RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APCDD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071847

Ensembl transcript IDs: ENSMUST00000096554.12, ENSMUST00000163716.3, ENSMUST00000236135.2, ENSMUST00000237428.2

Found 388 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CATCCCCTCCTCCCTTCGGATGACTGTGAAGCGGCGAACCCTGAATaGGATGGCTCTGGACCTCGCAGGTGGGGCAGAACCAGGGAAATG +
Preference number: 1 (lower is better)
Translates to: HPLLPSDDCEAANPE*DGSGPRRWGRTREM
Trigger: CATTTCCCTGGTTCTGCCCCACCTGCGAGGTCCAGAGCCATCTCATTCAGGGTTCGCCGCTTCACAGTCATCCGAAGGGAGGAGGGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 90 bp TTGGGGCTTGCTGCCACGACCAAGCAGCAGAAGACCCTCGTCAGATaGAGCTGCTGGAGTGCAGGCATCGCAGTCTCCAGAACCACAAAG +
Preference number: 1 (lower is better)
Translates to: LGLAATTKQQKTLVR*SCWSAGIAVSRTTK
Trigger: CTTTGTGGTTCTGGAGACTGCGATGCCTGCACTCCAGCAGCTGCATCTGACGAGGGTCTTCTGCTGCTTGGTCGTGGCAGCAAGCCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp GACCAAGGGCATCTGGTAGGATGTGGCTCTCTTCTCTGGTCTGTCTaGGCTGGAGCCATCGCTGGGCCTCTGGCCATTGAACAGCAGGTA +
Preference number: 1 (lower is better)
Translates to: DQGHLVGCGSLLWSV*AGAIAGPLAIEQQV
Trigger: TACCTGCTGTTCAATGGCCAGAGGCCCAGCGATGGCTCCAGCCCAGACAGACCAGAGAAGAGAGCCACATCCTACCAGATGCCCTTGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR CCA 90 bp TCTCTTATGTACTCAACACCAACCCAGGCTCTCCTGTCGCAAACATaGGGTCTTCATGGCGGTCCCAAGCCAACGCTGCACTGGGTTCCA +
Preference number: 1 (lower is better)
Translates to: SLMYSTPTQALLSQT*GLHGGPKPTLHWVP
Trigger: TGGAACCCAGTGCAGCGTTGGCTTGGGACCGCCATGAAGACCCCATGTTTGCGACAGGAGAGCCTGGGTTGGTGTTGAGTACATAAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp CGCTATGCTTTGACATTCATGATTGGGAGTCCCATTCCCACACTGTaGCAGGGCTGGAATGTGGAGCCAATAGCAGGGGCCGGAGGTCAA +
Preference number: 1 (lower is better)
Translates to: RYALTFMIGSPIPTL*QGWNVEPIAGAGGQ
Trigger: TTGACCTCCGGCCCCTGCTATTGGCTCCACATTCCAGCCCTGCCACAGTGTGGGAATGGGACTCCCAATCATGAATGTCAAAGCATAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp GTGATTCACTTTGAACACAAACTCCGTGCCACCCATGACCTTAGATaGGAGCACACCGCGGCTGTAGCGGCCTCGAGCGTAGATGGTGAA +
Preference number: 1 (lower is better)
Translates to: VIHFEHKLRATHDLR*EHTAAVAASSVDGE
Trigger: TTCACCATCTACGCTCGAGGCCGCTACAGCCGCGGTGTGCTCTCATCTAAGGTCATGGGTGGCACGGAGTTTGTGTTCAAAGTGAATCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR CCA 90 bp CTCAGGAAGAAAAGAAGGCTGGCGCTATGCTTTGACATTCATGATTaGGAGTCCCATTCCCACACTGTGGCAGGGCTGGAATGTGGAGCC +
Preference number: 1 (lower is better)
Translates to: LRKKRRLALCFDIHD*ESHSHTVAGLECGA
Trigger: GGCTCCACATTCCAGCCCTGCCACAGTGTGGGAATGGGACTCCCAATCATGAATGTCAAAGCATAGCGCCAGCCTTCTTTTCTTCCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp AGCTTTGCAGGAGCCAGTTGGTTCTCTCCTTCTACTGTGAGGGCTTaGGGGATAGAGCTCAGGTCGATTGTTAGGCTCAACGCAAGTGTC +
Preference number: 1 (lower is better)
Translates to: SFAGASWFSPSTVRA*GIELRSIVRLNASV
Trigger: GACACTTGCGTTGAGCCTAACAATCGACCTGAGCTCTATCCCCCAAGCCCTCACAGTAGAAGGAGAGAACCAACTGGCTCCTGCAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp TATGAAGTTCTCAGGCCACGGATCGGGCGGGAAGACATTCAAAGCTaGAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGT +
Preference number: 1 (lower is better)
Translates to: YEVLRPRIGREDIQS*NFKHTAHGAEAGRG
Trigger: ACCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGCCCGATCCGTGGCCTGAGAACTTCATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp TGGAGCAGGAGCTGCTCTGAATTTCCCAACTGGATCAGTCTCCTCTaGGGGTTAAGCAGCAGGCTGTACTCTGTAGCCACCAAACCAAGT +
Preference number: 1 (lower is better)
Translates to: WSRSCSEFPNWISLL*GLSSRLYSVATKPS
Trigger: ACTTGGTTTGGTGGCTACAGAGTACAGCCTGCTGCTTAACCCTCAGAGGAGACTGATCCAGTTGGGAAATTCAGAGCAGCTCCTGCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 90 bp GATGCTGTTTTCAGCAGGGCTTCAATCTCGTGGGACTGGATTTGTTaGCAGAACAGACCTGATAACGCAAGTCCACCCTTCATGCTCGCC +
Preference number: 1 (lower is better)
Translates to: DAVFSRASISWDWIC*QNRPDNASPPFMLA
Trigger: GGCGAGCATGAAGGGTGGACTTGCGTTATCAGGTCTGTTCTGGCAACAAATCCAGTCCCACGAGATTGAAGCCCTGCTGAAAACAGCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 90 bp AAGTTTCTTCTCCAAGCAGAATCCACAAGACCCACAGGCTGTTTCTaGAGGCCACCATGGCATTCAGGAATGCCAGCAACCCTGGTTGTG +
Preference number: 1 (lower is better)
Translates to: KFLLQAESTRPTGCF*RPPWHSGMPATLVV
Trigger: CACAACCAGGGTTGCTGGCATTCCTGAATGCCATGGTGGCCTGCAGAAACAGCCTGTGGGTCTTGTGGATTCTGCTTGGAGAAGAAACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp CCAAGCCAACGCTGCACTGGGTTCCAGTGTCGAAAACCTCGAGTGTaGAAGGGATTTGGAGAGATAAAGAGAAGCAATGGCAGAGAGAGC +
Preference number: 1 (lower is better)
Translates to: PSQRCTGFQCRKPRV*KGFGEIKRSNGRES
Trigger: GCTCTCTCTGCCATTGCTTCTCTTTATCTCTCCAAATCCCTTCCACACTCGAGGTTTTCGACACTGGAACCCAGTGCAGCGTTGGCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp TGCTTTCAAGGCGTTAACGCTTCCTTCTCGGCTGGAGAGCCAGAATaGGCAGCACCTGTTCCCATCCAAAGCCTTTCACCTGAGGAATTT +
Preference number: 1 (lower is better)
Translates to: CFQGVNASFSAGEPE*AAPVPIQSLSPEEF
Trigger: AAATTCCTCAGGTGAAAGGCTTTGGATGGGAACAGGTGCTGCCCATTCTGGCTCTCCAGCCGAGAAGGAAGCGTTAACGCCTTGAAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp TTGAGGAGGGAGGCTGTGGCTGCGTCCATGGGAGTAACCTTCATGTaGTTCACTTTGAACACAAACTCCGTGCCACCCATGACCTTAGAT +
Preference number: 1 (lower is better)
Translates to: LRREAVAASMGVTFM*FTLNTNSVPPMTLD
Trigger: ATCTAAGGTCATGGGTGGCACGGAGTTTGTGTTCAAAGTGAATCACATGAAGGTTACTCCCATGGACGCAGCCACAGCCTCCCTCCTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR TCA 90 bp CTTCATCCCTGGGCTGGTGGCCCTGGGTTCTATAAGAAAGCAGGCTaGGCAAACAAGGAGGAACAAGATAATGAGCAGCATCCTTCCTTG +
