Pregenerated sensors for API5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027193Ensembl transcript IDs: ENSMUST00000028617.7
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTAAGTTATGAACTACTGACTAGGCAAGGGGAAGGAAGCAAAGGATaGGGAGGGGTGAATGCAGTGAGCTCTGCAGTAGACATGAGGTCA | + |
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Preference number: 1 (lower is better) Translates to: LSYELLTRQGEGSKG*GGVNAVSSAVDMRS Trigger: TGACCTCATGTCTACTGCAGAGCTCACTGCATTCACCCCTCCTCATCCTTTGCTTCCTTCCCCTTGCCTAGTCAGTAGTTCATAACTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR GCA 90 bp | AGGGGAAGGAAGCAAAGGATGAGGAGGGGTGAATGCAGTGAGCTCTaGAGTAGACATGAGGTCAAGTTACTTCTGCCGAGTTTACAAATG | + |
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Preference number: 1 (lower is better) Translates to: RGRKQRMRRGECSEL*SRHEVKLLLPSLQM Trigger: CATTTGTAAACTCGGCAGAAGTAACTTGACCTCATGTCTACTGCAGAGCTCACTGCATTCACCCCTCCTCATCCTTTGCTTCCTTCCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR CCA 90 bp | AAGTTCTTTCTAAAAGGCTGGCATCGCCTGTACACTGTGAGAAGCTaGTGCTTCATTTCTATGACTTGGCAGGAATGCGACAACACTGCC | + |
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Preference number: 1 (lower is better) Translates to: KFFLKGWHRLYTVRS*CFISMTWQECDNTA Trigger: GGCAGTGTTGTCGCATTCCTGCCAAGTCATAGAAATGAAGCACCAGCTTCTCACAGTGTACAGGCGATGCCAGCCTTTTAGAAAGAACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR GCA 90 bp | GTGAATGCAGTGAGCTCTGCAGTAGACATGAGGTCAAGTTACTTCTaGCGAGTTTACAAATGCCCTCAGGCAAAGAGGAAAAGTTACTGT | + |
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Preference number: 1 (lower is better) Translates to: VNAVSSAVDMRSSYF*RVYKCPQAKRKSYC Trigger: ACAGTAACTTTTCCTCTTTGCCTGAGGGCATTTGTAAACTCGGCAGAAGTAACTTGACCTCATGTCTACTGCAGAGCTCACTGCATTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR GCA 90 bp | TCTGCAGTAGACATGAGGTCAAGTTACTTCTGCCGAGTTTACAAATaGCCTCAGGCAAAGAGGAAAAGTTACTGTGTTCAAATTTATGTT | + |
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Preference number: 1 (lower is better) Translates to: SAVDMRSSYFCRVYK*PQAKRKSYCVQIYV Trigger: AACATAAATTTGAACACAGTAACTTTTCCTCTTTGCCTGAGGGCATTTGTAAACTCGGCAGAAGTAACTTGACCTCATGTCTACTGCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR TCA 90 bp | AGCAAGTTCTTTCTAAAAGGCTGGCATCGCCTGTACACTGTGAGAAGCTGGTGCAGAGTCAGATCTCAGTaGCAAACCATCAAGATGTGT | + |
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Preference number: 2 (lower is better) Translates to: SKFFLKGWHRLYTVRSWCRVRSQ*QTIKMC Trigger: ACACATCTTGATGGTTTGTCACTGAGATCTGACTCT...GCACCAGCTTCTCACAGTGTACAGGCGATGCCAGCCTTTTAGAAAGAACTTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR TCA 90 bp | TACACTAGCAGATCCTGTGGGAACCTGTATGTACACCAGATCTGGCTGTATTTCGGTGCTTCATTTCTATaGCTTGGCAGGAATGCGACA | + |
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Preference number: 2 (lower is better) Translates to: YTSRSCGNLYVHQIWLYFGASFL*LGRNAT Trigger: TGTCGCATTCCTGCCAAGTCATAGAAATGAAGCACC...GAAATACAGCCAGATCTGGTGTACATACAGGTTCCCACAGGATCTGCTAGTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR TCA 90 bp | GGTCAAGTTACTTCTGCCGAGTTTACAAATGCCCTCAGGCAAAGAGGAAAAGTTATCTGTAAGTTCAGCTaGCTGAAATTCCTCCCTACT | + |
