Pregenerated sensors for APCS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026542

Ensembl transcript IDs: ENSMUST00000027824.7

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGGTCCCAGGACTATACTaGGTGGGGCTTTCACAGTGT	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKVPGLY*VGLSQC Trigger: ACACTGTGAAAGCCCCACCCAGTATAGTCCTGGGAC...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR TCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGTCCTACAAAGGACTGTaGCCTTTGAAACCCTCCTCC	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKSYKGL*PLKPSS Trigger: GGAGGAGGGTTTCAAAGGTCACAGTCCTTTGTAGGA...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR CCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGAGGAGGACTCCCAAGTaGTACATAGGTGTACTGGAG	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKRRTPK*YIGVLE Trigger: CTCCAGTACACCTATGTACCACTTGGGAGTCCTCCT...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR TCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGCTGACAAAAGGCTTCTaGAAGAAGGCTGGTGAAGAC	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKLTKGF*KKAGED Trigger: GTCTTCACCAGCCTTCTTTCAGAAGCCTTTTGTCAG...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR TCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGCATTGTCTCTGCCCTTaGCACTGTAGGAGAAAAGAC	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKHCLCP*HCRRKD Trigger: GTCTTTTCTCCTACAGTGTCAAGGGCAGAGACAATG...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR TCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGCTGAAAGAAGGCTGGTaGAGACAAACATCCAAAGCA	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKLKEGW*RQTSKA Trigger: TGCTTTGGATGTTTGTCTTCACCAGCCTTCTTTCAG...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR TCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGGGGATCAGCTTCACATaGTCAGTTTCAGATTCTCTG	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKGISFT*SVSDSL Trigger: CAGAGAATCTGAAACTGATCATGTGAAGCTGATCCC...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR TCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGCCCAAGGCTTTCCATTaGCCCAAAATTCAACAATGC	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKPKAFH*PKIQQC Trigger: GCATTGTTGAATTTTGGGTCAATGGAAAGCCTTGGG...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR TCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGCAAATACTTTCCTCTTaGGGTCTGTCTGACAAAAGG	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKQILSS*GLSDKR Trigger: CCTTTTGTCAGACAGACCTCAAGAGGAAAGTATTTG...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR CCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGCAGTTTCAGATTCTCTaGGGAACACAAATACTTTCC	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKQFQIL*GTQILS Trigger: GGAAAGTATTTGTGTTCCCCAGAGAATCTGAAACTG...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR GCA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGCACAGTGTAAAATTCTaGAGAGGTTTCTCTAGATGT	+
Preference number: 4 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKHSVKF*RGFSRC Trigger: ACATCTAGAGAAACCTCTGCAGAATTTTACACTGTG...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR CAA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGACCCAAGGCTTTCCATaGACCCAAAATTCAACAATG	+
Preference number: 5 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKTQGFP*TQNSTM Trigger: CATTGTTGAATTTTGGGTCAATGGAAAGCCTTGGGT...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS TCA 90 bp	TCAGATTCTCTGGGGAACACAAATACTTTCCTCTTGAGGTCTGTCTaGCAAAAGGCTTCTGAAAGAAGGCTGGTGAAGACAAACATCCAA	+
Preference number: 5 (lower is better) Translates to: SDSLGNTNTFLLRSV*QKASERRLVKTNIQ Trigger: TTGGATGTTTGTCTTCACCAGCCTTCTTTCAGAAGCCTTTTGTCAGACAGACCTCAAGAGGAAAGTATTTGTGTTCCCCAGAGAATCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS-3UTR CAA 90 bp	TGCCTTGACCTCTTACACATCGGCCATCTGATGTCCATGAGGTTTTGTTGTAAGTTCAAAATATTAGGATaGACAGGGGAATCTCTGTAC	+
Preference number: 5 (lower is better) Translates to: CLDLLHIGHLMSMRFCCKFKILG*TGESLY Trigger: GTACAGAGATTCCCCTGTCAATCCTAATATTTTGAA...CTTACAACAAAACCTCATGGACATCAGATGGCCGATGTGTAAGAGGTCAAGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS TCA 90 bp	GTAAAATTCTGCAGAGGTTTCTCTAGATGTGGGATCAGCTTCACATaGTCAGTTTCAGATTCTCTGGGGAACACAAATACTTTCCTCTTG	+
Preference number: 5 (lower is better) Translates to: VKFCRGFSRCGISFT*SVSDSLGNTNTFLL Trigger: CAAGAGGAAAGTATTTGTGTTCCCCAGAGAATCTGAAACTGATCATGTGAAGCTGATCCCACATCTAGAGAAACCTCTGCAGAATTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS CCA 72 bp	CTCCGTAGTTATCCTGCTCCTGTCCCAGGACTATACTaGGTGGGGCTTTCACAGTGTATTCCCTCTGCAGAG	+
Preference number: 6 (lower is better) Translates to: LRSYPAPVPGLY*VGLSQCIPSAE Trigger: CTCTGCAGAGGGAATACACTGTGAAAGCCCCACCCAGTATAGTCCTGGGACAGGAGCAGGATAACTACGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS CCA 72 bp	GTAGTTATCCTGCTCCTGTCCCAGGACTATACTGGGTaGGGCTTTCACAGTGTATTCCCTCTGCAGAGACTT	+
Preference number: 6 (lower is better) Translates to: VVILLLSQDYTG*GFHSVFPLQRL Trigger: AAGTCTCTGCAGAGGGAATACACTGTGAAAGCCCCACCCAGTATAGTCCTGGGACAGGAGCAGGATAACTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS TCA 72 bp	TTTCAGATTCTCTGGGGAACACAAATACTTTCCTCTTaGGGTCTGTCTGACAAAAGGCTTCTGAAAGAAGGC	+
Preference number: 6 (lower is better) Translates to: FQILWGTQILSS*GLSDKRLLKEG Trigger: GCCTTCTTTCAGAAGCCTTTTGTCAGACAGACCTCAAGAGGAAAGTATTTGTGTTCCCCAGAGAATCTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS TCA 72 bp	TGCAGAGGTTTCTCTAGATGTGGGATCAGCTTCACATaGTCAGTTTCAGATTCTCTGGGGAACACAAATACT	+
Preference number: 6 (lower is better) Translates to: CRGFSRCGISFT*SVSDSLGNTNT Trigger: AGTATTTGTGTTCCCCAGAGAATCTGAAACTGATCATGTGAAGCTGATCCCACATCTAGAGAAACCTCTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027824.7
CDS TCA 72 bp	TTTCTTTATAAATTAGTAGCTCATTGTCTCTGCCCTTaGCACTGTAGGAGAAAAGACTCTGAGAGCGGGAAA	+
Preference number: 6 (lower is better) Translates to: FLYKLVAHCLCP*HCRRKDSESGK Trigger: TTTCCCGCTCTCAGAGTCTTTTCTCCTACAGTGTCAAGGGCAGAGACAATGAGCTACTAATTTATAAAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027824.7