Pregenerated sensors for APLN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037010Ensembl transcript IDs: ENSMUST00000039026.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCGCCAGCCAGCTCCCACTTCTAGCCCAAGAGGTGAGGACGCTATaGCTGGCCCTGCTCCCCAGGGTGGGCCTTGAAACGGCAGCAGAG | + |
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Preference number: 1 (lower is better) Translates to: GASQLPLLAQEVRTL*LALLPRVGLETAAE Trigger: CTCTGCTGCCGTTTCAAGGCCCACCCTGGGGAGCAGGGCCAGGCATAGCGTCCTCACCTCTTGGGCTAGAAGTGGGAGCTGGCTGGCGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR TCA 90 bp | AAGATGAGGGTCTCCCTTCAGGGAAGGGCTACAAAAGGCTCCTGGTaGGAGATGAGACCCCCTTGGTGGAGTGATAGATCCCACCTACAC | + |
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Preference number: 1 (lower is better) Translates to: KMRVSLQGRATKGSW*EMRPPWWSDRSHLH Trigger: GTGTAGGTGGGATCTATCACTCCACCAAGGGGGTCTCATCTCTCACCAGGAGCCTTTTGTAGCCCTTCCCTGAAGGGAGACCCTCATCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 90 bp | GAACAGGTCAAGGAGAAGCTGGGTCTCCAAGGGCAGTCCAAAGAGTaGCCAGGAGGATGGGCCAAAGGGATCCTTGTGAGAGGAATGAAA | + |
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Preference number: 1 (lower is better) Translates to: EQVKEKLGLQGQSKE*PGGWAKGILVRGMK Trigger: TTTCATTCCTCTCACAAGGATCCCTTTGGCCCATCCTCCTGGCCACTCTTTGGACTGCCCTTGGAGACCCAGCTTCTCCTTGACCTGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR GCA 90 bp | GCTCCATTCTCACACAAAGCAGTTCACAGCTGGCTTGTCTCTCCCTaGTCTTCCTTCCTAGCCACCCGCTTCACTAAACCCAGCAAAAGG | + |
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Preference number: 1 (lower is better) Translates to: APFSHKAVHSWLVSP*SSFLATRFTKPSKR Trigger: CCTTTTGCTGGGTTTAGTGAAGCGGGTGGCTAGGAAGGAAGAGCAGGGAGAGACAAGCCAGCTGTGAACTGCTTTGTGTGAGAATGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 90 bp | TGTGTGGGGTACATTTCACCACTTAGGGACTATTCCGGGCCACGTTaGGAGGGAGATGCTCCATTCTCACACAAAGCAGTTCACAGCTGG | + |
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Preference number: 1 (lower is better) Translates to: CVGYISPLRDYSGPR*EGDAPFSHKAVHSW Trigger: CCAGCTGTGAACTGCTTTGTGTGAGAATGGAGCATCTCCCTCCCAACGTGGCCCGGAATAGTCCCTAAGTGGTGAAATGTACCCCACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 90 bp | CCCTTCCAGGCAAGAGGTCCAATTGATAAGAAAGCATGGATGTGCTaGAATCCACTGGAGAAGGGAGTGTTCTTGTCCAGTGCCCAAGGC | + |
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Preference number: 1 (lower is better) Translates to: PFQARGPIDKKAWMC*NPLEKGVFLSSAQG Trigger: GCCTTGGGCACTGGACAAGAACACTCCCTTCTCCAGTGGATTCCAGCACATCCATGCTTTCTTATCAATTGGACCTCTTGCCTGGAAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 90 bp | CTCGGCGCTCCCTTCCAGGCAAGAGGTCCAATTGATAAGAAAGCATaGATGTGCTGGAATCCACTGGAGAAGGGAGTGTTCTTGTCCAGT | + |
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Preference number: 1 (lower is better) Translates to: LGAPFQARGPIDKKA*MCWNPLEKGVFLSS Trigger: ACTGGACAAGAACACTCCCTTCTCCAGTGGATTCCAGCACATCCATGCTTTCTTATCAATTGGACCTCTTGCCTGGAAGGGAGCGCCGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR TCA 90 bp | AATCCACTGGAGAAGGGAGTGTTCTTGTCCAGTGCCCAAGGCAAATaGAAAGAGGGAAGAGCCAAGAGAAGGCTACGGCTGAAAGATAGG | + |
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Preference number: 1 (lower is better) Translates to: NPLEKGVFLSSAQGK*KEGRAKRRLRLKDR Trigger: CCTATCTTTCAGCCGTAGCCTTCTCTTGGCTCTTCCCTCTTTTCATTTGCCTTGGGCACTGGACAAGAACACTCCCTTCTCCAGTGGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 90 bp | AGCTTGTGGCAAATCAGTTTGAGGCCAGTTGACCTAGAACCAATTTaGGATACAAGCACTCACCTCCCTACACGTGCAATCTGTGGGCAC | + |
