Pregenerated sensors for APH1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015750Ensembl transcript IDs: ENSMUST00000015894.12, ENSMUST00000056710.10, ENSMUST00000197081.2
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGAGGATGAGGGCAATGGACCCGGGCTGGGGCTGGGTTCAGTCATaGGCAGTGGATAGGCAGATGGGATCTGTCGGGCGATCAGTCCAG | + |
|
Preference number: 1 (lower is better) Translates to: RRMRAMDPGWGWVQS*AVDRQMGSVGRSVQ Trigger: CTGGACTGATCGCCCGACAGATCCCATCTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 90 bp | TCAGCGAGGAGACGGAGGATGAGGGCAATGGACCCGGGCTGGGGCTaGGTTCAGTCATGGGCAGTGGATAGGCAGATGGGATCTGTCGGG | + |
|
Preference number: 1 (lower is better) Translates to: SARRRRMRAMDPGWG*VQSWAVDRQMGSVG Trigger: CCCGACAGATCCCATCTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCGTCTCCTCGCTGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 90 bp | CTCCCTCTCCTCCTGCCAGGGAGCCTCTCTGAGGGCTGCAGGCACTaGACGACCAGTTGTAGGCAGGCACGTGTCCTGCTAGGTAACCCT | + |
|
Preference number: 1 (lower is better) Translates to: LPLLLPGSLSEGCRH*TTSCRQARVLLGNP Trigger: AGGGTTACCTAGCAGGACACGTGCCTGCCTACAACTGGTCGTCCAGTGCCTGCAGCCCTCAGAGAGGCTCCCTGGCAGGAGGAGAGGGAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR GCA 90 bp | CCTCTGGGCCTGCGATGCCATGGTAGTCTGACTCCTTCAGGGCACTaGCATGGAGTGGGCAGGCCCCCACAGCACCCTCCATTTCACCTT | + |
|
Preference number: 1 (lower is better) Translates to: PLGLRCHGSLTPSGH*HGVGRPPQHPPFHL Trigger: AAGGTGAAATGGAGGGTGCTGTGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCATCGCAGGCCCAGAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR CCA 90 bp | GGCACATCAGCGAGGAGACGGAGGATGAGGGCAATGGACCCGGGCTaGGGCTGGGTTCAGTCATGGGCAGTGGATAGGCAGATGGGATCT | + |
|
Preference number: 1 (lower is better) Translates to: GTSARRRRMRAMDPG*GWVQSWAVDRQMGS Trigger: AGATCCCATCTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCGTCTCCTCGCTGATGTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 90 bp | GCTAGGTCCCTTTTCTTGGCAACCTGCACTGTCCAGAACTGGAGATaGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCA | + |
|
Preference number: 1 (lower is better) Translates to: ARSLFLATCTVQNWR*RNTGRGDREGTPGP Trigger: TGGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTCTGGACAGTGCAGGTTGCCAAGAAAAGGGACCTAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR TCA 90 bp | TCCCCAGGTGGTGGGGAGAGATGCAGATTCAAACCCACCAGTCCCTaGCTGGCTGCACCCAGGCTGCTCCTGAGAAAGCTTAGAGACTAC | + |
|
Preference number: 1 (lower is better) Translates to: SPGGGERCRFKPTSP*LAAPRLLLRKLRDY Trigger: GTAGTCTCTAAGCTTTCTCAGGAGCAGCCTGGGTGCAGCCAGTCAGGGACTGGTGGGTTTGAATCTGCATCTCTCCCCACCACCTGGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR TCA 90 bp | AGGAAAAGTGTGGTTTTCACCTCTGCTCGGGCTACCACAGAGGCGTaGACTCTGTCTCAAGATGCTGCAGATGCCTCCCTCTCCTCCTGC | + |
|
Preference number: 1 (lower is better) Translates to: RKSVVFTSARATTEA*TLSQDAADASLSSC Trigger: GCAGGAGGAGAGGGAGGCATCTGCAGCATCTTGAGACAGAGTTCACGCCTCTGTGGTAGCCCGAGCAGAGGTGAAAACCACACTTTTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 90 bp | CTCTATACACCAGGGACCCCAGCTCTTCAGGAAGGGCTGAGCCTTTaGCCTTCAAAGCTGTGGATGAGGAGATTCCCTGTCCTCATGCTT | + |
|
Preference number: 1 (lower is better) Translates to: LYTPGTPALQEGLSL*PSKLWMRRFPVLML Trigger: AAGCATGAGGACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTCCCTGGTGTATAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 90 bp | AATGATGCTTCTCTCATCACACCAATGGTGAACATCACAGGCACTTaGCTAGGGAGGATGGACCGGAGCCACCCGGAGCTAGAAATCTCA | + |
|
Preference number: 1 (lower is better) Translates to: NDASLITPMVNITGT*LGRMDRSHPELEIS Trigger: TGAGATTTCTAGCTCCGGGTGGCTCCGGTCCATCCTCCCTAGCCAAGTGCCTGTGATGTTCACCATTGGTGTGATGAGAGAAGCATCATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR GCA 90 bp | CTATGTCTACTCTCACTTAGGAGGCTAGTCACTCCCATGAACCATTaGTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGT | + |
|
Preference number: 1 (lower is better) Translates to: LCLLSLRRLVTPMNH*SPFQEEAAGKQEKC Trigger: ACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGGTTCATGGGAGTGACTAGCCTCCTAAGTGAGAGTAGACATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 90 bp | GACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTaGGAGCAAACACAGCCTATGGAGGTTAAAGAGGCTCCCGGCGTA | + |
