RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APLP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031996

Ensembl transcript IDs: ENSMUST00000072634.15, ENSMUST00000079758.9, ENSMUST00000213254.2, ENSMUST00000217641.2

Found 327 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACCCAAACACCCAGCACTGGACACACGAGGCTTCTGCGGAGACTATaGCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTC +
Preference number: 1 (lower is better)
Translates to: TQTPSTGHTRLLRRL*LKQSVTAYNVLQLL
Trigger: GAGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGCAGAAGCCTCGTGTGTCCAGTGCTGGGTGTTTGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR TCA 90 bp GTAGTACTTTATAGTCTTAACAATCCAGGAGAGCAGGATGTAGGATaGGGCCTTCTGGCACCACTGGTGGTCAGCAGTCAAGCACAAACG +
Preference number: 1 (lower is better)
Translates to: VVLYSLNNPGEQDVG*GLLAPLVVSSQAQT
Trigger: CGTTTGTGCTTGACTGCTGACCACCAGTGGTGCCAGAAGGCCTCATCCTACATCCTGCTCTCCTGGATTGTTAAGACTATAAAGTACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR TCA 90 bp TGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTaGATCTATGTTTGCATCTGGCTAGTTCAAGGTGCCTTAGCCCTG +
Preference number: 1 (lower is better)
Translates to: WASCCGRTGFERKAQ*IYVCIWLVQGALAL
Trigger: CAGGGCTAAGGCACCTTGAACTAGCCAGATGCAAACATAGATTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR TCA 90 bp TGGATAGGAAAAGGCTACCGTAAACAACTGTGGAAGAACACAGACTaGCTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAA +
Preference number: 1 (lower is better)
Translates to: WIGKGYRKQLWKNTD*LWASCCGRTGFERK
Trigger: TTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTCAGTCTGTGTTCTTCCACAGTTGTTTACGGTAGCCTTTTCCTATCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR TCA 90 bp GCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATaGAGGAAACAAACACTTTCAAACGTTTCCACAGTGTCTACAGAT +
Preference number: 1 (lower is better)
Translates to: AVSVNSSYTAFYRFI*RKQTLSNVSTVSTD
Trigger: ATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTTTCCTTCATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR GCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATaGACAACCCAGAACATTGTCCTTTCATATGATGAAGCCTCCCGT +
Preference number: 1 (lower is better)
Translates to: QTLSNVSTVSTDPIS*TTQNIVLSYDEASR
Trigger: ACGGGAGGCTTCATCATATGAAAGGACAATGTTCTGGGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCGTCAAGCACAAACGCTaGGCCTCTTCCAGCCCACCT +
Preference number: 2 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAVKHKR*ASSSPP
Trigger: AGGTGGGCTGGAAGAGGCTCAGCGTTTGTGCTTGAC...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCAGCGGTGGAGGTGAGTaGGGTACAAAGGCAGGCAGA +
Preference number: 2 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSASGGGE*GTKAGR
Trigger: TCTGCCTGCCTTTGTACCTCACTCACCTCCACCGCT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAGAGCAGGATGTAGGATaGGGCCTTCTGGCACCACTG +
Preference number: 2 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLEQDVG*GLLAPL
Trigger: CAGTGGTGCCAGAAGGCCTCATCCTACATCCTGCTC...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTGAAAGGAAAGCACAGTaGATCTATGTTTGCATCTGG +
Preference number: 2 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGERKAQ*IYVCIW
Trigger: CCAGATGCAAACATAGATTCACTGTGCTTTCCTTTC...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR GCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTACTGGCTAGTTCAAGGTaGCTTAGCCCTGCTTGGGGA +
Preference number: 2 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLLASSR*LSPAWG
Trigger: TCCCCAAGCAGGGCTAAGGCACCTTGAACTAGCCAG...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCATCCAATGAGGAGGTaGGTGCACGCTTGGATACAC +
Preference number: 2 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAHPMRR*VHAWIH
Trigger: GTGTATCCAAGCGTGCACCCACCTCCTCATTGGATG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGGTCAAGCACAAACGCTaGGCCTCTTCCAGCCCACCT +
Preference number: 2 (lower is better)
Translates to: AKGCERELQLHSILQVHMVKHKR*ASSSPP
Trigger: AGGTGGGCTGGAAGAGGCTCAGCGTTTGTGCTTGAC...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTGAGCAGGATGTAGGATaGGGCCTTCTGGCACCACTG +
Preference number: 2 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPEQDVG*GLLAPL
Trigger: CAGTGGTGCCAGAAGGCCTCATCCTACATCCTGCTC...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGGCCATCAGAGGGGCTaGAGAGCGGTGGAGGTGAGT +
Preference number: 2 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTGHQRG*RAVEVS
Trigger: ACTCACCTCCACCGCTCTCCAGCCCCTCTGATGGCC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR GCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACTGGCTAGTTCAAGGTaGCTTAGCCCTGCTTGGGGA +
Preference number: 2 (lower is better)
Translates to: DYGLVAVEELDLKGKHSELASSR*LSPAWG
Trigger: TCCCCAAGCAGGGCTAAGGCACCTTGAACTAGCCAG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGTCAAGCACAAACGCTaGGCCTCTTCCAGCCCACCT +
Preference number: 2 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTVKHKR*ASSSPP
Trigger: AGGTGGGCTGGAAGAGGCTCAGCGTTTGTGCTTGAC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR CAA 90 bp TTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCCAGAACATaGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCC +
Preference number: 2 (lower is better)
Translates to: FPQCLQIQFHAQPRT*SFHMMKPPVNSPGS
Trigger: GGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGTTCTGGGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTATGGAAGAACTGGATTTaGAAGGAAAGCACAGTGAAT +
Preference number: 2 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLWKNWI*KESTVN
Trigger: ATTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCA...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR GCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCAAAGCAGTCAGTAACTaGATACAATGTACTTCAGCT +
Preference number: 2 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAKAVSN*IQCTSA
Trigger: AGCTGAAGTACATTGTATGCAGTTACTGACTGCTTT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGCATTTCTCAGCAACCTaGAAAGGGAAATACTGCCTT +
Preference number: 2 (lower is better)
Translates to: AKGCERELQLHSILQVHMHFSAT*KGKYCL
Trigger: AAGGCAGTATTTCCCTTTTCAGGTTGCTGAGAAATG...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTCATTTCTCAGCAACCTaGAAAGGGAAATACTGCCTT +
Preference number: 2 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPHFSAT*KGKYCL
Trigger: AAGGCAGTATTTCCCTTTTCAGGTTGCTGAGAAATG...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR GCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAAAAGCAGTCAGTAACTaGATACAATGTACTTCAGCT +
Preference number: 2 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLKAVSN*IQCTSA
Trigger: AGCTGAAGTACATTGTATGCAGTTACTGACTGCTTT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR GCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGACAGATCCAATTTCATaGACAACCCAGAACATTGTC +
Preference number: 2 (lower is better)
Translates to: AKGCERELQLHSILQVHMTDPIS*TTQNIV
Trigger: GACAATGTTCTGGGTTGTGCATGAAATTGGATCTGT...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACATCCAATGAGGAGGTaGGTGCACGCTTGGATACAC +
Preference number: 2 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQHPMRR*VHAWIH
Trigger: GTGTATCCAAGCGTGCACCCACCTCCTCATTGGATG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGCAGCCATGTTTATTATaGTATTCTCTGAGTGGCCAT +
Preference number: 2 (lower is better)
Translates to: AKGCERELQLHSILQVHMQPCLL*YSLSGH
Trigger: ATGGCCACTCAGAGAATACCATAATAAACATGGCTG...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGAAAGGAAAGCACAGTaGATCTATGTTTGCATCTGG +
Preference number: 2 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTERKAQ*IYVCIW
Trigger: CCAGATGCAAACATAGATTCACTGTGCTTTCCTTTC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACATTTCTCAGCAACCTaGAAAGGGAAATACTGCCTT +
Preference number: 2 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQHFSAT*KGKYCL
Trigger: AAGGCAGTATTTCCCTTTTCAGGTTGCTGAGAAATG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR TCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAATGGAAGAACTGGATTTaGAAGGAAAGCACAGTGAAT +
Preference number: 2 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQWKNWI*KESTVN
Trigger: ATTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCA...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACAGCCATGTTTATTATaGTATTCTCTGAGTGGCCAT +
Preference number: 2 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQQPCLL*YSLSGH
Trigger: ATGGCCACTCAGAGAATACCATAATAAACATGGCTG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR GCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAAAAGCAGTCAGTAACTaGATACAATGTACTTCAGCT +
Preference number: 2 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQKAVSN*IQCTSA
Trigger: AGCTGAAGTACATTGTATGCAGTTACTGACTGCTTT...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR CCA 72 bp GGACGGCTGGTACAGAAGCACCCAAACACCCAGCACTaGACACACGAGGCTTCTGCGGAGACTATGCCTAAA +
Preference number: 3 (lower is better)
Translates to: GRLVQKHPNTQH*THEASAETMPK
Trigger: TTTAGGCATAGTCTCCGCAGAAGCCTCGTGTGTCCAGTGCTGGGTGTTTGGGTGCTTCTGTACCAGCCGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR CCA 72 bp TTGCATCTGGCTAGTTCAAGGTGCCTTAGCCCTGCTTaGGGACGGCTGGTACAGAAGCACCCAAACACCCAG +
Preference number: 3 (lower is better)
Translates to: LHLASSRCLSPA*GRLVQKHPNTQ
Trigger: CTGGGTGTTTGGGTGCTTCTGTACCAGCCGTCCCCAAGCAGGGCTAAGGCACCTTGAACTAGCCAGATGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR CCA 72 bp GGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTaGGTGCACGCTTGGATACACTTGGTAAGGGAAGTG +
Preference number: 3 (lower is better)
Translates to: GSVHGGSHPMRR*VHAWIHLVREV
Trigger: CACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR CCA 72 bp GGAGGGAGCCATCCAATGAGGAGGTGGGTGCACGCTTaGATACACTTGGTAAGGGAAGTGGATAGGAAAAGG +
Preference number: 3 (lower is better)
Translates to: GGSHPMRRWVHA*IHLVREVDRKR
Trigger: CCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCTCCTCATTGGATGGCTCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR TCA 72 bp TATAGTCTTAACAATCCAGGAGAGCAGGATGTAGGATaGGGCCTTCTGGCACCACTGGTGGTCAGCAGTCAA +
Preference number: 3 (lower is better)
Translates to: YSLNNPGEQDVG*GLLAPLVVSSQ
