Pregenerated sensors for APEX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035960Ensembl transcript IDs: ENSMUST00000049411.12, ENSMUST00000128395.2, ENSMUST00000136753.8, ENSMUST00000154288.3
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTaGAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGGT | + |
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Preference number: 1 (lower is better) Translates to: STYKTKHLKAKTPDF*RESHLPGRKLLQEG Trigger: ACCCTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | CCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGGTCACTGCCAAGAGCCTTaGACCGGATCTTGCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: PDFCRESHLPGRKLLQEGHCQEP*TGSCCH Trigger: GTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTG...ACCCTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGACCAGTACTGATGGGTaGGTCCAGGCAGCTCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: TPDFCRESHLPGRKLLQETSTDG*VQAALA Trigger: TGCAAGAGCTGCCTGGACTCACCCATCAGTACTGGT...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGAGTCCAGGCAGCTCTTaGAGTTCAGCCGGGAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: TPDFCRESHLPGRKLLQESPGSS*SSAGSL Trigger: CAAACTCCCGGCTGAACTGCAAGAGCTGCCTGGACT...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | CACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGAAACCTTGGCGCTCCTaGGGAGTAAAGCCAGCATTC | + |
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Preference number: 4 (lower is better) Translates to: HQTSAERAISQAGSYCRRKPWRS*GVKPAF Trigger: GAATGCTGGCTTTACTCCCCAGGAGCGCCAAGGTTT...CCTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | CACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGAGATTTGCCACTGGGTaGGGTTTTCTGATCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: HQTSAERAISQAGSYCRRRFATG*GFLIWR Trigger: CCTCCAGATCAGAAAACCTCACCCAGTGGCAAATCT...CCTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGACCCCTGCCTGCATTaGGAACATAGGCTGTTACCA | + |
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Preference number: 4 (lower is better) Translates to: TPDFCRESHLPGRKLLQEDPCLH*EHRLLP Trigger: TGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTC...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049411.12 |
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| CDS-3UTR TCA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGTCCAGGAGCATATCTTaGGTGTGGCAGATTTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TPDFCRESHLPGRKLLQESRSIS*VWQICH Trigger: GTGGCAAATCTGCCACACTCAAGATATGCTCCTGGA...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | CCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGGTTGGCAGATTTGCCACTaGGTGAGGTTTTCTGATCTG | + |
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Preference number: 4 (lower is better) Translates to: PDFCRESHLPGRKLLQEGWQICH*VRFSDL Trigger: CAGATCAGAAAACCTCACCCAGTGGCAAATCTGCCA...ACCCTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | AAAACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGATCACCCGGCCTTCTTaGTCATGTTCTTCCTCGCCA | + |
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Preference number: 4 (lower is better) Translates to: KTPDFCRESHLPGRKLLQITRPS*SCSSSP Trigger: TGGCGAGGAAGAACATGATCAAGAAGGCCGGGTGAT...CTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049411.12 |
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| CDS-3UTR TCA 90 bp | CACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGAGGTCAATTTCTTCATaGGCCACATTGAGATCCCCA | + |
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Preference number: 4 (lower is better) Translates to: HQTSAERAISQAGSYCRRRSISS*ATLRSP Trigger: TGGGGATCTCAATGTGGCTCATGAAGAAATTGACCT...CCTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | AAAACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGTCTTACCAGACCCCTaGCTGCATTGGGAACATAGG | + |
