RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APH1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015750

Ensembl transcript IDs: ENSMUST00000015894.12, ENSMUST00000056710.10, ENSMUST00000197081.2

Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGGAGGATGAGGGCAATGGACCCGGGCTGGGGCTGGGTTCAGTCATaGGCAGTGGATAGGCAGATGGGATCTGTCGGGCGATCAGTCCAG +
Preference number: 1 (lower is better)
Translates to: RRMRAMDPGWGWVQS*AVDRQMGSVGRSVQ
Trigger: CTGGACTGATCGCCCGACAGATCCCATCTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 90 bp TCAGCGAGGAGACGGAGGATGAGGGCAATGGACCCGGGCTGGGGCTaGGTTCAGTCATGGGCAGTGGATAGGCAGATGGGATCTGTCGGG +
Preference number: 1 (lower is better)
Translates to: SARRRRMRAMDPGWG*VQSWAVDRQMGSVG
Trigger: CCCGACAGATCCCATCTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCGTCTCCTCGCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 90 bp CTCCCTCTCCTCCTGCCAGGGAGCCTCTCTGAGGGCTGCAGGCACTaGACGACCAGTTGTAGGCAGGCACGTGTCCTGCTAGGTAACCCT +
Preference number: 1 (lower is better)
Translates to: LPLLLPGSLSEGCRH*TTSCRQARVLLGNP
Trigger: AGGGTTACCTAGCAGGACACGTGCCTGCCTACAACTGGTCGTCCAGTGCCTGCAGCCCTCAGAGAGGCTCCCTGGCAGGAGGAGAGGGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR GCA 90 bp CCTCTGGGCCTGCGATGCCATGGTAGTCTGACTCCTTCAGGGCACTaGCATGGAGTGGGCAGGCCCCCACAGCACCCTCCATTTCACCTT +
Preference number: 1 (lower is better)
Translates to: PLGLRCHGSLTPSGH*HGVGRPPQHPPFHL
Trigger: AAGGTGAAATGGAGGGTGCTGTGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCATCGCAGGCCCAGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR CCA 90 bp GGCACATCAGCGAGGAGACGGAGGATGAGGGCAATGGACCCGGGCTaGGGCTGGGTTCAGTCATGGGCAGTGGATAGGCAGATGGGATCT +
Preference number: 1 (lower is better)
Translates to: GTSARRRRMRAMDPG*GWVQSWAVDRQMGS
Trigger: AGATCCCATCTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCGTCTCCTCGCTGATGTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 90 bp GCTAGGTCCCTTTTCTTGGCAACCTGCACTGTCCAGAACTGGAGATaGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCA +
Preference number: 1 (lower is better)
Translates to: ARSLFLATCTVQNWR*RNTGRGDREGTPGP
Trigger: TGGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTCTGGACAGTGCAGGTTGCCAAGAAAAGGGACCTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR TCA 90 bp TCCCCAGGTGGTGGGGAGAGATGCAGATTCAAACCCACCAGTCCCTaGCTGGCTGCACCCAGGCTGCTCCTGAGAAAGCTTAGAGACTAC +
Preference number: 1 (lower is better)
Translates to: SPGGGERCRFKPTSP*LAAPRLLLRKLRDY
Trigger: GTAGTCTCTAAGCTTTCTCAGGAGCAGCCTGGGTGCAGCCAGTCAGGGACTGGTGGGTTTGAATCTGCATCTCTCCCCACCACCTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR TCA 90 bp AGGAAAAGTGTGGTTTTCACCTCTGCTCGGGCTACCACAGAGGCGTaGACTCTGTCTCAAGATGCTGCAGATGCCTCCCTCTCCTCCTGC +
Preference number: 1 (lower is better)
Translates to: RKSVVFTSARATTEA*TLSQDAADASLSSC
Trigger: GCAGGAGGAGAGGGAGGCATCTGCAGCATCTTGAGACAGAGTTCACGCCTCTGTGGTAGCCCGAGCAGAGGTGAAAACCACACTTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 90 bp CTCTATACACCAGGGACCCCAGCTCTTCAGGAAGGGCTGAGCCTTTaGCCTTCAAAGCTGTGGATGAGGAGATTCCCTGTCCTCATGCTT +
Preference number: 1 (lower is better)
Translates to: LYTPGTPALQEGLSL*PSKLWMRRFPVLML
Trigger: AAGCATGAGGACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTCCCTGGTGTATAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 90 bp AATGATGCTTCTCTCATCACACCAATGGTGAACATCACAGGCACTTaGCTAGGGAGGATGGACCGGAGCCACCCGGAGCTAGAAATCTCA +
Preference number: 1 (lower is better)
Translates to: NDASLITPMVNITGT*LGRMDRSHPELEIS
Trigger: TGAGATTTCTAGCTCCGGGTGGCTCCGGTCCATCCTCCCTAGCCAAGTGCCTGTGATGTTCACCATTGGTGTGATGAGAGAAGCATCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR GCA 90 bp CTATGTCTACTCTCACTTAGGAGGCTAGTCACTCCCATGAACCATTaGTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGT +
Preference number: 1 (lower is better)
Translates to: LCLLSLRRLVTPMNH*SPFQEEAAGKQEKC
