RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APMAP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033096

Ensembl transcript IDs: ENSMUST00000046399.7

Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACACAGGGACAGAGCTATATGTCCATGGCTCCTTCCAGACCTATGTaGCTGAGTGTGATGATTTCTGGCATGCACAGTGGGGGCAGCTGC +
Preference number: 1 (lower is better)
Translates to: TQGQSYMSMAPSRPM*LSVMISGMHSGGSC
Trigger: GCAGCTGCCCCCACTGTGCATGCCAGAAATCATCACACTCAGTCACATAGGTCTGGAAGGAGCCATGGACATATAGCTCTGTCCCTGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR CCA 90 bp GCATGGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTaGAGAAATACCAGAAGTCCAGGTATTCTCACACATCTCACACGG +
Preference number: 1 (lower is better)
Translates to: AWKEACRGWESTPFL*RNTRSPGILTHLTR
Trigger: CCGTGTGAGATGTGTGAGAATACCTGGACTTCTGGTATTTCTCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR CCA 90 bp AGGAGTCTTGAAAACCCTCTGGCATGGAAAGAGGCTTGTAGAGGGTaGGAGAGCACACCTTTTCTGTGGAGAAATACCAGAAGTCCAGGT +
Preference number: 1 (lower is better)
Translates to: RSLENPLAWKEACRG*ESTPFLWRNTRSPG
Trigger: ACCTGGACTTCTGGTATTTCTCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCAGAGGGTTTTCAAGACTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR GCA 90 bp GATAGAGCCAATGGCAATACAAAGGTCCCTGCACAGCTAATCCCCTaGTCTAATCATCAAACCCTGAGCCCTGTCACAGGTGTATTAAAT +
Preference number: 1 (lower is better)
Translates to: DRANGNTKVPAQLIP*SNHQTLSPVTGVLN
Trigger: ATTTAATACACCTGTGACAGGGCTCAGGGTTTGATGATTAGAGCAGGGGATTAGCTGTGCAGGGACCTTTGTATTGCCATTGGCTCTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR-3UTR TCA 90 bp CTCTGGCATGGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTGGAGACATCAAGTCCAGGTaGGAGGCACGTCTTGGGAGA +
Preference number: 2 (lower is better)
Translates to: LWHGKRLVEGGRAHLFCGDIKSR*EARLGR
Trigger: TCTCCCAAGACGTGCCTCTCACCTGGACTTGATGTC...TCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR-3UTR CCA 90 bp CCTCTGGCATGGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTGGGTGAGAGGCACGTCTTaGGAGAAAGTATGGGTAAGG +
Preference number: 2 (lower is better)
Translates to: PLAWKEACRGWESTPFLWVRGTS*EKVWVR
Trigger: CCTTACCCATACTTTCTCCCAAGACGTGCCTCTCAC...CCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR-3UTR CCA 90 bp AAAAGCATGACCCCCTTTAGAATGAAGATACAAGTGTCAGATAGAGCCAATGGCTTCTGGCATGCACAGTaGGGGCAGCTGCTGGGCTGG +
Preference number: 2 (lower is better)
Translates to: KSMTPFRMKIQVSDRANGFWHAQ*GQLLGW
Trigger: CCAGCCCAGCAGCTGCCCCCACTGTGCATGCCAGAA...GCCATTGGCTCTATCTGACACTTGTATCTTCATTCTAAAGGGGGTCATGCTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR-3UTR CCA 90 bp AATACCAGAAGTCCAGGTATTCTCACACATCTCACACGGCCCCTGAGAACAAGTGAGTGTGATGATTTCTaGCATGCACAGTGGGGGCAG +
Preference number: 2 (lower is better)
Translates to: NTRSPGILTHLTRPLRTSECDDF*HAQWGQ
Trigger: CTGCCCCCACTGTGCATGCCAGAAATCATCACACTC...ACTTGTTCTCAGGGGCCGTGTGAGATGTGTGAGAATACCTGGACTTCTGGTATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR CAA 90 bp AGAAAGAAACCCAATGAAATCCTCCTGGCCACTAAAACAGGAGTCTaGAAAACCCTCTGGCATGGAAAGAGGCTTGTAGAGGGTGGGAGA +
Preference number: 2 (lower is better)
Translates to: RKKPNEILLATKTGV*KTLWHGKRLVEGGR