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Preference number: 2 (lower is better) Translates to: GQVTSAEFTNALRQRGKVICKFS*LKFLPT Trigger: AGTAGGGAGGAATTTCAGTCAGCTGAACTTACAGAT...AACTTTTCCTCTTTGCCTGAGGGCATTTGTAAACTCGGCAGAAGTAACTTGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR GCA 90 bp | GGTCAAGTTACTTCTGCCGAGTTTACAAATGCCCTCAGGCAAAGAGGAAAAGTTACTGTGAGAAGCTGGTaGTTCATTTCTATGACTTGG | + |
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Preference number: 2 (lower is better) Translates to: GQVTSAEFTNALRQRGKVTVRSW*FISMTW Trigger: CCAAGTCATAGAAATGAAGCACCAGCTTCTCACAGT...AACTTTTCCTCTTTGCCTGAGGGCATTTGTAAACTCGGCAGAAGTAACTTGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR TCA 90 bp | TCACAGGCTAGACTGACTTTTCCAATAGAGTCAGATCTCAGTGACAAACCATCAGCAAGATTCACAAGATaGAGTCTGGATAGTGAGGAT | + |
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Preference number: 2 (lower is better) Translates to: SQARLTFPIESDLSDKPSARFTR*SLDSED Trigger: ATCCTCACTATCCAGACTTCATCTTGTGAATCTTGC...TGATGGTTTGTCACTGAGATCTGACTCTATTGGAAAAGTCAGTCTAGCCTGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR TCA 90 bp | GGGATAATCGCTATGTCAGAGGACCCCTTCCGAGAATTTAATGTATTGATTGGTATAGTGAGGATATTGTaGAAACAAGTCAAGGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: GIIAMSEDPFREFNVLIGIVRIL*KQVKAA Trigger: TGCAGCCTTGACTTGTTTTCACAATATCCTCACTAT...ACCAATCAATACATTAAATTCTCGGAAGGGGTCCTCTGACATAGCGATTATCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR TCA 90 bp | ATCGCTATGTCAGAGGACCCCTTCCGAGAATTTAATGTATTGATTGGTTGTACAAAATATGGAGAAGACTaGAGGGGCAATGCAAAGCAA | + |
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Preference number: 2 (lower is better) Translates to: IAMSEDPFREFNVLIGCTKYGED*RGNAKQ Trigger: TTGCTTTGCATTGCCCCTTCAGTCTTCTCCATATTT...TGTACAACCAATCAATACATTAAATTCTCGGAAGGGGTCCTCTGACATAGCGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR CAA 90 bp | GGGATAATCGCTATGTCAGAGGACCCCTTCCGAGAATTTAATGTATaGATTGGTTGTACACTCAAGTTCCATAGCATGCATATATACACA | + |
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Preference number: 2 (lower is better) Translates to: GIIAMSEDPFREFNV*IGCTLKFHSMHIYT Trigger: TGTGTATATATGCATGCTATGGAACTTGAGTGTACAACCAATCAATACATTAAATTCTCGGAAGGGGTCCTCTGACATAGCGATTATCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR TCA 90 bp | TTGCGGAAGAAAAAGATTCATGGCATGAAGATTTTCTTTCAGATTTCTGAAGCAGTAAGTTCAGCTGACTaGAATTCCTCCCTACTGGAG | + |
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Preference number: 2 (lower is better) Translates to: LRKKKIHGMKIFFQISEAVSSAD*NSSLLE Trigger: CTCCAGTAGGGAGGAATTTCAGTCAGCTGAACTTAC...TGCTTCAGAAATCTGAAAGAAAATCTTCATGCCATGAATCTTTTTCTTCCGCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR GCA 90 bp | TTGCGGAAGAAAAAGATTCATGGCATGAAGATTTTCTTTCAGATTTCTGAAGCATGCCGAGTTTACAAATaGCCTCAGGCAAAGAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: LRKKKIHGMKIFFQISEACRVYK*PQAKRK Trigger: TTTCCTCTTTGCCTGAGGGCATTTGTAAACTCGGCA...TGCTTCAGAAATCTGAAAGAAAATCTTCATGCCATGAATCTTTTTCTTCCGCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR GCA 90 bp | TTTCAGATTTCTGAAGCAAAAGGAACACTAAGTTATGAACTACTGACTAGGCAAAGGTCAAGTTACTTCTaGCGAGTTTACAAATGCCCT | + |