Trigger: ACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGGTTCATGGGAGTGACTAGCCTCCTAAGTGAGAGTAGACATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 90 bp GACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTaGGAGCAAACACAGCCTATGGAGGTTAAAGAGGCTCCCGGCGTA +
Preference number: 1 (lower is better)
Translates to: DQRENRIEMSHHQQI*EQTQPMEVKEAPGV
Trigger: TACGCCGGGAGCCTCTTTAACCTCCATAGGCTGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR CCA 90 bp AAATGGTTCCTTTCAGACCTGAGAAAAAGACCAAGATGTCCAGTCTaGGCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCAGT +
Preference number: 1 (lower is better)
Translates to: KWFLSDLRKRPRCPV*AGDTELNPSTLSLS
Trigger: ACTGAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGCCCAGACTGGACATCTTGGTCTTTTTCTCAGGTCTGAAAGGAACCATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR-3UTR TCA 90 bp CATTTCACCTTGGGGAAAGGAGGGGTGCTGACGGCCATGGACGTTAGGATAGAGAGAGGGGAAGCGGGGTaGGTCATGGGCAGGGTGAGG +
Preference number: 2 (lower is better)
Translates to: HFTLGKGGVLTAMDVRIERGEAG*VMGRVR
Trigger: CCTCACCCTGCCCATGACTCACCCCGCTTCCCCTCT...CTCTATCCTAACGTCCATGGCCGTCAGCACCCCTCCTTTCCCCAAGGTGAAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR GCA 90 bp GACCCCAGCTCTTCAGGAAGGGCTGAGCCTTTGGCCTTCAAAGCTGTGGATGAGAGTCCTCGGGTGGGATaGGCAGGGCAGAGTACACCA +
Preference number: 2 (lower is better)
Translates to: DPSSSGRAEPLAFKAVDESPRVG*AGQSTP
Trigger: TGGTGTACTCTGCCCTGCGCATCCCACCCGAGGACT...CTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR CCA 90 bp CATTTCACCTTGGGGAAAGGAGGGGTGCTGACGGCCATGGACGTTAGGATAGAGCCCTCAGTCCTCGGGTaGGATGCGCAGGGCAGAGTA +
Preference number: 2 (lower is better)
Translates to: HFTLGKGGVLTAMDVRIEPSVLG*DAQGRV
Trigger: TACTCTGCCCTGCGCATCCCACCCGAGGACTGAGGG...CTCTATCCTAACGTCCATGGCCGTCAGCACCCCTCCTTTCCCCAAGGTGAAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR CCA 90 bp GCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCAGTAACTTCATCTCCCCACCAGTCCCTGACTaGCTGCACCCAGGCTGCTCC +
Preference number: 2 (lower is better)
Translates to: AGDTELNPSTLSLSNFISPPVPD*LHPGCS
Trigger: GGAGCAGCCTGGGTGCAGCCAGTCAGGGACTGGTGG...GGAGATGAAGTTACTGAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR GCA 90 bp TGCCATGGTAGTCTGACTCCTTCAGGGCACTGCCATGGAGTGGGCAGGCCCCCACTTTTCTTGGCAACCTaGACTGTCCAGAACTGGAGA +
Preference number: 2 (lower is better)
Translates to: CHGSLTPSGHCHGVGRPPLFLAT*TVQNWR
Trigger: TCTCCAGTTCTGGACAGTGCAGGTTGCCAAGAAAAG...TGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR-3UTR CCA 90 bp GACCCCAGCTCTTCAGGAAGGGCTGAGCCTTTGGCCTTCAAAGCTGTGGATGAGCAGTGGATAGGCAGATaGGATCTGTCGGGCGATCAG +
Preference number: 2 (lower is better)
Translates to: DPSSSGRAEPLAFKAVDEQWIGR*DLSGDQ
Trigger: CTGATCGCCCGACAGATCCCATCTGCCTATCCACTG...CTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CAA 90 bp TCTCTATACACCAGGGACCCCAGCTCTTCAGGAAGGGCTGAGCCTTaGGCCTTCAAAGCTGTGGATGAGGAGATTCCCTGTCCTCATGCT +
Preference number: 2 (lower is better)
Translates to: SLYTRDPSSSGRAEP*AFKAVDEEIPCPHA
Trigger: AGCATGAGGACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTCCCTGGTGTATAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR GCA 90 bp TGGTTGGAAGAAGCTGAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCAGTCCCTGACTGGCTaGACCCAGGCTGCTCCTGAG +
Preference number: 2 (lower is better)
Translates to: WLEEAEDKLPSFTSHRHVQSLTG*TQAAPE
Trigger: CTCAGGAGCAGCCTGGGTGCAGCCAGTCAGGGACTG...AACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTCAGCTTCTTCCAACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR CCA 90 bp CAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTGGGAGCAAACAGCAATGGACCCGGGCTaGGGCTGGGTTCAGTCATGG +
Preference number: 2 (lower is better)
Translates to: QRENRIEMSHHQQIWEQTAMDPG*GWVQSW
Trigger: CCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGC...TGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR CCA 90 bp GCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCAGTAACTTCATCTCCTGGAGCACTGACACATaGGGAGACCTGGACAACAAG +