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Preference number: 4 (lower is better) Translates to: KTPDFCRESHLPGRKLLQVLPDP*LHWEHR Trigger: CCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGAC...CTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGTGGCAGATTTGCCACTaGGTGAGGTTTTCTGATCTG | + |
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Preference number: 4 (lower is better) Translates to: TPDFCRESHLPGRKLLQEWQICH*VRFSDL Trigger: CAGATCAGAAAACCTCACCCAGTGGCAAATCTGCCA...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGCTTCTCGGTTTTCTTTaGTGCCCCCTTACTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TPDFCRESHLPGRKLLQELLGFL*CPLTLL Trigger: AAGAAGAGTAAGGGGGCAGCAAAGAAAACCGAGAAG...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | AAAACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGCCTTGGACCGGATCTTaGTGTCACACAATGCAGGTA | + |
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Preference number: 4 (lower is better) Translates to: KTPDFCRESHLPGRKLLQPWTGS*CHTMQV Trigger: TACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGG...CTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGCACAAGAGGCTTTCTaGAAGCCAAGTCCTTTAGAA | + |
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Preference number: 4 (lower is better) Translates to: TPDFCRESHLPGRKLLQEAQEAF*KPSPLE Trigger: TTCTAAAGGACTTGGCTTCCAGAAAGCCTCTTGTGC...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | AGCACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGGGAGCTGACCAGTACTaGTGGGTGAGTCCAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: STYKTKHLKAKTPDFCREGADQY*WVSPGS Trigger: GCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCC...CTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | GGGAGCACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAACCAGTACTGATGGGTaGGTCCAGGCAGCTCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: GSTYKTKHLKAKTPDFCRTSTDG*VQAALA Trigger: TGCAAGAGCTGCCTGGACTCACCCATCAGTACTGGT...TCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | AAGGCTAAAACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTCGGTTTTCTTTGCTaGCCCCTTACTCTTCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: KAKTPDFCRESHLPGRKLLGFLC*PLTLLG Trigger: ACCAAGAAGAGTAAGGGGGCAGCAAAGAAAACCGAG...TAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | CCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGGTTCTTTTTGTTTCCTTTaGGGTTACGGAGGTCAATTT | + |
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Preference number: 4 (lower is better) Translates to: PDFCRESHLPGRKLLQEGSFCFL*GYGGQF Trigger: AAATTGACCTCCGTAACCCCAAAGGAAACAAAAAGA...ACCCTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | AGCACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGCTGGGTGAGGTTTTCTaGTCTGGAGGGTCCTCGTAC | + |
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Preference number: 4 (lower is better) Translates to: STYKTKHLKAKTPDFCRELGEVF*SGGSSY Trigger: GTACGAGGACCCTCCAGATCAGAAAACCTCACCCAG...CTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | ACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGAGCCTGGGTGAGGTTTTCTaGTCTGGAGGGTCCTCGTAC | + |
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Preference number: 4 (lower is better) Translates to: TYKTKHLKAKTPDFCRESLGEVF*SGGSSY Trigger: GTACGAGGACCCTCCAGATCAGAAAACCTCACCCAG...GCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | ACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGAGCCCCCCTTACTCTTCTTaGTCTCTGGCTCCGACTTGG | + |