|
Preference number: 1 (lower is better) Translates to: DQRENRIEMSHHQQI*EQTQPMEVKEAPGV Trigger: TACGCCGGGAGCCTCTTTAACCTCCATAGGCTGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR CCA 90 bp | AAATGGTTCCTTTCAGACCTGAGAAAAAGACCAAGATGTCCAGTCTaGGCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCAGT | + |
|
Preference number: 1 (lower is better) Translates to: KWFLSDLRKRPRCPV*AGDTELNPSTLSLS Trigger: ACTGAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGCCCAGACTGGACATCTTGGTCTTTTTCTCAGGTCTGAAAGGAACCATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR-3UTR TCA 90 bp | CATTTCACCTTGGGGAAAGGAGGGGTGCTGACGGCCATGGACGTTAGGATAGAGAGAGGGGAAGCGGGGTaGGTCATGGGCAGGGTGAGG | + |
|
Preference number: 2 (lower is better) Translates to: HFTLGKGGVLTAMDVRIERGEAG*VMGRVR Trigger: CCTCACCCTGCCCATGACTCACCCCGCTTCCCCTCT...CTCTATCCTAACGTCCATGGCCGTCAGCACCCCTCCTTTCCCCAAGGTGAAATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR GCA 90 bp | GACCCCAGCTCTTCAGGAAGGGCTGAGCCTTTGGCCTTCAAAGCTGTGGATGAGAGTCCTCGGGTGGGATaGGCAGGGCAGAGTACACCA | + |
|
Preference number: 2 (lower is better) Translates to: DPSSSGRAEPLAFKAVDESPRVG*AGQSTP Trigger: TGGTGTACTCTGCCCTGCGCATCCCACCCGAGGACT...CTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR CCA 90 bp | CATTTCACCTTGGGGAAAGGAGGGGTGCTGACGGCCATGGACGTTAGGATAGAGCCCTCAGTCCTCGGGTaGGATGCGCAGGGCAGAGTA | + |
|
Preference number: 2 (lower is better) Translates to: HFTLGKGGVLTAMDVRIEPSVLG*DAQGRV Trigger: TACTCTGCCCTGCGCATCCCACCCGAGGACTGAGGG...CTCTATCCTAACGTCCATGGCCGTCAGCACCCCTCCTTTCCCCAAGGTGAAATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR CCA 90 bp | GCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCAGTAACTTCATCTCCCCACCAGTCCCTGACTaGCTGCACCCAGGCTGCTCC | + |
|
Preference number: 2 (lower is better) Translates to: AGDTELNPSTLSLSNFISPPVPD*LHPGCS Trigger: GGAGCAGCCTGGGTGCAGCCAGTCAGGGACTGGTGG...GGAGATGAAGTTACTGAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR GCA 90 bp | TGCCATGGTAGTCTGACTCCTTCAGGGCACTGCCATGGAGTGGGCAGGCCCCCACTTTTCTTGGCAACCTaGACTGTCCAGAACTGGAGA | + |
|
Preference number: 2 (lower is better) Translates to: CHGSLTPSGHCHGVGRPPLFLAT*TVQNWR Trigger: TCTCCAGTTCTGGACAGTGCAGGTTGCCAAGAAAAG...TGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR-3UTR CCA 90 bp | GACCCCAGCTCTTCAGGAAGGGCTGAGCCTTTGGCCTTCAAAGCTGTGGATGAGCAGTGGATAGGCAGATaGGATCTGTCGGGCGATCAG | + |
|
Preference number: 2 (lower is better) Translates to: DPSSSGRAEPLAFKAVDEQWIGR*DLSGDQ Trigger: CTGATCGCCCGACAGATCCCATCTGCCTATCCACTG...CTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CAA 90 bp | TCTCTATACACCAGGGACCCCAGCTCTTCAGGAAGGGCTGAGCCTTaGGCCTTCAAAGCTGTGGATGAGGAGATTCCCTGTCCTCATGCT | + |
|
Preference number: 2 (lower is better) Translates to: SLYTRDPSSSGRAEP*AFKAVDEEIPCPHA Trigger: AGCATGAGGACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTCCCTGGTGTATAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR GCA 90 bp | TGGTTGGAAGAAGCTGAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCAGTCCCTGACTGGCTaGACCCAGGCTGCTCCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: WLEEAEDKLPSFTSHRHVQSLTG*TQAAPE Trigger: CTCAGGAGCAGCCTGGGTGCAGCCAGTCAGGGACTG...AACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTCAGCTTCTTCCAACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR CCA 90 bp | CAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTGGGAGCAAACAGCAATGGACCCGGGCTaGGGCTGGGTTCAGTCATGG | + |
|
Preference number: 2 (lower is better) Translates to: QRENRIEMSHHQQIWEQTAMDPG*GWVQSW Trigger: CCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGC...TGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR CCA 90 bp | GCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCAGTAACTTCATCTCCTGGAGCACTGACACATaGGGAGACCTGGACAACAAG | + |
|