Preference number: 2 (lower is better)
Translates to: AGDTELNPSTLSLSNFISWSTDT*GDLDNK
Trigger: CTTGTTGTCCAGGTCTCCCCATGTGTCAGTGCTCCA...GGAGATGAAGTTACTGAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR CCA 90 bp TGGTTGGAAGAAGCTGAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTTTCCCCCAGGGCCTaGGACCAAAGGGAAAACAGG +
Preference number: 2 (lower is better)
Translates to: WLEEAEDKLPSFTSHRHVLSPRA*DQRENR
Trigger: CCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAG...AACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTCAGCTTCTTCCAACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR TCA 90 bp CCATTGCTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGTGGTTTCTTCAAAGCTGTGGATaGGGAGATTCCCTGTCCTCA +
Preference number: 2 (lower is better)
Translates to: PLLPFPGRSGWETGKVWFLQSCG*GDSLSS
Trigger: TGAGGACAGGGAATCTCCTCATCCACAGCTTTGAAG...AAACCACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR GCA 90 bp CTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGTGGTTTTCACCTCTGCTGGTGGTGGGGAGAGATaGAGATTCAAACCCACCAGT +
Preference number: 2 (lower is better)
Translates to: LSRKKRLGNRKSVVFTSAGGGER*RFKPTS
Trigger: ACTGGTGGGTTTGAATCTGCATCTCTCCCCACCACC...AGCAGAGGTGAAAACCACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR CCA 90 bp AAGAAGCTGAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTCAGTCATGGGCAGTaGATAGGCAGATGGGATCTG +
Preference number: 2 (lower is better)
Translates to: KKLRINCHLSPHTAMFSPFSHGQ*IGRWDL
Trigger: CAGATCCCATCTGCCTATCCACTGCCCATGACTGAA...GGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTCAGCTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR CCA 90 bp CCATTGCTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGTGGTTTTGTGGCTTTCAAGAGTaGGAGAGTTCCTCTGTCTGT +
Preference number: 2 (lower is better)
Translates to: PLLPFPGRSGWETGKVWFCGFQE*ESSSVC
Trigger: ACAGACAGAGGAACTCTCCCACTCTTGAAAGCCACA...AAACCACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR GCA 90 bp AGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTAGATATAACCAGTCCCCAAGCATaGACTTCCTTCCTTTCCCCC +
Preference number: 2 (lower is better)
Translates to: RINCHLSPHTAMFSPLDITSPQA*TSFLSP
Trigger: GGGGGAAAGGAAGGAAGTGCATGCTTGGGGACTGGT...TATATCTAAGGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR TCA 90 bp AGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTAGATATATCATCACACCAATGGTaGACATCACAGGCACTTGGC +
Preference number: 2 (lower is better)
Translates to: RINCHLSPHTAMFSPLDISSHQW*TSQALG
Trigger: GCCAAGTGCCTGTGATGTTCACCATTGGTGTGATGA...TATATCTAAGGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR-3UTR CCA 90 bp AGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTAGATATAGTCCAGAACTGGAGATaGAGAAATACGGGACGAGGA +
Preference number: 2 (lower is better)
Translates to: RINCHLSPHTAMFSPLDIVQNWR*RNTGRG
Trigger: TCCTCGTCCCGTATTTCTCCATCTCCAGTTCTGGAC...TATATCTAAGGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 72 bp GCGAGGAGACGGAGGATGAGGGCAATGGACCCGGGCTaGGGCTGGGTTCAGTCATGGGCAGTGGATAGGCAG +
Preference number: 3 (lower is better)
Translates to: ARRRRMRAMDPG*GWVQSWAVDRQ
Trigger: CTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCGTCTCCTCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR GCA 72 bp CTGCGATGCCATGGTAGTCTGACTCCTTCAGGGCACTaGCATGGAGTGGGCAGGCCCCCACAGCACCCTCCA +
Preference number: 3 (lower is better)
Translates to: LRCHGSLTPSGH*HGVGRPPQHPP
Trigger: TGGAGGGTGCTGTGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCATCGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR CCA 72 bp CTCCTGCCAGGGAGCCTCTCTGAGGGCTGCAGGCACTaGACGACCAGTTGTAGGCAGGCACGTGTCCTGCTA +
Preference number: 3 (lower is better)
Translates to: LLPGSLSEGCRH*TTSCRQARVLL
Trigger: TAGCAGGACACGTGCCTGCCTACAACTGGTCGTCCAGTGCCTGCAGCCCTCAGAGAGGCTCCCTGGCAGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR TCA 72 bp ATGTCTGCCCTCTGGGCCTGCGATGCCATGGTAGTCTaGCTCCTTCAGGGCACTGCCATGGAGTGGGCAGGC +
Preference number: 3 (lower is better)