Trigger: TCTCCCACCCTCTACAAGCCTCTTTCCATGCCAGAGGGTTTTCAAGACTCCTGTTTTAGTGGCCAGGAGGATTTCATTGGGTTTCTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR-3UTR CCA 90 bp TACAAACTCACTGGGTCACCCAATTCCAGTGGAGAAGGCAGTCAGAAAGAAACCAGAGCTATATGTCCATaGCTCCTTCCAGACCTATGT +
Preference number: 2 (lower is better)
Translates to: YKLTGSPNSSGEGSQKETRAICP*LLPDLC
Trigger: ACATAGGTCTGGAAGGAGCCATGGACATATAGCTCT...GGTTTCTTTCTGACTGCCTTCTCCACTGGAATTGGGTGACCCAGTGAGTTTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR-3UTR CCA 90 bp GGTACAAACTCACTGGGTCACCCAATTCCAGTGGAGAAGGCAGTCAGAAAGAAAAGCACACCTTTTCTGTaGAGAAATACCAGAAGTCCA +
Preference number: 2 (lower is better)
Translates to: GTNSLGHPIPVEKAVRKKSTPFL*RNTRSP
Trigger: TGGACTTCTGGTATTTCTCCACAGAAAAGGTGTGCT...TTTCTTTCTGACTGCCTTCTCCACTGGAATTGGGTGACCCAGTGAGTTTGTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR-3UTR CCA 90 bp TACAAACTCACTGGGTCACCCAATTCCAGTGGAGAAGGCAGTCAGAAAGAAACCTCTTGGGAGAAAGTATaGGTAAGGTTCATACCTTCT +
Preference number: 2 (lower is better)
Translates to: YKLTGSPNSSGEGSQKETSWEKV*VRFIPS
Trigger: AGAAGGTATGAACCTTACCCATACTTTCTCCCAAGA...GGTTTCTTTCTGACTGCCTTCTCCACTGGAATTGGGTGACCCAGTGAGTTTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR CCA 72 bp CAAGTCCAGGTGAGAGGCACGTCTTGGGAGAAAGTATaGGTAAGGTTCATACCTTCTCCAGGTTACAGCAGC +
Preference number: 3 (lower is better)
Translates to: QVQVRGTSWEKV*VRFIPSPGYSS
Trigger: GCTGCTGTAACCTGGAGAAGGTATGAACCTTACCCATACTTTCTCCCAAGACGTGCCTCTCACCTGGACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR TCA 72 bp CAGAGCTATATGTCCATGGCTCCTTCCAGACCTATGTaGCTGAGTGTGATGATTTCTGGCATGCACAGTGGG +
Preference number: 3 (lower is better)
Translates to: QSYMSMAPSRPM*LSVMISGMHSG
Trigger: CCCACTGTGCATGCCAGAAATCATCACACTCAGTCACATAGGTCTGGAAGGAGCCATGGACATATAGCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR GCA 72 bp AATGGCAATACAAAGGTCCCTGCACAGCTAATCCCCTaGTCTAATCATCAAACCCTGAGCCCTGTCACAGGT +
Preference number: 3 (lower is better)
Translates to: NGNTKVPAQLIP*SNHQTLSPVTG
Trigger: ACCTGTGACAGGGCTCAGGGTTTGATGATTAGAGCAGGGGATTAGCTGTGCAGGGACCTTTGTATTGCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR CCA 72 bp GAAAACCCTCTGGCATGGAAAGAGGCTTGTAGAGGGTaGGAGAGCACACCTTTTCTGTGGAGAAATACCAGA +
Preference number: 3 (lower is better)
Translates to: ENPLAWKEACRG*ESTPFLWRNTR
Trigger: TCTGGTATTTCTCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCAGAGGGTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR-3UTR CAA 90 bp CTGGCATGGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTGGAGAAGAACAAGTTTCAGCTaGAATAATCCCTGCCTCAAC +
Preference number: 3 (lower is better)
Translates to: LAWKEACRGWESTPFLWRRTSFS*NNPCLN
Trigger: GTTGAGGCAGGGATTATTCAAGCTGAAACTTGTTCT...TCTCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR CCA 72 bp GAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTaGAGAAATACCAGAAGTCCAGGTATTCTCACACAT +
Preference number: 3 (lower is better)
Translates to: EACRGWESTPFL*RNTRSPGILTH
Trigger: ATGTGTGAGAATACCTGGACTTCTGGTATTTCTCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR CCA 72 bp GTGCAGGTACAAACTCACTGGGTCACCCAATTCCAGTaGAGAAGGCAGTCAGAAAGAAACCCAATGAAATCC +