Trigger: TTGACTGCTGACCACCAGTGGTGCCAGAAGGCCTCATCCTACATCCTGCTCTCCTGGATTGTTAAGACTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR GCA 72 bp CCCAGCACTGGACACACGAGGCTTCTGCGGAGACTATaGCTAAAGCAGTCAGTAACTGCATACAATGTACTT +
Preference number: 3 (lower is better)
Translates to: PSTGHTRLLRRL*LKQSVTAYNVL
Trigger: AAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGCAGAAGCCTCGTGTGTCCAGTGCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR CAA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCGTGGAAGAACTGGATTaGAAAGGAAAGCACAGTGAA +
Preference number: 3 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAVEELD*KGKHSE
Trigger: TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCAC...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR-3UTR CAA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAGTGGAAGAACTGGATTaGAAAGGAAAGCACAGTGAA +
Preference number: 3 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLVEELD*KGKHSE
Trigger: TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCAC...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR TCA 72 bp TGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTaGATCTATGTTTGCATCTGGCTAGTTCAAGGTGCC +
Preference number: 3 (lower is better)
Translates to: CCGRTGFERKAQ*IYVCIWLVQGA
Trigger: GGCACCTTGAACTAGCCAGATGCAAACATAGATTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR TCA 72 bp AAAGGCTACCGTAAACAACTGTGGAAGAACACAGACTaGCTATGGGCTAGTTGCTGTGGAAGAACTGGATTT +
Preference number: 3 (lower is better)
Translates to: KGYRKQLWKNTD*LWASCCGRTGF
Trigger: AAATCCAGTTCTTCCACAGCAACTAGCCCATAGTCAGTCTGTGTTCTTCCACAGTTGTTTACGGTAGCCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR TCA 72 bp GTGAACTCCAGCTACACAGCATTTTACAGGTTCATATaGAGGAAACAAACACTTTCAAACGTTTCCACAGTG +
Preference number: 3 (lower is better)
Translates to: VNSSYTAFYRFI*RKQTLSNVSTV
Trigger: CACTGTGGAAACGTTTGAAAGTGTTTGTTTCCTTCATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR TCA 72 bp AATGTACTTCAGCTCCTCTTACATTTCTCAGCAACCTaGAAAGGGAAATACTGCCTTTATACATTGAAAACA +
Preference number: 3 (lower is better)
Translates to: NVLQLLLHFSAT*KGKYCLYTLKT
Trigger: TGTTTTCAATGTATAAAGGCAGTATTTCCCTTTTCAGGTTGCTGAGAAATGTAAGAGGAGCTGAAGTACATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTCAAGAAGCTTGCCGGTaGCCGCAGCGGCCGCGGTCC +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGQEACR*PQRPRS
Trigger: GGACCGCGGCCGCTGCGGCCACCGGCAAGCTTCTTG...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCCGCAGCGGGCGCCGTaGGCCCGAGCAGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAPQRAP*ARAAAG
Trigger: TCCTGCTGCTGCTCGGGCTCACGGCGCCCGCTGCGG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTGCGATGTGGCCGAGGTaGGTCAGACTGCAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGAMWPR*VRLQGS
Trigger: GCTGCCCTGCAGTCTGACCCACCTCGGCCACATCGC...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCTCGGTGCCATGGAACTaGTCTACCCCGCAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAISVPWN*STPQGS
Trigger: GCTGCCCTGCGGGGTAGACCAGTTCCATGGCACCGA...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAAGGCAGCTCTTGGTaGCTGTTGGGTCAGGCTCCC +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIQGSSW*LLGQAP
Trigger: GGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTG...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCGTGTGCCAGCGCTGGTaGTTCTCACACACCTCCATC +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIVCQRW*FSHTSI
Trigger: GATGGAGGTGTGTGAGAAGCACCAGCGCTGGCACAC...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCCTTGTCTGAAATGGTaGCCTCGCTGCTGGGTTCGG +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIPCLKW*PRCWVR
Trigger: CCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGG...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTGCTCTTGGTGCCTGTTaGGTCAGGCTCCCATTTGCC +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGALGAC*VRLPFA
Trigger: GGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGC...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCGGCAGGGCCCCGTCATaGCCTCCTGGGAGCAGACAG +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAGRAPS*PPGSRQ
Trigger: CTGTCTGCTCCCAGGAGGCCATGACGGGGCCCTGCC...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072634.15
CDS-3UTR CCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCTGGGCGGCCTTTTCTaGGTCAACAGCCAACACGTG +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAILGGLF*VNSQHV
Trigger: CACGTGTTGGCTGTTGACCCAGAAAAGGCCGCCCAG...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCACCTCCACAATCCCGTaGCTGATGGTGCCGTACTGC +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAITSTIP*LMVPYC
Trigger: GCAGTACGGCACCATCAGCCACGGGATTGTGGAGGT...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACCGCAGCGGGCGCCGTaGGCCCGAGCAGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEPQRAP*ARAAAG
Trigger: TCCTGCTGCTGCTCGGGCTCACGGCGCCCGCTGCGG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTTGCATCTTGTTCAGGTaGCGCTCTTCTGGGGTGAGC +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGCILFR*RSSGVS
Trigger: GCTCACCCCAGAAGAGCGTCACCTGAACAAGATGCA...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTTTCCAAGGCAGCTCTTaGTGCCTGTTGGGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGFQGSS*CLLGQA
Trigger: AGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAA...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTGGCGGTCATTCAGCATaGCTTCTACTCGGGCCAGAT +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGGGHSA*LLLGPD
Trigger: ATCTGGCCCGAGTAGAAGCCATGCTGAATGACCGCC...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCTTCTGGAAGCGGGCGTaGTCATTATCATCCGCTGAG +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIFWKRA*SLSSAE
Trigger: CTCAGCGGATGATAATGAGCACGCCCGCTTCCAGAA...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTGAAGAGCTTGAAGAATaGGATGTGGCCGAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGEELEE*DVAEVG
Trigger: ACCCACCTCGGCCACATCGCATTCTTCAAGCTCTTC...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTACACATCAACATCATTaGTTGGCAGGGGAGTCGGGG +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGTHQHH*LAGESG
Trigger: CCCCGACTCCCCTGCCAACCAATGATGTTGATGTGT...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCACACATCAACATCATTaGTTGGCAGGGGAGTCGGGG +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAITHQHH*LAGESG
Trigger: CCCCGACTCCCCTGCCAACCAATGATGTTGATGTGT...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTACCTGGGATTTCATCTaGGCGGCCTTTTCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGTWDFI*AAFSGS
Trigger: TGACCCAGAAAAGGCCGCCCAGATGAAATCCCAGGT...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCTTCTGGGGTGAGCATTaGGTCAACCTCCACAATCCC +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIFWGEH*VNLHNP
Trigger: GGGATTGTGGAGGTTGACCCAATGCTCACCCCAGAA...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCCCGCAGCGGGCGCCGTaGGCCCGAGCAGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTPQRAP*ARAAAG
Trigger: TCCTGCTGCTGCTCGGGCTCACGGCGCCCGCTGCGG...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTTCAACAGTCTTTGTCTaGGGGCAGCACACATACTCG +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGSTVFV*GQHTYS
Trigger: CGAGTATGTGTGCTGCCCTCAGACAAAGACTGTTGA...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTAACAATCTCCTTGTCTaGAATGGTGCCCTCGCTGCT +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGNNLLV*NGALAA
Trigger: AGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTT...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTCGCAGGGCAGCAGCATaGCATAGCTATATAAGGTCA +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGRRAAA*HSYIRS
Trigger: TGACCTTATATAGCTATGGCATGCTGCTGCCCTGCG...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAAAATTGTTCCTGTTaGCGCCGCAGCCGCCATATA +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIQNCSC*RRSRHI
Trigger: TATATGGCGGCTGCGGCGGCAACAGGAACAATTTTG...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072634.15
CDS-3UTR GCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCTCCCCCGTCTTGTTCTaGCATTCCAGAGCCTTCATT +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAISPVLF*HSRAFI
Trigger: AATGAAGGCTCTGGAATGGCAGAACAAGACGGGGGA...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072634.15
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACAAGAAGCTTGCCGGTaGCCGCAGCGGCCGCGGTCC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEQEACR*PQRPRS
Trigger: GGACCGCGGCCGCTGCGGCCACCGGCAAGCTTCTTG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTAGCCTGTTCCAGCATTaGCTGCAAGAGCCTCTATGT +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGSLFQH*LQEPLC
Trigger: ACATAGAGGCTCTTGCAGCCAATGCTGGAACAGGCT...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTATCAACATCATTGGTTaGCAGGGGAGTCGGGGGAAT +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGINIIG*QGSRGN
Trigger: ATTCCCCCGACTCCCCTGCCAACCAATGATGTTGAT...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072634.15
CDS-3UTR GCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTGGTCAGGCTCCCATTTaGCAGTCTGAATGTTCACAT +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGGQAPI*QSECSH
Trigger: ATGTGAACATTCAGACTGGCAAATGGGAGCCTGACC...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCGGTCAGGCTCCCATTTaGCAGTCTGAATGTTCACAT +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIGQAPI*QSECSH
Trigger: ATGTGAACATTCAGACTGGCAAATGGGAGCCTGACC...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCGCTCTTGGTGCCTGTTaGGTCAGGCTCCCATTTGCC +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAALGAC*VRLPFA
Trigger: GGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGC...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCTGGTGCCCTCGCTGCTaGGTTCGGTTGGATTCTCCT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAWCPRC*VRLDSP
Trigger: AGGAGAATCCAACCGAACCCAGCAGCGAGGGCACCA...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCGCTGCTGCTTCTCACTaGCTGCTTCTTTCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIAAASH*LLLSLK
Trigger: CTTTAGAGAAAGAAGCAGCCAGTGAGAAGCAGCAGC...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCTGGGCGGCCTTTTCTaGGTCAACAGCCAACACGTG +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSALGGLF*VNSQHV
Trigger: CACGTGTTGGCTGTTGACCCAGAAAAGGCCGCCCAG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTTTCCTCATCTGCTGCTaGTTCTGTGAAGTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGFLICC*FCEVFQ