Translates to: MSALWACDAMVV*LLQGTAMEWAG
Trigger: GCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCATCGCAGGCCCAGAGGGCAGACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR CCA 72 bp AGACGGAGGATGAGGGCAATGGACCCGGGCTGGGGCTaGGTTCAGTCATGGGCAGTGGATAGGCAGATGGGA +
Preference number: 3 (lower is better)
Translates to: RRRMRAMDPGWG*VQSWAVDRQMG
Trigger: TCCCATCTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR GCA 72 bp GGCTACCACAGAGGCGTGAACTCTGTCTCAAGATGCTaGAGATGCCTCCCTCTCCTCCTGCCAGGGAGCCTC +
Preference number: 3 (lower is better)
Translates to: GYHRGVNSVSRC*RCLPLLLPGSL
Trigger: GAGGCTCCCTGGCAGGAGGAGAGGGAGGCATCTGCAGCATCTTGAGACAGAGTTCACGCCTCTGTGGTAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 72 bp CCAGGGACCCCAGCTCTTCAGGAAGGGCTGAGCCTTTaGCCTTCAAAGCTGTGGATGAGGAGATTCCCTGTC +
Preference number: 3 (lower is better)
Translates to: PGTPALQEGLSL*PSKLWMRRFPV
Trigger: GACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTCCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR TCA 72 bp GTGGTTTTCACCTCTGCTCGGGCTACCACAGAGGCGTaGACTCTGTCTCAAGATGCTGCAGATGCCTCCCTC +
Preference number: 3 (lower is better)
Translates to: VVFTSARATTEA*TLSQDAADASL
Trigger: GAGGGAGGCATCTGCAGCATCTTGAGACAGAGTTCACGCCTCTGTGGTAGCCCGAGCAGAGGTGAAAACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 72 bp TCTCTCATCACACCAATGGTGAACATCACAGGCACTTaGCTAGGGAGGATGGACCGGAGCCACCCGGAGCTA +
Preference number: 3 (lower is better)
Translates to: SLITPMVNITGT*LGRMDRSHPEL
Trigger: TAGCTCCGGGTGGCTCCGGTCCATCCTCCCTAGCCAAGTGCCTGTGATGTTCACCATTGGTGTGATGAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 72 bp CTTTTCTTGGCAACCTGCACTGTCCAGAACTGGAGATaGAGAAATACGGGACGAGGAGATCGGGAGGGCACC +
Preference number: 3 (lower is better)
Translates to: LFLATCTVQNWR*RNTGRGDREGT
Trigger: GGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTCTGGACAGTGCAGGTTGCCAAGAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR GCA 72 bp CTCTCACTTAGGAGGCTAGTCACTCCCATGAACCATTaGTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAG +
Preference number: 3 (lower is better)
Translates to: LSLRRLVTPMNH*SPFQEEAAGKQ
Trigger: CTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGGTTCATGGGAGTGACTAGCCTCCTAAGTGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 72 bp CTTCAGGAAGGGCTGAGCCTTTGGCCTTCAAAGCTGTaGATGAGGAGATTCCCTGTCCTCATGCTTGGTTGG +
Preference number: 3 (lower is better)
Translates to: LQEGLSLWPSKL*MRRFPVLMLGW
Trigger: CCAACCAAGCATGAGGACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CCA 72 bp CTTTCAGACCTGAGAAAAAGACCAAGATGTCCAGTCTaGGCAGGAGACACTGAACTGAACCCATCTACCCTC +
Preference number: 3 (lower is better)
Translates to: LSDLRKRPRCPV*AGDTELNPSTL
Trigger: GAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGCCCAGACTGGACATCTTGGTCTTTTTCTCAGGTCTGAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR CCA 72 bp GAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTaGGAGCAAACACAGCCTATGGAGGTTAAAGAGGCT +
Preference number: 3 (lower is better)
Translates to: ENRIEMSHHQQI*EQTQPMEVKEA
Trigger: AGCCTCTTTAACCTCCATAGGCTGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CCA 90 bp GCGCAGGGCAGAGTACACCATCACCCGACTGTCCTCCTGCCGGCGGCCTGCAGACACGAAAGGCTGCGCTaGATACTTCGGAGGGAGCCT +
Preference number: 4 (lower is better)
Translates to: AQGRVHHHPTVLLPAACRHERLR*ILRREP
Trigger: AGGCTCCCTCCGAAGTATCCAGCGCAGCCTTTCGTG...TCTGCAGGCCGCCGGCAGGAGGACAGTCGGGTGATGGTGTACTCTGCCCTGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS-3UTR TCA 90 bp GAACTGGAGATGGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCCCCGATGTCAGAAGGTaGCTCCCAACTACCAGGCCC +
Preference number: 4 (lower is better)
Translates to: ELEMEKYGTRRSGGHPRPPDVRR*LPTTRP
Trigger: GGGCCTGGTAGTTGGGAGTCACCTTCTGACATCGGG...GGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR TCA 90 bp GAACTGGAGATGGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCCTGGAGCCGTGCATCTaGTCGGTCTGTCACATGGAC +