Preference number: 1 (lower is better)
Translates to: LHPWAGGPGFYKKAG*ANKEEQDNEQHPSL
Trigger: CAAGGAAGGATGCTGCTCATTATCTTGTTCCTCCTTGTTTGCTCAGCCTGCTTTCTTATAGAACCCAGGGCCACCAGCCCAGGGATGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 90 bp AGGGAAGTTTCTGCCACACCACTCCCAGCCTGTGAGACTCTGACCTaGTTGCTTAGACAGGAAGATGGTTTGCAAAGAACCTTTAGGCAG +
Preference number: 1 (lower is better)
Translates to: REVSATPLPACETLT*LLRQEDGLQRTFRQ
Trigger: CTGCCTAAAGGTTCTTTGCAAACCATCTTCCTGTCTAAGCAAGCAGGTCAGAGTCTCACAGGCTGGGAGTGGTGTGGCAGAAACTTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp ATCCCAGGGAAGTTTCTGCCACACCACTCCCAGCCTGTGAGACTCTaGCCTGCTTGCTTAGACAGGAAGATGGTTTGCAAAGAACCTTTA +
Preference number: 1 (lower is better)
Translates to: IPGKFLPHHSQPVRL*PACLDRKMVCKEPL
Trigger: TAAAGGTTCTTTGCAAACCATCTTCCTGTCTAAGCAAGCAGGTCAGAGTCTCACAGGCTGGGAGTGGTGTGGCAGAAACTTCCCTGGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp TTGCCCACTGCACTGCTCCTCCCCGCCCCCAGAAACAGACATCACTaGAAGAGGTTTAGCATCTCCTTGTTTGTAACTGATGCATTTGCT +
Preference number: 1 (lower is better)
Translates to: LPTALLLPAPRNRHH*KRFSISLFVTDAFA
Trigger: AGCAAATGCATCAGTTACAAACAAGGAGATGCTAAACCTCTTTCAGTGATGTCTGTTTCTGGGGGCGGGGAGGAGCAGTGCAGTGGGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp CCCATTGAAAAGTATGTTCAGAGGCCTAAACAGAGTGCAGAATCATaGACCTGCAGCAAACTACCCAGGTGCTCTGATACCGGTGGGCAC +
Preference number: 1 (lower is better)
Translates to: PIEKYVQRPKQSAES*TCSKLPRCSDTGGH
Trigger: GTGCCCACCGGTATCAGAGCACCTGGGTAGTTTGCTGCAGGTTCATGATTCTGCACTCTGTTTAGGCCTCTGAACATACTTTTCAATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 90 bp CCCACACTCATTCCCACTGAAGACATTGAGGAGGGAGGCTGTGGCTaGGTCCATGGGAGTAACCTTCATGTGATTCACTTTGAACACAAA +
Preference number: 1 (lower is better)
Translates to: PTLIPTEDIEEGGCG*VHGSNLHVIHFEHK
Trigger: TTTGTGTTCAAAGTGAATCACATGAAGGTTACTCCCATGGACGCAGCCACAGCCTCCCTCCTCAATGTCTTCAGTGGGAATGAGTGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR GCA 90 bp GTCTACCTGCAGGAGGAGGCTGGGCACAGATGTGTGAGTACACACTaGTGCTATGTAGTTTTCCGTCAACTTGGTCTACAGGGTAAATTC +
Preference number: 1 (lower is better)
Translates to: VYLQEEAGHRCVSTH*CYVVFRQLGLQGKF
Trigger: GAATTTACCCTGTAGACCAAGTTGACGGAAAACTACATAGCAGCAGTGTGTACTCACACATCTGTGCCCAGCCTCCTCCTGCAGGTAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp GAACGGAATGATGCTGTTTTCAGCAGGGCTTCAATCTCGTGGGACTaGATTTGTTGCCAGAACAGACCTGATAACGCAAGTCCACCCTTC +
Preference number: 1 (lower is better)
Translates to: ERNDAVFSRASISWD*ICCQNRPDNASPPF
Trigger: GAAGGGTGGACTTGCGTTATCAGGTCTGTTCTGGCAACAAATCCAGTCCCACGAGATTGAAGCCCTGCTGAAAACAGCATCATTCCGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp CCGACTAACAGGGGGACTTGCCAGGTGCTGAGTACTGAACTATGGTaGATTTCAAACTTGCTATGTAAATGGACTAGTCTAGGGTCAGGC +
Preference number: 1 (lower is better)
Translates to: PTNRGTCQVLSTELW*ISNLLCKWTSLGSG
Trigger: GCCTGACCCTAGACTAGTCCATTTACATAGCAAGTTTGAAATCCACCATAGTTCAGTACTCAGCACCTGGCAAGTCCCCCTGTTAGTCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp CACCATGAACGGAATGATGCTGTTTTCAGCAGGGCTTCAATCTCGTaGGACTGGATTTGTTGCCAGAACAGACCTGATAACGCAAGTCCA +
Preference number: 1 (lower is better)
Translates to: HHERNDAVFSRASIS*DWICCQNRPDNASP
Trigger: TGGACTTGCGTTATCAGGTCTGTTCTGGCAACAAATCCAGTCCCACGAGATTGAAGCCCTGCTGAAAACAGCATCATTCCGTTCATGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp GTATTAAGAAATGAGCTTCACAGATCTGCCTGCTCAGGTTTAAGTTaGCACGAGGTTCCGAAGAGTCACTGCTTCTCCGGGATGTTTCCT +
Preference number: 1 (lower is better)
Translates to: VLRNELHRSACSGLS*HEVPKSHCFSGMFP
Trigger: AGGAAACATCCCGGAGAAGCAGTGACTCTTCGGAACCTCGTGCCAACTTAAACCTGAGCAGGCAGATCTGTGAAGCTCATTTCTTAATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp AGCAGAATTACCCACCACCGACTAACAGGGGGACTTGCCAGGTGCTaGGTACTGAACTATGGTGGATTTCAAACTTGCTATGTAAATGGA +
Preference number: 1 (lower is better)
Translates to: SRITHHRLTGGLARC*VLNYGGFQTCYVNG
Trigger: TCCATTTACATAGCAAGTTTGAAATCCACCATAGTTCAGTACTCAGCACCTGGCAAGTCCCCCTGTTAGTCGGTGGTGGGTAATTCTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp AGGATCAAATTCAGATCAACAGGCTTGGCGGCAAGATCATTATACTaGGCCATCTTGCTGGCCCATCAAGCTAAATGCACCCTCAACTTG +
Preference number: 1 (lower is better)
Translates to: RIKFRSTGLAARSLY*AILLAHQAKCTLNL
Trigger: CAAGTTGAGGGTGCATTTAGCTTGATGGGCCAGCAAGATGGCTCAGTATAATGATCTTGCCGCCAAGCCTGTTGATCTGAATTTGATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp TCTTCTATCATGCAGGTCCTAGGATCAAATTCAGATCAACAGGCTTaGCGGCAAGATCATTATACTGAGCCATCTTGCTGGCCCATCAAG +
Preference number: 1 (lower is better)
Translates to: SSIMQVLGSNSDQQA*RQDHYTEPSCWPIK
Trigger: CTTGATGGGCCAGCAAGATGGCTCAGTATAATGATCTTGCCGCCAAGCCTGTTGATCTGAATTTGATCCTAGGACCTGCATGATAGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp ACTGAGCTGCATCCCTCCGTGATTGTTTGGTGTATTTATTTAGACTaGATGAGAAAAAGTCTGCAGCAGCTCCCTATTGGTTGGGCATGG +
Preference number: 1 (lower is better)
Translates to: TELHPSVIVWCIYLD*MRKSLQQLPIGWAW
Trigger: CCATGCCCAACCAATAGGGAGCTGCTGCAGACTTTTTCTCATTCAGTCTAAATAAATACACCAAACAATCACGGAGGGATGCAGCTCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp ATTAAAACAAGGGAAATCGAAAGAACAACGAAAGCATCTCAGTATTaGCTTGTCATGTCTGACCCTCAAGTCTGGATGGCCTCGAGCTCC +
Preference number: 1 (lower is better)
Translates to: IKTREIERTTKASQY*LVMSDPQVWMASSS
Trigger: GGAGCTCGAGGCCATCCAGACTTGAGGGTCAGACATGACAAGTCAATACTGAGATGCTTTCGTTGTTCTTTCGATTTCCCTTGTTTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp GGCAGTATTCACAACAAAACATTGCATGGTCTTTGTGCAGTGGCATaGAAATCGTGCATTCGGGCTAAGTTGGGAGAGATGGTAGAATAC +