Preference number: 3 (lower is better)
Translates to: VQVQTHWVTQFQ*RRQSERNPMKS
Trigger: GGATTTCATTGGGTTTCTTTCTGACTGCCTTCTCCACTGGAATTGGGTGACCCAGTGAGTTTGTACCTGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR TCA 90 bp CATGGCTCCTTCCAGACCTATGTGACTGAGTGTGATGATTTCTGGCATGCACAGCCTGGCCATCGTCCGTaGCGACCTGCGGCCGCAGGG +
Preference number: 4 (lower is better)
Translates to: HGSFQTYVTECDDFWHAQPGHRP*RPAAAG
Trigger: CCCTGCGGCCGCAGGTCGTCACGGACGATGGCCAGG...CTGTGCATGCCAGAAATCATCACACTCAGTCACATAGGTCTGGAAGGAGCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR GCA 90 bp CATGGCTCCTTCCAGACCTATGTGACTGAGTGTGATGATTTCTGGCATGCACAGTCGTCCGTGACGACCTaGGGCCGCAGGGGCCGACGC +
Preference number: 4 (lower is better)
Translates to: HGSFQTYVTECDDFWHAQSSVTT*GRRGRR
Trigger: GCGTCGGCCCCTGCGGCCGCAGGTCGTCACGGACGA...CTGTGCATGCCAGAAATCATCACACTCAGTCACATAGGTCTGGAAGGAGCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR GCA 90 bp CTGGCATGGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTGGAGAAGTCCCATTGGGCCCTaGCCGGATGCCCAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: LAWKEACRGWESTPFLWRSPIGP*PDAQGS
Trigger: AGACCCCTGGGCATCCGGGCAGGGCCCAATGGGACT...TCTCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR GCA 90 bp CAGCTAATCCCCTGCTCTAATCATCAAACCCTGAGCCCTGTCACAGGTGTATTATGGGCCCTGCCCGGATaGCCAGGGGTCTCCCACAGG +
Preference number: 4 (lower is better)
Translates to: QLIPCSNHQTLSPVTGVLWALPG*PGVSHR
Trigger: CCTGTGGGAGACCCCTGGGCATCCGGGCAGGGCCCA...TAATACACCTGTGACAGGGCTCAGGGTTTGATGATTAGAGCAGGGGATTAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR TCA 90 bp CAGCTAATCCCCTGCTCTAATCATCAAACCCTGAGCCCTGTCACAGGTGTATTAAGGAACTGCCCTCCTTaGCCTCCGGGACCTGGCCAT +
Preference number: 4 (lower is better)
Translates to: QLIPCSNHQTLSPVTGVLRNCPP*PPGPGH
Trigger: ATGGCCAGGTCCCGGAGGTCAAGGAGGGCAGTTCCT...TAATACACCTGTGACAGGGCTCAGGGTTTGATGATTAGAGCAGGGGATTAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp GGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTGGAGAAATACCACTCCAAGTAGGGGAATaGCAAGGGACACAGCCAGCA +
Preference number: 4 (lower is better)
Translates to: GKRLVEGGRAHLFCGEIPLQVGE*QGTQPA
Trigger: TGCTGGCTGTGTCCCTTGCCATTCCCCTACTTGGAG...TGGTATTTCTCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp TGGGAGAAAGTATGGGTAAGGTTCATACCTTCTCCAGGTTACAGCAGCTACTCCCAAAAAGAGTCCCATTaGGCCCTGCCCGGATGCCCA +
Preference number: 4 (lower is better)
Translates to: WEKVWVRFIPSPGYSSYSQKESH*ALPGCP
Trigger: TGGGCATCCGGGCAGGGCCCAATGGGACTCTTTTTG...GGAGTAGCTGCTGTAACCTGGAGAAGGTATGAACCTTACCCATACTTTCTCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR GCA 90 bp CATGGCTCCTTCCAGACCTATGTGACTGAGTGTGATGATTTCTGGCATGCACAGTGTCCATCAGGATCATaGAGGCTTCTCCGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: HGSFQTYVTECDDFWHAQCPSGS*RLLRKA
Trigger: TGCCTTCCGGAGAAGCCTGCATGATCCTGATGGACA...CTGTGCATGCCAGAAATCATCACACTCAGTCACATAGGTCTGGAAGGAGCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR TCA 90 bp GGTACAAACTCACTGGGTCACCCAATTCCAGTGGAGAAGGCAGTCAGAAAGAAACCTCACTCACATAGGTaGCCACCTGTCCATCAGGAT +
Preference number: 4 (lower is better)
Translates to: GTNSLGHPIPVEKAVRKKPHSHR*PPVHQD