Preference number: 4 (lower is better)
Translates to: ELEMEKYGTRRSGGHPRPLEPCI*SVCHMD
Trigger: GTCCATGTGACAGACCGATCAGATGCACGGCTCCAG...GGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR TCA 90 bp GAACTGGAGATGGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCGCCCCATGGAAACGGTaGCTGCATAGATGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: ELEMEKYGTRRSGGHPRPAPWKR*LHRWAA
Trigger: TGCTGCCCATCTATGCAGTCACCGTTTCCATGGGGC...GGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CCA 90 bp TGCCATGGTAGTCTGACTCCTTCAGGGCACTGCCATGGAGTGGGCAGGCCCCCAGAAAAGGGAGAAGGCTaGGCCGAACGCGACGAAGGT +
Preference number: 4 (lower is better)
Translates to: CHGSLTPSGHCHGVGRPPEKGEG*AERDEG
Trigger: ACCTTCGTCGCGTTCGGCCCAGCCTTCTCCCTTTTC...TGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR GCA 90 bp GGGCAGGGTGAGGGTGGAGCACTGACACATGGGGAGACCTGGACAACAAGGGGGCATGGAAACGGTGACTaGATAGATGGGCAGCAGGCT +
Preference number: 4 (lower is better)
Translates to: GQGEGGALTHGETWTTRGHGNGD*IDGQQA
Trigger: AGCCTGCTGCCCATCTATGCAGTCACCGTTTCCATG...CCCCCTTGTTGTCCAGGTCTCCCCATGTGTCAGTGCTCCACCCTCACCCTGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS-3UTR GCA 90 bp TGCCATGGTAGTCTGACTCCTTCAGGGCACTGCCATGGAGTGGGCAGGCCCCCACGAACGCGACGAAGGTaGATCCGAAAAACACAGCAG +
Preference number: 4 (lower is better)
Translates to: CHGSLTPSGHCHGVGRPPRTRRR*IRKTQQ
Trigger: CTGCTGTGTTTTTCGGATGCACCTTCGTCGCGTTCG...TGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CCA 90 bp TGCCATGGTAGTCTGACTCCTTCAGGGCACTGCCATGGAGTGGGCAGGCCCCCATCTGTCGGATGGAGATaGGTGATCTTCCGTCCTCAC +
Preference number: 4 (lower is better)
Translates to: CHGSLTPSGHCHGVGRPPSVGWR*VIFRPH
Trigger: GTGAGGACGGAAGATCACCCATCTCCATCCGACAGA...TGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR GCA 90 bp CCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCAAGTCCTCGGGTGGGATaGGCAGGGCAGAGTACACCA +
Preference number: 4 (lower is better)
Translates to: PFPQGLGPKGKQDRNEPPSPRVG*AGQSTP
Trigger: TGGTGTACTCTGCCCTGCGCATCCCACCCGAGGACT...TGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056710.10
CDS-3UTR CCA 90 bp GAACTGGAGATGGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCGATCGGTCTGTCACATaGACCAAGATGAACCAGACC +
Preference number: 4 (lower is better)
Translates to: ELEMEKYGTRRSGGHPRPDRSVT*TKMNQT
Trigger: GGTCTGGTTCATCTTGGTCCATGTGACAGACCGATC...GGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR TCA 90 bp CCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGCTGGAGCCGTGCATCTaGTCGGTCTGTCACATGGAC +
Preference number: 4 (lower is better)
Translates to: PRAWDQRENRIEMSHHQQLEPCI*SVCHMD
Trigger: GTCCATGTGACAGACCGATCAGATGCACGGCTCCAG...CTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR TCA 90 bp TTCCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCCCGATGTCAGAAGGTaGCTCCCAACTACCAGGCCC +
Preference number: 4 (lower is better)
Translates to: FLSPRAWDQRENRIEMSHPDVRR*LPTTRP
Trigger: GGGCCTGGTAGTTGGGAGTCACCTTCTGACATCGGG...GTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR TCA 90 bp CCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGGCCCCATGGAAACGGTaGCTGCATAGATGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: PRAWDQRENRIEMSHHQQAPWKR*LHRWAA
Trigger: TGCTGCCCATCTATGCAGTCACCGTTTCCATGGGGC...CTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
3UTR CAA 72 bp TTCTCTCATCACACCAATGGTGAACATCACAGGCACTaGGCTAGGGAGGATGGACCGGAGCCACCCGGAGCT +
Preference number: 4 (lower is better)
Translates to: FSHHTNGEHHRH*AREDGPEPPGA
Trigger: AGCTCCGGGTGGCTCCGGTCCATCCTCCCTAGCCAAGTGCCTGTGATGTTCACCATTGGTGTGATGAGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
3UTR CAA 72 bp ACCAGGGACCCCAGCTCTTCAGGAAGGGCTGAGCCTTaGGCCTTCAAAGCTGTGGATGAGGAGATTCCCTGT +
Preference number: 4 (lower is better)
Translates to: TRDPSSSGRAEP*AFKAVDEEIPC
Trigger: ACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTCCCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS-3UTR TCA 90 bp CCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCGGATGGAGATGGGTaGTCTTCCGTCCTCACTCAG +