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Preference number: 4 (lower is better) Translates to: TYKTKHLKAKTPDFCRESPPYSS*SLAPTW Trigger: CCAAGTCGGAGCCAGAGACCAAGAAGAGTAAGGGGG...GCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGT 49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | AGCACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGAGGGTGATGGGACAGTaGTCACTGCCAAGAGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: STYKTKHLKAKTPDFCRERVMGQ*SLPRAL Trigger: CAAGGCTCTTGGCAGTGACCACTGTCCCATCACCCT...CTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | GGGAGCACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAAGATTTGCCACTGGGTaGGGTTTTCTGATCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GSTYKTKHLKAKTPDFCRRFATG*GFLIWR Trigger: CCTCCAGATCAGAAAACCTCACCCAGTGGCAAATCT...TCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | AAAGTAGGGCCTTTTATTTCTCTTGGATTGTCTAAAGGAAACCAGAAGTTTGGTGGAGCTGACCAGTACTaGTGGGTGAGTCCAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KVGPFISLGLSKGNQKFGGADQY*WVSPGS Trigger: GCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCC...ACCAAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | ACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGAGCCCTTGGACCGGATCTTaGTGTCACACAATGCAGGTA | + |
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Preference number: 4 (lower is better) Translates to: TYKTKHLKAKTPDFCRESPWTGS*CHTMQV Trigger: TACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGG...GCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | AGCACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGCTCGGTTTTCTTTGCTaGCCCCTTACTCTTCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: STYKTKHLKAKTPDFCRELGFLC*PLTLLG Trigger: ACCAAGAAGAGTAAGGGGGCAGCAAAGAAAACCGAG...CTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | ACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGAGCCTTCTCGGTTTTCTTTaGTGCCCCCTTACTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TYKTKHLKAKTPDFCRESLLGFL*CPLTLL Trigger: AAGAAGAGTAAGGGGGCAGCAAAGAAAACCGAGAAG...GCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | TTTGGTTTAATGTTTAAAATGAGGGAGCACATACAAAACCAAACACCTGAAGGCCACTGCCAAGAGCCTTaGACCGGATCTTGCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: FGLMFKMREHIQNQTPEGHCQEP*TGSCCH Trigger: GTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTG...GCCTTCAGGTGTTTGGTTTTGTATGTGCTCCCTCATTTTAAACATTAAACCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | TTTGGTTTAATGTTTAAAATGAGGGAGCACATACAAAACCAAACACCTGAAGGCGTCTTACCAGACCCCTaGCTGCATTGGGAACATAGG | + |
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Preference number: 4 (lower is better) Translates to: FGLMFKMREHIQNQTPEGVLPDP*LHWEHR Trigger: CCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGAC...GCCTTCAGGTGTTTGGTTTTGTATGTGCTCCCTCATTTTAAACATTAAACCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR GCA 90 bp | ACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGAGCTGGGAACATAGGCAATaGCATAAGAGACTTTTAGCG | + |
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Preference number: 4 (lower is better) Translates to: TYKTKHLKAKTPDFCRESWEHRQ*HKRLLA Trigger: CGCTAAAAGTCTCTTATGGCATTGCCTATGTTCCCA...GCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000128395.2 |
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| CDS-3UTR CCA 90 bp | AAAGTAGGGCCTTTTATTTCTCTTGGATTGTCTAAAGGAAACCAGAAGTTTGGTAAACCTTGGCGCTCCTaGGGAGTAAAGCCAGCATTC | + |
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Preference number: 4 (lower is better) Translates to: KVGPFISLGLSKGNQKFGKPWRS*GVKPAF Trigger: GAATGCTGGCTTTACTCCCCAGGAGCGCCAAGGTTT...ACCAAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR TCA 90 bp | TTTGGTTTAATGTTTAAAATGAGGGAGCACATACAAAACCAAACACCTGAAGGCAGGTCAATTTCTTCATaGGCCACATTGAGATCCCCA | + |
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Preference number: 4 (lower is better) Translates to: FGLMFKMREHIQNQTPEGRSISS*ATLRSP Trigger: TGGGGATCTCAATGTGGCTCATGAAGAAATTGACCT...GCCTTCAGGTGTTTGGTTTTGTATGTGCTCCCTCATTTTAAACATTAAACCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS GCA 90 bp | CAGGACAGGGCCCTCTCCCGCGGCCTCCTTCTCGGTTTTCTTTGCTaGCCCCTTACTCTTCTTGGTCTCTGGCTCCGACTTGGGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: QDRALSRGLLLGFLC*PLTLLGLWLRLGFF Trigger: GAAGAACCCAAGTCGGAGCCAGAGACCAAGAAGAGTAAGGGGGCAGCAAAGAAAACCGAGAAGGAGGCCGCGGGAGAGGGCCCTGTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