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Preference number: 1 (lower is better) Translates to: SLWQISLRPVDLEPI*DTSTHLPTRAICGH Trigger: GTGCCCACAGATTGCACGTGTAGGGAGGTGAGTGCTTGTATCCCAAATTGGTTCTAGGTCAACTGGCCTCAAACTGATTTGCCACAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR TCA 90 bp | AGCGAGTCTTTTTGTGAGCTTGTGGCAAATCAGTTTGAGGCCAGTTaGCCTAGAACCAATTTGGGATACAAGCACTCACCTCCCTACACG | + |
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Preference number: 1 (lower is better) Translates to: SESFCELVANQFEAS*PRTNLGYKHSPPYT Trigger: CGTGTAGGGAGGTGAGTGCTTGTATCCCAAATTGGTTCTAGGTCAACTGGCCTCAAACTGATTTGCCACAAGCTCACAAAAAGACTCGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR TCA 90 bp | CTCTCCAGGGCCTATTTGTGCAAGCTTTTGCATAAGGGAGCTAAGTaGTCTTCAAGGGTCCTTTGGGCTCTGACTTTCTGTGGGTTATTT | + |
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Preference number: 1 (lower is better) Translates to: LSRAYLCKLLHKGAK*SSRVLWALTFCGLF Trigger: AAATAACCCACAGAAAGTCAGAGCCCAAAGGACCCTTGAAGATCACTTAGCTCCCTTATGCAAAAGCTTGCACAAATAGGCCCTGGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 90 bp | CAAGAGGTCCAATTGATAAGAAAGCATGGATGTGCTGGAATCCACTaGAGAAGGGAGTGTTCTTGTCCAGTGCCCAAGGCAAATGAAAAG | + |
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Preference number: 1 (lower is better) Translates to: QEVQLIRKHGCAGIH*RRECSCPVPKANEK Trigger: CTTTTCATTTGCCTTGGGCACTGGACAAGAACACTCCCTTCTCCAGTGGATTCCAGCACATCCATGCTTTCTTATCAATTGGACCTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 90 bp | TATGTGAACTGGCCCTTAAGCATAGCGAGTCTTTTTGTGAGCTTGTaGCAAATCAGTTTGAGGCCAGTTGACCTAGAACCAATTTGGGAT | + |
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Preference number: 1 (lower is better) Translates to: YVNWPLSIASLFVSL*QISLRPVDLEPIWD Trigger: ATCCCAAATTGGTTCTAGGTCAACTGGCCTCAAACTGATTTGCCACAAGCTCACAAAAAGACTCGCTATGCTTAAGGGCCAGTTCACATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR GCA 90 bp | AAGGCAGGAGGTGCAGAAACGACAAAGACGGAGAAGGCCCGGTCCCTGGTAGGGCGCTATGCCTGGCCCTaGTCCCCAGGGTGGGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: KAGGAETTKTEKARSLVGRYAWP*SPGWAL Trigger: CAAGGCCCACCCTGGGGAGCAGGGCCAGGCATAGCG...CCCTACCAGGGACCGGGCCTTCTCCGTCTTTGTCGTTTCTGCACCTCCTGCCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR GCA 90 bp | AAGGCAGGAGGTGCAGAAACGACAAAGACGGAGAAGGCCCGGTCCCTGGTAGGGATTCAGTTTCCCCAGTaGACCTTATCTGGACCCCAA | + |
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Preference number: 2 (lower is better) Translates to: KAGGAETTKTEKARSLVGIQFPQ*TLSGPQ Trigger: TTGGGGTCCAGATAAGGTGCACTGGGGAAACTGAAT...CCCTACCAGGGACCGGGCCTTCTCCGTCTTTGTCGTTTCTGCACCTCCTGCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR TCA 90 bp | TCCAAAGAGTGGCCAGGAGGATGGGCCAAAGGGATCCTTGTGAGAGGAATGAAAGAGGAACTTGGTGGGTaGGAAGAGCCGGGACCATCA | + |
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Preference number: 2 (lower is better) Translates to: SKEWPGGWAKGILVRGMKEELGG*EEPGPS Trigger: TGATGGTCCCGGCTCTTCTCACCCACCAAGTTCCTC...TTTCATTCCTCTCACAAGGATCCCTTTGGCCCATCCTCCTGGCCACTCTTTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR GCA 90 bp | AAGGCAGGAGGTGCAGAAACGACAAAGACGGAGAAGGCCCGGTCCCTGGTAGGGTCTGAGAAGAACATGTaGTCAGGCAGAGAAGATGAG | + |
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Preference number: 2 (lower is better) Translates to: KAGGAETTKTEKARSLVGSEKNM*SGREDE Trigger: CTCATCTTCTCTGCCTGAGCACATGTTCTTCTCAGA...CCCTACCAGGGACCGGGCCTTCTCCGTCTTTGTCGTTTCTGCACCTCCTGCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTCCATTCTCACACAAAGCAGTTCACAGCTGGCTTGTCTCTCCCTGCTCTTCGAGTGGCCAGGAGGATaGGCCAAAGGGATCCTTGTG | + |