Preference number: 4 (lower is better)
Translates to: PFPQGLGPKGKQDRNEPPSDGDG*SSVLTQ
Trigger: CTGAGTGAGGACGGAAGATCACCCATCTCCATCCGA...TGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CCA 90 bp CCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCAGATCCCAACCACACCTaGCCCAAGTGCATCAGCCAA +
Preference number: 4 (lower is better)
Translates to: PFPQGLGPKGKQDRNEPPDPNHT*PKCISQ
Trigger: TTGGCTGATGCACTTGGGCCAGGTGTGGTTGGGATC...TGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR GCA 90 bp CCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCACGAACGCGACGAAGGTaGATCCGAAAAACACAGCAG +
Preference number: 4 (lower is better)
Translates to: PFPQGLGPKGKQDRNEPPRTRRR*IRKTQQ
Trigger: CTGCTGTGTTTTTCGGATGCACCTTCGTCGCGTTCG...TGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CCA 90 bp CCATTGCTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGTGGTTTGAAAAGGGAGAAGGCTaGGCCGAACGCGACGAAGGT +
Preference number: 4 (lower is better)
Translates to: PLLPFPGRSGWETGKVWFEKGEG*AERDEG
Trigger: ACCTTCGTCGCGTTCGGCCCAGCCTTCTCCCTTTTC...AAACCACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS-3UTR CCA 90 bp AGATGTCCAGTCTGGGCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCTCTGTCGGATGGAGATaGGTGATCTTCCGTCCTCAC +
Preference number: 4 (lower is better)
Translates to: RCPVWAGDTELNPSTLSLSVGWR*VIFRPH
Trigger: GTGAGGACGGAAGATCACCCATCTCCATCCGACAGA...GAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGCCCAGACTGGACATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR TCA 90 bp AGATGTCCAGTCTGGGCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCTCACATGGACCAAGATaGACCAGACCACAGAAGCCA +
Preference number: 4 (lower is better)
Translates to: RCPVWAGDTELNPSTLSLSHGPR*TRPQKP
Trigger: TGGCTTCTGTGGTCTGGTTCATCTTGGTCCATGTGA...GAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGCCCAGACTGGACATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CCA 90 bp AGCTCTTCAGGAAGGGCTGAGCCTTTGGCCTTCAAAGCTGTGGATGAGGAGATTATCAGGAGGCCATACTaGAGCCGTGCATCTGATCGG +
Preference number: 4 (lower is better)
Translates to: SSSGRAEPLAFKAVDEEIIRRPY*SRASDR
Trigger: CCGATCAGATGCACGGCTCCAGTATGGCCTCCTGAT...AATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS-3UTR CCA 90 bp TTCCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACAGGCCATCTGTCGGATaGAGATGGGTGATCTTCCGT +
Preference number: 4 (lower is better)
Translates to: FLSPRAWDQRENRIEMSHRPSVG*RWVIFR
Trigger: ACGGAAGATCACCCATCTCCATCCGACAGATGGCCT...GTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR GCA 90 bp AAGAAGCTGAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCCCTTACACGAAAGGCTaGGCTGGATACTTCGGAGGG +
Preference number: 4 (lower is better)
Translates to: KKLRINCHLSPHTAMFSPPYTKG*AGYFGG
Trigger: CCCTCCGAAGTATCCAGCGCAGCCTTTCGTGTAAGG...GGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTCAGCTTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS-3UTR CCA 90 bp CCCAGGCTGCTCCTGAGAAAGCTTAGAGACTACAGGTCACAAATGGACAACGCCACTCCCCAAAAGGTGTaGAGCAGGATAATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: PRLLLRKLRDYRSQMDNATPQKV*SRIMAA
Trigger: AGCAGCCATTATCCTGCTCCACACCTTTTGGGGAGT...GGCGTTGTCCATTTGTGACCTGTAGTCTCTAAGCTTTCTCAGGAGCAGCCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS-3UTR CCA 90 bp TTCCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACACTCCCCAAAAGGTGTaGAGCAGGATAATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: FLSPRAWDQRENRIEMSHTPQKV*SRIMAA
Trigger: AGCAGCCATTATCCTGCTCCACACCTTTTGGGGAGT...GTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR GCA 90 bp CATTTCACCTTGGGGAAAGGAGGGGTGCTGACGGCCATGGACGTTAGGATAGAGCACACCTGGCCCAAGTaGATCAGCCAAAATATTGAT +
Preference number: 4 (lower is better)
Translates to: HFTLGKGGVLTAMDVRIEHTWPK*ISQNID