Preference number: 1 (lower is better)
Translates to: GSIHNKTLHGLCAVA*KSCIRAKLGEMVEY
Trigger: GTATTCTACCATCTCTCCCAACTTAGCCCGAATGCACGATTTTCATGCCACTGCACAAAGACCATGCAATGTTTTGTTGTGAATACTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 90 bp GTGTGTTTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTaGACCATAGTACACTATAGAACTCAGAAGATAGCTTTGCAGGAG +
Preference number: 1 (lower is better)
Translates to: VCLCVCVFVCVCVCV*TIVHYRTQKIALQE
Trigger: CTCCTGCAAAGCTATCTTCTGAGTTCTATAGTGTACTATGGTGCACACACACACACACACACACACAAACACACACACACACAAACACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp TCCCTGTATGAACACCAAACCTTCTTAACCAGTGATCGATCCCAATaGCTCCAAGAGGAACTTTTTAAAGAGGACATTGTGTGTGATGGA +
Preference number: 1 (lower is better)
Translates to: SLYEHQTFLTSDRSQ*LQEELFKEDIVCDG
Trigger: TCCATCACACACAATGTCCTCTTTAAAAAGTTCCTCTTGGAGCCATTGGGATCGATCACTGGTTAAGAAGGTTTGGTGTTCATACAGGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp AACCAGAATGGTCTCTTCTCTTTTAGGAAACCTTCCCTGAAAGCCTaGACTTCCATGTTTATAAAACTCCGTGTGACATCACTCAGTGCT +
Preference number: 1 (lower is better)
Translates to: NQNGLFSFRKPSLKA*TSMFIKLRVTSLSA
Trigger: AGCACTGAGTGATGTCACACGGAGTTTTATAAACATGGAAGTTCAGGCTTTCAGGGAAGGTTTCCTAAAAGAGAAGAGACCATTCTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 90 bp TGTTTCCTGCCATTTAGTTCCAGGCTAATAAGGAAACATTGTGGTTaGCTAGAATTTGCTATGGATATGGGAGTGTGCAAGGATAGACTC +
Preference number: 1 (lower is better)
Translates to: CFLPFSSRLIRKHCG*LEFAMDMGVCKDRL
Trigger: GAGTCTATCCTTGCACACTCCCATATCCATAGCAAATTCTAGGCAACCACAATGTTTCCTTATTAGCCTGGAACTAAATGGCAGGAAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp ACTCTTTCATGGAAACATATACCAGGATTCACAGAGAGCCTTAATTaGTGTTCCCTTATCACTACTCAGAGACAACCCTGTGAAGACAAG +
Preference number: 1 (lower is better)
Translates to: TLSWKHIPGFTESLN*CSLITTQRQPCEDK
Trigger: CTTGTCTTCACAGGGTTGTCTCTGAGTAGTGATAAGGGAACATCAATTAAGGCTCTCTGTGAATCCTGGTATATGTTTCCATGAAAGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp ACCATGATATGCACACTCATGGTATGTCTGCTGGTGAAAATCTGTTaGTTCTCTTCTTCTATCATGCAGGTCCTAGGATCAAATTCAGAT +
Preference number: 1 (lower is better)
Translates to: TMICTLMVCLLVKIC*FSSSIMQVLGSNSD
Trigger: ATCTGAATTTGATCCTAGGACCTGCATGATAGAAGAAGAGAACCAACAGATTTTCACCAGCAGACATACCATGAGTGTGCATATCATGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 90 bp TATTGTGCTCCAAGACATCTCAATTTGTTCTTACAATCCAGGATCTaGCTCATGATGCTGAATAACTCGGGCTTTATACATTTGCCCACT +
Preference number: 1 (lower is better)
Translates to: YCAPRHLNLFLQSRI*LMMLNNSGFIHLPT
Trigger: AGTGGGCAAATGTATAAAGCCCGAGTTATTCAGCATCATGAGCCAGATCCTGGATTGTAAGAACAAATTGAGATGTCTTGGAGCACAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 90 bp CAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTaGAGGAAAGTCATACACGGTAAAGAGTCTTGGTTCAGGAAATGT +
Preference number: 1 (lower is better)
Translates to: QGIQVHQKNQCPFSV*RKVIHGKESWFRKC
Trigger: ACATTTCCTGAACCAAGACTCTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR TCA 90 bp TGGAATGCTCCCAAAGTAGATAATAGAGATGATTGTGTGAAATGGTaGAGTACTGTGTTTCATGGAATTGTACTCTTGAAGATGGTTAAA +
Preference number: 1 (lower is better)
Translates to: WNAPKVDNRDDCVKW*STVFHGIVLLKMVK
Trigger: TTTAACCATCTTCAAGAGTACAATTCCATGAAACACAGTACTTCACCATTTCACACAATCATCTCTATTATCTACTTTGGGAGCATTCCA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR GCA 90 bp GCTGGGCCTCTGGCCATTGAACAGCAGGTAGCGGCCTCGGGTGTCTTGCTCCATTGTTGGATACCCACCTaGCAGGAGCCCTCAGCCCCA +
Preference number: 2 (lower is better)
Translates to: AGPLAIEQQVAASGVLLHCWIPT*QEPSAP
Trigger: TGGGGCTGAGGGCTCCTGGCAGGTGGGTATCCAACA...ATGGAGCAAGACACCCGAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR-3UTR CCA 90 bp GCTGGAGCCATCGCTGGGCCTCTGGCCATTGAACAGCAGGTAGCGGCCTCGGGTGAGCCACGCAGCCATTaGTATGTGTCACATCCTGTT +
Preference number: 2 (lower is better)
Translates to: AGAIAGPLAIEQQVAASGEPRSH*YVSHPV
Trigger: AACAGGATGTGACACATACCAATGGCTGCGTGGCTC...ACCCGAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCAGCGATGGCTCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR-3UTR TCA 90 bp TCTGTCTGGGCTGGAGCCATCGCTGGGCCTCTGGCCATTGAACAGCAGGTAGCGCTTGCAGACAGGGTCTaGGTAGTGGTAGTAATGCCC +
Preference number: 2 (lower is better)
Translates to: SVWAGAIAGPLAIEQQVALADRV*VVVVMP
Trigger: GGGCATTACTACCACTACTCAGACCCTGTCTGCAAG...CGCTACCTGCTGTTCAATGGCCAGAGGCCCAGCGATGGCTCCAGCCCAGACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR-3UTR CCA 90 bp GCTGGGCCTCTGGCCATTGAACAGCAGGTAGCGGCCTCGGGTGTCTTGCTCCATGTGTTGTTGTTGTCGTaGAAGATGAAGTGGCGGGTG +
Preference number: 2 (lower is better)
Translates to: AGPLAIEQQVAASGVLLHVLLLS*KMKWRV
Trigger: CACCCGCCACTTCATCTTCCACGACAACAACAACAC...ATGGAGCAAGACACCCGAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR CAA 90 bp GTCTGCAGCAGCTCCCTATTGGTTGGGCATGGGCATAAGTGTCCATaGCCACTGAAGCAGGAAGCCAATGCTGAGCCAGTGCTGAGCCAG +
Preference number: 2 (lower is better)
Translates to: VCSSSLLVGHGHKCP*PLKQEANAEPVLSQ
Trigger: CTGGCTCAGCACTGGCTCAGCATTGGCTTCCTGCTTCAGTGGCAATGGACACTTATGCCCATGCCCAACCAATAGGGAGCTGCTGCAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR GCA 90 bp GATCTGATCATATCCCAGTGGTGGAGAAGTCAGAGGCCACAGCCTCCCGTATGGCTGGTGTACTCCTCTTaGAGAGGAGCAGAGTTTGGC +
Preference number: 2 (lower is better)
Translates to: DLIISQWWRSQRPQPPVWLVYSS*RGAEFG
Trigger: GCCAAACTCTGCTCCTCTGCAAGAGGAGTACACCAG...CCATACGGGAGGCTGTGGCCTCTGACTTCTCCACCACTGGGATATGATCAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp TCGGCTGGAGAGCCAGAATGGGCAGCACCTGTTCCCATCCAAAGCCTTTCACCTATCATATCCCAGTGGTaGAGAAGTCAGAGGCCACAG +