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| CDS TCA 90 bp | GAGCATATCTTGAGTGTGGCAGATTTGCCACTGGGTGAGGTTTTCTaGTCTGGAGGGTCCTCGTACAGGACAGGGCCCTCTCCCGCGGCC | + |
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Preference number: 5 (lower is better) Translates to: EHILSVADLPLGEVF*SGGSSYRTGPSPAA Trigger: GGCCGCGGGAGAGGGCCCTGTCCTGTACGAGGACCCTCCAGATCAGAAAACCTCACCCAGTGGCAAATCTGCCACACTCAAGATATGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
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| CDS-3UTR CAA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGCCCCCTTACTCTTCTaGGTCTCTGGCTCCGACTTG | + |
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Preference number: 5 (lower is better) Translates to: TPDFCRESHLPGRKLLQEAPLLF*VSGSDL Trigger: CAAGTCGGAGCCAGAGACCAAGAAGAGTAAGGGGGC...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CAA 90 bp | CCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGGGTAGTTCAGCCGGGAGTTaGTTCTCCGAGCACTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: PDFCRESHLPGRKLLQEGSSAGS*FSEHLV Trigger: GACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACT...ACCCTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS TCA 90 bp | CCCACACCACTGTATCCTTCTTTGTCTGACGGAGCTGACCAGTACTaGTGGGTGAGTCCAGGCAGCTCTTGCAGTTCAGCCGGGAGTTTG | + |
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Preference number: 5 (lower is better) Translates to: PTPLYPSLSDGADQY*WVSPGSSCSSAGSL Trigger: CAAACTCCCGGCTGAACTGCAAGAGCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCCGTCAGACAAAGAAGGATACAGTGGTGTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
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| CDS-3UTR CAA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGCCACTGTATCCTTCTTaGTCTGACGGAGCTGACCAG | + |
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Preference number: 5 (lower is better) Translates to: TPDFCRESHLPGRKLLQEPLYPS*SDGADQ Trigger: CTGGTCAGCTCCGTCAGACAAAGAAGGATACAGTGG...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS-3UTR CAA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGAATCACCCGGCCTTCTaGATCATGTTCTTCCTCGCC | + |
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Preference number: 5 (lower is better) Translates to: TPDFCRESHLPGRKLLQENHPAF*IMFFLA Trigger: GGCGAGGAAGAACATGATCAAGAAGGCCGGGTGATT...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049411.12 |
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| CDS TCA 90 bp | CACATTCCAGGAGCATATCTTGAGTGTGGCAGATTTGCCACTGGGTaGGGTTTTCTGATCTGGAGGGTCCTCGTACAGGACAGGGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: HIPGAYLECGRFATG*GFLIWRVLVQDRAL Trigger: GAGGGCCCTGTCCTGTACGAGGACCCTCCAGATCAGAAAACCTCACCCAGTGGCAAATCTGCCACACTCAAGATATGCTCCTGGAATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
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| CDS TCA 90 bp | CACTGTATCCTTCTTTGTCTGACGGAGCTGACCAGTACTGATGGGTaGGTCCAGGCAGCTCTTGCAGTTCAGCCGGGAGTTTGTTCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: HCILLCLTELTSTDG*VQAALAVQPGVCSP Trigger: CGGAGAACAAACTCCCGGCTGAACTGCAAGAGCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCCGTCAGACAAAGAAGGATACAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
||
| CDS CCA 90 bp | CCCAACGCTGTCGGTATTCCAGTCTTACCAGACCCCTGCCTGCATTaGGAACATAGGCAATGCCATAAGAGACTTTTAGCGGGCACTGGC | + |
|