Preference number: 2 (lower is better) Translates to: AGDTELNPSTLSLSNFISWSTDT*GDLDNK Trigger: CTTGTTGTCCAGGTCTCCCCATGTGTCAGTGCTCCA...GGAGATGAAGTTACTGAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR CCA 90 bp | TGGTTGGAAGAAGCTGAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTTTCCCCCAGGGCCTaGGACCAAAGGGAAAACAGG | + |
|
Preference number: 2 (lower is better) Translates to: WLEEAEDKLPSFTSHRHVLSPRA*DQRENR Trigger: CCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAG...AACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTCAGCTTCTTCCAACCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR TCA 90 bp | CCATTGCTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGTGGTTTCTTCAAAGCTGTGGATaGGGAGATTCCCTGTCCTCA | + |
|
Preference number: 2 (lower is better) Translates to: PLLPFPGRSGWETGKVWFLQSCG*GDSLSS Trigger: TGAGGACAGGGAATCTCCTCATCCACAGCTTTGAAG...AAACCACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR GCA 90 bp | CTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGTGGTTTTCACCTCTGCTGGTGGTGGGGAGAGATaGAGATTCAAACCCACCAGT | + |
|
Preference number: 2 (lower is better) Translates to: LSRKKRLGNRKSVVFTSAGGGER*RFKPTS Trigger: ACTGGTGGGTTTGAATCTGCATCTCTCCCCACCACC...AGCAGAGGTGAAAACCACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR CCA 90 bp | AAGAAGCTGAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTCAGTCATGGGCAGTaGATAGGCAGATGGGATCTG | + |
|
Preference number: 2 (lower is better) Translates to: KKLRINCHLSPHTAMFSPFSHGQ*IGRWDL Trigger: CAGATCCCATCTGCCTATCCACTGCCCATGACTGAA...GGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTCAGCTTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR CCA 90 bp | CCATTGCTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGTGGTTTTGTGGCTTTCAAGAGTaGGAGAGTTCCTCTGTCTGT | + |
|
Preference number: 2 (lower is better) Translates to: PLLPFPGRSGWETGKVWFCGFQE*ESSSVC Trigger: ACAGACAGAGGAACTCTCCCACTCTTGAAAGCCACA...AAACCACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR GCA 90 bp | AGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTAGATATAACCAGTCCCCAAGCATaGACTTCCTTCCTTTCCCCC | + |
|
Preference number: 2 (lower is better) Translates to: RINCHLSPHTAMFSPLDITSPQA*TSFLSP Trigger: GGGGGAAAGGAAGGAAGTGCATGCTTGGGGACTGGT...TATATCTAAGGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR TCA 90 bp | AGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTAGATATATCATCACACCAATGGTaGACATCACAGGCACTTGGC | + |
|
Preference number: 2 (lower is better) Translates to: RINCHLSPHTAMFSPLDISSHQW*TSQALG Trigger: GCCAAGTGCCTGTGATGTTCACCATTGGTGTGATGA...TATATCTAAGGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR-3UTR CCA 90 bp | AGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTAGATATAGTCCAGAACTGGAGATaGAGAAATACGGGACGAGGA | + |
|
Preference number: 2 (lower is better) Translates to: RINCHLSPHTAMFSPLDIVQNWR*RNTGRG Trigger: TCCTCGTCCCGTATTTCTCCATCTCCAGTTCTGGAC...TATATCTAAGGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 72 bp | GCGAGGAGACGGAGGATGAGGGCAATGGACCCGGGCTaGGGCTGGGTTCAGTCATGGGCAGTGGATAGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: ARRRRMRAMDPG*GWVQSWAVDRQ Trigger: CTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCGTCTCCTCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR GCA 72 bp | CTGCGATGCCATGGTAGTCTGACTCCTTCAGGGCACTaGCATGGAGTGGGCAGGCCCCCACAGCACCCTCCA | + |
|
Preference number: 3 (lower is better) Translates to: LRCHGSLTPSGH*HGVGRPPQHPP Trigger: TGGAGGGTGCTGTGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCATCGCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR CCA 72 bp | CTCCTGCCAGGGAGCCTCTCTGAGGGCTGCAGGCACTaGACGACCAGTTGTAGGCAGGCACGTGTCCTGCTA | + |
|
Preference number: 3 (lower is better) Translates to: LLPGSLSEGCRH*TTSCRQARVLL Trigger: TAGCAGGACACGTGCCTGCCTACAACTGGTCGTCCAGTGCCTGCAGCCCTCAGAGAGGCTCCCTGGCAGGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR TCA 72 bp | ATGTCTGCCCTCTGGGCCTGCGATGCCATGGTAGTCTaGCTCCTTCAGGGCACTGCCATGGAGTGGGCAGGC | + |
|