Trigger: TTGGAAGACTTCACAGAAGCAGCAGCAGATGAGGAA...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTTTCTTCCTCATCTGCTaGTGCTTCTGTGAAGTCTTC +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGFFLIC*CFCEVF
Trigger: GAAGACTTCACAGAAGCAGCAGCAGATGAGGAAGAA...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCCAAGAAGCTTGCCGGTaGCCGCAGCGGCCGCGGTCC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTQEACR*PQRPRS
Trigger: GGACCGCGGCCGCTGCGGCCACCGGCAAGCTTCTTG...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAGCTCTTGGTGCCTGTTaGGTCAGGCTCCCATTTGCC +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLALGAC*VRLPFA
Trigger: GGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGC...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCTTCCAAGGCAGCTCTTaGTGCCTGTTGGGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAFQGSS*CLLGQA
Trigger: AGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAA...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTTCCATCCGCTCTTGGTaGAAAAACTGGCAGTTATCT +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGSIRSW*KNWQLS
Trigger: AGATAACTGCCAGTTTTTCCACCAAGAGCGGATGGA...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAAACGTGTGCCAGCGCTaGTGCTTCTCACACACCTCC +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLNVCQR*CFSHTS
Trigger: GGAGGTGTGTGAGAAGCACCAGCGCTGGCACACGTT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGTCGGTGCCATGGAACTaGTCTACCCCGCAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMSVPWN*STPQGS
Trigger: GCTGCCCTGCGGGGTAGACCAGTTCCATGGCACCGA...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTACTGGGCGGCCTTTTCTaGGTCAACAGCCAACACGTG +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLLGGLF*VNSQHV
Trigger: CACGTGTTGGCTGTTGACCCAGAAAAGGCCGCCCAG...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAAAGGGATGGAGAGGGTaGAACGGCGGGATCTCCTCA +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLKGWRG*NGGISS
Trigger: TGAGGAGATCCCGCCGTTCCACCCTCTCCATCCCTT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCAGGTGACGCTCTTCTaGGGTGAGCATTGGGTCAAC +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAQVTLF*GEHWVN
Trigger: GTTGACCCAATGCTCACCCCAGAAGAGCGTCACCTG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTCTCATTATCATCCGCTaGGGTCTCAAAATACACATC +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGLIIIR*GLKIHI
Trigger: GATGTGTATTTTGAGACCTCAGCGGATGATAATGAG...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTCCACAATCCCGTGGCTaGTGGTGCCGTACTGCCTCT +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPPQSRG*WCRTAS
Trigger: AGAGGCAGTACGGCACCATCAGCCACGGGATTGTGG...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCAGCACACATACTCGGTaGCATGGAACTGGTCTACCC +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSASTHTR*HGTGLP
Trigger: GGGTAGACCAGTTCCATGGCACCGAGTATGTGTGCT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCTTCTGGAAGCGGGCGTaGTCATTATCATCCGCTGAG +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAFWKRA*SLSSAE
Trigger: CTCAGCGGATGATAATGAGCACGCCCGCTTCCAGAA...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCGAAGAGCTTGAAGAATaGGATGTGGCCGAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAEELEE*DVAEVG
Trigger: ACCCACCTCGGCCACATCGCATTCTTCAAGCTCTTC...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTACTGATGGTGCCGTACTaGCTCTTCCTCAGCATCACC +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLLMVPY*LFLSIT
Trigger: GGTGATGCTGAGGAAGAGGCAGTACGGCACCATCAG...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAACATACTCGGTGCCATaGAACTGGTCTACCCCGCAG +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLTYSVP*NWSTPQ
Trigger: CTGCGGGGTAGACCAGTTCCATGGCACCGAGTATGT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTACAGCTTTAACATCGTaGACAATCTCCTTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGTALTS*TISLSE
Trigger: TTCAGACAAGGAGATTGTTCACGATGTTAAAGCTGT...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072634.15
CDS-3UTR TCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTCCAGAGTCTCGTCAATaGCCATATTTTCATCCATTT +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGPESRQ*PYFHPF
Trigger: AAATGGATGAAAATATGGTCATTGACGAGACTCTGG...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGGACGCTCTTCTGGGGTaGGCATTGGGTCAACCTCCA +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMDALLG*ALGQPP
Trigger: TGGAGGTTGACCCAATGCTCACCCCAGAAGAGCGTC...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCTGGTACAACTCCGGCTaGGTGTCTTCATTCTCAGAC +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAWYNSG*VSSFSD
Trigger: GTCTGAGAATGAAGACACTCAGCCGGAGTTGTACCA...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079758.9
CDS-3UTR GCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACAAGGCAGCTCTTGGTaGCTGTTGGGTCAGGCTCCC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEQGSSW*LLGQAP
Trigger: GGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTATCACATTTGTGATCTaGAGCTCTGGATATATCTCC +
Preference number: 4 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGITFVI*SSGYIS
Trigger: GGAGATATATCCAGAGCTGCAGATCACAAATGTGAT...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAGAAGAGCTTGAAGAATaGGATGTGGCCGAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLEELEE*DVAEVG
Trigger: ACCCACCTCGGCCACATCGCATTCTTCAAGCTCTTC...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCGTAGCAATGGCCACTaGGATAACCAGCAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSARSNGH*DNQQAN
Trigger: ATTGGCTTGCTGGTTATCGCAGTGGCCATTGCTACG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTTGGTGCCCTCGCTGCTaGGTTCGGTTGGATTCTCCT +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPWCPRC*VRLDSP
Trigger: AGGAGAATCCAACCGAACCCAGCAGCGAGGGCACCA...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTATCTCCTTGTCTGAAATaGTGCCCTCGCTGCTGGGTT +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLSPCLK*CPRCWV
Trigger: AACCCAGCAGCGAGGGCACCATTTCAGACAAGGAGA...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAACACATCAACATCATTaGTTGGCAGGGGAGTCGGGG +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLTHQHH*LAGESG
Trigger: CCCCGACTCCCCTGCCAACCAATGATGTTGATGTGT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGCGATGTGGCCGAGGTaGGTCAGACTGCAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTAMWPR*VRLQGS
Trigger: GCTGCCCTGCAGTCTGACCCACCTCGGCCACATCGC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAACCTGGGATTTCATCTaGGCGGCCTTTTCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLTWDFI*AAFSGS
Trigger: TGACCCAGAAAAGGCCGCCCAGATGAAATCCCAGGT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGACCTCCACAATCCCGTaGCTGATGGTGCCGTACTGC +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMTSTIP*LMVPYC
Trigger: GCAGTACGGCACCATCAGCCACGGGATTGTGGAGGT...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTATTCTGGGGTGAGCATTaGGTCAACCTCCACAATCCC +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLFWGEH*VNLHNP
Trigger: GGGATTGTGGAGGTTGACCCAATGCTCACCCCAGAA...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAATCAACATCATTGGTTaGCAGGGGAGTCGGGGGAAC +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLINIIG*QGSRGN
Trigger: GTTCCCCCGACTCCCCTGCCAACCAATGATGTTGAT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAAACAATCTCCTTGTCTaGAATGGTGCCCTCGCTGCT +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLNNLLV*NGALAA
Trigger: AGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCATCCACAGGGTTCTCTaGGATGGAGGAGGTAAATTG +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAIHRVL*DGGGKL
Trigger: CAATTTACCTCCTCCATCTCAGAGAACCCTGTGGAT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTTGCATCTTGTTCAGGTaGCGCTCTTCTGGGGTGAGC +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPCILFR*RSSGVS
Trigger: GCTCACCCCAGAAGAGCGTCACCTGAACAAGATGCA...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAGTGTGCCAGCGCTGGTaGTTCTCACACACCTCCATC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEVCQRW*FSHTSI
Trigger: GATGGAGGTGTGTGAGAAGCACCAGCGCTGGCACAC...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTACGCAGGGCAGCAGCATaGCATAGCTATATAAGGTCA +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLRRAAA*HSYIRS
Trigger: TGACCTTATATAGCTATGGCATGCTGCTGCCCTGCG...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACCTTGTCTGAAATGGTaGCCTCGCTGCTGGGTTCGG +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEPCLKW*PRCWVR
Trigger: CCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTACGTAGCAATGGCCACTaGGATAACCAGCAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLRSNGH*DNQQAN
Trigger: ATTGGCTTGCTGGTTATCGCAGTGGCCATTGCTACG...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCACCTCCATCCGCTCTTaGTGGAAAAACTGGCAGTTA +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSATSIRS*WKNWQL
Trigger: TAACTGCCAGTTTTTCCACCAAGAGCGGATGGAGGT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTACATACTCGGTGCCATaGAACTGGTCTACCCCGCAG +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPTYSVP*NWSTPQ
Trigger: CTGCGGGGTAGACCAGTTCCATGGCACCGAGTATGT...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCGCTGCTGGGTTCGGTTaGATTCTCCTCATTGTAATC +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAAAGFG*ILLIVI
Trigger: GATTACAATGAGGAGAATCCAACCGAACCCAGCAGC...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCGCTGCTGCTTCTCACTaGCTGCTTCTTTCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAAAASH*LLLSLK
Trigger: CTTTAGAGAAAGAAGCAGCCAGTGAGAAGCAGCAGC...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGGGCGGTCATTCAGCATaGCTTCTACTCGGGCCAGAT +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMGGHSA*LLLGPD
Trigger: ATCTGGCCCGAGTAGAAGCCATGCTGAATGACCGCC...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTAGGTGTGTCATCACCTaGGATTTCATCTGGGCGGCC +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPRCVIT*DFIWAA
Trigger: GGCCGCCCAGATGAAATCCCAGGTGATGACACACCT...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAATCAGACATGCCTCCTTaGCTAACGTGTGCCAGCGCT +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSESDMPP*LTCASA
Trigger: AGCGCTGGCACACGTTAGTCAAGGAGGCATGTCTGA...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAATCCACAGGGTTCTCTaGGATGGAGGAGGTAAATTG +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLIHRVL*DGGGKL