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Preference number: 2 (lower is better) Translates to: FQISEAKGTLSYELLTRQRSSYF*RVYKCP Trigger: AGGGCATTTGTAAACTCGGCAGAAGTAACTTGACCT...TTGCCTAGTCAGTAGTTCATAACTTAGTGTTCCTTTTGCTTCAGAAATCTGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR TCA 90 bp | TTGCGGAAGAAAAAGATTCATGGCATGAAGATTTTCTTTCAGATTTCTGAAGCATGTGAAACATTCAAATaGAGAACAGAGTCTGGGCTA | + |
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Preference number: 2 (lower is better) Translates to: LRKKKIHGMKIFFQISEACETFK*RTESGL Trigger: TAGCCCAGACTCTGTTCTTCATTTGAATGTTTCACA...TGCTTCAGAAATCTGAAAGAAAATCTTCATGCCATGAATCTTTTTCTTCCGCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR TCA 90 bp | TTGCGGAAGAAAAAGATTCATGGCATGAAGATTTTCTTTCAGATTTCTGAAGCACATAAATACATGCAGTaGTTCTCACAAAGGAGATTG | + |
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Preference number: 2 (lower is better) Translates to: LRKKKIHGMKIFFQISEAHKYMQ*FSQRRL Trigger: CAATCTCCTTTGTGAGAATCACTGCATGTATTTATG...TGCTTCAGAAATCTGAAAGAAAATCTTCATGCCATGAATCTTTTTCTTCCGCAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR GCA 72 bp | GCAAGGGGAAGGAAGCAAAGGATGAGGAGGGGTGAATaGAGTGAGCTCTGCAGTAGACATGAGGTCAAGTTA | + |
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Preference number: 3 (lower is better) Translates to: ARGRKQRMRRGE*SELCSRHEVKL Trigger: TAACTTGACCTCATGTCTACTGCAGAGCTCACTGCATTCACCCCTCCTCATCCTTTGCTTCCTTCCCCTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR CCA 72 bp | GAAGGGGCAATGCAAAGCAAGTTCTTTCTAAAAGGCTaGCATCGCCTGTACACTGTGAGAAGCTGGTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: EGAMQSKFFLKG*HRLYTVRSWCF Trigger: GAAGCACCAGCTTCTCACAGTGTACAGGCGATGCCAGCCTTTTAGAAAGAACTTGCTTTGCATTGCCCCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR CAA 90 bp | AGCAAGTTCTTTCTAAAAGGCTGGCATCGCCTGTACACTGTGAGAAGCTGGTGCACTCTTCTCCATGTGTaGGGCAGAAACCTAACGGAA | + |
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Preference number: 3 (lower is better) Translates to: SKFFLKGWHRLYTVRSWCTLLHV*GRNLTE Trigger: TTCCGTTAGGTTTCTGCCCAACACATGGAGAAGAGT...GCACCAGCTTCTCACAGTGTACAGGCGATGCCAGCCTTTTAGAAAGAACTTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR GCA 72 bp | GTGAGCTCTGCAGTAGACATGAGGTCAAGTTACTTCTaGCGAGTTTACAAATGCCCTCAGGCAAAGAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: VSSAVDMRSSYF*RVYKCPQAKRK Trigger: TTTCCTCTTTGCCTGAGGGCATTTGTAAACTCGGCAGAAGTAACTTGACCTCATGTCTACTGCAGAGCTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR CAA 90 bp | TACACTAGCAGATCCTGTGGGAACCTGTATGTACACCAGATCTGGCTGTATTTCCTTCATTTCTATGACTaGGCAGGAATGCGACAACAC | + |
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Preference number: 3 (lower is better) Translates to: YTSRSCGNLYVHQIWLYFLHFYD*AGMRQH Trigger: GTGTTGTCGCATTCCTGCCAAGTCATAGAAATGAAG...GAAATACAGCCAGATCTGGTGTACATACAGGTTCCCACAGGATCTGCTAGTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR TCA 72 bp | CTATGTCAGAGGACCCCTTCCGAGAATTTAATGTATTaGTTGGTTGTACACTCAAGTTCCATAGCATGCATA | + |