Preference number: 2 (lower is better)
Translates to: SAGEPEWAAPVPIQSLSPIISQW*RSQRPQ
Trigger: CTGTGGCCTCTGACTTCTCCACCACTGGGATATGAT...AGGTGAAAGGCTTTGGATGGGAACAGGTGCTGCCCATTCTGGCTCTCCAGCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp TCCAGGATCTGGCTCATGATGCTGAATAACTCGGGCTTTATACATTaGCCCACTGCACTGCTCCTCCCCGCCCCCAGAAACAGACATCAC +
Preference number: 2 (lower is better)
Translates to: SRIWLMMLNNSGFIH*PTALLLPAPRNRHH
Trigger: GTGATGTCTGTTTCTGGGGGCGGGGAGGAGCAGTGCAGTGGGCAAATGTATAAAGCCCGAGTTATTCAGCATCATGAGCCAGATCCTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR TCA 90 bp GCTGGGCCTCTGGCCATTGAACAGCAGGTAGCGGCCTCGGGTGTCTTGCTCCATGGAGTAACCTTCATGTaGTTCACTTTGAACACAAAC +
Preference number: 2 (lower is better)
Translates to: AGPLAIEQQVAASGVLLHGVTFM*FTLNTN
Trigger: GTTTGTGTTCAAAGTGAATCACATGAAGGTTACTCC...ATGGAGCAAGACACCCGAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR-3UTR CCA 90 bp ATCACTACTCAGAGACAACCCTGTGAAGACAAGCCAGCATGCTCACCCTCTTTGTCTGGACCTCGCAGGTaGGGCAGAACCAGGGAAATG +
Preference number: 2 (lower is better)
Translates to: ITTQRQPCEDKPACSPSLSGPRR*GRTREM
Trigger: CATTTCCCTGGTTCTGCCCCACCTGCGAGGTCCAGA...CAAAGAGGGTGAGCATGCTGGCTTGTCTTCACAGGGTTGTCTCTGAGTAGTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR TCA 90 bp GAAGAGGTGGGGAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCTGTCCTTTCTCTGTGTaGAGGAAAGTCATACACGGT +
Preference number: 2 (lower is better)
Translates to: EEVGRGEATAGLKAFKCICPFSV*RKVIHG
Trigger: ACCGTGTATGACTTTCCTTCACACAGAGAAAGGACA...GATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTCCCCACCTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp GGGAGTAACCTTCATGTGATTCACTTTGAACACAAACTCCGTGCCACCCATGACCTCACCCATTCCCCGTaGAGGCCAATGGTCAGGTCA +
Preference number: 2 (lower is better)
Translates to: GSNLHVIHFEHKLRATHDLTHSP*RPMVRS
Trigger: TGACCTGACCATTGGCCTCCACGGGGAATGGGTGAG...GTCATGGGTGGCACGGAGTTTGTGTTCAAAGTGAATCACATGAAGGTTACTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR-3UTR CCA 90 bp TCGGCTGGAGAGCCAGAATGGGCAGCACCTGTTCCCATCCAAAGCCTTTCACCTGGGGATTGGTTCACTTaGAGAAAAACTCCACAGATC +
Preference number: 2 (lower is better)
Translates to: SAGEPEWAAPVPIQSLSPGDWFT*RKTPQI
Trigger: GATCTGTGGAGTTTTTCTCCAAGTGAACCAATCCCC...AGGTGAAAGGCTTTGGATGGGAACAGGTGCTGCCCATTCTGGCTCTCCAGCCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp TCTGTGTTGTTCCCTCGGAGAGAGCTCGCTCAGGGGCAGGAAGGATaGCTGGGTTTAAACAGGGCTGATCATATGCCCTACCTATTTATG +
Preference number: 2 (lower is better)
Translates to: SVLFPRRELAQGQEG*LGLNRADHMPYLFM
Trigger: CATAAATAGGTAGGGCATATGATCAGCCCTGTTTAAACCCAGCAATCCTTCCTGCCCCTGAGCGAGCTCTCTCCGAGGGAACAACACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR GCA 90 bp GGCTTGCTGCCACGACCAAGCAGCAGAAGACCCTCGTCAGATGCAGCTGCTGGACTTTGTGGGCATATATaGAGCATATTGTTAAAGGGT +
Preference number: 2 (lower is better)
Translates to: GLLPRPSSRRPSSDAAAGLCGHI*SILLKG
Trigger: ACCCTTTAACAATATGCTGCATATATGCCCACAAAG...TCCAGCAGCTGCATCTGACGAGGGTCTTCTGCTGCTTGGTCGTGGCAGCAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp GAAGTTTCTGCCACACCACTCCCAGCCTGTGAGACTCTGACCTGCTaGCTTAGACAGGAAGATGGTTTGCAAAGAACCTTTAGGCAGACT +
Preference number: 2 (lower is better)
Translates to: EVSATPLPACETLTC*LRQEDGLQRTFRQT
Trigger: AGTCTGCCTAAAGGTTCTTTGCAAACCATCTTCCTGTCTAAGCAAGCAGGTCAGAGTCTCACAGGCTGGGAGTGGTGTGGCAGAAACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGCAAACACACTGCTCATaGCGCAGAGGCTGGAAGAGG +
Preference number: 2 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGQTHCS*RRGWKR
Trigger: CCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTG...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR TCA 90 bp GGCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGTGTCCTTTCTCTGTGTaGAGGAAAGTCATACACGGT +
Preference number: 2 (lower is better)
Translates to: GGKTFKAETSNTLLMAQRCPFSV*RKVIHG
Trigger: ACCGTGTATGACTTTCCTTCACACAGAGAAAGGACA...CCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR-3UTR TCA 90 bp GCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGTCCTTTCTCTGTGTaGAGGAAAGTCATACACGGT +
Preference number: 2 (lower is better)
Translates to: AGRHSKLKLQTHCSWRRGCPFSV*RKVIHG
Trigger: ACCGTGTATGACTTTCCTTCACACAGAGAAAGGACA...GCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR-3UTR GCA 90 bp TGTAGGCATCCAAGGAGACTAGAAGAGGCTGTTGGATCCTTTGAAGCTATTGTTGCCTGGAGCAGGAGCTaGTCTGAATTTCCCAACTGG +
Preference number: 2 (lower is better)
Translates to: CRHPRRLEEAVGSFEAIVAWSRS*SEFPNW
Trigger: CCAGTTGGGAAATTCAGAGCAGCTCCTGCTCCAGGC...AACAATAGCTTCAAAGGATCCAACAGCCTCTTCTAGTCTCCTTGGATGCCTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp ATCACTACTCAGAGACAACCCTGTGAAGACAAGCCAGCATGCTCACCCTCTTTGAAGCCAGTGACACTCTaGCCTTCTGTTCGGGATTTT +
Preference number: 2 (lower is better)
Translates to: ITTQRQPCEDKPACSPSLKPVTL*PSVRDF
Trigger: AAAATCCCGAACAGAAGGCCAGAGTGTCACTGGCTT...CAAAGAGGGTGAGCATGCTGGCTTGTCTTCACAGGGTTGTCTCTGAGTAGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGGCAGTTCTCAACCTATaGGTCATGACCCTTTGGGGG +
Preference number: 2 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGAVLNL*VMTLWG
Trigger: CCCCCAAAGGGTCATGACCCATAGGTTGAGAACTGC...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp GAGCTCCACTGTGGCTTCAAGGTCACACATAACATCAAGATCACCTaGGCACACATAAGGGACCTGACTCTAGAGACCCTATTGCTGTTA +
Preference number: 2 (lower is better)