Preference number: 3 (lower is better) Translates to: MSALWACDAMVV*LLQGTAMEWAG Trigger: GCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCATCGCAGGCCCAGAGGGCAGACAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR CCA 72 bp | AGACGGAGGATGAGGGCAATGGACCCGGGCTGGGGCTaGGTTCAGTCATGGGCAGTGGATAGGCAGATGGGA | + |
|
Preference number: 3 (lower is better) Translates to: RRRMRAMDPGWG*VQSWAVDRQMG Trigger: TCCCATCTGCCTATCCACTGCCCATGACTGAACCCAGCCCCAGCCCGGGTCCATTGCCCTCATCCTCCGTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR GCA 72 bp | GGCTACCACAGAGGCGTGAACTCTGTCTCAAGATGCTaGAGATGCCTCCCTCTCCTCCTGCCAGGGAGCCTC | + |
|
Preference number: 3 (lower is better) Translates to: GYHRGVNSVSRC*RCLPLLLPGSL Trigger: GAGGCTCCCTGGCAGGAGGAGAGGGAGGCATCTGCAGCATCTTGAGACAGAGTTCACGCCTCTGTGGTAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 72 bp | CCAGGGACCCCAGCTCTTCAGGAAGGGCTGAGCCTTTaGCCTTCAAAGCTGTGGATGAGGAGATTCCCTGTC | + |
|
Preference number: 3 (lower is better) Translates to: PGTPALQEGLSL*PSKLWMRRFPV Trigger: GACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTCCCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR TCA 72 bp | GTGGTTTTCACCTCTGCTCGGGCTACCACAGAGGCGTaGACTCTGTCTCAAGATGCTGCAGATGCCTCCCTC | + |
|
Preference number: 3 (lower is better) Translates to: VVFTSARATTEA*TLSQDAADASL Trigger: GAGGGAGGCATCTGCAGCATCTTGAGACAGAGTTCACGCCTCTGTGGTAGCCCGAGCAGAGGTGAAAACCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 72 bp | TCTCTCATCACACCAATGGTGAACATCACAGGCACTTaGCTAGGGAGGATGGACCGGAGCCACCCGGAGCTA | + |
|
Preference number: 3 (lower is better) Translates to: SLITPMVNITGT*LGRMDRSHPEL Trigger: TAGCTCCGGGTGGCTCCGGTCCATCCTCCCTAGCCAAGTGCCTGTGATGTTCACCATTGGTGTGATGAGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 72 bp | CTTTTCTTGGCAACCTGCACTGTCCAGAACTGGAGATaGAGAAATACGGGACGAGGAGATCGGGAGGGCACC | + |
|
Preference number: 3 (lower is better) Translates to: LFLATCTVQNWR*RNTGRGDREGT Trigger: GGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTCTGGACAGTGCAGGTTGCCAAGAAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR GCA 72 bp | CTCTCACTTAGGAGGCTAGTCACTCCCATGAACCATTaGTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAG | + |
|
Preference number: 3 (lower is better) Translates to: LSLRRLVTPMNH*SPFQEEAAGKQ Trigger: CTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGGTTCATGGGAGTGACTAGCCTCCTAAGTGAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 72 bp | CTTCAGGAAGGGCTGAGCCTTTGGCCTTCAAAGCTGTaGATGAGGAGATTCCCTGTCCTCATGCTTGGTTGG | + |
|
Preference number: 3 (lower is better) Translates to: LQEGLSLWPSKL*MRRFPVLMLGW Trigger: CCAACCAAGCATGAGGACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CCA 72 bp | CTTTCAGACCTGAGAAAAAGACCAAGATGTCCAGTCTaGGCAGGAGACACTGAACTGAACCCATCTACCCTC | + |
|
Preference number: 3 (lower is better) Translates to: LSDLRKRPRCPV*AGDTELNPSTL Trigger: GAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGCCCAGACTGGACATCTTGGTCTTTTTCTCAGGTCTGAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR CCA 72 bp | GAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTaGGAGCAAACACAGCCTATGGAGGTTAAAGAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: ENRIEMSHHQQI*EQTQPMEVKEA Trigger: AGCCTCTTTAACCTCCATAGGCTGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CCA 90 bp | GCGCAGGGCAGAGTACACCATCACCCGACTGTCCTCCTGCCGGCGGCCTGCAGACACGAAAGGCTGCGCTaGATACTTCGGAGGGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: AQGRVHHHPTVLLPAACRHERLR*ILRREP Trigger: AGGCTCCCTCCGAAGTATCCAGCGCAGCCTTTCGTG...TCTGCAGGCCGCCGGCAGGAGGACAGTCGGGTGATGGTGTACTCTGCCCTGCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS-3UTR TCA 90 bp | GAACTGGAGATGGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCCCCGATGTCAGAAGGTaGCTCCCAACTACCAGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: ELEMEKYGTRRSGGHPRPPDVRR*LPTTRP Trigger: GGGCCTGGTAGTTGGGAGTCACCTTCTGACATCGGG...GGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTC 62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR TCA 90 bp | GAACTGGAGATGGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCCTGGAGCCGTGCATCTaGTCGGTCTGTCACATGGAC | + |