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Preference number: 3 (lower is better) Translates to: LCQRTPSENLMY*LVVHSSSIACI Trigger: TATGCATGCTATGGAACTTGAGTGTACAACCAATCAATACATTAAATTCTCGGAAGGGGTCCTCTGACATAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR-3UTR CAA 90 bp | TTGCGGAAGAAAAAGATTCATGGCATGAAGATTTTCTTTCAGATTTCTGAAGCATTCTCACAAAGGAGATaGTTTTTCCCCCAGTGTAGA | + |
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Preference number: 3 (lower is better) Translates to: LRKKKIHGMKIFFQISEAFSQRR*FFPQCR Trigger: TCTACACTGGGGGAAAAACAATCTCCTTTGTGAGAA...TGCTTCAGAAATCTGAAAGAAAATCTTCATGCCATGAATCTTTTTCTTCCGCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR GCA 90 bp | GGTCAAGTTACTTCTGCCGAGTTTACAAATGCCCTCAGGCAAAGAGGAAAAGTTGAGGGGCTGAAGGCCTaGTCCAGGTCAGCCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: GQVTSAEFTNALRQRGKVEGLKA*SRSACS Trigger: GGAACAGGCTGACCTGGAGCAGGCCTTCAGCCCCTC...AACTTTTCCTCTTTGCCTGAGGGCATTTGTAAACTCGGCAGAAGTAACTTGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR TCA 90 bp | TTGCGGAAGAAAAAGATTCATGGCATGAAGATTTTCTTTCAGATTTCTGAAGCACGGGGTCTGAGGGGCTaGAGGCCTGCTCCAGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LRKKKIHGMKIFFQISEARGLRG*RPAPGQ Trigger: CTGACCTGGAGCAGGCCTTCAGCCCCTCAGACCCCG...TGCTTCAGAAATCTGAAAGAAAATCTTCATGCCATGAATCTTTTTCTTCCGCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR TCA 90 bp | AGCAAGTTCTTTCTAAAAGGCTGGCATCGCCTGTACACTGTGAGAAGCTGGTGCTGCTTGACGTCGTATTaGCACATCTTCATCCTCACA | + |
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Preference number: 4 (lower is better) Translates to: SKFFLKGWHRLYTVRSWCCLTSY*HIFILT Trigger: TGTGAGGATGAAGATGTGTCAATACGACGTCAAGCA...GCACCAGCTTCTCACAGTGTACAGGCGATGCCAGCCTTTTAGAAAGAACTTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR CCA 90 bp | AGCAAGTTCTTTCTAAAAGGCTGGCATCGCCTGTACACTGTGAGAAGCTGGTGCAGTCAACACCTCATCTaGGAGCGTCTTGAGTTTTGT | + |
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Preference number: 4 (lower is better) Translates to: SKFFLKGWHRLYTVRSWCSQHLI*ERLEFC Trigger: ACAAAACTCAAGACGCTCCCAGATGAGGTGTTGACT...GCACCAGCTTCTCACAGTGTACAGGCGATGCCAGCCTTTTAGAAAGAACTTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR GCA 90 bp | TACACTAGCAGATCCTGTGGGAACCTGTATGTACACCAGATCTGGCTGTATTTCAGTTGCTCAGATTGCTaGTGTACTTTCCACTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: YTSRSCGNLYVHQIWLYFSCSDC*CTFHSE Trigger: CTCCGAGTGGAAAGTACAGCAGCAATCTGAGCAACT...GAAATACAGCCAGATCTGGTGTACATACAGGTTCCCACAGGATCTGCTAGTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR GCA 90 bp | TTTCAGATTTCTGAAGCAAAAGGAACACTAAGTTATGAACTACTGACTAGGCAAGCCTGCCGCGTGCACTaGAGTAGTCTGTCCACACAG | + |
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Preference number: 4 (lower is better) Translates to: FQISEAKGTLSYELLTRQACRVH*SSLSTQ Trigger: CTGTGTGGACAGACTACTGCAGTGCACGCGGCAGGC...TTGCCTAGTCAGTAGTTCATAACTTAGTGTTCCTTTTGCTTCAGAAATCTGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR TCA 90 bp | GGGATAATCGCTATGTCAGAGGACCCCTTCCGAGAATTTAATGTATTGATTGGTCATCTGGGAGCGTCTTaGGTTTTGTGGACAGGAATT | + |