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Preference number: 2 (lower is better) Translates to: CSILTQSSSQLACLSLLFEWPGG*AKGILV Trigger: CACAAGGATCCCTTTGGCCCATCCTCCTGGCCACTC...GAAGAGCAGGGAGAGACAAGCCAGCTGTGAACTGCTTTGTGTGAGAATGGAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CAA 90 bp | GTCTCATTGCACATCTCGGCGCTCCCTTCCAGGCAAGAGGTCCAATaGATAAGAAAGCATGGATGTGCTGGAATCCACTGGAGAAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: VSLHISALPSRQEVQ*IRKHGCAGIHWRRE Trigger: CTCCCTTCTCCAGTGGATTCCAGCACATCCATGCTTTCTTATCAATTGGACCTCTTGCCTGGAAGGGAGCGCCGAGATGTGCAATGAGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | AAGGCAGGAGGTGCAGAAACGACAAAGACGGAGAAGGCCCGGTCCCTGGTAGGGGGTTATTTGGTTGGTTaGTTGATTGGTTGGGATTAT | + |
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Preference number: 2 (lower is better) Translates to: KAGGAETTKTEKARSLVGGYLVG*LIGWDY Trigger: ATAATCCCAACCAATCAACCAACCAACCAAATAACC...CCCTACCAGGGACCGGGCCTTCTCCGTCTTTGTCGTTTCTGCACCTCCTGCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR GCA 90 bp | TGGCATGAGCCTGGGAATAGGCCTGTGTGGGGTACATTTCACCACTTAGGGACTTCCAGGGCCTATTTGTaGAAGCTTTTGCATAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: WHEPGNRPVWGTFHHLGTSRAYL*KLLHKG Trigger: TCCCTTATGCAAAAGCTTGCACAAATAGGCCCTGGA...AGTCCCTAAGTGGTGAAATGTACCCCACACAGGCCTATTCCCAGGCTCATGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | GACAGCCCACTGGGCCCGTTTACTCCCCTCTTGTGCTTCTATCTCTCCTCTTTCTGTGGGTTATTTGGTTaGTTGGTTGATTGGTTGGGA | + |
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Preference number: 2 (lower is better) Translates to: DSPLGPFTPLLCFYLSSFCGLFG*LVDWLG Trigger: TCCCAACCAATCAACCAACCAACCAAATAACCCACA...GAAAGAGGAGAGATAGAAGCACAAGAGGGGAGTAAACGGGCCCAGTGGGCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR TCA 90 bp | TGGCATGAGCCTGGGAATAGGCCTGTGTGGGGTACATTTCACCACTTAGGGACTAGAACAGGTGCAAGATaGAAGCCAAATAGATGTGAG | + |
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Preference number: 2 (lower is better) Translates to: WHEPGNRPVWGTFHHLGTRTGAR*KPNRCE Trigger: CTCACATCTATTTGGCTTTCATCTTGCACCTGTTCT...AGTCCCTAAGTGGTGAAATGTACCCCACACAGGCCTATTCCCAGGCTCATGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR GCA 90 bp | ATGTGCTCAGGCAGAGAAGATGAGGGTCTCCCTTCAGGGAAGGGCTACAAAAGGAGTGTTCTTGTCCAGTaGCCAAGGCAAATGAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: MCSGREDEGLPSGKGYKRSVLVQ*PRQMKR Trigger: TCTTTTCATTTGCCTTGGGCACTGGACAAGAACACT...CCTTTTGTAGCCCTTCCCTGAAGGGAGACCCTCATCTTCTCTGCCTGAGCACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTCCATTCTCACACAAAGCAGTTCACAGCTGGCTTGTCTCTCCCTGCTCTTCAAGAAAGCATGGATGTaGTGGAATCCACTGGAGAAG | + |
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Preference number: 2 (lower is better) Translates to: CSILTQSSSQLACLSLLFKKAWM*WNPLEK Trigger: CTTCTCCAGTGGATTCCAGCACATCCATGCTTTCTT...GAAGAGCAGGGAGAGACAAGCCAGCTGTGAACTGCTTTGTGTGAGAATGGAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | AATTTATGTGAACTGGCCCTTAAGCATAGCGAGTCTTTTTGTGAGCTTGTGGCAGGGCAGTCCAAAGAGTaGCCAGGAGGATGGGCCAAA | + |
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Preference number: 2 (lower is better) Translates to: NLCELALKHSESFCELVAGQSKE*PGGWAK Trigger: TTTGGCCCATCCTCCTGGCCACTCTTTGGACTGCCC...TGCCACAAGCTCACAAAAAGACTCGCTATGCTTAAGGGCCAGTTCACATAAATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCAGATAAAACAGAAGGCACCCACCAGGGCTACAAAACAGCGTTTAGTACAAAGGTCAAGGAGAAGCTaGGTCTCCAAGGGCAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: KQIKQKAPTRATKQRLVQRSRRS*VSKGSP Trigger: TGGACTGCCCTTGGAGACCCAGCTTCTCCTTGACCT...TTGTACTAAACGCTGTTTTGTAGCCCTGGTGGGTGCCTTCTGTTTTATCTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCAGATAAAACAGAAGGCACCCACCAGGGCTACAAAACAGCGTTTAGTACAACTCTTTTCTCCCTCCTaGGAGGCCTCTGAGAAGAAC | + |
