number: 6 (lower is better) Translates to: PCSSCSFWRALS*SSAPRGATFWR Trigger: CCGCCAGAAGGTGGCGCCTCTGGGCGCCGAGCTGCAGGAGAGCGCGCGCCAGAAGCTGCAGGAGCTGCAAGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 72 bp | TCCTCAGCCACAGGGGACAGTCTCCCTTGCAGCTCCTaGAGCTTCTGGCGCGCGCTCTCCTGCAGCTCGGCG | + |
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Preference number: 6 (lower is better) Translates to: SSATGDSLPCSS*SFWRALSCSSA Trigger: CGCCGAGCTGCAGGAGAGCGCGCGCCAGAAGCTGCAGGAGCTGCAAGGGAGACTGTCCCCTGTGGCTGAGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CCA 72 bp | AGGCGCTGGGCCAGGCTCTCGCGCATCTGTTCGCTGTaGGGCGCTAGCTGTGTGCGCAGAGAGTCTACGTGT | + |
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Preference number: 6 (lower is better) Translates to: RRWARLSRICSL*GASCVRRESTC Trigger: ACACGTAGACTCTCTGCGCACACAGCTAGCGCCCCACAGCGAACAGATGCGCGAGAGCCTGGCCCAGCGCCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 72 bp | GGGGCGCTAGCTGTGTGCGCAGAGAGTCTACGTGTGTaGGCATGCGGTCGCGAAATTCCTCAGCCACAGGGG | + |
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Preference number: 6 (lower is better) Translates to: GALAVCAESLRV*ACGREIPQPQG Trigger: CCCCTGTGGCTGAGGAATTTCGCGACCGCATGCGCACACACGTAGACTCTCTGCGCACACAGCTAGCGCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CCA 72 bp | GACTGGGGTTCATCTTGCTGCCATACGTGCCAAGCCTaGCTCCCTGTCAGGAAGACCAGAGCCACGGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: DWGSSCCHTCQA*LPVRKTRATAS Trigger: GCTGGCCGTGGCTCTGGTCTTCCTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS GCA 72 bp | TCCCATTGGGACTGGGGTTCATCTTGCTGCCATACGTaGCAAGCCTGGCTCCCTGTCAGGAAGACCAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: SHWDWGSSCCHT*QAWLPVRKTRA Trigger: GGCTCTGGTCTTCCTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS GCA 72 bp | CTAGCTGTGTGCGCAGAGAGTCTACGTGTGTGCGCATaGGGTCGCGAAATTCCTCAGCCACAGGGGACAGTC | + |
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Preference number: 6 (lower is better) Translates to: LAVCAESLRVCA*GREIPQPQGTV Trigger: GACTGTCCCCTGTGGCTGAGGAATTTCGCGACCGCATGCGCACACACGTAGACTCTCTGCGCACACAGCTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CCA 72 bp | TGGGTCTTAAGCGTCTCCAGCATGGGCATCAGACTATaGCGCAGGTCCTCCAGCGCAGGTCTGGCTTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: WVLSVSSMGIRL*RRSSSAGLAFS Trigger: CGAGAAAGCCAGACCTGCGCTGGAGGACCTGCGCCATAGTCTGATGCCCATGCTGGAGACGCTTAAGACCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 72 bp | TCCTTCACTTTGTCCCATTGGGACTGGGGTTCATCTTaGTGCCATACGTGCCAAGCCTGGCTCCCTGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: SFTLSHWDWGSS*CHTCQAWLPVR Trigger: CCTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CCA 72 bp | GCAGTCAGAGTCTCGCTGGCCTTGTCGATCACACTCTaGACTTGGGTCTTAAGCGTCTCCAGCATGGGCATC | + |
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Preference number: 6 (lower is better) Translates to: AVRVSLALSITL*TWVLSVSSMGI Trigger: GATGCCCATGCTGGAGACGCTTAAGACCCAAGTCCAGAGTGTGATCGACAAGGCCAGCGAGACTCTGACTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS GCA 72 bp | TTCACTTTGTCCCATTGGGACTGGGGTTCATCTTGCTaGCATACGTGCCAAGCCTGGCTCCCTGTCAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: FTLSHWDWGSSC*HTCQAWLPVRK Trigger: CTTCCTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CCA 72 bp | AGCGCAGGTCTGGCTTTCTCGCCAAGTGTCTTCAGGTaGGTTTTGGCCCTGGTGTGGTACTCGTTCAAGGTA | + |