Trigger: ATCCTGATGGACAGGTGGTCACCTATGTGAGTGAGG...TTTCTTTCTGACTGCCTTCTCCACTGGAATTGGGTGACCCAGTGAGTTTGTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR GCA 90 bp ATCCTCCTGGCCACTAAAACAGGAGTCTTGAAAACCCTCTGGCATGGAAAGAGGCTCCACAAACATATCTaGCCCTCCTTTCATCAGGCC +
Preference number: 4 (lower is better)
Translates to: ILLATKTGVLKTLWHGKRLHKHI*PSFHQA
Trigger: GGCCTGATGAAAGGAGGGGCAGATATGTTTGTGGAG...CCTCTTTCCATGCCAGAGGGTTTTCAAGACTCCTGTTTTAGTGGCCAGGAGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR TCA 90 bp CCTCTGGCATGGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTGGTTCACTGAACGTTTCTaGGGATTTACTTCGAACAGT +
Preference number: 4 (lower is better)
Translates to: PLAWKEACRGWESTPFLWFTERF*GFTSNS
Trigger: ACTGTTCGAAGTAAATCCTCAGAAACGTTCAGTGAA...CCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp AATACCAGAAGTCCAGGTATTCTCACACATCTCACACGGCCCCTGAGAACAAGTTCTTCTTGCCCTCAATaGGCGTCTCAGAGGATAGCA +
Preference number: 4 (lower is better)
Translates to: NTRSPGILTHLTRPLRTSSSCPQ*ASQRIA
Trigger: TGCTATCCTCTGAGACGCCCATTGAGGGCAAGAAGA...ACTTGTTCTCAGGGGCCGTGTGAGATGTGTGAGAATACCTGGACTTCTGGTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp GTCTTCCCCATAGCAGATACACTATTTCCCTCTAAAAATGACATCAAGTCCAGGGGCGCCCATCATCAGTaGCCTCCATCACCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: VFPIADTLFPSKNDIKSRGAHHQ*PPSPEA
Trigger: TGCTTCTGGTGATGGAGGCCACTGATGATGGGCGCC...CCTGGACTTGATGTCATTTTTAGAGGGAAATAGTGTATCTGCTATGGGGAAGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR CAA 72 bp CCCAATGAAATCCTCCTGGCCACTAAAACAGGAGTCTaGAAAACCCTCTGGCATGGAAAGAGGCTTGTAGAG +
Preference number: 4 (lower is better)
Translates to: PNEILLATKTGV*KTLWHGKRLVE
Trigger: CTCTACAAGCCTCTTTCCATGCCAGAGGGTTTTCAAGACTCCTGTTTTAGTGGCCAGGAGGATTTCATTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp TGGGAGAAAGTATGGGTAAGGTTCATACCTTCTCCAGGTTACAGCAGCTACTCCAACTCTGAGGATCTATaGGGGACTCCAACAGCATCA +
Preference number: 4 (lower is better)
Translates to: WEKVWVRFIPSPGYSSYSNSEDL*GTPTAS
Trigger: TGATGCTGTTGGAGTCCCCCATAGATCCTCAGAGTT...GGAGTAGCTGCTGTAACCTGGAGAAGGTATGAACCTTACCCATACTTTCTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp TGGCATGGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTGGAGAAAACCGAACCGAGCGATaGTCTCTATTTCTCCATTTT +
Preference number: 4 (lower is better)
Translates to: WHGKRLVEGGRAHLFCGENRTER*SLFLHF
Trigger: AAAATGGAGAAATAGAGACCATCGCTCGGTTCGGTT...TTCTCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR GCA 90 bp CATGGCTCCTTCCAGACCTATGTGACTGAGTGTGATGATTTCTGGCATGCACAGAATAGCCTTTCTGCTTaGCGCAACTTCGTATTTGGA +
Preference number: 4 (lower is better)
Translates to: HGSFQTYVTECDDFWHAQNSLSA*RNFVFG
Trigger: TCCAAATACGAAGTTGCGGCAAGCAGAAAGGCTATT...CTGTGCATGCCAGAAATCATCACACTCAGTCACATAGGTCTGGAAGGAGCCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
3UTR CAA 72 bp ACACATCTCACACGGCCCCTGAGAACAAGTTTCAGCTaGAATAATCCCTGCCTCAACACATGCATTACCACT +
Preference number: 4 (lower is better)
Translates to: THLTRPLRTSFS*NNPCLNTCITT
Trigger: AGTGGTAATGCATGTGTTGAGGCAGGGATTATTCAAGCTGAAACTTGTTCTCAGGGGCCGTGTGAGATGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR TCA 90 bp CAGCTAATCCCCTGCTCTAATCATCAAACCCTGAGCCCTGTCACAGGTGTATTATGCTGCTGGAATCCGTaGAATAAATCTTCCTTCCAT +