Preference number: 5 (lower is better) Translates to: PNAVGIPVLPDPCLH*EHRQCHKRLLAGTG Trigger: GCCAGTGCCCGCTAAAAGTCTCTTATGGCATTGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | AAAACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGTCACTGCCAAGAGCCTaGGACCGGATCTTGCTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: KTPDFCRESHLPGRKLLQSLPRA*DRILLS Trigger: TGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGA...CTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS GCA 90 bp | ATTCCAGTCTTACCAGACCCCTGCCTGCATTGGGAACATAGGCAATaGCATAAGAGACTTTTAGCGGGCACTGGCGGGAAAGTAGGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: IPVLPDPCLHWEHRQ*HKRLLAGTGGKVGP Trigger: TGGGCCTACTTTCCCGCCAGTGCCCGCTAAAAGTCTCTTATGGCATTGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128395.2 |
||
| CDS CCA 90 bp | CAGGCAGCTCTTGCAGTTCAGCCGGGAGTTTGTTCTCCGAGCACTTaGTCTCTTGGAGGCACAAGATATCTGGTGCTTCTTCCTTTACCC | + |
|
Preference number: 5 (lower is better) Translates to: QAALAVQPGVCSPST*SLGGTRYLVLLPLP Trigger: GGGTAAAGGAAGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACTGCAAGAGCTGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
||
| CDS-3UTR CAA 90 bp | AAGGCTAAAACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTATCACTGCCAAGAGCCTaGGACCGGATCTTGCTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: KAKTPDFCRESHLPGRKLSLPRA*DRILLS Trigger: TGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGA...TAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS GCA 90 bp | AGGCTTCATCCCAACGCTGTCGGTATTCCAGTCTTACCAGACCCCTaGCTGCATTGGGAACATAGGCTGTTACCAGGACAAAGGACTCAA | + |
|
Preference number: 5 (lower is better) Translates to: RLHPNAVGIPVLPDP*LHWEHRLLPGQRTQ Trigger: TTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGGATGAAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000154288.3 |
||
| CDS CCA 90 bp | CCCAACGCTGTCGGTATTCCAGTCTTACCAGACCCCTGCCTGCATTaGGAACATAGGCTGTTACCAGGACAAAGGACTCAAATTCAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: PNAVGIPVLPDPCLH*EHRLLPGQRTQIQP Trigger: TGGCTGAATTTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000154288.3 |
||
| CDS-3UTR CAA 90 bp | AAAACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGCCTTCTCGGTTTTCTTaGCTGCCCCCTTACTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: KTPDFCRESHLPGRKLLQPSRFS*LPPYSS Trigger: AGAAGAGTAAGGGGGCAGCAAAGAAAACCGAGAAGG...CTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS GCA 90 bp | AGGCTTCATCCCAACGCTGTCGGTATTCCAGTCTTACCAGACCCCTaGCTGCATTGGGAACATAGGCAATGCCATAAGAGACTTTTAGCG | + |
|
Preference number: 5 (lower is better) Translates to: RLHPNAVGIPVLPDP*LHWEHRQCHKRLLA Trigger: CGCTAAAAGTCTCTTATGGCATTGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGGATGAAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128395.2 |
||
| CDS GCA 90 bp | TTCATCCCAACGCTGTCGGTATTCCAGTCTTACCAGACCCCTGCCTaGATTGGGAACATAGGCTGTTACCAGGACAAAGGACTCAAATTC | + |
|
Preference number: 5 (lower is better) Translates to: FIPTLSVFQSYQTPA*IGNIGCYQDKGLKF Trigger: GAATTTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGGATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000154288.3 |
||
| CDS-3UTR CAA 90 bp | GGGAGCACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAAGTTCAGCCGGGAGTTaGTTCTCCGAGCACTTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: GSTYKTKHLKAKTPDFCRSSAGS*FSEHLV Trigger: GACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACT...TCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | ACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGGAGTTCTTTTTGTTTCCTTaGGGGTTACGGAGGTCAATT | + |
|
Preference number: 5 (lower is better) Translates to: TPDFCRESHLPGRKLLQEFFLFP*GLRRSI Trigger: AATTGACCTCCGTAACCCCAAAGGAAACAAAAAGAA...CTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | AAAACACCAGACTTCTGCAGAGAGAGCCATCTCCCAGGCAGGAAGCTACTGCAGAAGCCAGCATTCTTTTaGTTTCCTTTGGGGTTACGG | + |
|
Preference number: 5 (lower is better) Translates to: KTPDFCRESHLPGRKLLQKPAFF*FPLGLR Trigger: CCGTAACCCCAAAGGAAACAAAAAGAATGCTGGCTT...CTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | GGGAGCACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGCCTTGGACCGGATCTaGCTGTCACACAATGCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: GSTYKTKHLKAKTPDFCRALDRI*LSHNAG Trigger: ACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGGC...TCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS CCA 90 bp | GGGCATTCATCATGTAAGTCCAGAAAGTGTAAGCGTAAGCAGTGTTaGGGTAGAGATGCCGGAAGCTGTCAGCCAATGGTACAGCTTGTA | + |