Translates to: ELHCGFKVTHNIKIT*AHIRDLTLETLLLL
Trigger: TAACAGCAATAGGGTCTCTAGAGTCAGGTCCCTTATGTGTGCCAAGGTGATCTTGATGTTATGTGTGACCTTGAAGCCACAGTGGAGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp GCATCGCAGTCTCCAGAACCACAAAGCAAAATAAACCTGCATCCTTaGCCAACCATCCAGCCTCATGTTCTGCTACATCAGTGGCCTAAA +
Preference number: 2 (lower is better)
Translates to: ASQSPEPQSKINLHP*PTIQPHVLLHQWPK
Trigger: TTTAGGCCACTGATGTAGCAGAACATGAGGCTGGATGGTTGGCAAAGGATGCAGGTTTATTTTGCTTTGTGGTTCTGGAGACTGCGATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp ATCGATCCCAATGGCTCCAAGAGGAACTTTTTAAAGAGGACATTGTGTGTGATGAACATGGGGTCTTCATaGCGGTCCCAAGCCAACGCT +
Preference number: 2 (lower is better)
Translates to: IDPNGSKRNFLKRTLCVMNMGSS*RSQANA
Trigger: AGCGTTGGCTTGGGACCGCCATGAAGACCCCATGTT...CATCACACACAATGTCCTCTTTAAAAAGTTCCTCTTGGAGCCATTGGGATCGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGCTCCACCTACCTTCATaGGTCTCTGTGAGCAATAGC +
Preference number: 2 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGLHLPS*VSVSNS
Trigger: GCTATTGCTCACAGAGACCCATGAAGGTAGGTGGAG...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp AAACAAGGGAAATCGAAAGAACAACGAAAGCATCTCAGTATTGACTaGTCATGTCTGACCCTCAAGTCTGGATGGCCTCGAGCTCCACTG +
Preference number: 2 (lower is better)
Translates to: KQGKSKEQRKHLSID*SCLTLKSGWPRAPL
Trigger: CAGTGGAGCTCGAGGCCATCCAGACTTGAGGGTCAGACATGACAAGTCAATACTGAGATGCTTTCGTTGTTCTTTCGATTTCCCTTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR TCA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGATAACCAAGCCGAGATaGATGCACTTGGGAGTGATG +
Preference number: 2 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGITKPR*MHLGVM
Trigger: CATCACTCCCAAGTGCATTCATCTCGGCTTGGTTAT...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR TCA 90 bp ATCACTACTCAGAGACAACCCTGTGAAGACAAGCCAGCATGCTCACCCTCTTTGTATAAGAAAGCAGGCTaGGCAAACAAGGAGGAACAA +
Preference number: 2 (lower is better)
Translates to: ITTQRQPCEDKPACSPSLYKKAG*ANKEEQ
Trigger: TTGTTCCTCCTTGTTTGCTCAGCCTGCTTTCTTATA...CAAAGAGGGTGAGCATGCTGGCTTGTCTTCACAGGGTTGTCTCTGAGTAGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR TCA 90 bp ATCACTACTCAGAGACAACCCTGTGAAGACAAGCCAGCATGCTCACCCTCTTTGAGAGACCCATTCTCTTaGATTATGGTATTGGTGAGG +
Preference number: 2 (lower is better)
Translates to: ITTQRQPCEDKPACSPSLRDPFS*IMVLVR
Trigger: CCTCACCAATACCATAATTCAAGAGAATGGGTCTCT...CAAAGAGGGTGAGCATGCTGGCTTGTCTTCACAGGGTTGTCTCTGAGTAGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR GCA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGGCCCATCAAGCTAAATaGACCCTCAACTTGATAGGC +
Preference number: 2 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGAHQAK*TLNLIG
Trigger: GCCTATCAAGTTGAGGGTGCATTTAGCTTGATGGGC...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp CAGAGACAGAAAGCAAATTGGTGGTTGCTGGTGTGTGTGTGTGTGTGTGTGTGTCAGGACACAGGGGATTaGTTCACTTGGAGAAAAACT +
Preference number: 2 (lower is better)
Translates to: QRQKANWWLLVCVCVCVCQDTGD*FTWRKT
Trigger: AGTTTTTCTCCAAGTGAACCAATCCCCTGTGTCCTG...ACACACACACACACACACACACACCAGCAACCACCAATTTGCTTTCTGTCTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp GATCTGATCATATCCCAGTGGTGGAGAAGTCAGAGGCCACAGCCTCCCGTATGGAGTACTGAACTATGGTaGATTTCAAACTTGCTATGT +
Preference number: 2 (lower is better)
Translates to: DLIISQWWRSQRPQPPVWSTELW*ISNLLC
Trigger: ACATAGCAAGTTTGAAATCCACCATAGTTCAGTACT...CCATACGGGAGGCTGTGGCCTCTGACTTCTCCACCACTGGGATATGATCAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGACTGAGCCATCTTGCTaGCCCATCAAGCTAAATGCA +
Preference number: 2 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGTEPSC*PIKLNA
Trigger: TGCATTTAGCTTGATGGGCCAGCAAGATGGCTCAGT...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp AACGTGGGATACATAGTAAGACACTGTCTTAAAAGTAGGCAGGTGTaGGAGGATAGACTGGTGTACTCCTCTTGCAGAGGAGCAGAGTTT +
Preference number: 2 (lower is better)
Translates to: NVGYIVRHCLKSRQV*EDRLVYSSCRGAEF
Trigger: AAACTCTGCTCCTCTGCAAGAGGAGTACACCAGTCTATCCTCCAACACCTGCCTACTTTTAAGACAGTGTCTTACTATGTATCCCACGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp TTCCAAGTCAGACATAGTAGAACTGGTCTGTCATTCCAGCACTTATaGCATGGAGGCAGAAGGACCATAAATTCAAGGCCAACGTGGGAT +
Preference number: 2 (lower is better)
Translates to: FQVRHSRTGLSFQHL*HGGRRTINSRPTWD
Trigger: ATCCCACGTTGGCCTTGAATTTATGGTCCTTCTGCCTCCATGCAATAAGTGCTGGAATGACAGACCAGTTCTACTATGTCTGACTTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp CATGAACGAAGTGGGATAATGACTAAAAAGGAGCTATCTTCATCATaGGTGATTGTGCTGCAAGCCAGTGACACTCTGGCCTTCTGTTCG +
Preference number: 2 (lower is better)
Translates to: HERSGIMTKKELSSS*VIVLQASDTLAFCS
Trigger: CGAACAGAAGGCCAGAGTGTCACTGGCTTGCAGCACAATCACCAATGATGAAGATAGCTCCTTTTTAGTCATTATCCCACTTCGTTCATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR TCA 90 bp AGTCTCAGTGTCATGTATCTCAAATCTTGTAGGGATGGAAGGCAGTATTCACAAGAGCAGGAGCTGCTCTaGATTTCCCAACTGGATCAG +
Preference number: 2 (lower is better)
Translates to: SLSVMYLKSCRDGRQYSQEQELL*ISQLDQ
Trigger: CTGATCCAGTTGGGAAATTCAGAGCAGCTCCTGCTC...TTGTGAATACTGCCTTCCATCCCTACAAGATTTGAGATACATGACACTGAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR GCA 90 bp CAGAGACAGAAAGCAAATTGGTGGTTGCTGGTGTGTGTGTGTGTGTGTGTGTGTGACAGGAAGATGGTTTaGAAAGAACCTTTAGGCAGA +
Preference number: 2 (lower is better)
Translates to: QRQKANWWLLVCVCVCVCDRKMV*KEPLGR
Trigger: TCTGCCTAAAGGTTCTTTGCAAACCATCTTCCTGTC...ACACACACACACACACACACACACCAGCAACCACCAATTTGCTTTCTGTCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp GGGACTTGCCAGGTGCTGAGTACTGAACTATGGTGGATTTCAAACTaGCTATGTAAATGGACTAGTCTAGGGTCAGGCATACCTTTTTCA +