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Preference number: 2 (lower is better) Translates to: KQIKQKAPTRATKQRLVQLFSPS*EASEKN Trigger: GTTCTTCTCAGAGGCCTCTCAGGAGGGAGAAAAGAG...TTGTACTAAACGCTGTTTTGTAGCCCTGGTGGGTGCCTTCTGTTTTATCTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | CACTTATGGGAAGGGGACAGTTTCTCTAACTCAAAGGGCCTTAATATCTCTATACTTTCCCTGTGGGGCTaGCCATGGCAGGCTGATAAG | + |
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Preference number: 2 (lower is better) Translates to: HLWEGDSFSNSKGLNISILSLWG*PWQADK Trigger: CTTATCAGCCTGCCATGGCCAGCCCCACAGGGAAAG...TATAGAGATATTAAGGCCCTTTGAGTTAGAGAAACTGTCCCCTTCCCATAAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | TCTTCAAGGGTCCTTTGGGCTCTGACTTTCTGTGGGTTATTTGGTTGGTTGGTTAAGAGAATTCATCTGTaGAGTAGAGAGACCGGCACC | + |
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Preference number: 2 (lower is better) Translates to: SSRVLWALTFCGLFGWLVKRIHL*SRETGT Trigger: GGTGCCGGTCTCTCTACTCCACAGATGAATTCTCTT...AACCAACCAACCAAATAACCCACAGAAAGTCAGAGCCCAAAGGACCCTTGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | AATTTATGTGAACTGGCCCTTAAGCATAGCGAGTCTTTTTGTGAGCTTGTGGCAAAGGGCATCATAAAGTaGGAGTTGAGGGCCCTGGTG | + |
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Preference number: 2 (lower is better) Translates to: NLCELALKHSESFCELVAKGIIK*ELRALV Trigger: CACCAGGGCCCTCAACTCCCACTTTATGATGCCCTT...TGCCACAAGCTCACAAAAAGACTCGCTATGCTTAAGGGCCAGTTCACATAAATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CAA 90 bp | CCCTTAAGCATAGCGAGTCTTTTTGTGAGCTTGTGGCAAATCAGTTaGAGGCCAGTTGACCTAGAACCAATTTGGGATACAAGCACTCAC | + |
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Preference number: 2 (lower is better) Translates to: PLSIASLFVSLWQIS*RPVDLEPIWDTSTH Trigger: GTGAGTGCTTGTATCCCAAATTGGTTCTAGGTCAACTGGCCTCAAACTGATTTGCCACAAGCTCACAAAAAGACTCGCTATGCTTAAGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR GCA 90 bp | AATGAGGACATTCGAACAGATGCCAAAGGACTTAAAAGGGGCTCAAATTTATGTTGGCTTGTCTCTCCCTaGTCTTCCTTCCTAGCCACC | + |
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Preference number: 2 (lower is better) Translates to: NEDIRTDAKGLKRGSNLCWLVSP*SSFLAT Trigger: GGTGGCTAGGAAGGAAGAGCAGGGAGAGACAAGCCA...ACATAAATTTGAGCCCCTTTTAAGTCCTTTGGCATCTGTTCGAATGTCCTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | CACTTATGGGAAGGGGACAGTTTCTCTAACTCAAAGGGCCTTAATATCTCTATAATTAGAGGAACTTGGTaGGTGAGAAGAGCCGGGACC | + |
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Preference number: 2 (lower is better) Translates to: HLWEGDSFSNSKGLNISIIRGTW*VRRAGT Trigger: GGTCCCGGCTCTTCTCACCCACCAAGTTCCTCTAAT...TATAGAGATATTAAGGCCCTTTGAGTTAGAGAAACTGTCCCCTTCCCATAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCAGATAAAACAGAAGGCACCCACCAGGGCTACAAAACAGCGTTTAGTACAAGGTAGTTTCAGTGCCTaGGAACCCCAATTAAAATGG | + |
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Preference number: 2 (lower is better) Translates to: KQIKQKAPTRATKQRLVQGSFSA*EPQLKW Trigger: CCATTTTAATTGGGGTTCTCAGGCACTGAAACTACC...TTGTACTAAACGCTGTTTTGTAGCCCTGGTGGGTGCCTTCTGTTTTATCTGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | AATTTATGTGAACTGGCCCTTAAGCATAGCGAGTCTTTTTGTGAGCTTGTGGCAAAAGCATGGATGTGCTaGAATCCACTGGAGAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: NLCELALKHSESFCELVAKAWMC*NPLEKG Trigger: TCCCTTCTCCAGTGGATTCCAGCACATCCATGCTTT...TGCCACAAGCTCACAAAAAGACTCGCTATGCTTAAGGGCCAGTTCACATAAATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CAA 90 bp | ATTTATGTGAACTGGCCCTTAAGCATAGCGAGTCTTTTTGTGAGCTaGTGGCAAATCAGTTTGAGGCCAGTTGACCTAGAACCAATTTGG | + |