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Preference number: 4 (lower is better) Translates to: GIIAMSEDPFREFNVLIGHLGAS*VLWTGI Trigger: AATTCCTGTCCACAAAACTCAAGACGCTCCCAGATG...ACCAATCAATACATTAAATTCTCGGAAGGGGTCCTCTGACATAGCGATTATCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR TCA 90 bp | AAGCAAGTTCTTTCTAAAAGGCTGGCATCGCCTGTACACTGTGAGAAGCTGGTGAATTTTGGTATAAACTaGGCTGCTAATCGCTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: KQVLSKRLASPVHCEKLVNFGIN*AANRFS Trigger: GGAAAAGCGATTAGCAGCTCAGTTTATACCAAAATT...CACCAGCTTCTCACAGTGTACAGGCGATGCCAGCCTTTTAGAAAGAACTTGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR CCA 90 bp | GGGATAATCGCTATGTCAGAGGACCCCTTCCGAGAATTTAATGTATTGATTGGTTCTGTCTGCAGAAGCTaGGTCAGTATATCTGCTACT | + |
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Preference number: 4 (lower is better) Translates to: GIIAMSEDPFREFNVLIGSVCRS*VSISAT Trigger: AGTAGCAGATATACTGACCCAGCTTCTGCAGACAGA...ACCAATCAATACATTAAATTCTCGGAAGGGGTCCTCTGACATAGCGATTATCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR TCA 90 bp | GAGGAGAACAGTAACGTTTCAAGAGTGATGATCTTCACCAGATCACAGGCTAGAACAATGTCTTCTCCTTaGAGAATCTGGCTAAACAAG | + |
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Preference number: 4 (lower is better) Translates to: EENSNVSRVMIFTRSQARTMSSP*RIWLNK Trigger: CTTGTTTAGCCAGATTCTTCAAGGAGAAGACATTGT...TCTAGCCTGTGATCTGGTGAAGATCATCACTCTTGAAACGTTACTGTTCTCCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR GCA 90 bp | TTGCGGAAGAAAAAGATTCATGGCATGAAGATTTTCTTTCAGATTTCTGAAGCAATCGCTTTTCCTTGGTaGCGCCTTTCACGCCATCCA | + |
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Preference number: 4 (lower is better) Translates to: LRKKKIHGMKIFFQISEAIAFPW*RLSRHP Trigger: TGGATGGCGTGAAAGGCGGCACCAAGGAAAAGCGAT...TGCTTCAGAAATCTGAAAGAAAATCTTCATGCCATGAATCTTTTTCTTCCGCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR GCA 90 bp | AAGCAAGTTCTTTCTAAAAGGCTGGCATCGCCTGTACACTGTGAGAAGCTGGTGGCCAGCTCTGGAAAATaGTTAAAGAATTTTGGTATA | + |
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Preference number: 4 (lower is better) Translates to: KQVLSKRLASPVHCEKLVASSGK*LKNFGI Trigger: TATACCAAAATTCTTTAAGCATTTTCCAGAGCTGGC...CACCAGCTTCTCACAGTGTACAGGCGATGCCAGCCTTTTAGAAAGAACTTGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| 3UTR CAA 72 bp | GCTATGTCAGAGGACCCCTTCCGAGAATTTAATGTATaGATTGGTTGTACACTCAAGTTCCATAGCATGCAT | + |
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Preference number: 4 (lower is better) Translates to: AMSEDPFREFNV*IGCTLKFHSMH Trigger: ATGCATGCTATGGAACTTGAGTGTACAACCAATCAATACATTAAATTCTCGGAAGGGGTCCTCTGACATAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR TCA 90 bp | TTGCGGAAGAAAAAGATTCATGGCATGAAGATTTTCTTTCAGATTTCTGAAGCAAGCTCTTTAATTGCTTaGCGTCGTATTGACACATCT | + |