Preference number: 2 (lower is better)
Translates to: GTCQVLSTELWWISN*LCKWTSLGSGIPFS
Trigger: TGAAAAAGGTATGCCTGACCCTAGACTAGTCCATTTACATAGCAAGTTTGAAATCCACCATAGTTCAGTACTCAGCACCTGGCAAGTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp CTCACATGTAGTGGGGGAGCACAAATCCACACAGGTCTGTTTGCTTaGCTTCTTTTTCACTATGTGTGTGTGTGTATGTGTGTGTGTGTT +
Preference number: 2 (lower is better)
Translates to: LTCSGGAQIHTGLFA*LLFHYVCVCMCVCV
Trigger: AACACACACACACATACACACACACACATAGTGAAAAAGAAGCAAAGCAAACAGACCTGTGTGGATTTGTGCTCCCCCACTACATGTGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR GCA 90 bp ATCACTACTCAGAGACAACCCTGTGAAGACAAGCCAGCATGCTCACCCTCTTTGTTTATTTGTTCTTTCTaGAGACATAGCCTTGTGGGA +
Preference number: 2 (lower is better)
Translates to: ITTQRQPCEDKPACSPSLFICSF*RHSLVG
Trigger: TCCCACAAGGCTATGTCTGCAGAAAGAACAAATAAA...CAAAGAGGGTGAGCATGCTGGCTTGTCTTCACAGGGTTGTCTCTGAGTAGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR GCA 90 bp ATCACTACTCAGAGACAACCCTGTGAAGACAAGCCAGCATGCTCACCCTCTTTGGGGACCACTATAAAATaGCATATATTTTGGAAAGCA +
Preference number: 2 (lower is better)
Translates to: ITTQRQPCEDKPACSPSLGTTIK*HIFWKA
Trigger: TGCTTTCCAAAATATATGGCATTTTATAGTGGTCCC...CAAAGAGGGTGAGCATGCTGGCTTGTCTTCACAGGGTTGTCTCTGAGTAGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp CAGAGACAGAAAGCAAATTGGTGGTTGCTGGTGTGTGTGTGTGTGTGTGTGTGTTGGAGCACTGATGTTTaGTTTCTGTGTGTTAAAGAT +
Preference number: 2 (lower is better)
Translates to: QRQKANWWLLVCVCVCVCWSTDV*FLCVKD
Trigger: ATCTTTAACACACAGAAACCAAACATCAGTGCTCCA...ACACACACACACACACACACACACCAGCAACCACCAATTTGCTTTCTGTCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 90 bp AAATCGTGCATTCGGGCTAAGTTGGGAGAGATGGTAGAATACCAATaGGTTCTTTTCCTGAAGTTTCTTCTCCAAGCAGAATCCACAAGA +
Preference number: 2 (lower is better)
Translates to: KSCIRAKLGEMVEYQ*VLFLKFLLQAESTR
Trigger: TCTTGTGGATTCTGCTTGGAGAAGAAACTTCAGGAAAAGAACCAATTGGTATTCTACCATCTCTCCCAACTTAGCCCGAATGCACGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR GCA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGGGTGGATTTCAAACTTaGTATGTAAATGGACTAGTC +
Preference number: 2 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGGGFQT*YVNGLV
Trigger: GACTAGTCCATTTACATAGCAAGTTTGAAATCCACC...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp AGTCTCAGTGTCATGTATCTCAAATCTTGTAGGGATGGAAGGCAGTATTCACAACCAGCACTTATTGCATaGAGGCAGAAGGACCATAAA +
Preference number: 2 (lower is better)
Translates to: SLSVMYLKSCRDGRQYSQPALIA*RQKDHK
Trigger: TTTATGGTCCTTCTGCCTCCATGCAATAAGTGCTGG...TTGTGAATACTGCCTTCCATCCCTACAAGATTTGAGATACATGACACTGAGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp ATCGATCCCAATGGCTCCAAGAGGAACTTTTTAAAGAGGACATTGTGTGTGATGCAACAAAACATTGCATaGTCTTTGTGCAGTGGCATG +
Preference number: 2 (lower is better)
Translates to: IDPNGSKRNFLKRTLCVMQQNIA*SLCSGM
Trigger: CATGCCACTGCACAAAGACCATGCAATGTTTTGTTG...CATCACACACAATGTCCTCTTTAAAAAGTTCCTCTTGGAGCCATTGGGATCGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CCA 90 bp GAAGCTATTGTTACAGACAGATATGAGCTTCCAGTCATAGGTGCTGGAAATCAATGGGTCATGACCCTTTaGGGGTATCAAATGACACTT +
Preference number: 2 (lower is better)
Translates to: EAIVTDRYELPVIGAGNQWVMTL*GYQMTL
Trigger: AAGTGTCATTTGATACCCCCAAAGGGTCATGACCCA...TTGATTTCCAGCACCTATGACTGGAAGCTCATATCTGTCTGTAACAATAGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp GTGAGGAAGAGGACCTCGGGGCGTACCTCGCAGCGCTaGCTCACCCATTCCCCGTGGAGGCCAATGGTCAGG +
Preference number: 3 (lower is better)
Translates to: VRKRTSGRTSQR*LTHSPWRPMVR
Trigger: CCTGACCATTGGCCTCCACGGGGAATGGGTGAGCCAGCGCTGCGAGGTACGCCCCGAGGTCCTCTTCCTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR TCA 72 bp TGTCTGGGCTGGAGCCATCGCTGGGCCTCTGGCCATTaGACAGCAGGTAGCGGCCTCGGGTGTCTTGCTCCA +
Preference number: 3 (lower is better)
Translates to: CLGWSHRWASGH*TAGSGLGCLAP
Trigger: TGGAGCAAGACACCCGAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCAGCGATGGCTCCAGCCCAGACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR-3UTR CAA 90 bp GCTGGAGCCATCGCTGGGCCTCTGGCCATTGAACAGCAGGTAGCGGCCTCGGGTAGAGCCACGCAGCCATaGGTATGTGTCACATCCTGT +
Preference number: 3 (lower is better)
Translates to: AGAIAGPLAIEQQVAASGRATQP*VCVTSC
Trigger: ACAGGATGTGACACATACCAATGGCTGCGTGGCTCT...ACCCGAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCAGCGATGGCTCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR TCA 72 bp GCACACCGCGGCTGTAGCGGCCTCGAGCGTAGATGGTaGATGTGGGGTGCTTGCAGACAGGGTCTGAGTAGT +
Preference number: 3 (lower is better)
Translates to: AHRGCSGLERRW*MWGACRQGLSS
Trigger: ACTACTCAGACCCTGTCTGCAAGCACCCCACATTCACCATCTACGCTCGAGGCCGCTACAGCCGCGGTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR GCA 72 bp GCTGCCACGACCAAGCAGCAGAAGACCCTCGTCAGATaGAGCTGCTGGAGTGCAGGCATCGCAGTCTCCAGA +
Preference number: 3 (lower is better)
Translates to: AATTKQQKTLVR*SCWSAGIAVSR
Trigger: TCTGGAGACTGCGATGCCTGCACTCCAGCAGCTGCATCTGACGAGGGTCTTCTGCTGCTTGGTCGTGGCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp CGCAAGTCCACCCTTCATGCTCGCCTCACGTTCACTTaGGGCTTGCTGCCACGACCAAGCAGCAGAAGACCC +
Preference number: 3 (lower is better)
Translates to: RKSTLHARLTFT*GLLPRPSSRRP
Trigger: GGGTCTTCTGCTGCTTGGTCGTGGCAGCAAGCCCCAAGTGAACGTGAGGCGAGCATGAAGGGTGGACTTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp AGGGAAGGCCTGGCCCATTGTGGGTGGCTTCATCCCTaGGCTGGTGGCCCTGGGTTCTATAAGAAAGCAGGC +
Preference number: 3 (lower is better)
Translates to: REGLAHCGWLHP*AGGPGFYKKAG