Preference number: 4 (lower is better)
Translates to: QLIPCSNHQTLSPVTGVLCCWNP*NKSSFH
Trigger: ATGGAAGGAAGATTTATTTCACGGATTCCAGCAGCA...TAATACACCTGTGACAGGGCTCAGGGTTTGATGATTAGAGCAGGGGATTAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp AATACCAGAAGTCCAGGTATTCTCACACATCTCACACGGCCCCTGAGAACAAGTCCGCAACTTCGTATTTaGATGCAGAACACCAAACAT +
Preference number: 4 (lower is better)
Translates to: NTRSPGILTHLTRPLRTSPQLRI*MQNTKH
Trigger: ATGTTTGGTGTTCTGCATCCAAATACGAAGTTGCGG...ACTTGTTCTCAGGGGCCGTGTGAGATGTGTGAGAATACCTGGACTTCTGGTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp TGGCATGGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTGGAGAATCTGGTCCACTAAGTTaGTTTTCAAATAGCCTTTCT +
Preference number: 4 (lower is better)
Translates to: WHGKRLVEGGRAHLFCGESGPLS*FSNSLS
Trigger: AGAAAGGCTATTTGAAAACCAACTTAGTGGACCAGA...TTCTCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp CAGGTTACAGCAGCTACTCCCACACTTCCAAGGACTAGCAGGAACACAGGGACAATTTACTATGGATTCTaGTCCACTAAGTTGGTTTTC +
Preference number: 4 (lower is better)
Translates to: QVTAATPTLPRTSRNTGTIYYGF*STKLVF
Trigger: GAAAACCAACTTAGTGGACCAGAATCCATAGTAAAT...TGTCCCTGTGTTCCTGCTAGTCCTTGGAAGTGTGGGAGTAGCTGCTGTAACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR TCA 90 bp ACACATCTCACACGGCCCCTGAGAACAAGTTTCAGCTTGAATAATCCCTGCCTCTTCATCACTGTCTCCTaGCTGAACATCTTAAAAATC +
Preference number: 4 (lower is better)
Translates to: THLTRPLRTSFSLNNPCLFITVS*LNILKI
Trigger: GATTTTTAAGATGTTCAGTCAGGAGACAGTGATGAA...GAGGCAGGGATTATTCAAGCTGAAACTTGTTCTCAGGGGCCGTGTGAGATGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CCA 90 bp GTCTTCCCCATAGCAGATACACTATTTCCCTCTAAAAATGACATCAAGTCCAGGGACCAGGCTATATCGTaGCACAAACTTCATCACTGT +
Preference number: 4 (lower is better)
Translates to: VFPIADTLFPSKNDIKSRDQAIS*HKLHHC
Trigger: ACAGTGATGAAGTTTGTGCCACGATATAGCCTGGTC...CCTGGACTTGATGTCATTTTTAGAGGGAAATAGTGTATCTGCTATGGGGAAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 90 bp CTGCCCTCCTTGACCTCCGGGACCTGGCCATCGTCCGTGACGACCTaGGGCCGCAGGGGCCGACGCTGCCGCAGCCCGTCCGCTTCGCTC +
Preference number: 5 (lower is better)
Translates to: LPSLTSGTWPSSVTT*GRRGRRCRSPSASL
Trigger: GAGCGAAGCGGACGGGCTGCGGCAGCGTCGGCCCCTGCGGCCGCAGGTCGTCACGGACGATGGCCAGGTCCCGGAGGTCAAGGAGGGCAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CCA 90 bp AAGACTCTGCCACTAAAGGAACTGCCCTCCTTGACCTCCGGGACCTaGCCATCGTCCGTGACGACCTGCGGCCGCAGGGGCCGACGCTGC +
Preference number: 5 (lower is better)
Translates to: KTLPLKELPSLTSGT*PSSVTTCGRRGRRC
Trigger: GCAGCGTCGGCCCCTGCGGCCGCAGGTCGTCACGGACGATGGCCAGGTCCCGGAGGTCAAGGAGGGCAGTTCCTTTAGTGGCAGAGTCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 90 bp CAGTCCCTTGTACGCATCAACCACAAAAAGAGTCCCATTGGGCCCTaGCCGGATGCCCAGGGGTCTCCCACAGGTAGGTTCATCATCTCG +
Preference number: 5 (lower is better)
Translates to: QSLVRINHKKSPIGP*PDAQGSPTGRFIIS
Trigger: CGAGATGATGAACCTACCTGTGGGAGACCCCTGGGCATCCGGGCAGGGCCCAATGGGACTCTTTTTGTGGTTGATGCGTACAAGGGACTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CAA 90 bp ATCCTCCTGGCCACTAAAACAGGAGTCTTGAAAACCCTCTGGCATGGAAAGAGGACAAAAAGAGTCCCATaGGGCCCTGCCCGGATGCCC +