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Preference number: 2 (lower is better) Translates to: IYVNWPLSIASLFVS*WQISLRPVDLEPIW Trigger: CCAAATTGGTTCTAGGTCAACTGGCCTCAAACTGATTTGCCACAAGCTCACAAAAAGACTCGCTATGCTTAAGGGCCAGTTCACATAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR GCA 90 bp | AAGCAGATAAAACAGAAGGCACCCACCAGGGCTACAAAACAGCGTTTAGTACAACTAGGAGAAAAAGAATaGCCTCCTGAATATGACCTC | + |
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Preference number: 2 (lower is better) Translates to: KQIKQKAPTRATKQRLVQLGEKE*PPEYDL Trigger: GAGGTCATATTCAGGAGGGCATTCTTTTTCTCCTAG...TTGTACTAAACGCTGTTTTGTAGCCCTGGTGGGTGCCTTCTGTTTTATCTGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | CACTTATGGGAAGGGGACAGTTTCTCTAACTCAAAGGGCCTTAATATCTCTATATGTGCTGGAATCCACTaGAGAAGGGAGTGTTCTTGT | + |
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Preference number: 2 (lower is better) Translates to: HLWEGDSFSNSKGLNISICAGIH*RRECSC Trigger: ACAAGAACACTCCCTTCTCCAGTGGATTCCAGCACA...TATAGAGATATTAAGGCCCTTTGAGTTAGAGAAACTGTCCCCTTCCCATAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | CATTTGTCAAGAAAGGCAAACTGGCTAAAAAGTCCCGAAAGTATTCAAAAGCAGTCTTCAAGGGTCCTTTaGGCTCTGACTTTCTGTGGG | + |
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Preference number: 2 (lower is better) Translates to: HLSRKANWLKSPESIQKQSSRVL*ALTFCG Trigger: CCCACAGAAAGTCAGAGCCCAAAGGACCCTTGAAGA...CTGCTTTTGAATACTTTCGGGACTTTTTAGCCAGTTTGCCTTTCTTGACAAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CCA 90 bp | CATTTGTCAAGAAAGGCAAACTGGCTAAAAAGTCCCGAAAGTATTCAAAAGCAGATTGATAAGAAAGCATaGATGTGCTGGAATCCACTG | + |
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Preference number: 2 (lower is better) Translates to: HLSRKANWLKSPESIQKQIDKKA*MCWNPL Trigger: CAGTGGATTCCAGCACATCCATGCTTTCTTATCAAT...CTGCTTTTGAATACTTTCGGGACTTTTTAGCCAGTTTGCCTTTCTTGACAAATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR GCA 72 bp | CAGCTCCCACTTCTAGCCCAAGAGGTGAGGACGCTATaGCTGGCCCTGCTCCCCAGGGTGGGCCTTGAAACG | + |
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Preference number: 3 (lower is better) Translates to: QLPLLAQEVRTL*LALLPRVGLET Trigger: CGTTTCAAGGCCCACCCTGGGGAGCAGGGCCAGGCATAGCGTCCTCACCTCTTGGGCTAGAAGTGGGAGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CAA 90 bp | TGGCATGAGCCTGGGAATAGGCCTGTGTGGGGTACATTTCACCACTTAGGGACTGCACCGGGAGGGCACTaGGCGAGCCCTTCAATCCTG | + |
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Preference number: 3 (lower is better) Translates to: WHEPGNRPVWGTFHHLGTAPGGH*ASPSIL Trigger: CAGGATTGAAGGGCTCGCCAAGTGCCCTCCCGGTGC...AGTCCCTAAGTGGTGAAATGTACCCCACACAGGCCTATTCCCAGGCTCATGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR TCA 72 bp | AGGGGCGAGACCACGCCATTAGAGGAACTTGGTGGGTaGGAAGAGCCGGGACCATCAGCAGCTAGAACAGGT | + |
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Preference number: 3 (lower is better) Translates to: RGETTPLEELGG*EEPGPSAARTG Trigger: ACCTGTTCTAGCTGCTGATGGTCCCGGCTCTTCTCACCCACCAAGTTCCTCTAATGGCGTGGTCTCGCCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 72 bp | ATAGGGACTACCGCATGGAACAGGTCAAGGAGAAGCTaGGTCTCCAAGGGCAGTCCAAAGAGTGGCCAGGAG | + |
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Preference number: 3 (lower is better) Translates to: IGTTAWNRSRRS*VSKGSPKSGQE Trigger: CTCCTGGCCACTCTTTGGACTGCCCTTGGAGACCCAGCTTCTCCTTGACCTGTTCCATGCGGTAGTCCCTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR TCA 72 bp | GTCTCCCTTCAGGGAAGGGCTACAAAAGGCTCCTGGTaGGAGATGAGACCCCCTTGGTGGAGTGATAGATCC | + |