Trigger: GCCTGCTTTCTTATAGAACCCAGGGCCACCAGCCCAGGGATGAAGCCACCCACAATGGGCCAGGCCTTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp AGAGCCACGCAGCCATTGGTATGTGTCACATCCTGTTaGATACCCACCTGCCAGGAGCCCTCAGCCCCACAC +
Preference number: 3 (lower is better)
Translates to: RATQPLVCVTSC*IPTCQEPSAPH
Trigger: GTGTGGGGCTGAGGGCTCCTGGCAGGTGGGTATCCAACAGGATGTGACACATACCAATGGCTGCGTGGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR CCA 72 bp AACCCAGGCTCTCCTGTCGCAAACATGGGGTCTTCATaGCGGTCCCAAGCCAACGCTGCACTGGGTTCCAGT +
Preference number: 3 (lower is better)
Translates to: NPGSPVANMGSS*RSQANAALGSS
Trigger: ACTGGAACCCAGTGCAGCGTTGGCTTGGGACCGCCATGAAGACCCCATGTTTGCGACAGGAGAGCCTGGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp GCTGGGCCTCTGGCCATTGAACAGCAGGTAGCGGCCTCGGGTGTCTTGCTCCATATGTGTCACATCCTGTaGGATACCCACCTGCCAGGA +
Preference number: 3 (lower is better)
Translates to: AGPLAIEQQVAASGVLLHMCHIL*DTHLPG
Trigger: TCCTGGCAGGTGGGTATCCAACAGGATGTGACACAT...ATGGAGCAAGACACCCGAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR-3UTR CAA 90 bp GCTGGGCCTCTGGCCATTGAACAGCAGGTAGCGGCCTCGGGTGTCTTGCTCCATTCCCAGGTGTTGTTGTaGTCGTGGAAGATGAAGTGG +
Preference number: 3 (lower is better)
Translates to: AGPLAIEQQVAASGVLLHSQVLL*SWKMKW
Trigger: CCACTTCATCTTCCACGACAACAACAACACCTGGGA...ATGGAGCAAGACACCCGAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR GCA 72 bp ACGACCAAGCAGCAGAAGACCCTCGTCAGATGCAGCTaGTGGAGTGCAGGCATCGCAGTCTCCAGAACCACA +
Preference number: 3 (lower is better)
Translates to: TTKQQKTLVRCS*WSAGIAVSRTT
Trigger: TGTGGTTCTGGAGACTGCGATGCCTGCACTCCAGCAGCTGCATCTGACGAGGGTCTTCTGCTGCTTGGTCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp ATGATTGGGAGTCCCATTCCCACACTGTGGCAGGGCTaGAATGTGGAGCCAATAGCAGGGGCCGGAGGTCAA +
Preference number: 3 (lower is better)
Translates to: MIGSPIPTLWQG*NVEPIAGAGGQ
Trigger: TTGACCTCCGGCCCCTGCTATTGGCTCCACATTCCAGCCCTGCCACAGTGTGGGAATGGGACTCCCAATCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp TTTGAACACAAACTCCGTGCCACCCATGACCTTAGATaGGAGCACACCGCGGCTGTAGCGGCCTCGAGCGTA +
Preference number: 3 (lower is better)
Translates to: FEHKLRATHDLR*EHTAAVAASSV
Trigger: TACGCTCGAGGCCGCTACAGCCGCGGTGTGCTCTCATCTAAGGTCATGGGTGGCACGGAGTTTGTGTTCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR CCA 72 bp ACCAAGCAGCAGAAGACCCTCGTCAGATGCAGCTGCTaGAGTGCAGGCATCGCAGTCTCCAGAACCACAAAG +
Preference number: 3 (lower is better)
Translates to: TKQQKTLVRCSC*SAGIAVSRTTK
Trigger: CTTTGTGGTTCTGGAGACTGCGATGCCTGCACTCCAGCAGCTGCATCTGACGAGGGTCTTCTGCTGCTTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp TCCACAAGACCCACAGGCTGTTTCTGCAGGCCACCATaGCATTCAGGAATGCCAGCAACCCTGGTTGTGGCT +
Preference number: 3 (lower is better)
Translates to: STRPTGCFCRPP*HSGMPATLVVA
Trigger: AGCCACAACCAGGGTTGCTGGCATTCCTGAATGCCATGGTGGCCTGCAGAAACAGCCTGTGGGTCTTGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp GGCGTTAACGCTTCCTTCTCGGCTGGAGAGCCAGAATaGGCAGCACCTGTTCCCATCCAAAGCCTTTCACCT +
Preference number: 3 (lower is better)
Translates to: GVNASFSAGEPE*AAPVPIQSLSP
Trigger: AGGTGAAAGGCTTTGGATGGGAACAGGTGCTGCCCATTCTGGCTCTCCAGCCGAGAAGGAAGCGTTAACGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp ATGCCCAGAGCCACGCAGCCATTGGTATGTGTCACATCCTGTTGGATACCCACCTTCCCACTGAAGACATaGAGGAGGGAGGCTGTGGCT +
Preference number: 3 (lower is better)
Translates to: MPRATQPLVCVTSCWIPTFPLKT*RREAVA
Trigger: AGCCACAGCCTCCCTCCTCAATGTCTTCAGTGGGAA...GGTGGGTATCCAACAGGATGTGACACATACCAATGGCTGCGTGGCTCTGGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR TCA 72 bp CTCAGGCCACGGATCGGGCGGGAAGACATTCAAAGCTaGAACTTCAAACACACTGCTCATGGCGCAGAGGCT +
Preference number: 3 (lower is better)
Translates to: LRPRIGREDIQS*NFKHTAHGAEA
Trigger: AGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGCCCGATCCGTGGCCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp GCAGCAGAAGACCCTCGTCAGATGCAGCTGCTGGAGTaGAGGCATCGCAGTCTCCAGAACCACAAAGCAAAA +
Preference number: 3 (lower is better)
Translates to: AAEDPRQMQLLE*RHRSLQNHKAK
Trigger: TTTTGCTTTGTGGTTCTGGAGACTGCGATGCCTGCACTCCAGCAGCTGCATCTGACGAGGGTCTTCTGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp CTCCAAGCAGAATCCACAAGACCCACAGGCTGTTTCTaGAGGCCACCATGGCATTCAGGAATGCCAGCAACC +
Preference number: 3 (lower is better)
Translates to: LQAESTRPTGCF*RPPWHSGMPAT
Trigger: GGTTGCTGGCATTCCTGAATGCCATGGTGGCCTGCAGAAACAGCCTGTGGGTCTTGTGGATTCTGCTTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp GAGCCAGTGCTGAGCCAGGACAGTCAGGATACCCTCTaGACTCGCAAACTCCCTTGGTGTCCAATAGCAGTT +
Preference number: 3 (lower is better)
Translates to: EPVLSQDSQDTL*TRKLPWCPIAV
Trigger: AACTGCTATTGGACACCAAGGGAGTTTGCGAGTGCAGAGGGTATCCTGACTGTCCTGGCTCAGCACTGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp TTGACATTCATGATTGGGAGTCCCATTCCCACACTGTaGCAGGGCTGGAATGTGGAGCCAATAGCAGGGGCC +
Preference number: 3 (lower is better)
Translates to: LTFMIGSPIPTL*QGWNVEPIAGA
Trigger: GGCCCCTGCTATTGGCTCCACATTCCAGCCCTGCCACAGTGTGGGAATGGGACTCCCAATCATGAATGTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp TCGGCTGGAGAGCCAGAATGGGCAGCACCTGTTCCCATCCAAAGCCTTTCACCTCCAGGACACAGGGGATaGGTTCACTTGGAGAAAAAC +
Preference number: 3 (lower is better)
Translates to: SAGEPEWAAPVPIQSLSPPGHRG*VHLEKN
Trigger: GTTTTTCTCCAAGTGAACCAATCCCCTGTGTCCTGG...AGGTGAAAGGCTTTGGATGGGAACAGGTGCTGCCCATTCTGGCTCTCCAGCCGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp GGAAGCCGAATCAAGCTGGTAATTCTAGTAACAGGGTaGCTCCTCCTAGACCCCACCAAGGAGCACAGGGAC +
Preference number: 3 (lower is better)