Trigger: CAATTTACCTCCTCCATCTCAGAGAACCCTGTGGAT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCTTCCTCATCTGCTGCTaGTTCTGTGAAGTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAFLICC*FCEVFQ
Trigger: TTGGAAGACTTCACAGAAGCAGCAGCAGATGAGGAA...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGTTCTGGAAGCGGGCGTaGTCATTATCATCCGCTGAG +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMFWKRA*SLSSAE
Trigger: CTCAGCGGATGATAATGAGCACGCCCGCTTCCAGAA...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGTCTCCTTGTCTGAAATaGTGCCCTCGCTGCTGGGTT +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMSPCLK*CPRCWV
Trigger: AACCCAGCAGCGAGGGCACCATTTCAGACAAGGAGA...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAATCTACTCGGGCCAGATaGGTTTCCACAAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSESTRAR*VSTSCC
Trigger: GCAGCAGCTTGTGGAAACCCATCTGGCCCGAGTAGA...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAGGCGGTCATTCAGCATaGCTTCTACTCGGGCCAGAT +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEGGHSA*LLLGPD
Trigger: ATCTGGCCCGAGTAGAAGCCATGCTGAATGACCGCC...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAGCGATGTGGCCGAGGTaGGTCAGACTGCAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQAMWPR*VRLQGS
Trigger: GCTGCCCTGCAGTCTGACCCACCTCGGCCACATCGC...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAAGGTGTGTCATCACCTaGGATTTCATCTGGGCGGCC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSERCVIT*DFIWAA
Trigger: GGCCGCCCAGATGAAATCCCAGGTGATGACACACCT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCTTTCTTCAATCACATaGAGGTGTGTCATCACCTGG +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSALSSIT*RCVITW
Trigger: CCAGGTGATGACACACCTCCATGTGATTGAAGAAAG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCAGAAGAGAAAGACTTTaGTTCCTTCTTTCTTCAATC +
Preference number: 4 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIRRERL*FLLSSI
Trigger: GATTGAAGAAAGAAGGAACCAAAGTCTTTCTCTTCT...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGTTCTGGGGTGAGCATTaGGTCAACCTCCACAATCCC +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMFWGEH*VNLHNP
Trigger: GGGATTGTGGAGGTTGACCCAATGCTCACCCCAGAA...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACAGGTGACGCTCTTCTaGGGTGAGCATTGGGTCAAC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEQVTLF*GEHWVN
Trigger: GTTGACCCAATGCTCACCCCAGAAGAGCGTCACCTG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCTCCCATTTGCCAGTCTaGATGTTCACATGCATATTC +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSASHLPV*MFTCIF
Trigger: GAATATGCATGTGAACATTCAGACTGGCAAATGGGA...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCTCATTATCATCCGCTaGGGTCTCAAAATACACATC +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSALIIIR*GLKIHI
Trigger: GATGTGTATTTTGAGACCTCAGCGGATGATAATGAG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGACGCTCTTCTGGGGTaGGCATTGGGTCAACCTCCA +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTDALLG*ALGQPP
Trigger: TGGAGGTTGACCCAATGCTCACCCCAGAAGAGCGTC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGTGTGCCAGCGCTGGTaGTTCTCACACACCTCCATC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTVCQRW*FSHTSI
Trigger: GATGGAGGTGTGTGAGAAGCACCAGCGCTGGCACAC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTCGCAGGGCAGCAGCATaGCATAGCTATATAAGGTCA +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPRRAAA*HSYIRS
Trigger: TGACCTTATATAGCTATGGCATGCTGCTGCCCTGCG...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAAGCACACATACTCGGTaGCATGGAACTGGTCTACCC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSESTHTR*HGTGLP
Trigger: GGGTAGACCAGTTCCATGGCACCGAGTATGTGTGCT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTATTCCTCATCTGCTGCTaGTTCTGTGAAGTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLFLICC*FCEVFQ
Trigger: TTGGAAGACTTCACAGAAGCAGCAGCAGATGAGGAA...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTATTCTTCCTCATCTGCTaGTGCTTCTGTGAAGTCTTC +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLFFLIC*CFCEVF
Trigger: GAAGACTTCACAGAAGCAGCAGCAGATGAGGAAGAA...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAATGGGTTTCCACAAGCTaGTGCTTCTCACTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEWVSTS*CFSLAA
Trigger: AGCAGCCAGTGAGAAGCAGCAGCTTGTGGAAACCCA...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGAGCCTGTTCCAGCATTaGCTGCAAGAGCCTCTATGT +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMSLFQH*LQEPLC
Trigger: ACATAGAGGCTCTTGCAGCCAATGCTGGAACAGGCT...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTATCCATCCGCTCTTGGTaGAAAAACTGGCAGTTATCT +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLSIRSW*KNWQLS
Trigger: AGATAACTGCCAGTTTTTCCACCAAGAGCGGATGGA...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTTGTTCCTTAGCCTTCTaGAAGCGGGCGTGCTCATTA +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPCSLAF*KRACSL
Trigger: TAATGAGCACGCCCGCTTCCAGAAGGCTAAGGAACA...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCATAGCTTGGAAATGCTaGATGAGGGTCTGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAIAWKC*MRVCLS
Trigger: AGAAAGACAGACCCTCATCCAGCATTTCCAAGCTAT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTACTTTCTTCAATCACATaGAGGTGTGTCATCACCTGG +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLLSSIT*RCVITW
Trigger: CCAGGTGATGACACACCTCCATGTGATTGAAGAAAG...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAATCAACATCATTGGTTaGCAGGGGAGTCGGGGGAAC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEINIIG*QGSRGN
Trigger: GTTCCCCCGACTCCCCTGCCAACCAATGATGTTGAT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTACTTCCATCACATTTGTaGTCTGCAGCTCTGGATATA +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLLPSHL*SAALDI
Trigger: TATATCCAGAGCTGCAGATCACAAATGTGATGGAAG...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAATCAACAGTCTTTGTCTaGGGGCAGCACACATACTCG +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSESTVFV*GQHTYS
Trigger: CGAGTATGTGTGCTGCCCTCAGACAAAGACTGTTGA...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAAACAATCTCCTTGTCTaGAATGGTGCCCTCGCTGCT +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSENNLLV*NGALAA
Trigger: AGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCACAATCCCGTGGCTaGTGGTGCCGTACTGCCTCT +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQPQSRG*WCRTAS
Trigger: AGAGGCAGTACGGCACCATCAGCCACGGGATTGTGG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCGGAACTTTAACATCGTaGACAATCTCCTTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAGTLTS*TISLSE
Trigger: TTCAGACAAGGAGATTGTTCACGATGTTAAAGTTCC...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGGGTCAGGCTCCCATTTaGCAGTCTGAATGTTCACAT +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMGQAPI*QSECSH
Trigger: ATGTGAACATTCAGACTGGCAAATGGGAGCCTGACC...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCATTGACTGGCTGGTTTaGTTCCATCACATTTGTGAT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAIDWLV*FHHICD
Trigger: ATCACAAATGTGATGGAAGCAAACCAGCCAGTCAAT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGAATTTTCCAGAGCTATaGGTCGGCGGTCATTCAGCA +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMNFPEL*VGGHSA
Trigger: TGCTGAATGACCGCCGACGCATAGCTCTGGAAAATT...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTAATTTTCCAGAGCTATaGGTCGGCGGTCATTCAGCA +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPNFPEL*VGGHSA
Trigger: TGCTGAATGACCGCCGACGCATAGCTCTGGAAAATT...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAATCCCCCGTCTTGTTCTaGCATTCCAGAGCCTTCATT +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSESPVLF*HSRAFI
Trigger: AATGAAGGCTCTGGAATGGCAGAACAAGACGGGGGA...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072634.15
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCCTGATGGTGCCGTACTaGCTCTTCCTCAGCATCACC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTLMVPY*LFLSIT
Trigger: GGTGATGCTGAGGAAGAGGCAGTACGGCACCATCAG...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCACTATCAATATTGACTaGCTGGTTTGCTTCCATCAC +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSATINID*LVCFHH
Trigger: GTGATGGAAGCAAACCAGCCAGTCAATATTGATAGT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTACCTCCATCCGCTCTTaGTGGAAAAACTGGCAGTTA +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPTSIRS*WKNWQL
Trigger: TAACTGCCAGTTTTTCCACCAAGAGCGGATGGAGGT...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAATAGCTTGGAAATGCTaGATGAGGGTCTGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLIAWKC*MRVCLS
Trigger: AGAAAGACAGACCCTCATCCAGCATTTCCAAGCTAT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCTCTACTCGGGCCAGATaGGTTTCCACAAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTSTRAR*VSTSCC
Trigger: GCAGCAGCTTGTGGAAACCCATCTGGCCCGAGTAGA...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTCATTGCTGCTCAAACTaGAATCCTCCCTTAAAGGTC +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPHCCSN*NPPLKV
Trigger: GACCTTTAAGGGAGGATTTCAGTTTGAGCAGCAATG...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAATTGACTGGCTGGTTTaGTTCCATCACATTTGTGAT +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLIDWLV*FHHICD
Trigger: ATCACAAATGTGATGGAAGCAAACCAGCCAGTCAAT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCGAAGTCTTCCAAATCTaGTTCAGTAGGAAATTCACT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAEVFQI*FSRKFT
Trigger: AGTGAATTTCCTACTGAAGCAGATTTGGAAGACTTC...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCTTGTCTGAAATGGTaGCCTCGCTGCTGGGTTCGG +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQPCLKW*PRCWVR
Trigger: CCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCTGGGTTTCCACAAGCTaGTGCTTCTCACTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTWVSTS*CFSLAA
Trigger: AGCAGCCAGTGAGAAGCAGCAGCTTGTGGAAACCCA...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCTCAATATTGACTGGCTaGTTTGCTTCCATCACATTT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSASILTG*FASITF
Trigger: AAATGTGATGGAAGCAAACCAGCCAGTCAATATTGA...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGTCCATCCGCTCTTGGTaGAAAAACTGGCAGTTATCT +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMSIRSW*KNWQLS