|
Preference number: 5 (lower is better) Translates to: GHSSCKSRKCKRKQC*GRDAGSCQPMVQLV Trigger: TACAAGCTGTACCATTGGCTGACAGCTTCCGGCATCTCTACCCCAACACTGCTTACGCTTACACTTTCTGGACTTACATGATGAATGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS TCA 90 bp | TGTTTCCTTTGGGGTTACGGAGGTCAATTTCTTCATGAGCCACATTaGGATCCCCACATAGCACAAGAGGCTTTCTGGAAGCCAAGTCCT | + |
|
Preference number: 5 (lower is better) Translates to: CFLWGYGGQFLHEPH*DPHIAQEAFWKPSP Trigger: AGGACTTGGCTTCCAGAAAGCCTCTTGTGCTATGTGGGGATCTCAATGTGGCTCATGAAGAAATTGACCTCCGTAACCCCAAAGGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | ACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGAGCCGAGCACTTGGTCTCTaGGAGGCACAAGATATCTGG | + |
|
Preference number: 5 (lower is better) Translates to: TYKTKHLKAKTPDFCRESRALGL*EAQDIW Trigger: CCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCG...GCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | ACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGAGCCCTTCTCGGTTTTCTTaGCTGCCCCCTTACTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: TYKTKHLKAKTPDFCRESPSRFS*LPPYSS Trigger: AGAAGAGTAAGGGGGCAGCAAAGAAAACCGAGAAGG...GCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | TTTGGTTTAATGTTTAAAATGAGGGAGCACATACAAAACCAAACACCTGAAGGCGAGTCCAGGCAGCTCTaGCAGTTCAGCCGGGAGTTT | + |
|
Preference number: 5 (lower is better) Translates to: FGLMFKMREHIQNQTPEGESRQL*QFSREF Trigger: AAACTCCCGGCTGAACTGCAAGAGCTGCCTGGACTC...GCCTTCAGGTGTTTGGTTTTGTATGTGCTCCCTCATTTTAAACATTAAACCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | AAAGTAGGGCCTTTTATTTCTCTTGGATTGTCTAAAGGAAACCAGAAGTTTGGTGAGTCCAGGCAGCTCTaGCAGTTCAGCCGGGAGTTT | + |
|
Preference number: 5 (lower is better) Translates to: KVGPFISLGLSKGNQKFGESRQL*QFSREF Trigger: AAACTCCCGGCTGAACTGCAAGAGCTGCCTGGACTC...ACCAAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | ACATACAAAACCAAACACCTGAAGGCTAAAACACCAGACTTCTGCAGAGAGAGCAAGCCAGCATTCTTTTaGTTTCCTTTGGGGTTACGG | + |
|
Preference number: 5 (lower is better) Translates to: TYKTKHLKAKTPDFCRESKPAFF*FPLGLR Trigger: CCGTAACCCCAAAGGAAACAAAAAGAATGCTGGCTT...GCTCTCTCTGCAGAAGTCTGGTGTTTTAGCCTTCAGGTGTTTGGTTTTGTATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | GTAGGGCCTTTTATTTCTCTTGGATTGTCTAAAGGAAACCAGAAGTTTGGTTTAGCCTTGGACCGGATCTaGCTGTCACACAATGCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: VGPFISLGLSKGNQKFGLALDRI*LSHNAG Trigger: ACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGGC...TAAACCAAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | GTAGGGCCTTTTATTTCTCTTGGATTGTCTAAAGGAAACCAGAAGTTTGGTTTACGAGCACTTGGTCTCTaGGAGGCACAAGATATCTGG | + |
|
Preference number: 5 (lower is better) Translates to: VGPFISLGLSKGNQKFGLRALGL*EAQDIW Trigger: CCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCG...TAAACCAAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | TTTGGTTTAATGTTTAAAATGAGGGAGCACATACAAAACCAAACACCTGAAGGCCCACTGTATCCTTCTTaGTCTGACGGAGCTGACCAG | + |
|
Preference number: 5 (lower is better) Translates to: FGLMFKMREHIQNQTPEGPLYPS*SDGADQ Trigger: CTGGTCAGCTCCGTCAGACAAAGAAGGATACAGTGG...GCCTTCAGGTGTTTGGTTTTGTATGTGCTCCCTCATTTTAAACATTAAACCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | GTAGGGCCTTTTATTTCTCTTGGATTGTCTAAAGGAAACCAGAAGTTTGGTTTATTGAGTGTGGCAGATTaGCCACTGGGTGAGGTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: VGPFISLGLSKGNQKFGLLSVAD*PLGEVF Trigger: GAAAACCTCACCCAGTGGCAAATCTGCCACACTCAA...TAAACCAAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | GTAGGGCCTTTTATTTCTCTTGGATTGTCTAAAGGAAACCAGAAGTTTGGTTTATTCCAGGAGCATATCTaGAGTGTGGCAGATTTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: VGPFISLGLSKGNQKFGLFQEHI*SVADLP Trigger: TGGCAAATCTGCCACACTCAAGATATGCTCCTGGAA...TAAACCAAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS-3UTR CAA 90 bp | AAAGTAGGGCCTTTTATTTCTCTTGGATTGTCTAAAGGAAACCAGAAGTTTGGTTTCTTTTTGTTTCCTTaGGGGTTACGGAGGTCAATT | + |