|
Preference number: 4 (lower is better) Translates to: ELEMEKYGTRRSGGHPRPLEPCI*SVCHMD Trigger: GTCCATGTGACAGACCGATCAGATGCACGGCTCCAG...GGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR TCA 90 bp | GAACTGGAGATGGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCGCCCCATGGAAACGGTaGCTGCATAGATGGGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: ELEMEKYGTRRSGGHPRPAPWKR*LHRWAA Trigger: TGCTGCCCATCTATGCAGTCACCGTTTCCATGGGGC...GGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CCA 90 bp | TGCCATGGTAGTCTGACTCCTTCAGGGCACTGCCATGGAGTGGGCAGGCCCCCAGAAAAGGGAGAAGGCTaGGCCGAACGCGACGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: CHGSLTPSGHCHGVGRPPEKGEG*AERDEG Trigger: ACCTTCGTCGCGTTCGGCCCAGCCTTCTCCCTTTTC...TGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR GCA 90 bp | GGGCAGGGTGAGGGTGGAGCACTGACACATGGGGAGACCTGGACAACAAGGGGGCATGGAAACGGTGACTaGATAGATGGGCAGCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: GQGEGGALTHGETWTTRGHGNGD*IDGQQA Trigger: AGCCTGCTGCCCATCTATGCAGTCACCGTTTCCATG...CCCCCTTGTTGTCCAGGTCTCCCCATGTGTCAGTGCTCCACCCTCACCCTGCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS-3UTR GCA 90 bp | TGCCATGGTAGTCTGACTCCTTCAGGGCACTGCCATGGAGTGGGCAGGCCCCCACGAACGCGACGAAGGTaGATCCGAAAAACACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: CHGSLTPSGHCHGVGRPPRTRRR*IRKTQQ Trigger: CTGCTGTGTTTTTCGGATGCACCTTCGTCGCGTTCG...TGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CCA 90 bp | TGCCATGGTAGTCTGACTCCTTCAGGGCACTGCCATGGAGTGGGCAGGCCCCCATCTGTCGGATGGAGATaGGTGATCTTCCGTCCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: CHGSLTPSGHCHGVGRPPSVGWR*VIFRPH Trigger: GTGAGGACGGAAGATCACCCATCTCCATCCGACAGA...TGGGGGCCTGCCCACTCCATGGCAGTGCCCTGAAGGAGTCAGACTACCATGGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR GCA 90 bp | CCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCAAGTCCTCGGGTGGGATaGGCAGGGCAGAGTACACCA | + |
|
Preference number: 4 (lower is better) Translates to: PFPQGLGPKGKQDRNEPPSPRVG*AGQSTP Trigger: TGGTGTACTCTGCCCTGCGCATCCCACCCGAGGACT...TGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056710.10 |
||
| CDS-3UTR CCA 90 bp | GAACTGGAGATGGAGAAATACGGGACGAGGAGATCGGGAGGGCACCCCAGGCCCGATCGGTCTGTCACATaGACCAAGATGAACCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: ELEMEKYGTRRSGGHPRPDRSVT*TKMNQT Trigger: GGTCTGGTTCATCTTGGTCCATGTGACAGACCGATC...GGGCCTGGGGTGCCCTCCCGATCTCCTCGTCCCGTATTTCTCCATCTCCAGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR TCA 90 bp | CCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGCTGGAGCCGTGCATCTaGTCGGTCTGTCACATGGAC | + |
|
Preference number: 4 (lower is better) Translates to: PRAWDQRENRIEMSHHQQLEPCI*SVCHMD Trigger: GTCCATGTGACAGACCGATCAGATGCACGGCTCCAG...CTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR TCA 90 bp | TTCCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCCCGATGTCAGAAGGTaGCTCCCAACTACCAGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: FLSPRAWDQRENRIEMSHPDVRR*LPTTRP Trigger: GGGCCTGGTAGTTGGGAGTCACCTTCTGACATCGGG...GTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR TCA 90 bp | CCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGGCCCCATGGAAACGGTaGCTGCATAGATGGGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PRAWDQRENRIEMSHHQQAPWKR*LHRWAA Trigger: TGCTGCCCATCTATGCAGTCACCGTTTCCATGGGGC...CTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| 3UTR CAA 72 bp | TTCTCTCATCACACCAATGGTGAACATCACAGGCACTaGGCTAGGGAGGATGGACCGGAGCCACCCGGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: FSHHTNGEHHRH*AREDGPEPPGA Trigger: AGCTCCGGGTGGCTCCGGTCCATCCTCCCTAGCCAAGTGCCTGTGATGTTCACCATTGGTGTGATGAGAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| 3UTR CAA 72 bp | ACCAGGGACCCCAGCTCTTCAGGAAGGGCTGAGCCTTaGGCCTTCAAAGCTGTGGATGAGGAGATTCCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TRDPSSSGRAEP*AFKAVDEEIPC Trigger: ACAGGGAATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCTGGGGTCCCTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS-3UTR TCA 90 bp | CCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCGGATGGAGATGGGTaGTCTTCCGTCCTCACTCAG | + |