Preference number: 5 (lower is better)
Translates to: ILLATKTGVLKTLWHGKRTKRVP*GPARMP
Trigger: GGGCATCCGGGCAGGGCCCAATGGGACTCTTTTTGT...CCTCTTTCCATGCCAGAGGGTTTTCAAGACTCCTGTTTTAGTGGCCAGGAGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CAA 90 bp CTCTGGCATGGAAAGAGGCTTGTAGAGGGTGGGAGAGCACACCTTTTCTGTGGACTGCTAGGCCGGATATaGTCAGGAAATCCAGGCATG +
Preference number: 5 (lower is better)
Translates to: LWHGKRLVEGGRAHLFCGLLGRI*SGNPGM
Trigger: CATGCCTGGATTTCCTGACAATATCCGGCCTAGCAG...TCCACAGAAAAGGTGTGCTCTCCCACCCTCTACAAGCCTCTTTCCATGCCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS TCA 90 bp GTCCATCAGGATCATGCAGGCTTCTCCGGAAGGCACCACTGTCACTaGCTTCTAGGACCAGGCTATATCGTGGCACAAACTTCATCACTG +
Preference number: 5 (lower is better)
Translates to: VHQDHAGFSGRHHCH*LLGPGYIVAQTSSL
Trigger: CAGTGATGAAGTTTGTGCCACGATATAGCCTGGTCCTAGAAGTCAGTGACAGTGGTGCCTTCCGGAGAAGCCTGCATGATCCTGATGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CCA 90 bp CTTCTTTCGTCACAGTATCATACTCTAACAGGCGCCCATCATCAGTaGCCTCCATCACCAGAAGCAGGTAGTCTCGTCTCTGCCACTTGC +
Preference number: 5 (lower is better)
Translates to: LLSSQYHTLTGAHHQ*PPSPEAGSLVSATC
Trigger: GCAAGTGGCAGAGACGAGACTACCTGCTTCTGGTGATGGAGGCCACTGATGATGGGCGCCTGTTAGAGTATGATACTGTGACGAAAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CAA 90 bp CAGCTAATCCCCTGCTCTAATCATCAAACCCTGAGCCCTGTCACAGGTGTATTAACAAAGGACATCTTCTaGCCCTCAATGGGCGTCTCA +
Preference number: 5 (lower is better)
Translates to: QLIPCSNHQTLSPVTGVLTKDIF*PSMGVS
Trigger: TGAGACGCCCATTGAGGGCAAGAAGATGTCCTTTGT...TAATACACCTGTGACAGGGCTCAGGGTTTGATGATTAGAGCAGGGGATTAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 90 bp CCGGATATTGTCAGGAAATCCAGGCATGTTCTCCACAAACATATCTaGCCCTCCTTTCATCAGGCCAGACACATAGACTCTTCGTATCCT +
Preference number: 5 (lower is better)
Translates to: PDIVRKSRHVLHKHI*PSFHQARHIDSSYP
Trigger: AGGATACGAAGAGTCTATGTGTCTGGCCTGATGAAAGGAGGGGCAGATATGTTTGTGGAGAACATGCCTGGATTTCCTGACAATATCCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS-3UTR CAA 90 bp TACAAACTCACTGGGTCACCCAATTCCAGTGGAGAAGGCAGTCAGAAAGAAACCGCCGCAACTTCGTATTaGGATGCAGAACACCAAACA +
Preference number: 5 (lower is better)
Translates to: YKLTGSPNSSGEGSQKETAATSY*DAEHQT
Trigger: TGTTTGGTGTTCTGCATCCAAATACGAAGTTGCGGC...GGTTTCTTTCTGACTGCCTTCTCCACTGGAATTGGGTGACCCAGTGAGTTTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS TCA 90 bp ATAGTTGTCTCTGCCACTAGGACAAAGTCTTCCTCAGGAGAGAGCTaGACTCCATTAGGGAACTGCAACTGGTCCAACAAAACCTTCACT +
Preference number: 5 (lower is better)
Translates to: IVVSATRTKSSSGES*TPLGNCNWSNKTFT
Trigger: AGTGAAGGTTTTGTTGGACCAGTTGCAGTTCCCTAATGGAGTTCAGCTCTCTCCTGAGGAAGACTTTGTCCTAGTGGCAGAGACAACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 90 bp TGGTTTTCAAATAGCCTTTCTGCTTGCCGCAACTTCGTATTTGGATaGAGAACACCAAACATGAAAGGGGGTTCTTTGAAGCTGAAACTC +
Preference number: 5 (lower is better)
Translates to: WFSNSLSACRNFVFG*RTPNMKGGSLKLKL
Trigger: GAGTTTCAGCTTCAAAGAACCCCCTTTCATGTTTGGTGTTCTGCATCCAAATACGAAGTTGCGGCAAGCAGAAAGGCTATTTGAAAACCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 90 bp ATGGATTCTGGTCCACTAAGTTGGTTTTCAAATAGCCTTTCTGCTTaGCGCAACTTCGTATTTGGATGCAGAACACCAAACATGAAAGGG +