Trigger: ATCAATATTTTGGCTGATGCACTTGGGCCAGGTGTG...CTCTATCCTAACGTCCATGGCCGTCAGCACCCCTCCTTTCCCCAAGGTGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR GCA 90 bp CCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGCACACCTGGCCCAAGTaGATCAGCCAAAATATTGAT +
Preference number: 4 (lower is better)
Translates to: PRAWDQRENRIEMSHHQQHTWPK*ISQNID
Trigger: ATCAATATTTTGGCTGATGCACTTGGGCCAGGTGTG...CTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CCA 90 bp AGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTGGGAGCAAACACAGCACGAAAGGCTGCGCTaGATACTTCGGAGGGAGCCT +
Preference number: 4 (lower is better)
Translates to: RENRIEMSHHQQIWEQTQHERLR*ILRREP
Trigger: AGGCTCCCTCCGAAGTATCCAGCGCAGCCTTTCGTG...CTGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR TCA 90 bp CTCCTGAGAAAGCTTAGAGACTACAGGTCACAAATGGACAACGCCAAACCCGGATCACATGGACCAAGATaGACCAGACCACAGAAGCCA +
Preference number: 4 (lower is better)
Translates to: LLRKLRDYRSQMDNAKPGSHGPR*TRPQKP
Trigger: TGGCTTCTGTGGTCTGGTTCATCTTGGTCCATGTGA...TCCGGGTTTGGCGTTGTCCATTTGTGACCTGTAGTCTCTAAGCTTTCTCAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS-3UTR CCA 90 bp AAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTGGGAGCAAACACAGATCCCAACCACACCTaGCCCAAGTGCATCAGCCAA +
Preference number: 4 (lower is better)
Translates to: KGKQDRNEPPSADLGANTDPNHT*PKCISQ
Trigger: TTGGCTGATGCACTTGGGCCAGGTGTGGTTGGGATC...TGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CCA 90 bp GAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTAGATATGATCGGTCTGTCACATaGACCAAGATGAACCAGACC +
Preference number: 4 (lower is better)
Translates to: EDKLPSFTSHRHVLSLRYDRSVT*TKMNQT
Trigger: GGTCTGGTTCATCTTGGTCCATGTGACAGACCGATC...ATATCTAAGGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS-3UTR CCA 90 bp AAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTGGGAGCAAACACAAGGCCATCTGTCGGATaGAGATGGGTGATCTTCCGT +
Preference number: 4 (lower is better)
Translates to: KGKQDRNEPPSADLGANTRPSVG*RWVIFR
Trigger: ACGGAAGATCACCCATCTCCATCCGACAGATGGCCT...TGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS GCA 90 bp GCCTCCGGCTGTGATGAACGCCCAGAGCCCCATGGAAACGGTGACTaGATAGATGGGCAGCAGGCTAGCCTCATACCAGGGGTTCAGGAA +
Preference number: 5 (lower is better)
Translates to: ASGCDERPEPHGNGD*IDGQQASLIPGVQE
Trigger: TTCCTGAACCCCTGGTATGAGGCTAGCCTGCTGCCCATCTATGCAGTCACCGTTTCCATGGGGCTCTGGGCGTTCATCACAGCCGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS CCA 90 bp CCGAAGTGGGTCTCCAGCTACAGTGATCAGGAAAAGGGAGAAGGCTaGGCCGAACGCGACGAAGGTGCATCCGAAAAACACAGCAGCCCC +
Preference number: 5 (lower is better)
Translates to: PKWVSSYSDQEKGEG*AERDEGASEKHSSP
Trigger: GGGGCTGCTGTGTTTTTCGGATGCACCTTCGTCGCGTTCGGCCCAGCCTTCTCCCTTTTCCTGATCACTGTAGCTGGAGACCCACTTCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
ENSMUST00000197081.2
CDS CCA 90 bp GACCAGCCAGAAAAAGGCTCCCGCCACCAGGATGATAACCCGAAGTaGGTCTCCAGCTACAGTGATCAGGAAAAGGGAGAAGGCTGGGCC +
Preference number: 5 (lower is better)
Translates to: DQPEKGSRHQDDNPK*VSSYSDQEKGEGWA
Trigger: GGCCCAGCCTTCTCCCTTTTCCTGATCACTGTAGCTGGAGACCCACTTCGGGTTATCATCCTGGTGGCGGGAGCCTTTTTCTGGCTGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS TCA 90 bp GACAGCAGCACCAAAAATCAGGAGGCCATACTGGAGCCGTGCATCTaGTCGGTCTGTCACATGGACCAAGATGAACCAGACCACAGAAGC +
Preference number: 5 (lower is better)
Translates to: DSSTKNQEAILEPCI*SVCHMDQDEPDHRS
Trigger: GCTTCTGTGGTCTGGTTCATCTTGGTCCATGTGACAGACCGATCAGATGCACGGCTCCAGTATGGCCTCCTGATTTTTGGTGCTGCTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS CCA 90 bp CGTCTCCTCTCACAGGCATCAAAGAACACAACTCCCCAAAAGGTGTaGAGCAGGATAATGGCTGCTGTCAGAAAGGCTGAAGTCAGGAAG +
Preference number: 5 (lower is better)
Translates to: RLLSQASKNTTPQKV*SRIMAAVRKAEVRK
Trigger: CTTCCTGACTTCAGCCTTTCTGACAGCAGCCATTATCCTGCTCCACACCTTTTGGGGAGTTGTGTTCTTTGATGCCTGTGAGAGGAGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CAA 90 bp CCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGGCATCAGCCAAAATATaGATAACAGAGAAGACACCA +
Preference number: 5 (lower is better)
Translates to: PRAWDQRENRIEMSHHQQASAKI*ITEKTP
