Pregenerated sensors for APELA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079042Ensembl transcript IDs: ENSMUST00000124790.8, ENSMUST00000142822.4
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGAGAATCCAGGAAGAGCAGTCTGAAAAGCCATCCACGGTACTCTaGAACAGCCTCTGTTGCGTAGTAACTCCTGAGCTGCCATCCTGT | + |
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Preference number: 1 (lower is better) Translates to: KRIQEEQSEKPSTVL*NSLCCVVTPELPSC Trigger: ACAGGATGGCAGCTCAGGAGTTACTACGCAACAGAGGCTGTTTCAGAGTACCGTGGATGGCTTTTCAGACTGCTCTTCCTGGATTCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR-3UTR CCA 90 bp | AGAAAGGGGAAGGTATGTGTGTGCAAATGTAGTCAGTGTATATGGCATGCATGCTATGATGCACATGTGTaGAAAGACGGCCATAGGACG | + |
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Preference number: 2 (lower is better) Translates to: RKGKVCVCKCSQCIWHACYDAHV*KDGHRT Trigger: CGTCCTATGGCCGTCTTTCCACACATGTGCATCATA...GCATGCATGCCATATACACTGACTACATTTGCACACACATACCTTCCCCTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR-3UTR GCA 90 bp | TTCTTGTCAAAGAGAATCCAGGAAGAGCAGTCTGAAAAGCCATCCACGGTACTCGTGATTGGGTATCTTTaGTTTCACCCTTCTTCTGGT | + |
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Preference number: 2 (lower is better) Translates to: FLSKRIQEEQSEKPSTVLVIGYL*FHPSSG Trigger: ACCAGAAGAAGGGTGAAAGCAAAGATACCCAATCAC...GAGTACCGTGGATGGCTTTTCAGACTGCTCTTCCTGGATTCTCTTTGACAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR-3UTR GCA 90 bp | TTCATACATTATACGCAAAGAACGTGCAGAACAGCAGGAGAGATTGTTATTCAGGAGCTGCCATCCTGTTaGCATCCTGAGGTTGTTTTT | + |
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Preference number: 2 (lower is better) Translates to: FIHYTQRTCRTAGEIVIQELPSC*HPEVVF Trigger: AAAAACAACCTCAGGATGGCAACAGGATGGCAGCTC...CTGAATAACAATCTCTCCTGCTGTTCTGCACGTTCTTTGCGTATAATGTATGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR TCA 72 bp | CAGGAAGAGCAGTCTGAAAAGCCATCCACGGTACTCTaGAACAGCCTCTGTTGCGTAGTAACTCCTGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: QEEQSEKPSTVL*NSLCCVVTPEL Trigger: CAGCTCAGGAGTTACTACGCAACAGAGGCTGTTTCAGAGTACCGTGGATGGCTTTTCAGACTGCTCTTCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR GCA 72 bp | CTCTGTTGCGTAGTAACTCCTGAGCTGCCATCCTGTTaGCATCCTGAGGTTGTTTTTCCGGTGATTGGGTAT | + |
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Preference number: 3 (lower is better) Translates to: LCCVVTPELPSC*HPEVVFPVIGY Trigger: ATACCCAATCACCGGAAAAACAACCTCAGGATGGCAACAGGATGGCAGCTCAGGAGTTACTACGCAACAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR-3UTR CAA 90 bp | TGTTGCGTAGTAACTCCTGAGCTGCCATCCTGTTGCCATCCTGAGGTTGTTTTTGGTGATTGGGTATCTTaGCTTTCACCCTTCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: CCVVTPELPSCCHPEVVFGDWVS*LSPFFW Trigger: CCAGAAGAAGGGTGAAAGCAAAGATACCCAATCACC...AAAAACAACCTCAGGATGGCAACAGGATGGCAGCTCAGGAGTTACTACGCAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR TCA 72 bp | TGCCATCCTGTTGCCATCCTGAGGTTGTTTTTCCGGTaGTTGGGTATCTTTGCTTTCACCCTTCTTCTGGTA | + |
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Preference number: 3 (lower is better) Translates to: CHPVAILRLFFR*LGIFAFTLLLV Trigger: TACCAGAAGAAGGGTGAAAGCAAAGATACCCAATCACCGGAAAAACAACCTCAGGATGGCAACAGGATGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR-3UTR CAA 90 bp | AACAGCAGGAGAGATTGTTATTCAGACAAACGCATGTGCTTTAACCTCGTCTGTGGTGATTGGGTATCTTaGCTTTCACCCTTCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: NSRRDCYSDKRMCFNLVCGDWVS*LSPFFW Trigger: CCAGAAGAAGGGTGAAAGCAAAGATACCCAATCACC...ACAGACGAGGTTAAAGCACATGCGTTTGTCTGAATAACAATCTCTCCTGCTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR GCA 72 bp | CATCCTGAGGTTGTTTTTCCGGTGATTGGGTATCTTTaGTTTCACCCTTCTTCTGGTAGAGCCAAGGAAATT | + |