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Preference number: 3 (lower is better) Translates to: VSLQGRATKGSW*EMRPPWWSDRS Trigger: GGATCTATCACTCCACCAAGGGGGTCTCATCTCTCACCAGGAGCCTTTTGTAGCCCTTCCCTGAAGGGAGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR GCA 72 bp | TCACACAAAGCAGTTCACAGCTGGCTTGTCTCTCCCTaGTCTTCCTTCCTAGCCACCCGCTTCACTAAACCC | + |
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Preference number: 3 (lower is better) Translates to: SHKAVHSWLVSP*SSFLATRFTKP Trigger: GGGTTTAGTGAAGCGGGTGGCTAGGAAGGAAGAGCAGGGAGAGACAAGCCAGCTGTGAACTGCTTTGTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR TCA 72 bp | GAGCCGGGACCATCAGCAGCTAGAACAGGTGCAAGATaGAAGCCAAATAGATGTGAGGGTTCCAGAGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: EPGPSAARTGAR*KPNRCEGSREE Trigger: CTCTTCTCTGGAACCCTCACATCTATTTGGCTTTCATCTTGCACCTGTTCTAGCTGCTGATGGTCCCGGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CAA 90 bp | GACAGCCCACTGGGCCCGTTTACTCCCCTCTTGTGCTTCTATCTCTCCTCTTTCGGGTTATTTGGTTGGTaGGTTGATTGGTTGGGATTA | + |
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Preference number: 3 (lower is better) Translates to: DSPLGPFTPLLCFYLSSFGLFGW*VDWLGL Trigger: TAATCCCAACCAATCAACCAACCAACCAAATAACCC...GAAAGAGGAGAGATAGAAGCACAAGAGGGGAGTAAACGGGCCCAGTGGGCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR TCA 72 bp | AATGAAAAGAGGGAAGAGCCAAGAGAAGGCTACGGCTaGAAGATAGGGACTACCGCATGGAACAGGTCAAGG | + |
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Preference number: 3 (lower is better) Translates to: NEKREEPREGYG*KIGTTAWNRSR Trigger: CCTTGACCTGTTCCATGCGGTAGTCCCTATCTTTCAGCCGTAGCCTTCTCTTGGCTCTTCCCTCTTTTCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 72 bp | TACATTTCACCACTTAGGGACTATTCCGGGCCACGTTaGGAGGGAGATGCTCCATTCTCACACAAAGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: YISPLRDYSGPR*EGDAPFSHKAV Trigger: AACTGCTTTGTGTGAGAATGGAGCATCTCCCTCCCAACGTGGCCCGGAATAGTCCCTAAGTGGTGAAATGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CAA 90 bp | ATGTGCTCAGGCAGAGAAGATGAGGGTCTCCCTTCAGGGAAGGGCTACAAAAGGCTTTCTGTGGGTTATTaGGTTGGTTGGTTGATTGGT | + |
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Preference number: 3 (lower is better) Translates to: MCSGREDEGLPSGKGYKRLSVGY*VGWLIG Trigger: ACCAATCAACCAACCAACCAAATAACCCACAGAAAG...CCTTTTGTAGCCCTTCCCTGAAGGGAGACCCTCATCTTCTCTGCCTGAGCACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CAA 90 bp | AATTTATGTGAACTGGCCCTTAAGCATAGCGAGTCTTTTTGTGAGCTTGTGGCACTATTCCGGGCCACGTaGGGAGGGAGATGCTCCATT | + |
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Preference number: 3 (lower is better) Translates to: NLCELALKHSESFCELVALFRAT*GGRCSI Trigger: AATGGAGCATCTCCCTCCCAACGTGGCCCGGAATAG...TGCCACAAGCTCACAAAAAGACTCGCTATGCTTAAGGGCCAGTTCACATAAATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR GCA 72 bp | CAGGCAAGAGGTCCAATTGATAAGAAAGCATGGATGTaGTGGAATCCACTGGAGAAGGGAGTGTTCTTGTCC | + |
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Preference number: 3 (lower is better) Translates to: QARGPIDKKAWM*WNPLEKGVFLS Trigger: GGACAAGAACACTCCCTTCTCCAGTGGATTCCAGCACATCCATGCTTTCTTATCAATTGGACCTCTTGCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 72 bp | CAATTGATAAGAAAGCATGGATGTGCTGGAATCCACTaGAGAAGGGAGTGTTCTTGTCCAGTGCCCAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: QLIRKHGCAGIH*RRECSCPVPKA Trigger: TGCCTTGGGCACTGGACAAGAACACTCCCTTCTCCAGTGGATTCCAGCACATCCATGCTTTCTTATCAATTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR-3UTR CAA 90 bp | CAGCAGATAGGAAGGCTTTGGGAAAGGATGAATAGGCAATCAGGTTATTATGGGGAGAAGGGAGTGTTCTaGTCCAGTGCCCAAGGCAAA | + |