Trigger: AGATAACTGCCAGTTTTTCCACCAAGAGCGGATGGA...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAAACGTGTGCCAGCGCTaGTGCTTCTCACACACCTCC +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQNVCQR*CFSHTS
Trigger: GGAGGTGTGTGAGAAGCACCAGCGCTGGCACACGTT...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAATGGTGCCCTCGCTGCTaGGTTCGGTTGGATTCTCCT +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQWCPRC*VRLDSP
Trigger: AGGAGAATCCAACCGAACCCAGCAGCGAGGGCACCA...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGGCTTTAACCATAGCTTaGAAATGCTGGATGAGGGTC +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMALTIA*KCWMRV
Trigger: GACCCTCATCCAGCATTTCCAAGCTATGGTTAAAGC...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCACCTGGGATTTCATCTaGGCGGCCTTTTCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTTWDFI*AAFSGS
Trigger: TGACCCAGAAAAGGCCGCCCAGATGAAATCCCAGGT...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAAAGGGATGGAGAGGGTaGAACGGCGGGATCTCCTCA +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQKGWRG*NGGISS
Trigger: TGAGGAGATCCCGCCGTTCCACCCTCTCCATCCCTT...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCAGGTATTTGTAGGTTaGGTTTTCATAACCATGGTT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAQVFVG*VFITMV
Trigger: AACCATGGTTATGAAAACCCAACCTACAAATACCTG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAATCAGACATGCCTCCTTaGCTAACGTGTGCCAGCGCT +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQSDMPP*LTCASA
Trigger: AGCGCTGGCACACGTTAGTCAAGGAGGCATGTCTGA...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTCTCATTATCATCCGCTaGGGTCTCAAAATACACATC +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPLIIIR*GLKIHI
Trigger: GATGTGTATTTTGAGACCTCAGCGGATGATAATGAG...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAAATCACTTTTTCTTCTaGACCAATCAGTCCCCCGTC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSENHFFF*TNQSPV
Trigger: GACGGGGGACTGATTGGTGCAGAAGAAAAAGTGATT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCCGTAGCAATGGCCACTaGGATAACCAGCAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTRSNGH*DNQQAN
Trigger: ATTGGCTTGCTGGTTATCGCAGTGGCCATTGCTACG...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAATTCCAAGGCAGCTCTTaGTGCCTGTTGGGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQFQGSS*CLLGQA
Trigger: AGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAA...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCACAAGACACTTGAATaGTATAACAATGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAHKTLE*YNNVTL
Trigger: AAGAGTCACATTGTTATACCATTCAAGTGTCTTGTG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGTCTTGGTGGAAAAACTaGCAGTTATCTGGAACTAGC +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMSWWKN*QLSGTS
Trigger: GCTAGTTCCAGATAACTGCCAGTTTTTCCACCAAGA...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAACATACTCGGTGCCATaGAACTGGTCTACCCCGCAG +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQTYSVP*NWSTPQ
Trigger: CTGCGGGGTAGACCAGTTCCATGGCACCGAGTATGT...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCCGTCATGGCCTCCTaGGAGCAGACAGCTTTAACA +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQPVMAS*EQTALT
Trigger: TGTTAAAGCTGTCTGCTCCCAGGAGGCCATGACGGG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072634.15
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGTACGCACTTTCCCTTaGAGAGGTCGAAGTACCAAC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTVRTFP*RGRSTN
Trigger: GTTGGTACTTCGACCTCTCCAAGGGAAAGTGCGTAC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072634.15
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCTGTTCCTTAGCCTTCTaGAAGCGGGCGTGCTCATTA +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTCSLAF*KRACSL
Trigger: TAATGAGCACGCCCGCTTCCAGAAGGCTAAGGAACA...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTATAGCTTGGAAATGCTaGATGAGGGTCTGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPIAWKC*MRVCLS
Trigger: AGAAAGACAGACCCTCATCCAGCATTTCCAAGCTAT...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGGTTGGTAATGACGAATaGTATGCAGGCGATCTTTGT +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMVGNDE*YAGDLC
Trigger: ACAAAGATCGCCTGCATACCATTCGTCATTACCAAC...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACTTCCATCACATTTGTaGTCTGCAGCTCTGGATATA +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSELPSHL*SAALDI
Trigger: TATATCCAGAGCTGCAGATCACAAATGTGATGGAAG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTATCACATTTGTGATCTaGAGCTCTGGATATATCTCC +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPITFVI*SSGYIS
Trigger: GGAGATATATCCAGAGCTGCAGATCACAAATGTGAT...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAATGGGTTTCCACAAGCTaGTGCTTCTCACTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQWVSTS*CFSLAA
Trigger: AGCAGCCAGTGAGAAGCAGCAGCTTGTGGAAACCCA...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGACTATCAATATTGACTaGCTGGTTTGCTTCCATCAC +
Preference number: 4 (lower is better)
Translates to: AKGCERELQLHSILQVHMTINID*LVCFHH
Trigger: GTGATGGAAGCAAACCAGCCAGTCAATATTGATAGT...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCACCTCCATCCGCTCTTaGTGGAAAAACTGGCAGTTA +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTTSIRS*WKNWQL
Trigger: TAACTGCCAGTTTTTCCACCAAGAGCGGATGGAGGT...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGCTGCTGGGTTCGGTTaGATTCTCCTCATTGTAATC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTAAGFG*ILLIVI
Trigger: GATTACAATGAGGAGAATCCAACCGAACCCAGCAGC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGCTGCTGCTTCTCACTaGCTGCTTCTTTCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTAAASH*LLLSLK
Trigger: CTTTAGAGAAAGAAGCAGCCAGTGAGAAGCAGCAGC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAAGAAGAGAAAGACTTTaGTTCCTTCTTTCTTCAATC +
Preference number: 4 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLRRERL*FLLSSI
Trigger: GATTGAAGAAAGAAGGAACCAAAGTCTTTCTCTTCT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
3UTR CAA 72 bp TGTCTACAGATCCAATTTCATGCACAACCCAGAACATaGTCCTTTCATATGATGAAGCCTCCCGTGAACTCT +
Preference number: 4 (lower is better)
Translates to: CLQIQFHAQPRT*SFHMMKPPVNS
Trigger: AGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGTTCTGGGTTGTGCATGAAATTGGATCTGTAGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAATCAACAGTCTTTGTCTaGGGGCAGCACACATACTCG +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQSTVFV*GQHTYS
Trigger: CGAGTATGTGTGCTGCCCTCAGACAAAGACTGTTGA...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCCATTGCTGCTCAAACTaGAATCCTCCCTTAAAGGTC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTHCCSN*NPPLKV
Trigger: GACCTTTAAGGGAGGATTTCAGTTTGAGCAGCAATG...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAATCACATTTGTGATCTaGAGCTCTGGATATATCTCC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEITFVI*SSGYIS
Trigger: GGAGATATATCCAGAGCTGCAGATCACAAATGTGAT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCTTCTTCCTCATCTGCTaGTGCTTCTGTGAAGTCTTC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTFFLIC*CFCEVF
Trigger: GAAGACTTCACAGAAGCAGCAGCAGATGAGGAAGAA...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTTCAATATTGACTGGCTaGTTTGCTTCCATCACATTT +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPSILTG*FASITF
Trigger: AAATGTGATGGAAGCAAACCAGCCAGTCAATATTGA...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGCTTTAACCATAGCTTaGAAATGCTGGATGAGGGTC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTALTIA*KCWMRV
Trigger: GACCCTCATCCAGCATTTCCAAGCTATGGTTAAAGC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAATCCACAGGGTTCTCTaGGATGGAGGAGGTAAATTG +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQIHRVL*DGGGKL
Trigger: CAATTTACCTCCTCCATCTCAGAGAACCCTGTGGAT...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAAATTTTCCAGAGCTATaGGTCGGCGGTCATTCAGCA +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQNFPEL*VGGHSA
Trigger: TGCTGAATGACCGCCGACGCATAGCTCTGGAAAATT...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAATCAATATTGACTGGCTaGTTTGCTTCCATCACATTT +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSESILTG*FASITF
Trigger: AAATGTGATGGAAGCAAACCAGCCAGTCAATATTGA...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTCACAAGACACTTGAATaGTATAACAATGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPHKTLE*YNNVTL
Trigger: AAGAGTCACATTGTTATACCATTCAAGTGTCTTGTG...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCTCTTGGTGGAAAAACTaGCAGTTATCTGGAACTAGC +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTSWWKN*QLSGTS
Trigger: GCTAGTTCCAGATAACTGCCAGTTTTTCCACCAAGA...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGTTGGTAATGACGAATaGTATGCAGGCGATCTTTGT +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTVGNDE*YAGDLC
Trigger: ACAAAGATCGCCTGCATACCATTCGTCATTACCAAC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACAGGTATTTGTAGGTTaGGTTTTCATAACCATGGTT +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEQVFVG*VFITMV
Trigger: AACCATGGTTATGAAAACCCAACCTACAAATACCTG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCCCAGAGTCTCGTCAATaGCCATATTTTCATCCATTT +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTPESRQ*PYFHPF
Trigger: AAATGGATGAAAATATGGTCATTGACGAGACTCTGG...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCATTGACTGGCTGGTTTaGTTCCATCACATTTGTGAT +
Preference number: 4 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTIDWLV*FHHICD
Trigger: ATCACAAATGTGATGGAAGCAAACCAGCCAGTCAAT...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAAATCACTTTTTCTTCTaGACCAATCAGTCCCCCGTC +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQNHFFF*TNQSPV
Trigger: GACGGGGGACTGATTGGTGCAGAAGAAAAAGTGATT...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACTTTCTTCAATCACATaGAGGTGTGTCATCACCTGG +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQLSSIT*RCVITW
Trigger: CCAGGTGATGACACACCTCCATGTGATTGAAGAAAG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAAGAAGAGAAAGACTTTaGTTCCTTCTTTCTTCAATC +
Preference number: 4 (lower is better)
Translates to: DYGLVAVEELDLKGKHSERRERL*FLLSSI
Trigger: GATTGAAGAAAGAAGGAACCAAAGTCTTTCTCTTCT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAATCCCATTTGCCAGTCTaGATGTTCACATGCATATTC +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQSHLPV*MFTCIF