|
Preference number: 5 (lower is better) Translates to: KVGPFISLGLSKGNQKFGFFLFP*GLRRSI Trigger: AATTGACCTCCGTAACCCCAAAGGAAACAAAAAGAA...ACCAAACTTCTGGTTTCCTTTAGACAATCCAAGAGAAATAAAAGGCCCTACTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS CAA 72 bp | GTGAGTCCAGGCAGCTCTTGCAGTTCAGCCGGGAGTTaGTTCTCCGAGCACTTGGTCTCTTGGAGGCACAAG | + |
|
Preference number: 6 (lower is better) Translates to: VSPGSSCSSAGS*FSEHLVSWRHK Trigger: CTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACTGCAAGAGCTGCCTGGACTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
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| CDS TCA 72 bp | TTGAGTGTGGCAGATTTGCCACTGGGTGAGGTTTTCTaGTCTGGAGGGTCCTCGTACAGGACAGGGCCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LSVADLPLGEVF*SGGSSYRTGPS Trigger: AGAGGGCCCTGTCCTGTACGAGGACCCTCCAGATCAGAAAACCTCACCCAGTGGCAAATCTGCCACACTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
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| CDS TCA 72 bp | CTTCTTTGTCTGACGGAGCTGACCAGTACTGATGGGTaGGTCCAGGCAGCTCTTGCAGTTCAGCCGGGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: LLCLTELTSTDG*VQAALAVQPGV Trigger: AACTCCCGGCTGAACTGCAAGAGCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCCGTCAGACAAAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
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| CDS GCA 72 bp | CCCAACGCTGTCGGTATTCCAGTCTTACCAGACCCCTaGCTGCATTGGGAACATAGGCTGTTACCAGGACAA | + |
|
Preference number: 6 (lower is better) Translates to: PNAVGIPVLPDP*LHWEHRLLPGQ Trigger: TTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000154288.3 |
||
| CDS CAA 90 bp | CCAGGCAGCTCTTGCAGTTCAGCCGGGAGTTTGTTCTCCGAGCACTaGGTCTCTTGGAGGCACAAGATATCTGGTGCTTCTTCCTTTACC | + |
|
Preference number: 6 (lower is better) Translates to: PGSSCSSAGSLFSEH*VSWRHKISGASSFT Trigger: GGTAAAGGAAGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACTGCAAGAGCTGCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
||
| CDS TCA 72 bp | GGAGCATATCTTGAGTGTGGCAGATTTGCCACTGGGTaGGGTTTTCTGATCTGGAGGGTCCTCGTACAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: GAYLECGRFATG*GFLIWRVLVQD Trigger: GTCCTGTACGAGGACCCTCCAGATCAGAAAACCTCACCCAGTGGCAAATCTGCCACACTCAAGATATGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
||
| CDS GCA 72 bp | ACGCTGTCGGTATTCCAGTCTTACCAGACCCCTGCCTaGATTGGGAACATAGGCTGTTACCAGGACAAAGGA | + |
|
Preference number: 6 (lower is better) Translates to: TLSVFQSYQTPA*IGNIGCYQDKG Trigger: TCCTTTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000154288.3 |
||
| CDS GCA 72 bp | TTACCAGACCCCTGCCTGCATTGGGAACATAGGCAATaGCATAAGAGACTTTTAGCGGGCACTGGCGGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: LPDPCLHWEHRQ*HKRLLAGTGGK Trigger: TTTCCCGCCAGTGCCCGCTAAAAGTCTCTTATGGCATTGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128395.2 |
||
| CDS GCA 72 bp | CCCAACGCTGTCGGTATTCCAGTCTTACCAGACCCCTaGCTGCATTGGGAACATAGGCAATGCCATAAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: PNAVGIPVLPDP*LHWEHRQCHKR Trigger: TCTCTTATGGCATTGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128395.2 |
||
| CDS CAA 72 bp | CAGGCTCGAAGCCCATCCACATTCCAGGAGCATATCTaGAGTGTGGCAGATTTGCCACTGGGTGAGGTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: QARSPSTFQEHI*SVADLPLGEVF Trigger: GAAAACCTCACCCAGTGGCAAATCTGCCACACTCAAGATATGCTCCTGGAATGTGGATGGGCTTCGAGCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
||
| CDS CAA 90 bp | AGGGTGATGGGACAGTGGTCACTGCCAAGAGCCTTGGACCGGATCTaGCTGTCACACAATGCAGGTAAAAGAGAGTGGGAAAGCAAAAAG | + |
|