Preference number: 5 (lower is better)
Translates to: MDSGPLSWFSNSLSA*RNFVFGCRTPNMKG
Trigger: CCCTTTCATGTTTGGTGTTCTGCATCCAAATACGAAGTTGCGGCAAGCAGAAAGGCTATTTGAAAACCAACTTAGTGGACCAGAATCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CCA 90 bp AACAGCACATCCCCAATATTTACTATGGATTCTGGTCCACTAAGTTaGTTTTCAAATAGCCTTTCTGCTTGCCGCAACTTCGTATTTGGA +
Preference number: 5 (lower is better)
Translates to: NSTSPIFTMDSGPLS*FSNSLSACRNFVFG
Trigger: TCCAAATACGAAGTTGCGGCAAGCAGAAAGGCTATTTGAAAACCAACTTAGTGGACCAGAATCCATAGTAAATATTGGGGATGTGCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CCA 72 bp GTCCCTTGTACGCATCAACCACAAAAAGAGTCCCATTaGGCCCTGCCCGGATGCCCAGGGGTCTCCCACAGG +
Preference number: 6 (lower is better)
Translates to: VPCTHQPQKESH*ALPGCPGVSHR
Trigger: CCTGTGGGAGACCCCTGGGCATCCGGGCAGGGCCCAATGGGACTCTTTTTGTGGTTGATGCGTACAAGGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CAA 90 bp AAGAAGGTCATTCTGAAGACTCTGCCACTAAAGGAACTGCCCTCCTaGACCTCCGGGACCTGGCCATCGTCCGTGACGACCTGCGGCCGC +
Preference number: 6 (lower is better)
Translates to: KKVILKTLPLKELPS*TSGTWPSSVTTCGR
Trigger: GCGGCCGCAGGTCGTCACGGACGATGGCCAGGTCCCGGAGGTCAAGGAGGGCAGTTCCTTTAGTGGCAGAGTCTTCAGAATGACCTTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 72 bp GTACGCATCAACCACAAAAAGAGTCCCATTGGGCCCTaGCCGGATGCCCAGGGGTCTCCCACAGGTAGGTTC +
Preference number: 6 (lower is better)
Translates to: VRINHKKSPIGP*PDAQGSPTGRF
Trigger: GAACCTACCTGTGGGAGACCCCTGGGCATCCGGGCAGGGCCCAATGGGACTCTTTTTGTGGTTGATGCGTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CAA 90 bp ACTTCGAACAGTCCCTTGTACGCATCAACCACAAAAAGAGTCCCATaGGGCCCTGCCCGGATGCCCAGGGGTCTCCCACAGGTAGGTTCA +
Preference number: 6 (lower is better)
Translates to: TSNSPLYASTTKRVP*GPARMPRGLPQVGS
Trigger: TGAACCTACCTGTGGGAGACCCCTGGGCATCCGGGCAGGGCCCAATGGGACTCTTTTTGTGGTTGATGCGTACAAGGGACTGTTCGAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CAA 72 bp AGGGGTCTCCCACAGGTAGGTTCATCATCTCGGGTTTaGCAAGGGCCTGAACCGAACCGAGCGATGGTCTCT +
Preference number: 6 (lower is better)
Translates to: RGLPQVGSSSRV*QGPEPNRAMVS
Trigger: AGAGACCATCGCTCGGTTCGGTTCAGGCCCTTGCAAAACCCGAGATGATGAACCTACCTGTGGGAGACCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 72 bp ATCCAACATGGAAAACCCAGGGTTAGCACGAATGGTTaGAGCAGCAACCCAGTATCCGCCAGAGCTGCTAGG +
Preference number: 6 (lower is better)
Translates to: IQHGKPRVSTNG*SSNPVSARAAR
Trigger: CCTAGCAGCTCTGGCGGATACTGGGTTGCTGCTGCAACCATTCGTGCTAACCCTGGGTTTTCCATGTTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CCA 72 bp AACTCTGAGGATCTATGGGGGACTCCAACAGCATCATaGCTCCAAGTAGGGGAATGGCAAGGGACACAGCCA +
Preference number: 6 (lower is better)
Translates to: NSEDLWGTPTAS*LQVGEWQGTQP
Trigger: TGGCTGTGTCCCTTGCCATTCCCCTACTTGGAGCCATGATGCTGTTGGAGTCCCCCATAGATCCTCAGAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CAA 90 bp GTTGCAGCAGCAACCCAGTATCCGCCAGAGCTGCTAGGCCGGATATaGTCAGGAAATCCAGGCATGTTCTCCACAAACATATCTGCCCCT +
Preference number: 6 (lower is better)
Translates to: VAAATQYPPELLGRI*SGNPGMFSTNISAP