Trigger: GAATATGCATGTGAACATTCAGACTGGCAAATGGGA...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAGTTGGTAATGACGAATaGTATGCAGGCGATCTTTGT +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQVGNDE*YAGDLC
Trigger: ACAAAGATCGCCTGCATACCATTCGTCATTACCAAC...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR TCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCAGAGTCTCGTCAATaGCCATATTTTCATCCATTT +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQPESRQ*PYFHPF
Trigger: AAATGGATGAAAATATGGTCATTGACGAGACTCTGG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAACTATCAATATTGACTaGCTGGTTTGCTTCCATCAC +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQTINID*LVCFHH
Trigger: GTGATGGAAGCAAACCAGCCAGTCAATATTGATAGT...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR GCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAGAAGTCTTCCAAATCTaGTTCAGTAGGAAATTCACT +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQEVFQI*FSRKFT
Trigger: AGTGAATTTCCTACTGAAGCAGATTTGGAAGACTTC...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CCA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACAGGTATTTGTAGGTTaGGTTTTCATAACCATGGTT +
Preference number: 4 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQQVFVG*VFITMV
Trigger: AACCATGGTTATGAAAACCCAACCTACAAATACCTG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCGTTCCAAGGCAGCTCTaGGTGCCTGTTGGGTCAGGC +
Preference number: 5 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIVPRQL*VPVGSG
Trigger: GCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAAC...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS GCA 90 bp CCCTCAGTCAGACATGCCTCCTTGACTAACGTGTGCCAGCGCTGGTaGTTCTCACACACCTCCATCCGCTCTTGGTGGAAAAACTGGCAG +
Preference number: 5 (lower is better)
Translates to: PSVRHASLTNVCQRW*FSHTSIRSWWKNWQ
Trigger: CTGCCAGTTTTTCCACCAAGAGCGGATGGAGGTGTGTGAGAAGCACCAGCGCTGGCACACGTTAGTCAAGGAGGCATGTCTGACTGAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS GCA 90 bp CATACTCGGTGCCATGGAACTGGTCTACCCCGCAGGGCAGCAGCATaGCATAGCTATATAAGGTCAGCCCCTCAGTCAGACATGCCTCCT +
Preference number: 5 (lower is better)
Translates to: HTRCHGTGLPRRAAA*HSYIRSAPQSDMPP
Trigger: AGGAGGCATGTCTGACTGAGGGGCTGACCTTATATAGCTATGGCATGCTGCTGCCCTGCGGGGTAGACCAGTTCCATGGCACCGAGTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 90 bp TCTGCCATTCCAGAGCCTTCATTCTCAGACAAGGATGGGAAGGGATaGAGAGGGTGGAACGGCGGGATCTCCTCACTCTCCTCAGAGCTC +
Preference number: 5 (lower is better)
Translates to: SAIPEPSFSDKDGKG*RGWNGGISSLSSEL
Trigger: GAGCTCTGAGGAGAGTGAGGAGATCCCGCCGTTCCACCCTCTCCATCCCTTCCCATCCTTGTCTGAGAATGAAGGCTCTGGAATGGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072634.15
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTCTCTTGCACTGCCTTTaGTCCCTTCGGCACCAACTA +
Preference number: 5 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGLLHCL*SLRHQL
Trigger: TAGTTGGTGCCGAAGGGACAAAAGGCAGTGCAAGAG...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTCACCTCCATCCGCTCTaGGTGGAAAAACTGGCAGTT +
Preference number: 5 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGHLHPL*VEKLAV
Trigger: AACTGCCAGTTTTTCCACCAAGAGCGGATGGAGGTG...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTTCAAAATTGTTCCTGTaGCCGCCGCAGCCGCCATAT +
Preference number: 5 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGSKLFL*PPQPPY
Trigger: ATATGGCGGCTGCGGCGGCAACAGGAACAATTTTGA...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072634.15
CDS-3UTR CAA 90 bp GAGGTGAGTGAGGTACAAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCGATGGAGGAGGTAAATaGGTCCATATCCGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: EVSEVQRQAEGQCMEGAIDGGGK*VHIRSL
Trigger: CAGCGAGCGGATATGGACCAATTTACCTCCTCCATC...GATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTTGTACCTCACTCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS TCA 90 bp CTCCTCACTCTCCTCAGAGCTCACCCGGACATCCACAGGGTTCTCTaGGATGGAGGAGGTAAATTGGTCCATATCCGCTCGCTGTTCCTG +
Preference number: 5 (lower is better)
Translates to: LLTLLRAHPDIHRVL*DGGGKLVHIRSLFL
Trigger: CAGGAACAGCGAGCGGATATGGACCAATTTACCTCCTCCATCTCAGAGAACCCTGTGGATGTCCGGGTGAGCTCTGAGGAGAGTGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCAGCTCTTGGTGCCTGTaGGGTCAGGCTCCCATTTGC +
Preference number: 5 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSASSWCL*GQAPIC
Trigger: GCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS TCA 90 bp TCCTCTTCTTTGGACATAGTCGAGTCCGAGTCAACAGTCTTTGTCTaGGGGCAGCACACATACTCGGTGCCATGGAACTGGTCTACCCCG +
Preference number: 5 (lower is better)
Translates to: SSSLDIVESESTVFV*GQHTYSVPWNWSTP
Trigger: CGGGGTAGACCAGTTCCATGGCACCGAGTATGTGTGCTGCCCTCAGACAAAGACTGTTGACTCGGACTCGACTATGTCCAAAGAAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 90 bp CCTGGCAGTACTGAAGAACCTCCTCCTTTGTTCCAAGGCAGCTCTTaGTGCCTGTTGGGTCAGGCTCCCATTTGCCAGTCTGAATGTTCA +
Preference number: 5 (lower is better)
Translates to: PGSTEEPPPLFQGSS*CLLGQAPICQSECS
Trigger: TGAACATTCAGACTGGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTCAGTACTGCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTAGCTTTAACCATAGCTaGGAAATGCTGGATGAGGGT +
Preference number: 5 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGSFNHS*EMLDEG
Trigger: ACCCTCATCCAGCATTTCCAAGCTATGGTTAAAGCT...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AAAGGCAGGCAGAGGGTCAGTGCATGGAGGGAGCCATCCAATGAGGAGGTGGGTAACAGCCAACACGTGTaGGTAATGACGAATGGTATG +
Preference number: 5 (lower is better)
Translates to: KGRQRVSAWREPSNEEVGNSQHV*VMTNGM
Trigger: CATACCATTCGTCATTACCAACACGTGTTGGCTGTT...ACCCACCTCCTCATTGGATGGCTCCCTCCATGCACTGACCCTCTGCCTGCCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS TCA 90 bp CAGGGGAGTCGGGGGAACTTTAACATCGTGAACAATCTCCTTGTCTaGAATGGTGCCCTCGCTGCTGGGTTCGGTTGGATTCTCCTCATT +
Preference number: 5 (lower is better)
Translates to: QGSRGNFNIVNNLLV*NGALAAGFGWILLI
Trigger: AATGAGGAGAATCCAACCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTTCACGATGTTAAAGTTCCCCCGACTCCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS GCA 90 bp GGCAGTACTGAAGAACCTCCTCCTTTGTTCCAAGGCAGCTCTTGGTaGCTGTTGGGTCAGGCTCCCATTTGCCAGTCTGAATGTTCACAT +
Preference number: 5 (lower is better)
Translates to: GSTEEPPPLFQGSSW*LLGQAPICQSECSH
Trigger: ATGTGAACATTCAGACTGGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTCAGTACTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCCTCTTGCACTGCCTTTaGTCCCTTCGGCACCAACTA +
Preference number: 5 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSALLHCL*SLRHQL
Trigger: TAGTTGGTGCCGAAGGGACAAAAGGCAGTGCAAGAG...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTACATCAACATCATTGGTaGGCAGGGGAGTCGGGGGAA +
Preference number: 5 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLHQHHW*AGESGE
Trigger: TTCCCCCGACTCCCCTGCCAACCAATGATGTTGATG...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCTACACATCAACATCATaGGTTGGCAGGGGAGTCGGG +
Preference number: 5 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSAYTSTS*VGRGVG
Trigger: CCCGACTCCCCTGCCAACCAATGATGTTGATGTGTA...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS TCA 90 bp CTCCTGGGAGCAGACAGCTTTAACATCGTGAACAATCTCCTTGTCTaGAATGGTGCCCTCGCTGCTGGGTTCGGTTGGATTCTCCTCATT +
Preference number: 5 (lower is better)
Translates to: LLGADSFNIVNNLLV*NGALAAGFGWILLI
Trigger: AATGAGGAGAATCCAACCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTTCACGATGTTAAAGCTGTCTGCTCCCAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072634.15
ENSMUST00000213254.2
CDS GCA 90 bp CCTCAGCATCACCAGGCTGATAACGATGACCGTAGCAATGGCCACTaGGATAACCAGCAAGCCAATAAGGGCATTGCTGCTCAAACTGAA +
Preference number: 5 (lower is better)
Translates to: PQHHQADNDDRSNGH*DNQQANKGIAAQTE
Trigger: TTCAGTTTGAGCAGCAATGCCCTTATTGGCTTGCTGGTTATCGCAGTGGCCATTGCTACGGTCATCGTTATCAGCCTGGTGATGCTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS CCA 90 bp CGGCCTTTTCTGGGTCAACAGCCAACACGTGTTGGTAATGACGAATaGTATGCAGGCGATCTTTGTTCTCAGCACGGACGTAACGACGAA +
Preference number: 5 (lower is better)
Translates to: RPFLGQQPTRVGNDE*YAGDLCSQHGRNDE
Trigger: TTCGTCGTTACGTCCGTGCTGAGAACAAAGATCGCCTGCATACCATTCGTCATTACCAACACGTGTTGGCTGTTGACCCAGAAAAGGCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 90 bp ATGGAGGTGTGTCATCACCTGGGATTTCATCTGGGCGGCCTTTTCTaGGTCAACAGCCAACACGTGTTGGTAATGACGAATGGTATGCAG +
Preference number: 5 (lower is better)
Translates to: MEVCHHLGFHLGGLF*VNSQHVLVMTNGMQ
Trigger: CTGCATACCATTCGTCATTACCAACACGTGTTGGCTGTTGACCCAGAAAAGGCCGCCCAGATGAAATCCCAGGTGATGACACACCTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS TCA 90 bp CTGTTCCTTAGCCTTCTGGAAGCGGGCGTGCTCATTATCATCCGCTaGGGTCTCAAAATACACATCAACATCATTGGTTGGCAGGGGAGT +
Preference number: 5 (lower is better)
Translates to: LFLSLLEAGVLIIIR*GLKIHINIIGWQGS
Trigger: ACTCCCCTGCCAACCAATGATGTTGATGTGTATTTTGAGACCTCAGCGGATGATAATGAGCACGCCCGCTTCCAGAAGGCTAAGGAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS GCA 90 bp TTGTTCCAAGGCAGCTCTTGGTGCCTGTTGGGTCAGGCTCCCATTTaGCAGTCTGAATGTTCACATGCATATTCAGCTTCCCACAGAACA +
Preference number: 5 (lower is better)
Translates to: LFQGSSWCLLGQAPI*QSECSHAYSASHRT
Trigger: TGTTCTGTGGGAAGCTGAATATGCATGTGAACATTCAGACTGGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 90 bp CTGAAGAACCTCCTCCTTTGTTCCAAGGCAGCTCTTGGTGCCTGTTaGGTCAGGCTCCCATTTGCCAGTCTGAATGTTCACATGCATATT +
Preference number: 5 (lower is better)
Translates to: LKNLLLCSKAALGAC*VRLPFASLNVHMHI
Trigger: AATATGCATGTGAACATTCAGACTGGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAAGCTCTTGGTGCCTGTaGGGTCAGGCTCCCATTTGC +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSESSWCL*GQAPIC
Trigger: GCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTACGCTGCTGGGTTCGGTaGGATTCTCCTCATTGTAAT +
Preference number: 5 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLRCWVR*DSPHCN
Trigger: ATTACAATGAGGAGAATCCAACCGAACCCAGCAGCG...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS CCA 90 bp TCCATTCGGTTTCGATGTCGAATTTCCAGCTGTTCCTTAGCCTTCTaGAAGCGGGCGTGCTCATTATCATCCGCTGAGGTCTCAAAATAC +
Preference number: 5 (lower is better)
Translates to: SIRFRCRISSCSLAF*KRACSLSSAEVSKY
Trigger: GTATTTTGAGACCTCAGCGGATGATAATGAGCACGCCCGCTTCCAGAAGGCTAAGGAACAGCTGGAAATTCGACATCGAAACCGAATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCGTTCCAAGGCAGCTCTaGGTGCCTGTTGGGTCAGGC +