Trigger: TGGTGTCTTCTCTGTTATCAATATTTTGGCTGATGC...CTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS-3UTR CAA 90 bp CTCCTGAGAAAGCTTAGAGACTACAGGTCACAAATGGACAACGCCAAACCCGGAGCATCAGCCAAAATATaGATAACAGAGAAGACACCA +
Preference number: 5 (lower is better)
Translates to: LLRKLRDYRSQMDNAKPGASAKI*ITEKTP
Trigger: TGGTGTCTTCTCTGTTATCAATATTTTGGCTGATGC...TCCGGGTTTGGCGTTGTCCATTTGTGACCTGTAGTCTCTAAGCTTTCTCAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015894.12
CDS GCA 72 bp CGCAGGGCAGAGTACACCATCACCCGACTGTCCTCCTaGCGGCGGCACGAAAGGCTGCGCTGGATACTTCGG +
Preference number: 6 (lower is better)
Translates to: RRAEYTITRLSS*RRHERLRWILR
Trigger: CCGAAGTATCCAGCGCAGCCTTTCGTGCCGCCGGCAGGAGGACAGTCGGGTGATGGTGTACTCTGCCCTGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056710.10
CDS CCA 72 bp CGACTGTCCTCCTGCCGGCGGCACGAAAGGCTGCGCTaGATACTTCGGAGGGAGCCTCCGGCTGTGATGAAC +
Preference number: 6 (lower is better)
Translates to: RLSSCRRHERLR*ILRREPPAVMN
Trigger: GTTCATCACAGCCGGAGGCTCCCTCCGAAGTATCCAGCGCAGCCTTTCGTGCCGCCGGCAGGAGGACAGTCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056710.10
CDS GCA 72 bp TGTGATGAACGCCCAGAGCCCCATGGAAACGGTGACTaGATAGATGGGCAGCAGGCTAGCCTCATACCAGGG +
Preference number: 6 (lower is better)
Translates to: CDERPEPHGNGD*IDGQQASLIPG
Trigger: CCCTGGTATGAGGCTAGCCTGCTGCCCATCTATGCAGTCACCGTTTCCATGGGGCTCTGGGCGTTCATCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS TCA 72 bp CAGGGGTTCAGGAATGTCAGTCCCGATGTCAGAAGGTaGCTCCCAACTACCAGGCCCAAAGCCCAGTACCGT +
Preference number: 6 (lower is better)
Translates to: QGFRNVSPDVRR*LPTTRPKAQYR
Trigger: ACGGTACTGGGCTTTGGGCCTGGTAGTTGGGAGTCACCTTCTGACATCGGGACTGACATTCCTGAACCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS CCA 72 bp GTCTCCAGCTACAGTGATCAGGAAAAGGGAGAAGGCTaGGCCGAACGCGACGAAGGTGCATCCGAAAAACAC +
Preference number: 6 (lower is better)
Translates to: VSSYSDQEKGEG*AERDEGASEKH
Trigger: GTGTTTTTCGGATGCACCTTCGTCGCGTTCGGCCCAGCCTTCTCCCTTTTCCTGATCACTGTAGCTGGAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
ENSMUST00000197081.2
CDS CCA 72 bp CCATACTGGAGCCGTGCATCTGATCGGTCTGTCACATaGACCAAGATGAACCAGACCACAGAAGCCAAGAGC +
Preference number: 6 (lower is better)
Translates to: PYWSRASDRSVT*TKMNQTTEAKS
Trigger: GCTCTTGGCTTCTGTGGTCTGGTTCATCTTGGTCCATGTGACAGACCGATCAGATGCACGGCTCCAGTATGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS CCA 72 bp ACAGAGACAGCAGCACCAAAAATCAGGAGGCCATACTaGAGCCGTGCATCTGATCGGTCTGTCACATGGACC +
Preference number: 6 (lower is better)
Translates to: TETAAPKIRRPY*SRASDRSVTWT
Trigger: GGTCCATGTGACAGACCGATCAGATGCACGGCTCCAGTATGGCCTCCTGATTTTTGGTGCTGCTGTCTCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS CCA 72 bp GGAACACTTCCCCGCCACCAGGATGATAACCCGAAGTaGGTCTCCAGCTACAGTGATCAGGAAAAGGGAGAA +
Preference number: 6 (lower is better)
Translates to: GTLPRHQDDNPK*VSSYSDQEKGE
Trigger: TTCTCCCTTTTCCTGATCACTGTAGCTGGAGACCCACTTCGGGTTATCATCCTGGTGGCGGGGAAGTGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197081.2
CDS CCA 72 bp GAAAAAGGCTCCCGCCACCAGGATGATAACCCGAAGTaGGTCTCCAGCTACAGTGATCAGGAAAAGGGAGAA +
Preference number: 6 (lower is better)
Translates to: EKGSRHQDDNPK*VSSYSDQEKGE
Trigger: TTCTCCCTTTTCCTGATCACTGTAGCTGGAGACCCACTTCGGGTTATCATCCTGGTGGCGGGAGCCTTTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS CCA 72 bp CGAAGGACAGACCAGAAACATAGGCCATCTGTCGGATaGAGATGGGTGATCTTCCGTCCTCACTCAGTGATG +
Preference number: 6 (lower is better)
Translates to: RRTDQKHRPSVG*RWVIFRPHSVM
Trigger: CATCACTGAGTGAGGACGGAAGATCACCCATCTCCATCCGACAGATGGCCTATGTTTCTGGTCTGTCCTTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10
CDS CCA 72 bp TCACAGGCATCAAAGAACACAACTCCCCAAAAGGTGTaGAGCAGGATAATGGCTGCTGTCAGAAAGGCTGAA +
Preference number: 6 (lower is better)
Translates to: SQASKNTTPQKV*SRIMAAVRKAE
Trigger: TTCAGCCTTTCTGACAGCAGCCATTATCCTGCTCCACACCTTTTGGGGAGTTGTGTTCTTTGATGCCTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015894.12
ENSMUST00000056710.10