Trigger: AGGGGCAGATATGTTTGTGGAGAACATGCCTGGATTTCCTGACAATATCCGGCCTAGCAGCTCTGGCGGATACTGGGTTGCTGCTGCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS TCA 72 bp GATCATGCAGGCTTCTCCGGAAGGCACCACTGTCACTaGCTTCTAGGACCAGGCTATATCGTGGCACAAACT +
Preference number: 6 (lower is better)
Translates to: DHAGFSGRHHCH*LLGPGYIVAQT
Trigger: AGTTTGTGCCACGATATAGCCTGGTCCTAGAAGTCAGTGACAGTGGTGCCTTCCGGAGAAGCCTGCATGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CCA 72 bp TCACAGTATCATACTCTAACAGGCGCCCATCATCAGTaGCCTCCATCACCAGAAGCAGGTAGTCTCGTCTCT +
Preference number: 6 (lower is better)
Translates to: SQYHTLTGAHHQ*PPSPEAGSLVS
Trigger: AGAGACGAGACTACCTGCTTCTGGTGATGGAGGCCACTGATGATGGGCGCCTGTTAGAGTATGATACTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CAA 72 bp GCAACCCAGTATCCGCCAGAGCTGCTAGGCCGGATATaGTCAGGAAATCCAGGCATGTTCTCCACAAACATA +
Preference number: 6 (lower is better)
Translates to: ATQYPPELLGRI*SGNPGMFSTNI
Trigger: TATGTTTGTGGAGAACATGCCTGGATTTCCTGACAATATCCGGCCTAGCAGCTCTGGCGGATACTGGGTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS TCA 72 bp ACAGGTAGGTTCATCATCTCGGGTTTTGCAAGGGCCTaGACCGAACCGAGCGATGGTCTCTATTTCTCCATT +
Preference number: 6 (lower is better)
Translates to: TGRFIISGFARA*TEPSDGLYFSI
Trigger: AATGGAGAAATAGAGACCATCGCTCGGTTCGGTTCAGGCCCTTGCAAAACCCGAGATGATGAACCTACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CAA 72 bp CGAGTAACAGTGAGGTCATTCACAAAGGACATCTTCTaGCCCTCAATGGGCGTCTCAGAGGATAGCAGCAGT +
Preference number: 6 (lower is better)
Translates to: RVTVRSFTKDIF*PSMGVSEDSSS
Trigger: ACTGCTGCTATCCTCTGAGACGCCCATTGAGGGCAAGAAGATGTCCTTTGTGAATGACCTCACTGTTACTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CAA 90 bp CTTCCATCCCGAGTAACAGTGAGGTCATTCACAAAGGACATCTTCTaGCCCTCAATGGGCGTCTCAGAGGATAGCAGCAGTTTCACTGAA +
Preference number: 6 (lower is better)
Translates to: LPSRVTVRSFTKDIF*PSMGVSEDSSSFTE
Trigger: TTCAGTGAAACTGCTGCTATCCTCTGAGACGCCCATTGAGGGCAAGAAGATGTCCTTTGTGAATGACCTCACTGTTACTCGGGATGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 72 bp GTCAGGAAATCCAGGCATGTTCTCCACAAACATATCTaGCCCTCCTTTCATCAGGCCAGACACATAGACTCT +
Preference number: 6 (lower is better)
Translates to: VRKSRHVLHKHI*PSFHQARHIDS
Trigger: AGAGTCTATGTGTCTGGCCTGATGAAAGGAGGGGCAGATATGTTTGTGGAGAACATGCCTGGATTTCCTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 72 bp AATAGCCTTTCTGCTTGCCGCAACTTCGTATTTGGATaGAGAACACCAAACATGAAAGGGGGTTCTTTGAAG +
Preference number: 6 (lower is better)
Translates to: NSLSACRNFVFG*RTPNMKGGSLK
Trigger: CTTCAAAGAACCCCCTTTCATGTTTGGTGTTCTGCATCCAAATACGAAGTTGCGGCAAGCAGAAAGGCTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS GCA 72 bp GGTCCACTAAGTTGGTTTTCAAATAGCCTTTCTGCTTaGCGCAACTTCGTATTTGGATGCAGAACACCAAAC +
Preference number: 6 (lower is better)
Translates to: GPLSWFSNSLSA*RNFVFGCRTPN
Trigger: GTTTGGTGTTCTGCATCCAAATACGAAGTTGCGGCAAGCAGAAAGGCTATTTGAAAACCAACTTAGTGGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7
CDS CCA 72 bp TCCCCAATATTTACTATGGATTCTGGTCCACTAAGTTaGTTTTCAAATAGCCTTTCTGCTTGCCGCAACTTC +
Preference number: 6 (lower is better)
Translates to: SPIFTMDSGPLS*FSNSLSACRNF
Trigger: GAAGTTGCGGCAAGCAGAAAGGCTATTTGAAAACCAACTTAGTGGACCAGAATCCATAGTAAATATTGGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046399.7