|
Preference number: 4 (lower is better) Translates to: PFPQGLGPKGKQDRNEPPSDGDG*SSVLTQ Trigger: CTGAGTGAGGACGGAAGATCACCCATCTCCATCCGA...TGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CCA 90 bp | CCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCAGATCCCAACCACACCTaGCCCAAGTGCATCAGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: PFPQGLGPKGKQDRNEPPDPNHT*PKCISQ Trigger: TTGGCTGATGCACTTGGGCCAGGTGTGGTTGGGATC...TGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR GCA 90 bp | CCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCACGAACGCGACGAAGGTaGATCCGAAAAACACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: PFPQGLGPKGKQDRNEPPRTRRR*IRKTQQ Trigger: CTGCTGTGTTTTTCGGATGCACCTTCGTCGCGTTCG...TGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CCA 90 bp | CCATTGCTCCCCTTTCCAGGAAGAAGCGGCTGGGAAACAGGAAAAGTGTGGTTTGAAAAGGGAGAAGGCTaGGCCGAACGCGACGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: PLLPFPGRSGWETGKVWFEKGEG*AERDEG Trigger: ACCTTCGTCGCGTTCGGCCCAGCCTTCTCCCTTTTC...AAACCACACTTTTCCTGTTTCCCAGCCGCTTCTTCCTGGAAAGGGGAGCAATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS-3UTR CCA 90 bp | AGATGTCCAGTCTGGGCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCTCTGTCGGATGGAGATaGGTGATCTTCCGTCCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: RCPVWAGDTELNPSTLSLSVGWR*VIFRPH Trigger: GTGAGGACGGAAGATCACCCATCTCCATCCGACAGA...GAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGCCCAGACTGGACATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR TCA 90 bp | AGATGTCCAGTCTGGGCAGGAGACACTGAACTGAACCCATCTACCCTCAGCCTCTCACATGGACCAAGATaGACCAGACCACAGAAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RCPVWAGDTELNPSTLSLSHGPR*TRPQKP Trigger: TGGCTTCTGTGGTCTGGTTCATCTTGGTCCATGTGA...GAGGCTGAGGGTAGATGGGTTCAGTTCAGTGTCTCCTGCCCAGACTGGACATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CCA 90 bp | AGCTCTTCAGGAAGGGCTGAGCCTTTGGCCTTCAAAGCTGTGGATGAGGAGATTATCAGGAGGCCATACTaGAGCCGTGCATCTGATCGG | + |
|
Preference number: 4 (lower is better) Translates to: SSSGRAEPLAFKAVDEEIIRRPY*SRASDR Trigger: CCGATCAGATGCACGGCTCCAGTATGGCCTCCTGAT...AATCTCCTCATCCACAGCTTTGAAGGCCAAAGGCTCAGCCCTTCCTGAAGAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS-3UTR CCA 90 bp | TTCCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACAGGCCATCTGTCGGATaGAGATGGGTGATCTTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: FLSPRAWDQRENRIEMSHRPSVG*RWVIFR Trigger: ACGGAAGATCACCCATCTCCATCCGACAGATGGCCT...GTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR GCA 90 bp | AAGAAGCTGAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCCCTTACACGAAAGGCTaGGCTGGATACTTCGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: KKLRINCHLSPHTAMFSPPYTKG*AGYFGG Trigger: CCCTCCGAAGTATCCAGCGCAGCCTTTCGTGTAAGG...GGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTCAGCTTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS-3UTR CCA 90 bp | CCCAGGCTGCTCCTGAGAAAGCTTAGAGACTACAGGTCACAAATGGACAACGCCACTCCCCAAAAGGTGTaGAGCAGGATAATGGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: PRLLLRKLRDYRSQMDNATPQKV*SRIMAA Trigger: AGCAGCCATTATCCTGCTCCACACCTTTTGGGGAGT...GGCGTTGTCCATTTGTGACCTGTAGTCTCTAAGCTTTCTCAGGAGCAGCCTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS-3UTR CCA 90 bp | TTCCTTTCCCCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACACTCCCCAAAAGGTGTaGAGCAGGATAATGGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: FLSPRAWDQRENRIEMSHTPQKV*SRIMAA Trigger: AGCAGCCATTATCCTGCTCCACACCTTTTGGGGAGT...GTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGGGGAAAGGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR GCA 90 bp | CATTTCACCTTGGGGAAAGGAGGGGTGCTGACGGCCATGGACGTTAGGATAGAGCACACCTGGCCCAAGTaGATCAGCCAAAATATTGAT | + |
|
Preference number: 4 (lower is better) Translates to: HFTLGKGGVLTAMDVRIEHTWPK*ISQNID Trigger: ATCAATATTTTGGCTGATGCACTTGGGCCAGGTGTG...CTCTATCCTAACGTCCATGGCCGTCAGCACCCCTCCTTTCCCCAAGGTGAAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR GCA 90 bp | CCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGCACACCTGGCCCAAGTaGATCAGCCAAAATATTGAT | + |