Preference number: 6 (lower is better) Translates to: RVMGQWSLPRALDRI*LSHNAGKREWESKK Trigger: CTTTTTGCTTTCCCACTCTCTTTTACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGACCACTGTCCCATCACCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS TCA 72 bp | AGGCTCGAAGCCCATCCACATTCCAGGAGCATATCTTaGGTGTGGCAGATTTGCCACTGGGTGAGGTTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: RLEAHPHSRSIS*VWQICHWVRFS Trigger: AGAAAACCTCACCCAGTGGCAAATCTGCCACACTCAAGATATGCTCCTGGAATGTGGATGGGCTTCGAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
||
| CDS GCA 72 bp | GACAGTGGTCACTGCCAAGAGCCTTGGACCGGATCTTaGTGTCACACAATGCAGGTAAAAGAGAGTGGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: DSGHCQEPWTGS*CHTMQVKESGK Trigger: TTTCCCACTCTCTTTTACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGACCACTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
||
| CDS CCA 72 bp | TCAGCCGGGAGTTTGTTCTCCGAGCACTTGGTCTCTTaGAGGCACAAGATATCTGGTGCTTCTTCCTTTACC | + |
|
Preference number: 6 (lower is better) Translates to: SAGSLFSEHLVS*RHKISGASSFT Trigger: GGTAAAGGAAGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
||
| CDS CCA 72 bp | CTTGCAGTTCAGCCGGGAGTTTGTTCTCCGAGCACTTaGTCTCTTGGAGGCACAAGATATCTGGTGCTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: LAVQPGVCSPST*SLGGTRYLVLL Trigger: AAGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACTGCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
||
| CDS CCA 72 bp | GTCGGTATTCCAGTCTTACCAGACCCCTGCCTGCATTaGGAACATAGGCTGTTACCAGGACAAAGGACTCAA | + |
|
Preference number: 6 (lower is better) Translates to: VGIPVLPDPCLH*EHRLLPGQRTQ Trigger: TTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000154288.3 |
||
| CDS CAA 72 bp | TCTTGCAGTTCAGCCGGGAGTTTGTTCTCCGAGCACTaGGTCTCTTGGAGGCACAAGATATCTGGTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SCSSAGSLFSEH*VSWRHKISGAS Trigger: AGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACTGCAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
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| CDS GCA 72 bp | ACGCTGTCGGTATTCCAGTCTTACCAGACCCCTGCCTaGATTGGGAACATAGGCAATGCCATAAGAGACTTT | + |
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Preference number: 6 (lower is better) Translates to: TLSVFQSYQTPA*IGNIGNAIRDF Trigger: AAAGTCTCTTATGGCATTGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128395.2 |
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| CDS CAA 72 bp | TTCAGCCGGGAGTTTGTTCTCCGAGCACTTGGTCTCTaGGAGGCACAAGATATCTGGTGCTTCTTCCTTTAC | + |
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Preference number: 6 (lower is better) Translates to: FSREFVLRALGL*EAQDIWCFFLY Trigger: GTAAAGGAAGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 ENSMUST00000136753.8 ENSMUST00000154288.3 |
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| CDS TCA 72 bp | TGGGGTTACGGAGGTCAATTTCTTCATGAGCCACATTaGGATCCCCACATAGCACAAGAGGCTTTCTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: WGYGGQFLHEPH*DPHIAQEAFWK Trigger: CTTCCAGAAAGCCTCTTGTGCTATGTGGGGATCTCAATGTGGCTCATGAAGAAATTGACCTCCGTAACCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS CCA 72 bp | TCATGTAAGTCCAGAAAGTGTAAGCGTAAGCAGTGTTaGGGTAGAGATGCCGGAAGCTGTCAGCCAATGGTA | + |
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Preference number: 6 (lower is better) Translates to: SCKSRKCKRKQC*GRDAGSCQPMV Trigger: TACCATTGGCTGACAGCTTCCGGCATCTCTACCCCAACACTGCTTACGCTTACACTTTCTGGACTTACATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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| CDS TCA 72 bp | TTGTTTCCTTTGGGGTTACGGAGGTCAATTTCTTCATaGGCCACATTGAGATCCCCACATAGCACAAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: LFPLGLRRSISS*ATLRSPHSTRG Trigger: GCCTCTTGTGCTATGTGGGGATCTCAATGTGGCTCATGAAGAAATTGACCTCCGTAACCCCAAAGGAAACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049411.12 ENSMUST00000128395.2 |
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