Preference number: 5 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTVPRQL*VPVGSG
Trigger: GCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAAC...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGCCGAGTCAACAGTCTTaGTCTGAGGGCAGCACACAT +
Preference number: 5 (lower is better)
Translates to: AKGCERELQLHSILQVHMPSQQS*SEGSTH
Trigger: ATGTGTGCTGCCCTCAGACAAAGACTGTTGACTCGG...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTCCGAGTCAACAGTCTTaGTCTGAGGGCAGCACACAT +
Preference number: 5 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPPSQQS*SEGSTH
Trigger: ATGTGTGCTGCCCTCAGACAAAGACTGTTGACTCGG...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGCGTACGCACTTTCCCTaGGAGAGGTCGAAGTACCAA +
Preference number: 5 (lower is better)
Translates to: AKGCERELQLHSILQVHMRTHFP*ERSKYQ
Trigger: TTGGTACTTCGACCTCTCCAAGGGAAAGTGCGTACG...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072634.15
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACATCAACATCATTGGTaGGCAGGGGAGTCGGGGGAA +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEHQHHW*AGESGE
Trigger: TTCCCCCGACTCCCCTGCCAACCAATGATGTTGATG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTTACACATCAACATCATaGGTTGGCAGGGGAGTCGGG +
Preference number: 5 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPYTSTS*VGRGVG
Trigger: CCCGACTCCCCTGCCAACCAATGATGTTGATGTGTA...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp ACATTGTCCTTTCATATGATGAAGCCTCCCGTGAACTCTCCTGGGTCCTCAGCCAGCTTTAACCATAGCTaGGAAATGCTGGATGAGGGT +
Preference number: 5 (lower is better)
Translates to: TLSFHMMKPPVNSPGSSASFNHS*EMLDEG
Trigger: ACCCTCATCCAGCATTTCCAAGCTATGGTTAAAGCT...GGCTGAGGACCCAGGAGAGTTCACGGGAGGCTTCATCATATGAAAGGACAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS GCA 90 bp CGATGTCGAATTTCCAGCTGTTCCTTAGCCTTCTGGAAGCGGGCGTaGTCATTATCATCCGCTGAGGTCTCAAAATACACATCAACATCA +
Preference number: 5 (lower is better)
Translates to: RCRISSCSLAFWKRA*SLSSAEVSKYTSTS
Trigger: TGATGTTGATGTGTATTTTGAGACCTCAGCGGATGATAATGAGCACGCCCGCTTCCAGAAGGCTAAGGAACAGCTGGAAATTCGACATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCAGCTCTTGGTGCCTGTaGGGTCAGGCTCCCATTTGC +
Preference number: 5 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTSSWCL*GQAPIC
Trigger: GCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCT...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAGAAGAACCTCCTCCTTaGTTCCAAGGCAGCTCTTGG +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEEEPPP*FQGSSW
Trigger: CCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTC...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACACCTCCATCCGCTCTaGGTGGAAAAACTGGCAGTT +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEHLHPL*VEKLAV
Trigger: AACTGCCAGTTTTTCCACCAAGAGCGGATGGAGGTG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTCGCTGCTGGGTTCGGTaGGATTCTCCTCATTGTAAT +
Preference number: 5 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPRCWVR*DSPHCN
Trigger: ATTACAATGAGGAGAATCCAACCGAACCCAGCAGCG...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AGGTGGGTGCACGCTTGGATACACTTGGTAAGGGAAGTGGATAGGAAAAGGCTAAACAGCCAACACGTGTaGGTAATGACGAATGGTATG +
Preference number: 5 (lower is better)
Translates to: RWVHAWIHLVREVDRKRLNSQHV*VMTNGM
Trigger: CATACCATTCGTCATTACCAACACGTGTTGGCTGTT...TAGCCTTTTCCTATCCACTTCCCTTACCAAGTGTATCCAAGCGTGCACCCACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAGATGGAGGAGGTAAATaGGTCCATATCCGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEDGGGK*VHIRSL
Trigger: CAGCGAGCGGATATGGACCAATTTACCTCCTCCATC...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACGCTGCTGGGTTCGGTaGGATTCTCCTCATTGTAAT +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSERCWVR*DSPHCN
Trigger: ATTACAATGAGGAGAATCCAACCGAACCCAGCAGCG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCCTCTTGCACTGCCTTTaGTCCCTTCGGCACCAACTA +
Preference number: 5 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTLLHCL*SLRHQL
Trigger: TAGTTGGTGCCGAAGGGACAAAAGGCAGTGCAAGAG...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCTCCTCAGACTCAAAATaGTTCCTGTTGCCGCCGCAG +
Preference number: 5 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTSSDSK*FLLPPQ
Trigger: CTGCGGCGGCAACAGGAACAATTTTGAGTCTGAGGA...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072634.15
CDS-3UTR CAA 90 bp CAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCTACACATCAACATCATaGGTTGGCAGGGGAGTCGGG +
Preference number: 5 (lower is better)
Translates to: QTLSNVSTVSTDPISCTTYTSTS*VGRGVG
Trigger: CCCGACTCCCCTGCCAACCAATGATGTTGATGTGTA...GGTTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAAGCTTTAACCATAGCTaGGAAATGCTGGATGAGGGT +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSESFNHS*EMLDEG
Trigger: ACCCTCATCCAGCATTTCCAAGCTATGGTTAAAGCT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAAAACAGCCAACACGTGTaGGTAATGACGAATGGTATG +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSENSQHV*VMTNGM
Trigger: CATACCATTCGTCATTACCAACACGTGTTGGCTGTT...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GCGGAGACTATGCCTAAAGCAGTCAGTAACTGCATACAATGTACTTCAGCTCCTCCAGGTATTTGTAGGTaGGGTTTTCATAACCATGGT +
Preference number: 5 (lower is better)
Translates to: AETMPKAVSNCIQCTSAPPGICR*GFHNHG
Trigger: ACCATGGTTATGAAAACCCAACCTACAAATACCTGG...AGGAGCTGAAGTACATTGTATGCAGTTACTGACTGCTTTAGGCATAGTCTCCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGCCAGGTATTTGTAGGTaGGGTTTTCATAACCATGGT +
Preference number: 5 (lower is better)
Translates to: AKGCERELQLHSILQVHMPGICR*GFHNHG
Trigger: ACCATGGTTATGAAAACCCAACCTACAAATACCTGG...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAGAAGAACCTCCTCCTTaGTTCCAAGGCAGCTCTTGG +
Preference number: 5 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQEEPPP*FQGSSW
Trigger: CCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTC...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACACCTCCATCCGCTCTaGGTGGAAAAACTGGCAGTT +
Preference number: 5 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQHLHPL*VEKLAV
Trigger: AACTGCCAGTTTTTCCACCAAGAGCGGATGGAGGTG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAAGATGGAGGAGGTAAATaGGTCCATATCCGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQDGGGK*VHIRSL
Trigger: CAGCGAGCGGATATGGACCAATTTACCTCCTCCATC...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACCAGGTATTTGTAGGTaGGGTTTTCATAACCATGGT +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEPGICR*GFHNHG
Trigger: ACCATGGTTATGAAAACCCAACCTACAAATACCTGG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GCTAAAGGCTGTGAGCGTGAACTCCAGCTACACAGCATTTTACAGGTTCATATGCCAACTCTCTCAGCATaGAAAATCATTTCCTTAACA +
Preference number: 5 (lower is better)
Translates to: AKGCERELQLHSILQVHMPTLSA*KIISLT
Trigger: TGTTAAGGAAATGATTTTCAATGCTGAGAGAGTTGG...CATATGAACCTGTAAAATGCTGTGTAGCTGGAGTTCACGCTCACAGCCTTTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS TCA 90 bp TCACTTACAAATTCACCCACAAGACACTTGAATGGTATAACAATGTaGCTCTTGCACTGCCTTTTGTCCCTTCGGCACCAACTATCAATA +
Preference number: 5 (lower is better)
Translates to: SLTNSPTRHLNGITM*LLHCLLSLRHQLSI
Trigger: TATTGATAGTTGGTGCCGAAGGGACAAAAGGCAGTGCAAGAGTCACATTGTTATACCATTCAAGTGTCTTGTGGGTGAATTTGTAAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp GACTATGGGCTAGTTGCTGTGGAAGAACTGGATTTGAAAGGAAAGCACAGTGAACCAACTCTCTCAGCATaGAAAATCATTTCCTTAACA +
Preference number: 5 (lower is better)
Translates to: DYGLVAVEELDLKGKHSEPTLSA*KIISLT
Trigger: TGTTAAGGAAATGATTTTCAATGCTGAGAGAGTTGG...TTCACTGTGCTTTCCTTTCAAATCCAGTTCTTCCACAGCAACTAGCCCATAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS-3UTR CAA 90 bp AACAAACACTTTCAAACGTTTCCACAGTGTCTACAGATCCAATTTCATGCACAACCAACTCTCTCAGCATaGAAAATCATTTCCTTAACA +
Preference number: 5 (lower is better)
Translates to: NKHFQTFPQCLQIQFHAQPTLSA*KIISLT
Trigger: TGTTAAGGAAATGATTTTCAATGCTGAGAGAGTTGG...TTGTGCATGAAATTGGATCTGTAGACACTGTGGAAACGTTTGAAAGTGTTTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS CAA 72 bp GGCGCCGTGAGCCCGAGCAGCAGCAGGACAAGAAGCTaGCCGGTGGCCGCAGCGGCCGCGGTCCCGGTGGCC +
Preference number: 6 (lower is better)
Translates to: GAVSPSSSRTRS*PVAAAAAVPVA
Trigger: GGCCACCGGGACCGCGGCCGCTGCGGCCACCGGCAAGCTTCTTGTCCTGCTGCTGCTCGGGCTCACGGCGCC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS TCA 72 bp CCTCTATGTAGCCAGCCAGAGCCGCAGCGGGCGCCGTaGGCCCGAGCAGCAGCAGGACAAGAAGCTTGCCGG +
Preference number: 6 (lower is better)
Translates to: PLCSQPEPQRAP*ARAAAGQEACR
Trigger: CCGGCAAGCTTCTTGTCCTGCTGCTGCTCGGGCTCACGGCGCCCGCTGCGGCTCTGGCTGGCTACATAGAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 90 bp CTGTTGCCGCCGCAGCCGCCATATATAAAGCGTACGCACTTTCCCTaGGAGAGGTCGAAGTACCAACGAGGCATCACAGCCCGGCAGGGC +
Preference number: 6 (lower is better)
Translates to: LLPPQPPYIKRTHFP*ERSKYQRGITARQG
Trigger: GCCCTGCCGGGCTGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGCGTACGCTTTATATATGGCGGCTGCGGCGGCAACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072634.15
ENSMUST00000213254.2
CDS GCA 72 bp AGCCCCTCAGTCAGACATGCCTCCTTGACTAACGTGTaGCAGCGCTGGTGCTTCTCACACACCTCCATCCGC +
Preference number: 6 (lower is better)
Translates to: SPSVRHASLTNV*QRWCFSHTSIR
Trigger: GCGGATGGAGGTGTGTGAGAAGCACCAGCGCTGGCACACGTTAGTCAAGGAGGCATGTCTGACTGAGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS GCA 72 bp TCTCAGCACGGACGTAACGACGAAGAGCTTGAAGAATaGGATGTGGCCGAGGTGGGTCAGACTGCAGGGCAG +
Preference number: 6 (lower is better)
Translates to: SQHGRNDEELEE*DVAEVGQTAGQ
Trigger: CTGCCCTGCAGTCTGACCCACCTCGGCCACATCGCATTCTTCAAGCTCTTCGTCGTTACGTCCGTGCTGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 72 bp ACGGACGTAACGACGAAGAGCTTGAAGAATGCGATGTaGCCGAGGTGGGTCAGACTGCAGGGCAGCCAGGTA +
Preference number: 6 (lower is better)
Translates to: TDVTTKSLKNAM*PRWVRLQGSQV
Trigger: TACCTGGCTGCCCTGCAGTCTGACCCACCTCGGCCACATCGCATTCTTCAAGCTCTTCGTCGTTACGTCCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 72 bp TCTGGGGTGAGCATTGGGTCAACCTCCACAATCCCGTaGCTGATGGTGCCGTACTGCCTCTTCCTCAGCATC +
Preference number: 6 (lower is better)
Translates to: SGVSIGSTSTIP*LMVPYCLFLSI
Trigger: GATGCTGAGGAAGAGGCAGTACGGCACCATCAGCCACGGGATTGTGGAGGTTGACCCAATGCTCACCCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS CAA 90 bp ATGCAGGCGATCTTTGTTCTCAGCACGGACGTAACGACGAAGAGCTaGAAGAATGCGATGTGGCCGAGGTGGGTCAGACTGCAGGGCAGC +