|
Preference number: 4 (lower is better) Translates to: PRAWDQRENRIEMSHHQQHTWPK*ISQNID Trigger: ATCAATATTTTGGCTGATGCACTTGGGCCAGGTGTG...CTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CCA 90 bp | AGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTGGGAGCAAACACAGCACGAAAGGCTGCGCTaGATACTTCGGAGGGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: RENRIEMSHHQQIWEQTQHERLR*ILRREP Trigger: AGGCTCCCTCCGAAGTATCCAGCGCAGCCTTTCGTG...CTGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR TCA 90 bp | CTCCTGAGAAAGCTTAGAGACTACAGGTCACAAATGGACAACGCCAAACCCGGATCACATGGACCAAGATaGACCAGACCACAGAAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: LLRKLRDYRSQMDNAKPGSHGPR*TRPQKP Trigger: TGGCTTCTGTGGTCTGGTTCATCTTGGTCCATGTGA...TCCGGGTTTGGCGTTGTCCATTTGTGACCTGTAGTCTCTAAGCTTTCTCAGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS-3UTR CCA 90 bp | AAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTGGGAGCAAACACAGATCCCAACCACACCTaGCCCAAGTGCATCAGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: KGKQDRNEPPSADLGANTDPNHT*PKCISQ Trigger: TTGGCTGATGCACTTGGGCCAGGTGTGGTTGGGATC...TGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CCA 90 bp | GAGGATAAACTGCCATCTTTCACCTCACACCGCCATGTTCTCTCCCTTAGATATGATCGGTCTGTCACATaGACCAAGATGAACCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: EDKLPSFTSHRHVLSLRYDRSVT*TKMNQT Trigger: GGTCTGGTTCATCTTGGTCCATGTGACAGACCGATC...ATATCTAAGGGAGAGAACATGGCGGTGTGAGGTGAAAGATGGCAGTTTATCCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS-3UTR CCA 90 bp | AAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGATTTGGGAGCAAACACAAGGCCATCTGTCGGATaGAGATGGGTGATCTTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: KGKQDRNEPPSADLGANTRPSVG*RWVIFR Trigger: ACGGAAGATCACCCATCTCCATCCGACAGATGGCCT...TGTGTTTGCTCCCAAATCTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS GCA 90 bp | GCCTCCGGCTGTGATGAACGCCCAGAGCCCCATGGAAACGGTGACTaGATAGATGGGCAGCAGGCTAGCCTCATACCAGGGGTTCAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: ASGCDERPEPHGNGD*IDGQQASLIPGVQE Trigger: TTCCTGAACCCCTGGTATGAGGCTAGCCTGCTGCCCATCTATGCAGTCACCGTTTCCATGGGGCTCTGGGCGTTCATCACAGCCGGAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS CCA 90 bp | CCGAAGTGGGTCTCCAGCTACAGTGATCAGGAAAAGGGAGAAGGCTaGGCCGAACGCGACGAAGGTGCATCCGAAAAACACAGCAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: PKWVSSYSDQEKGEG*AERDEGASEKHSSP Trigger: GGGGCTGCTGTGTTTTTCGGATGCACCTTCGTCGCGTTCGGCCCAGCCTTCTCCCTTTTCCTGATCACTGTAGCTGGAGACCCACTTCGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 ENSMUST00000197081.2 |
||
| CDS CCA 90 bp | GACCAGCCAGAAAAAGGCTCCCGCCACCAGGATGATAACCCGAAGTaGGTCTCCAGCTACAGTGATCAGGAAAAGGGAGAAGGCTGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: DQPEKGSRHQDDNPK*VSSYSDQEKGEGWA Trigger: GGCCCAGCCTTCTCCCTTTTCCTGATCACTGTAGCTGGAGACCCACTTCGGGTTATCATCCTGGTGGCGGGAGCCTTTTTCTGGCTGGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS TCA 90 bp | GACAGCAGCACCAAAAATCAGGAGGCCATACTGGAGCCGTGCATCTaGTCGGTCTGTCACATGGACCAAGATGAACCAGACCACAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: DSSTKNQEAILEPCI*SVCHMDQDEPDHRS Trigger: GCTTCTGTGGTCTGGTTCATCTTGGTCCATGTGACAGACCGATCAGATGCACGGCTCCAGTATGGCCTCCTGATTTTTGGTGCTGCTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS CCA 90 bp | CGTCTCCTCTCACAGGCATCAAAGAACACAACTCCCCAAAAGGTGTaGAGCAGGATAATGGCTGCTGTCAGAAAGGCTGAAGTCAGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: RLLSQASKNTTPQKV*SRIMAAVRKAEVRK Trigger: CTTCCTGACTTCAGCCTTTCTGACAGCAGCCATTATCCTGCTCCACACCTTTTGGGGAGTTGTGTTCTTTGATGCCTGTGAGAGGAGACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CAA 90 bp | CCCAGGGCCTGGGACCAAAGGGAAAACAGGATAGAAATGAGCCACCATCAGCAGGCATCAGCCAAAATATaGATAACAGAGAAGACACCA | + |
|