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Preference number: 3 (lower is better) Translates to: HPEVVFPVIGYL*FHPSSGRAKEI Trigger: AATTTCCTTGGCTCTACCAGAAGAAGGGTGAAAGCAAAGATACCCAATCACCGGAAAAACAACCTCAGGATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| 3UTR GCA 72 bp | AACAGCAGGAGAGATTGTTATTCAGACAAACGCATGTaGTTTAACCTCGTCTGTTTTCCCTTTCTATCATTT | + |
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Preference number: 3 (lower is better) Translates to: NSRRDCYSDKRM*FNLVCFPFLSF Trigger: AAATGATAGAAAGGGAAAACAGACGAGGTTAAAGCACATGCGTTTGTCTGAATAACAATCTCTCCTGCTGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| CDS-3UTR TCA 90 bp | TGTTGCGTAGTAACTCCTGAGCTGCCATCCTGTTGCCATCCTGAGGTTGTTTTTAAGGGCACTCGAGAATaGAGTGGAATGCATCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: CCVVTPELPSCCHPEVVFKGTRE*SGMHLL Trigger: CAGGAGATGCATTCCACTTCATTCTCGAGTGCCCTT...AAAAACAACCTCAGGATGGCAACAGGATGGCAGCTCAGGAGTTACTACGCAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| CDS-3UTR TCA 90 bp | CCATCCTGTTGCCATCCTGAGGTTGTTTTTCCGGTGATTGGGTATCTTTGCTTTAAGGGCACTCGAGAATaGAGTGGAATGCATCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: PSCCHPEVVFPVIGYLCFKGTRE*SGMHLL Trigger: CAGGAGATGCATTCCACTTCATTCTCGAGTGCCCTT...AAAGCAAAGATACCCAATCACCGGAAAAACAACCTCAGGATGGCAACAGGATGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| CDS-3UTR GCA 90 bp | CCATCCTGTTGCCATCCTGAGGTTGTTTTTCCGGTGATTGGGTATCTTTGCTTTGTGGAATGCATCTCCTaGGAAAGCAGTTGTGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: PSCCHPEVVFPVIGYLCFVECIS*ESSCVC Trigger: ACAGACACAACTGCTTTCGCAGGAGATGCATTCCAC...AAAGCAAAGATACCCAATCACCGGAAAAACAACCTCAGGATGGCAACAGGATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| CDS-3UTR GCA 90 bp | TTTCCGGTGATTGGGTATCTTTGCTTTCACCCTTCTTCTGGTAGAGCCAAGGAAGTGGAATGCATCTCCTaGGAAAGCAGTTGTGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: FPVIGYLCFHPSSGRAKEVECIS*ESSCVC Trigger: ACAGACACAACTGCTTTCGCAGGAGATGCATTCCAC...TTCCTTGGCTCTACCAGAAGAAGGGTGAAAGCAAAGATACCCAATCACCGGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| CDS-3UTR CCA 90 bp | TGTTGCGTAGTAACTCCTGAGCTGCCATCCTGTTGCCATCCTGAGGTTGTTTTTCCTGGGAAAGTTAACTaGTTTCTGTTCACTGATAAA | + |
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Preference number: 4 (lower is better) Translates to: CCVVTPELPSCCHPEVVFPGKVN*FLFTDK Trigger: TTTATCAGTGAACAGAAACCAGTTAACTTTCCCAGG...AAAAACAACCTCAGGATGGCAACAGGATGGCAGCTCAGGAGTTACTACGCAACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| CDS-3UTR CCA 90 bp | AACAGCAGGAGAGATTGTTATTCAGACAAACGCATGTGCTTTAACCTCGTCTGTCACTCGAGAATGAAGTaGAATGCATCTCCTGCGAAA | + |
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Preference number: 4 (lower is better) Translates to: NSRRDCYSDKRMCFNLVCHSRMK*NASPAK Trigger: TTTCGCAGGAGATGCATTCCACTTCATTCTCGAGTG...ACAGACGAGGTTAAAGCACATGCGTTTGTCTGAATAACAATCTCTCCTGCTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| CDS-3UTR CCA 90 bp | AGAAAGGGGAAGGTATGTGTGTGCAAATGTAGTCAGTGTATATGGCATGCATGCCCTGGGAAAGTTAACTaGTTTCTGTTCACTGATAAA | + |
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Preference number: 4 (lower is better) Translates to: RKGKVCVCKCSQCIWHACPGKVN*FLFTDK Trigger: TTTATCAGTGAACAGAAACCAGTTAACTTTCCCAGG...GCATGCATGCCATATACACTGACTACATTTGCACACACATACCTTCCCCTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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| CDS-3UTR CCA 90 bp | TTCATACATTATACGCAAAGAACGTGCAGAACAGCAGGAGAGATTGTTATTCAGCACTCGAGAATGAAGTaGAATGCATCTCCTGCGAAA | + |
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Preference number: 4 (lower is better) Translates to: FIHYTQRTCRTAGEIVIQHSRMK*NASPAK Trigger: TTTCGCAGGAGATGCATTCCACTTCATTCTCGAGTG...CTGAATAACAATCTCTCCTGCTGTTCTGCACGTTCTTTGCGTATAATGTATGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124790.8 ENSMUST00000142822.4 |
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