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Preference number: 4 (lower is better) Translates to: LRKKKIHGMKIFFQISEASSLIA*RRIDTS Trigger: AGATGTGTCAATACGACGTCAAGCAATTAAAGAGCT...TGCTTCAGAAATCTGAAAGAAAATCTTCATGCCATGAATCTTTTTCTTCCGCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS GCA 90 bp | ACAAATCTTGTAGAATGCACATTTTTGGAGAAGAGAGGCACAGCCTaGCGCGTGCACTGCAGTAGTCTGTCCACACAGTCGGGGTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: TNLVECTFLEKRGTA*RVHCSSLSTQSGSE Trigger: CTCAGACCCCGACTGTGTGGACAGACTACTGCAGTGCACGCGGCAGGCTGTGCCTCTCTTCTCCAAAAATGTGCATTCTACAAGATTTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR CAA 90 bp | AAGCAAGTTCTTTCTAAAAGGCTGGCATCGCCTGTACACTGTGAGAAGCTGGTGGTAGAATGCACATTTTaGGAGAAGAGAGGCACAGCC | + |
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Preference number: 5 (lower is better) Translates to: KQVLSKRLASPVHCEKLVVECTF*EKRGTA Trigger: GGCTGTGCCTCTCTTCTCCAAAAATGTGCATTCTAC...CACCAGCTTCTCACAGTGTACAGGCGATGCCAGCCTTTTAGAAAGAACTTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR CAA 90 bp | TTTCAGATTTCTGAAGCAAAAGGAACACTAAGTTATGAACTACTGACTAGGCAAGCTAATCGCTTTTCCTaGGTGCCGCCTTTCACGCCA | + |
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Preference number: 5 (lower is better) Translates to: FQISEAKGTLSYELLTRQANRFS*VPPFTP Trigger: TGGCGTGAAAGGCGGCACCAAGGAAAAGCGATTAGC...TTGCCTAGTCAGTAGTTCATAACTTAGTGTTCCTTTTGCTTCAGAAATCTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS-3UTR CAA 90 bp | TACACTAGCAGATCCTGTGGGAACCTGTATGTACACCAGATCTGGCTGTATTTCAACAATGTCTTCTCCTaGAAGAATCTGGCTAAACAA | + |
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Preference number: 5 (lower is better) Translates to: YTSRSCGNLYVHQIWLYFNNVFS*KNLAKQ Trigger: TTGTTTAGCCAGATTCTTCAAGGAGAAGACATTGTT...GAAATACAGCCAGATCTGGTGTACATACAGGTTCCCACAGGATCTGCTAGTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS GCA 72 bp | TTTTTGGAGAAGAGAGGCACAGCCTGCCGCGTGCACTaGAGTAGTCTGTCCACACAGTCGGGGTCTGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: FLEKRGTACRVH*SSLSTQSGSEG Trigger: CCCCTCAGACCCCGACTGTGTGGACAGACTACTGCAGTGCACGCGGCAGGCTGTGCCTCTCTTCTCCAAAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS GCA 72 bp | GCACATTTTTGGAGAAGAGAGGCACAGCCTGCCGCGTaGACTGCAGTAGTCTGTCCACACAGTCGGGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: AHFWRREAQPAA*TAVVCPHSRGL Trigger: CAGACCCCGACTGTGTGGACAGACTACTGCAGTGCACGCGGCAGGCTGTGCCTCTCTTCTCCAAAAATGTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS GCA 72 bp | GTAGAATGCACATTTTTGGAGAAGAGAGGCACAGCCTaGCGCGTGCACTGCAGTAGTCTGTCCACACAGTCG | + |
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Preference number: 6 (lower is better) Translates to: VECTFLEKRGTA*RVHCSSLSTQS Trigger: CGACTGTGTGGACAGACTACTGCAGTGCACGCGGCAGGCTGTGCCTCTCTTCTCCAAAAATGTGCATTCTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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| CDS CAA 72 bp | CAGAAATACGTCACAAATCTTGTAGAATGCACATTTTaGGAGAAGAGAGGCACAGCCTGCCGCGTGCACTGC | + |
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Preference number: 6 (lower is better) Translates to: QKYVTNLVECTF*EKRGTACRVHC Trigger: GCAGTGCACGCGGCAGGCTGTGCCTCTCTTCTCCAAAAATGTGCATTCTACAAGATTTGTGACGTATTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028617.7 |
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