Preference number: 5 (lower is better) Translates to: PRAWDQRENRIEMSHHQQASAKI*ITEKTP Trigger: TGGTGTCTTCTCTGTTATCAATATTTTGGCTGATGC...CTGCTGATGGTGGCTCATTTCTATCCTGTTTTCCCTTTGGTCCCAGGCCCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS-3UTR CAA 90 bp | CTCCTGAGAAAGCTTAGAGACTACAGGTCACAAATGGACAACGCCAAACCCGGAGCATCAGCCAAAATATaGATAACAGAGAAGACACCA | + |
|
Preference number: 5 (lower is better) Translates to: LLRKLRDYRSQMDNAKPGASAKI*ITEKTP Trigger: TGGTGTCTTCTCTGTTATCAATATTTTGGCTGATGC...TCCGGGTTTGGCGTTGTCCATTTGTGACCTGTAGTCTCTAAGCTTTCTCAGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015894.12 |
||
| CDS GCA 72 bp | CGCAGGGCAGAGTACACCATCACCCGACTGTCCTCCTaGCGGCGGCACGAAAGGCTGCGCTGGATACTTCGG | + |
|
Preference number: 6 (lower is better) Translates to: RRAEYTITRLSS*RRHERLRWILR Trigger: CCGAAGTATCCAGCGCAGCCTTTCGTGCCGCCGGCAGGAGGACAGTCGGGTGATGGTGTACTCTGCCCTGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056710.10 |
||
| CDS CCA 72 bp | CGACTGTCCTCCTGCCGGCGGCACGAAAGGCTGCGCTaGATACTTCGGAGGGAGCCTCCGGCTGTGATGAAC | + |
|
Preference number: 6 (lower is better) Translates to: RLSSCRRHERLR*ILRREPPAVMN Trigger: GTTCATCACAGCCGGAGGCTCCCTCCGAAGTATCCAGCGCAGCCTTTCGTGCCGCCGGCAGGAGGACAGTCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056710.10 |
||
| CDS GCA 72 bp | TGTGATGAACGCCCAGAGCCCCATGGAAACGGTGACTaGATAGATGGGCAGCAGGCTAGCCTCATACCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: CDERPEPHGNGD*IDGQQASLIPG Trigger: CCCTGGTATGAGGCTAGCCTGCTGCCCATCTATGCAGTCACCGTTTCCATGGGGCTCTGGGCGTTCATCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS TCA 72 bp | CAGGGGTTCAGGAATGTCAGTCCCGATGTCAGAAGGTaGCTCCCAACTACCAGGCCCAAAGCCCAGTACCGT | + |
|
Preference number: 6 (lower is better) Translates to: QGFRNVSPDVRR*LPTTRPKAQYR Trigger: ACGGTACTGGGCTTTGGGCCTGGTAGTTGGGAGTCACCTTCTGACATCGGGACTGACATTCCTGAACCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS CCA 72 bp | GTCTCCAGCTACAGTGATCAGGAAAAGGGAGAAGGCTaGGCCGAACGCGACGAAGGTGCATCCGAAAAACAC | + |
|
Preference number: 6 (lower is better) Translates to: VSSYSDQEKGEG*AERDEGASEKH Trigger: GTGTTTTTCGGATGCACCTTCGTCGCGTTCGGCCCAGCCTTCTCCCTTTTCCTGATCACTGTAGCTGGAGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 ENSMUST00000197081.2 |
||
| CDS CCA 72 bp | CCATACTGGAGCCGTGCATCTGATCGGTCTGTCACATaGACCAAGATGAACCAGACCACAGAAGCCAAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: PYWSRASDRSVT*TKMNQTTEAKS Trigger: GCTCTTGGCTTCTGTGGTCTGGTTCATCTTGGTCCATGTGACAGACCGATCAGATGCACGGCTCCAGTATGG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS CCA 72 bp | ACAGAGACAGCAGCACCAAAAATCAGGAGGCCATACTaGAGCCGTGCATCTGATCGGTCTGTCACATGGACC | + |
|
Preference number: 6 (lower is better) Translates to: TETAAPKIRRPY*SRASDRSVTWT Trigger: GGTCCATGTGACAGACCGATCAGATGCACGGCTCCAGTATGGCCTCCTGATTTTTGGTGCTGCTGTCTCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS CCA 72 bp | GGAACACTTCCCCGCCACCAGGATGATAACCCGAAGTaGGTCTCCAGCTACAGTGATCAGGAAAAGGGAGAA | + |
|
Preference number: 6 (lower is better) Translates to: GTLPRHQDDNPK*VSSYSDQEKGE Trigger: TTCTCCCTTTTCCTGATCACTGTAGCTGGAGACCCACTTCGGGTTATCATCCTGGTGGCGGGGAAGTGTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197081.2 |
||
| CDS CCA 72 bp | GAAAAAGGCTCCCGCCACCAGGATGATAACCCGAAGTaGGTCTCCAGCTACAGTGATCAGGAAAAGGGAGAA | + |
|
Preference number: 6 (lower is better) Translates to: EKGSRHQDDNPK*VSSYSDQEKGE Trigger: TTCTCCCTTTTCCTGATCACTGTAGCTGGAGACCCACTTCGGGTTATCATCCTGGTGGCGGGAGCCTTTTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS CCA 72 bp | CGAAGGACAGACCAGAAACATAGGCCATCTGTCGGATaGAGATGGGTGATCTTCCGTCCTCACTCAGTGATG | + |
|
Preference number: 6 (lower is better) Translates to: RRTDQKHRPSVG*RWVIFRPHSVM Trigger: CATCACTGAGTGAGGACGGAAGATCACCCATCTCCATCCGACAGATGGCCTATGTTTCTGGTCTGTCCTTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||
| CDS CCA 72 bp | TCACAGGCATCAAAGAACACAACTCCCCAAAAGGTGTaGAGCAGGATAATGGCTGCTGTCAGAAAGGCTGAA | + |
|
Preference number: 6 (lower is better) Translates to: SQASKNTTPQKV*SRIMAAVRKAE Trigger: TTCAGCCTTTCTGACAGCAGCCATTATCCTGCTCCACACCTTTTGGGGAGTTGTGTTCTTTGATGCCTGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015894.12 ENSMUST00000056710.10 |
||