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Preference number: 6 (lower is better) Translates to: SAGLAFSPSVFR*VLALVWYSFKV Trigger: TACCTTGAACGAGTACCACACCAGGGCCAAAACCCACCTGAAGACACTTGGCGAGAAAGCCAGACCTGCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CAA 72 bp | ATCCTTCACTTTGTCCCATTGGGACTGGGGTTCATCTaGCTGCCATACGTGCCAAGCCTGGCTCCCTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: ILHFVPLGLGFI*LPYVPSLAPCQ Trigger: CTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CAA 72 bp | GGTCTGGCTTTCTCGCCAAGTGTCTTCAGGTGGGTTTaGGCCCTGGTGTGGTACTCGTTCAAGGTAGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: GLAFSPSVFRWV*ALVWYSFKVGL Trigger: CAACCCTACCTTGAACGAGTACCACACCAGGGCCAAAACCCACCTGAAGACACTTGGCGAGAAAGCCAGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CAA 72 bp | CAGAGTCTCGCTGGCCTTGTCGATCACACTCTGGACTaGGGTCTTAAGCGTCTCCAGCATGGGCATCAGACT | + |
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Preference number: 6 (lower is better) Translates to: QSLAGLVDHTLD*GLKRLQHGHQT Trigger: AGTCTGATGCCCATGCTGGAGACGCTTAAGACCCAAGTCCAGAGTGTGATCGACAAGGCCAGCGAGACTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CCA 72 bp | TCGCCAAGTGTCTTCAGGTGGGTTTTGGCCCTGGTGTaGTACTCGTTCAAGGTAGGGTTGCTCTTGAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: SPSVFRWVLALV*YSFKVGLLLSS Trigger: TGAGCTCAAGAGCAACCCTACCTTGAACGAGTACCACACCAGGGCCAAAACCCACCTGAAGACACTTGGCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CCA 72 bp | AGAGTCTCGCTGGCCTTGTCGATCACACTCTGGACTTaGGTCTTAAGCGTCTCCAGCATGGGCATCAGACTA | + |
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Preference number: 6 (lower is better) Translates to: RVSLALSITLWT*VLSVSSMGIRL Trigger: TAGTCTGATGCCCATGCTGGAGACGCTTAAGACCCAAGTCCAGAGTGTGATCGACAAGGCCAGCGAGACTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034588.9 |
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| CDS CAA 90 bp | ATTAGCGAAATCCTTCACTTTGTCCCATTGGGACTGGGGTTCATCTaGCTGCCATACGTGCCAAGCCTGGCTCCCTGTCAGGAAGACCAG | + |
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Preference number: 6 (lower is better) Translates to: ISEILHFVPLGLGFI*LPYVPSLAPCQEDQ Trigger: CTGGTCTTCCTGACAGGGAGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGCTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CAA 90 bp | GACCGCATCCACATACACATTAGCGAAATCCTTCACTTTGTCCCATaGGGACTGGGGTTCATCTTGCTGCCATACGTGCCAAGCCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: DRIHIHISEILHFVP*GLGFILLPYVPSLA Trigger: AGCCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGCTAATGTGTATGTGGATGCGGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CCA 72 bp | ACATTAGCGAAATCCTTCACTTTGTCCCATTGGGACTaGGGTTCATCTTGCTGCCATACGTGCCAAGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: TLAKSFTLSHWD*GSSCCHTCQAW Trigger: CCAGGCTTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGCTAATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CAA 90 bp | CTGTCTTTGACCGCATCCACATACACATTAGCGAAATCCTTCACTTaGTCCCATTGGGACTGGGGTTCATCTTGCTGCCATACGTGCCAA | + |
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Preference number: 6 (lower is better) Translates to: LSLTASTYTLAKSFT*SHWDWGSSCCHTCQ Trigger: TTGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGCTAATGTGTATGTGGATGCGGTCAAAGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CAA 72 bp | CACATACACATTAGCGAAATCCTTCACTTTGTCCCATaGGGACTGGGGTTCATCTTGCTGCCATACGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: HIHISEILHFVP*GLGFILLPYVP Trigger: TGGCACGTATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGCTAATGTGTATGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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| CDS CAA 72 bp | ACCGCATCCACATACACATTAGCGAAATCCTTCACTTaGTCCCATTGGGACTGGGGTTCATCTTGCTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: TASTYTLAKSFT*SHWDWGSSCCH Trigger: ATGGCAGCAAGATGAACCCCAGTCCCAATGGGACAAAGTGAAGGATTTCGCTAATGTGTATGTGGATGCGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034588.9 ENSMUST00000132155.2 |
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