Preference number: 6 (lower is better)
Translates to: MQAIFVLSTDVTTKS*KNAMWPRWVRLQGS
Trigger: GCTGCCCTGCAGTCTGACCCACCTCGGCCACATCGCATTCTTCAAGCTCTTCGTCGTTACGTCCGTGCTGAGAACAAAGATCGCCTGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS GCA 72 bp TGCCATGGAACTGGTCTACCCCGCAGGGCAGCAGCATaGCATAGCTATATAAGGTCAGCCCCTCAGTCAGAC +
Preference number: 6 (lower is better)
Translates to: CHGTGLPRRAAA*HSYIRSAPQSD
Trigger: GTCTGACTGAGGGGCTGACCTTATATAGCTATGGCATGCTGCTGCCCTGCGGGGTAGACCAGTTCCATGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS TCA 72 bp CTCCTCAGAGCTCACCCGGACATCCACAGGGTTCTCTaGGATGGAGGAGGTAAATTGGTCCATATCCGCTCG +
Preference number: 6 (lower is better)
Translates to: LLRAHPDIHRVL*DGGGKLVHIRS
Trigger: CGAGCGGATATGGACCAATTTACCTCCTCCATCTCAGAGAACCCTGTGGATGTCCGGGTGAGCTCTGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS GCA 72 bp AGACATGCCTCCTTGACTAACGTGTGCCAGCGCTGGTaGTTCTCACACACCTCCATCCGCTCTTGGTGGAAA +
Preference number: 6 (lower is better)
Translates to: RHASLTNVCQRW*FSHTSIRSWWK
Trigger: TTTCCACCAAGAGCGGATGGAGGTGTGTGAGAAGCACCAGCGCTGGCACACGTTAGTCAAGGAGGCATGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 72 bp CCGCAGCCGCCATATATAAAGCGTACGCACTTTCCCTaGGAGAGGTCGAAGTACCAACGAGGCATCACAGCC +
Preference number: 6 (lower is better)
Translates to: PQPPYIKRTHFP*ERSKYQRGITA
Trigger: GGCTGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGCGTACGCTTTATATATGGCGGCTGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072634.15
ENSMUST00000213254.2
CDS GCA 72 bp GAAGAACCTCCTCCTTTGTTCCAAGGCAGCTCTTGGTaGCTGTTGGGTCAGGCTCCCATTTGCCAGTCTGAA +
Preference number: 6 (lower is better)
Translates to: EEPPPLFQGSSW*LLGQAPICQSE
Trigger: TTCAGACTGGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 72 bp CTCCTCCTTTGTTCCAAGGCAGCTCTTGGTGCCTGTTaGGTCAGGCTCCCATTTGCCAGTCTGAATGTTCAC +
Preference number: 6 (lower is better)
Translates to: LLLCSKAALGAC*VRLPFASLNVH
Trigger: GTGAACATTCAGACTGGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 72 bp ACTGAAGAACCTCCTCCTTTGTTCCAAGGCAGCTCTTaGTGCCTGTTGGGTCAGGCTCCCATTTGCCAGTCT +
Preference number: 6 (lower is better)
Translates to: TEEPPPLFQGSS*CLLGQAPICQS
Trigger: AGACTGGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 72 bp ACCATGGTTCTGCATCTTGTTCAGGTGACGCTCTTCTaGGGTGAGCATTGGGTCAACCTCCACAATCCCGTG +
Preference number: 6 (lower is better)
Translates to: TMVLHLVQVTLF*GEHWVNLHNPV
Trigger: CACGGGATTGTGGAGGTTGACCCAATGCTCACCCCAGAAGAGCGTCACCTGAACAAGATGCAGAACCATGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS CAA 72 bp CTATATAAGGTCAGCCCCTCAGTCAGACATGCCTCCTaGACTAACGTGTGCCAGCGCTGGTGCTTCTCACAC +
Preference number: 6 (lower is better)
Translates to: LYKVSPSVRHAS*TNVCQRWCFSH
Trigger: GTGTGAGAAGCACCAGCGCTGGCACACGTTAGTCAAGGAGGCATGTCTGACTGAGGGGCTGACCTTATATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 90 bp GCAGCTCTGGATATATCTCCTGGCAGTACTGAAGAACCTCCTCCTTaGTTCCAAGGCAGCTCTTGGTGCCTGTTGGGTCAGGCTCCCATT +
Preference number: 6 (lower is better)
Translates to: AALDISPGSTEEPPP*FQGSSWCLLGQAPI
Trigger: AATGGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTCAGTACTGCCAGGAGATATATCCAGAGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 72 bp ATCTTTGTTCTCAGCACGGACGTAACGACGAAGAGCTaGAAGAATGCGATGTGGCCGAGGTGGGTCAGACTG +
Preference number: 6 (lower is better)
Translates to: IFVLSTDVTTKS*KNAMWPRWVRL
Trigger: CAGTCTGACCCACCTCGGCCACATCGCATTCTTCAAGCTCTTCGTCGTTACGTCCGTGCTGAGAACAAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 90 bp GGATTTCATCTGGGCGGCCTTTTCTGGGTCAACAGCCAACACGTGTaGGTAATGACGAATGGTATGCAGGCGATCTTTGTTCTCAGCACG +
Preference number: 6 (lower is better)
Translates to: GFHLGGLFWVNSQHV*VMTNGMQAIFVLST
Trigger: CGTGCTGAGAACAAAGATCGCCTGCATACCATTCGTCATTACCAACACGTGTTGGCTGTTGACCCAGAAAAGGCCGCCCAGATGAAATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 90 bp ACCGTAGCAATGGCCACTGCGATAACCAGCAAGCCAATAAGGGCATaGCTGCTCAAACTGAAATCCTCCCTTAAAGGTCCCACCGATTCC +
Preference number: 6 (lower is better)
Translates to: TVAMATAITSKPIRA*LLKLKSSLKGPTDS
Trigger: GGAATCGGTGGGACCTTTAAGGGAGGATTTCAGTTTGAGCAGCAATGCCCTTATTGGCTTGCTGGTTATCGCAGTGGCCATTGCTACGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS TCA 72 bp CGGGGGAACTTTAACATCGTGAACAATCTCCTTGTCTaGAATGGTGCCCTCGCTGCTGGGTTCGGTTGGATT +
Preference number: 6 (lower is better)
Translates to: RGNFNIVNNLLV*NGALAAGFGWI
Trigger: AATCCAACCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTTCACGATGTTAAAGTTCCCCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS CCA 72 bp TTTCGATGTCGAATTTCCAGCTGTTCCTTAGCCTTCTaGAAGCGGGCGTGCTCATTATCATCCGCTGAGGTC +
Preference number: 6 (lower is better)
Translates to: FRCRISSCSLAF*KRACSLSSAEV
Trigger: GACCTCAGCGGATGATAATGAGCACGCCCGCTTCCAGAAGGCTAAGGAACAGCTGGAAATTCGACATCGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 72 bp CTGGGTCAACAGCCAACACGTGTTGGTAATGACGAATaGTATGCAGGCGATCTTTGTTCTCAGCACGGACGT +
Preference number: 6 (lower is better)
Translates to: LGQQPTRVGNDE*YAGDLCSQHGR
Trigger: ACGTCCGTGCTGAGAACAAAGATCGCCTGCATACCATTCGTCATTACCAACACGTGTTGGCTGTTGACCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 72 bp GATATATCTCCTGGCAGTACTGAAGAACCTCCTCCTTaGTTCCAAGGCAGCTCTTGGTGCCTGTTGGGTCAG +
Preference number: 6 (lower is better)
Translates to: DISPGSTEEPPP*FQGSSWCLLGQ
Trigger: CTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTCAGTACTGCCAGGAGATATATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 72 bp CTGGGCGGCCTTTTCTGGGTCAACAGCCAACACGTGTaGGTAATGACGAATGGTATGCAGGCGATCTTTGTT +
Preference number: 6 (lower is better)
Translates to: LGGLFWVNSQHV*VMTNGMQAIFV
Trigger: AACAAAGATCGCCTGCATACCATTCGTCATTACCAACACGTGTTGGCTGTTGACCCAGAAAAGGCCGCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 90 bp ACTGAAGAACCTCCTCCTTTGTTCCAAGGCAGCTCTTGGTGCCTGTaGGGTCAGGCTCCCATTTGCCAGTCTGAATGTTCACATGCATAT +
Preference number: 6 (lower is better)
Translates to: TEEPPPLFQGSSWCL*GQAPICQSECSHAY
Trigger: ATATGCATGTGAACATTCAGACTGGCAAATGGGAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS TCA 72 bp GTGATCTGCAGCTCTGGATATATCTCCTGGCAGTACTaGAGAACCTCCTCCTTTGTTCCAAGGCAGCTCTTG +
Preference number: 6 (lower is better)
Translates to: VICSSGYISWQY*RTSSFVPRQLL
Trigger: CAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTCAGTACTGCCAGGAGATATATCCAGAGCTGCAGATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS TCA 72 bp GCAGACAGCTTTAACATCGTGAACAATCTCCTTGTCTaGAATGGTGCCCTCGCTGCTGGGTTCGGTTGGATT +
Preference number: 6 (lower is better)
Translates to: ADSFNIVNNLLV*NGALAAGFGWI
Trigger: AATCCAACCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTTCACGATGTTAAAGCTGTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072634.15
ENSMUST00000213254.2
CDS GCA 72 bp CGTGAACAATCTCCTTGTCTGAAATGGTGCCCTCGCTaGTGGGTTCGGTTGGATTCTCCTCATTGTAATCGT +
Preference number: 6 (lower is better)
Translates to: REQSPCLKWCPR*WVRLDSPHCNR
Trigger: ACGATTACAATGAGGAGAATCCAACCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTTCACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 72 bp GAACAATCTCCTTGTCTGAAATGGTGCCCTCGCTGCTaGGTTCGGTTGGATTCTCCTCATTGTAATCGTCTC +
Preference number: 6 (lower is better)
Translates to: EQSPCLKWCPRC*VRLDSPHCNRL
Trigger: GAGACGATTACAATGAGGAGAATCCAACCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CCA 72 bp TGTCATCACCTGGGATTTCATCTGGGCGGCCTTTTCTaGGTCAACAGCCAACACGTGTTGGTAATGACGAAT +
Preference number: 6 (lower is better)
Translates to: CHHLGFHLGGLF*VNSQHVLVMTN
Trigger: ATTCGTCATTACCAACACGTGTTGGCTGTTGACCCAGAAAAGGCCGCCCAGATGAAATCCCAGGTGATGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 72 bp ATGGCCACTGCGATAACCAGCAAGCCAATAAGGGCATaGCTGCTCAAACTGAAATCCTCCCTTAAAGGTCCC +
Preference number: 6 (lower is better)
Translates to: MATAITSKPIRA*LLKLKSSLKGP
Trigger: GGGACCTTTAAGGGAGGATTTCAGTTTGAGCAGCAATGCCCTTATTGGCTTGCTGGTTATCGCAGTGGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS TCA 72 bp AGCCTTCTGGAAGCGGGCGTGCTCATTATCATCCGCTaGGGTCTCAAAATACACATCAACATCATTGGTTGG +
Preference number: 6 (lower is better)
Translates to: SLLEAGVLIIIR*GLKIHINIIGW
Trigger: CCAACCAATGATGTTGATGTGTATTTTGAGACCTCAGCGGATGATAATGAGCACGCCCGCTTCCAGAAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS GCA 72 bp ATTTCCAGCTGTTCCTTAGCCTTCTGGAAGCGGGCGTaGTCATTATCATCCGCTGAGGTCTCAAAATACACA +
Preference number: 6 (lower is better)
Translates to: ISSCSLAFWKRA*SLSSAEVSKYT
Trigger: TGTGTATTTTGAGACCTCAGCGGATGATAATGAGCACGCCCGCTTCCAGAAGGCTAAGGAACAGCTGGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 90 bp CCCACCGATTCCGGCTCTTCCTCAAGGCCTCCAACTCTCTCAGCATaGAAAATCATTTCCTTAACATCCAGAGTCTCGTCAATGACCATA +
Preference number: 6 (lower is better)
Translates to: PTDSGSSSRPPTLSA*KIISLTSRVSSMTI
Trigger: TATGGTCATTGACGAGACTCTGGATGTTAAGGAAATGATTTTCAATGCTGAGAGAGTTGGAGGCCTTGAGGAAGAGCCGGAATCGGTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS CAA 72 bp TCCGGCTCTTCCTCAAGGCCTCCAACTCTCTCAGCATaGAAAATCATTTCCTTAACATCCAGAGTCTCGTCA +
Preference number: 6 (lower is better)
Translates to: SGSSSRPPTLSA*KIISLTSRVSS
Trigger: TGACGAGACTCTGGATGTTAAGGAAATGATTTTCAATGCTGAGAGAGTTGGAGGCCTTGAGGAAGAGCCGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000217641.2
CDS GCA 72 bp GCTTCTTTCTCTAAAGCTTTAACCATAGCTTGGAAATaGTGGATGAGGGTCTGTCTTTCTGTCTTGGGGAGG +
Preference number: 6 (lower is better)
Translates to: ASFSKALTIAWK*WMRVCLSVLGR
Trigger: CCTCCCCAAGACAGAAAGACAGACCCTCATCCAGCATTTCCAAGCTATGGTTAAAGCTTTAGAGAAAGAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS CAA 72 bp CACTGCCTTTTGTCCCTTCGGCACCAACTATCAATATaGACTGGCTGGTTTGCTTCCATCACATTTGTGATC +
Preference number: 6 (lower is better)
Translates to: HCLLSLRHQLSI*TGWFASITFVI
Trigger: GATCACAAATGTGATGGAAGCAAACCAGCCAGTCAATATTGATAGTTGGTGCCGAAGGGACAAAAGGCAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2
CDS TCA 72 bp AATTCACCCACAAGACACTTGAATGGTATAACAATGTaGCTCTTGCACTGCCTTTTGTCCCTTCGGCACCAA +
Preference number: 6 (lower is better)
Translates to: NSPTRHLNGITM*LLHCLLSLRHQ
Trigger: TTGGTGCCGAAGGGACAAAAGGCAGTGCAAGAGTCACATTGTTATACCATTCAAGTGTCTTGTGGGTGAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
ENSMUST00000217641.2