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Preference number: 3 (lower is better) Translates to: QQIGRLWERMNRQSGYYGEKGVF*SSAQGK Trigger: TTTGCCTTGGGCACTGGACAAGAACACTCCCTTCTC...CCCATAATAACCTGATTGCCTATTCATCCTTTCCCAAAGCCTTCCTATCTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 72 bp | GCAAGAGGTCCAATTGATAAGAAAGCATGGATGTGCTaGAATCCACTGGAGAAGGGAGTGTTCTTGTCCAGT | + |
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Preference number: 3 (lower is better) Translates to: ARGPIDKKAWMC*NPLEKGVFLSS Trigger: ACTGGACAAGAACACTCCCTTCTCCAGTGGATTCCAGCACATCCATGCTTTCTTATCAATTGGACCTCTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 72 bp | CAAATCAGTTTGAGGCCAGTTGACCTAGAACCAATTTaGGATACAAGCACTCACCTCCCTACACGTGCAATC | + |
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Preference number: 3 (lower is better) Translates to: QISLRPVDLEPI*DTSTHLPTRAI Trigger: GATTGCACGTGTAGGGAGGTGAGTGCTTGTATCCCAAATTGGTTCTAGGTCAACTGGCCTCAAACTGATTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 72 bp | TGGCCCTTAAGCATAGCGAGTCTTTTTGTGAGCTTGTaGCAAATCAGTTTGAGGCCAGTTGACCTAGAACCA | + |
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Preference number: 3 (lower is better) Translates to: WPLSIASLFVSL*QISLRPVDLEP Trigger: TGGTTCTAGGTCAACTGGCCTCAAACTGATTTGCCACAAGCTCACAAAAAGACTCGCTATGCTTAAGGGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR GCA 72 bp | TTACTTCCCTCTCCAGGGCCTATTTGTGCAAGCTTTTaGATAAGGGAGCTAAGTGATCTTCAAGGGTCCTTT | + |
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Preference number: 3 (lower is better) Translates to: LLPSPGPICASF*IRELSDLQGSF Trigger: AAAGGACCCTTGAAGATCACTTAGCTCCCTTATGCAAAAGCTTGCACAAATAGGCCCTGGAGAGGGAAGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR GCA 72 bp | ACCCGCTTCACTAAACCCAGCAAAAGGCACTTCATTTaGTTTGAAAGGACATCATCAAGAGGAAAAAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: TRFTKPSKRHFI*FERTSSRGKRA Trigger: TGCCCTTTTTCCTCTTGATGATGTCCTTTCAAAGCAAATGAAGTGCCTTTTGCTGGGTTTAGTGAAGCGGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 72 bp | GAAATACACATAACCACTTTAAATAAGACAGCCCACTaGGCCCGTTTACTCCCCTCTTGTGCTTCTATCTCT | + |
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Preference number: 3 (lower is better) Translates to: EIHITTLNKTAH*ARLLPSCASIS Trigger: AGAGATAGAAGCACAAGAGGGGAGTAAACGGGCCCAGTGGGCTGTCTTATTTAAAGTGGTTATGTGTATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR TCA 72 bp | GATACATACAAAGTCATTACCAAATGTATTTATGGCTaGGGACAACATTTGTCAAGAAAGGCAAACTGGCTA | + |
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Preference number: 3 (lower is better) Translates to: DTYKVITKCIYG*GQHLSRKANWL Trigger: TAGCCAGTTTGCCTTTCTTGACAAATGTTGTCCTCAGCCATAAATACATTTGGTAATGACTTTGTATGTATC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CCA 72 bp | AAACGATACATACAAAGTCATTACCAAATGTATTTATaGCTGAGGACAACATTTGTCAAGAAAGGCAAACTG | + |
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Preference number: 3 (lower is better) Translates to: KRYIQSHYQMYL*LRTTFVKKGKL Trigger: CAGTTTGCCTTTCTTGACAAATGTTGTCCTCAGCCATAAATACATTTGGTAATGACTTTGTATGTATCGTTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CAA 72 bp | GACCCCAACACCCAACCCCTCTCAACCGAAGTCTCATaGCACATCTCGGCGCTCCCTTCCAGGCAAGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: DPNTQPLSTEVS*HISALPSRQEV Trigger: GACCTCTTGCCTGGAAGGGAGCGCCGAGATGTGCAATGAGACTTCGGTTGAGAGGGGTTGGGTGTTGGGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| CDS-3UTR GCA 90 bp | CTCCAAGGGCAGTCCAAAGAGTGGCCAGGAGGATGGGCCAAAGGGATCCTTGTGTGGCACTCCACAAACTaGAGTCAAGGAGAGCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LQGQSKEWPGGWAKGILVWHSTN*SQGEPE Trigger: CTCTGGCTCTCCTTGACTGCAGTTTGTGGAGTGCCA...CACAAGGATCCCTTTGGCCCATCCTCCTGGCCACTCTTTGGACTGCCCTTGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| CDS-3UTR GCA 90 bp | GAACTTCATGGGCTCCTTTCCTTTGCGTCTTCCTTTAACAGGGCCAGAGAGAGCTTCCTCCTGCCTCCCTaGCAGGCTCCTGGTCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: ELHGLLSFASSFNRARESFLLPP*QAPGPV Trigger: GACTGGACCAGGAGCCTGGCAGGGAGGCAGGAGGAA...GCTCTCTCTGGCCCTGTTAAAGGAAGACGCAAAGGAAAGGAGCCCATGAAGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| CDS-3UTR CCA 90 bp | TCCAAAGAGTGGCCAGGAGGATGGGCCAAAGGGATCCTTGTGAGAGGAATGAAATCCCTGCCAGGCTCCTaGTCCAGTCCTCGAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: SKEWPGGWAKGILVRGMKSLPGS*SSPRSS Trigger: AGAACTTCGAGGACTGGACCAGGAGCCTGGCAGGGA...TTTCATTCCTCTCACAAGGATCCCTTTGGCCCATCCTCCTGGCCACTCTTTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CAA 72 bp | CACATCTCGGCGCTCCCTTCCAGGCAAGAGGTCCAATaGATAAGAAAGCATGGATGTGCTGGAATCCACTGG | + |
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Preference number: 4 (lower is better) Translates to: HISALPSRQEVQ*IRKHGCAGIHW Trigger: CCAGTGGATTCCAGCACATCCATGCTTTCTTATCAATTGGACCTCTTGCCTGGAAGGGAGCGCCGAGATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CAA 72 bp | TCCCTACACGTGCAATCTGTGGGCACAGGGACAAGATaGGCCCTAGGAGAAAAAGAATGCCCTCCTGAATAT | + |
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Preference number: 4 (lower is better) Translates to: SLHVQSVGTGTR*ALGEKECPPEY Trigger: ATATTCAGGAGGGCATTCTTTTTCTCCTAGGGCCAATCTTGTCCCTGTGCCCACAGATTGCACGTGTAGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CAA 72 bp | AACTGGCCCTTAAGCATAGCGAGTCTTTTTGTGAGCTaGTGGCAAATCAGTTTGAGGCCAGTTGACCTAGAA | + |
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Preference number: 4 (lower is better) Translates to: NWPLSIASLFVS*WQISLRPVDLE Trigger: TTCTAGGTCAACTGGCCTCAAACTGATTTGCCACAAGCTCACAAAAAGACTCGCTATGCTTAAGGGCCAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| 3UTR CAA 72 bp | AGGGCTACAAAACAGCGTTTAGTACAAATCCCACCTTaGATCAGCGTGTCCTTAAATGAATTGCTTCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: RATKQRLVQIPP*ISVSLNELLLE Trigger: TTCCAGAAGCAATTCATTTAAGGACACGCTGATCAAAGGTGGGATTTGTACTAAACGCTGTTTTGTAGCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| CDS CCA 90 bp | TCCTCCTGCCTCCCTGCCAGGCTCCTGGTCCAGTCCTCGAAGTTCTaGGCTTCACCAGGTAGCGCATGCTTCCTTCTTCTAGTCCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: SSCLPARLLVQSSKF*ASPGSACFLLLVLF Trigger: GAACAGGACTAGAAGAAGGAAGCATGCGCTACCTGGTGAAGCCCAGAACTTCGAGGACTGGACCAGGAGCCTGGCAGGGAGGCAGGAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| CDS GCA 72 bp | CGGGGGCGCTGTCTGCGAAATTTCCTCCTGCCTCCCTaGCAGGCTCCTGGTCCAGTCCTCGAAGTTCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: RGRCLRNFLLPP*QAPGPVLEVLG Trigger: GCCCAGAACTTCGAGGACTGGACCAGGAGCCTGGCAGGGAGGCAGGAGGAAATTTCGCAGACAGCGCCCCCG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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| CDS CCA 72 bp | CTCCCTGCCAGGCTCCTGGTCCAGTCCTCGAAGTTCTaGGCTTCACCAGGTAGCGCATGCTTCCTTCTTCTA | + |
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Preference number: 6 (lower is better) Translates to: LPARLLVQSSKF*ASPGSACFLLL Trigger: TAGAAGAAGGAAGCATGCGCTACCTGGTGAAGCCCAGAACTTCGAGGACTGGACCAGGAGCCTGGCAGGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039026.8 |
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