Translates to: GSRIKLVILVTG*LLLDPTKEHRD
Trigger: GTCCCTGTGCTCCTTGGTGGGGTCTAGGAGGAGTCACCCTGTTACTAGAATTACCAGCTTGATTCGGCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp GGAGCCAGTTGGTTCTCTCCTTCTACTGTGAGGGCTTaGGGGATAGAGCTCAGGTCGATTGTTAGGCTCAAC +
Preference number: 3 (lower is better)
Translates to: GASWFSPSTVRA*GIELRSIVRLN
Trigger: GTTGAGCCTAACAATCGACCTGAGCTCTATCCCCCAAGCCCTCACAGTAGAAGGAGAGAACCAACTGGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp GAGGCTGTGGCTGCGTCCATGGGAGTAACCTTCATGTaGTTCACTTTGAACACAAACTCCGTGCCACCCATG +
Preference number: 3 (lower is better)
Translates to: EAVAASMGVTFM*FTLNTNSVPPM
Trigger: CATGGGTGGCACGGAGTTTGTGTTCAAAGTGAATCACATGAAGGTTACTCCCATGGACGCAGCCACAGCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR TCA 72 bp AGCTGCTCTGAATTTCCCAACTGGATCAGTCTCCTCTaGGGGTTAAGCAGCAGGCTGTACTCTGTAGCCACC +
Preference number: 3 (lower is better)
Translates to: SCSEFPNWISLL*GLSSRLYSVAT
Trigger: GGTGGCTACAGAGTACAGCCTGCTGCTTAACCCTCAGAGGAGACTGATCCAGTTGGGAAATTCAGAGCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp TCTGCCACACCACTCCCAGCCTGTGAGACTCTGACCTaGTTGCTTAGACAGGAAGATGGTTTGCAAAGAACC +
Preference number: 3 (lower is better)
Translates to: SATPLPACETLT*LLRQEDGLQRT
Trigger: GGTTCTTTGCAAACCATCTTCCTGTCTAAGCAAGCAGGTCAGAGTCTCACAGGCTGGGAGTGGTGTGGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp CCCATTCGGCCTCTCTCAGTCTCACACATGGGATGGTaGAAGATAGGACATGAACCTTCACTGGTGGCAGAT +
Preference number: 3 (lower is better)
Translates to: PIRPLSVSHMGW*KIGHEPSLVAD
Trigger: ATCTGCCACCAGTGAAGGTTCATGTCCTATCTTGCACCATCCCATGTGTGAGACTGAGAGAGGCCGAATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp TTGCCAACCATCCAGCCTCATGTTCTGCTACATCAGTaGCCTAAAGCCCAGTTGCAGCTGACCTGTGAGTTC +
Preference number: 3 (lower is better)
Translates to: LPTIQPHVLLHQ*PKAQLQLTCEF
Trigger: GAACTCACAGGTCAGCTGCAACTGGGCTTTAGGCCACTGATGTAGCAGAACATGAGGCTGGATGGTTGGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp CGCTTACCAGCAAGCGCCTCAGGAAGAAAAGAAGGCTaGCGCTATGCTTTGACATTCATGATTGGGAGTCCC +
Preference number: 3 (lower is better)
Translates to: RLPASASGRKEG*RYALTFMIGSP
Trigger: GGGACTCCCAATCATGAATGTCAAAGCATAGCGCCAGCCTTCTTTTCTTCCTGAGGCGCTTGCTGGTAAGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp AATGAGCTTCACAGATCTGCCTGCTCAGGTTTAAGTTaGCACGAGGTTCCGAAGAGTCACTGCTTCTCCGGG +
Preference number: 3 (lower is better)
Translates to: NELHRSACSGLS*HEVPKSHCFSG
Trigger: CCCGGAGAAGCAGTGACTCTTCGGAACCTCGTGCCAACTTAAACCTGAGCAGGCAGATCTGTGAAGCTCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp TCTCCCATTCGGCCTCTCTCAGTCTCACACATGGGATaGTGCAAGATAGGACATGAACCTTCACTGGTGGCA +
Preference number: 3 (lower is better)
Translates to: SPIRPLSVSHMG*CKIGHEPSLVA
Trigger: TGCCACCAGTGAAGGTTCATGTCCTATCTTGCACCATCCCATGTGTGAGACTGAGAGAGGCCGAATGGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp TCGGCTGGAGAGCCAGAATGGGCAGCACCTGTTCCCATCCAAAGCCTTTCACCTAGGGGATTGGTTCACTaGGAGAAAAACTCCACAGAT +
Preference number: 3 (lower is better)
Translates to: SAGEPEWAAPVPIQSLSPRGLVH*EKNSTD
Trigger: ATCTGTGGAGTTTTTCTCCAAGTGAACCAATCCCCT...AGGTGAAAGGCTTTGGATGGGAACAGGTGCTGCCCATTCTGGCTCTCCAGCCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp GCAACCAGGGAGAAACCATCTTTAGGGCAAGGTCTGTaGTTCTTCCACCTCCTTATACAGCCTGAAGCCAGG +
Preference number: 3 (lower is better)
Translates to: ATREKPSLGQGL*FFHLLIQPEAR
Trigger: CCTGGCTTCAGGCTGTATAAGGAGGTGGAAGAATCACAGACCTTGCCCTAAAGATGGTTTCTCCCTGGTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp CCCCATGGTTGTACAGCAAGCAAGCATTTCACCAGCTaGGCCTTCTTTCTGGGCCCCTTCATTCTCAGTTTG +
Preference number: 3 (lower is better)
Translates to: PHGCTASKHFTS*AFFLGPFILSL
Trigger: CAAACTGAGAATGAAGGGGCCCAGAAAGAAGGCTCAGCTGGTGAAATGCTTGCTTGCTGTACAACCATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp CAGCTGCCACCCCTAAACACACTCGCCCCAGCTCTCTaGAGACATAAAGTGCAATCACACCTCTATGAAGTT +
Preference number: 3 (lower is better)
Translates to: QLPPLNTLAPAL*RHKVQSHLYEV
Trigger: AACTTCATAGAGGTGTGATTGCACTTTATGTCTGCAGAGAGCTGGGGCGAGTGTGTTTAGGGGTGGCAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp TTCAGCAGGGCTTCAATCTCGTGGGACTGGATTTGTTaGCAGAACAGACCTGATAACGCAAGTCCACCCTTC +
Preference number: 3 (lower is better)
Translates to: FSRASISWDWIC*QNRPDNASPPF
Trigger: GAAGGGTGGACTTGCGTTATCAGGTCTGTTCTGGCAACAAATCCAGTCCCACGAGATTGAAGCCCTGCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp AGCAAGCGCCTCAGGAAGAAAAGAAGGCTGGCGCTATaGTTTGACATTCATGATTGGGAGTCCCATTCCCAC +
Preference number: 3 (lower is better)
Translates to: SKRLRKKRRLAL*FDIHDWESHSH
Trigger: GTGGGAATGGGACTCCCAATCATGAATGTCAAAGCATAGCGCCAGCCTTCTTTTCTTCCTGAGGCGCTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp GAGGAGGCTGGGCACAGATGTGTGAGTACACACTGCTaGTATGTAGTTTTCCGTCAACTTGGTCTACAGGGT +
Preference number: 3 (lower is better)
Translates to: EEAGHRCVSTHC*YVVFRQLGLQG
Trigger: ACCCTGTAGACCAAGTTGACGGAAAACTACATAGCAGCAGTGTGTACTCACACATCTGTGCCCAGCCTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp CGCTGCACTGGGTTCCAGTGTCGAAAACCTCGAGTGTaGAAGGGATTTGGAGAGATAAAGAGAAGCAATGGC +
Preference number: 3 (lower is better)
Translates to: RCTGFQCRKPRV*KGFGEIKRSNG
Trigger: GCCATTGCTTCTCTTTATCTCTCCAAATCCCTTCCACACTCGAGGTTTTCGACACTGGAACCCAGTGCAGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp AGTATTGACTTGTCATGTCTGACCCTCAAGTCTGGATaGCCTCGAGCTCCACTGTGGCTTCAAGGTCACACA +
Preference number: 3 (lower is better)
Translates to: SIDLSCLTLKSG*PRAPLWLQGHT
Trigger: TGTGTGACCTTGAAGCCACAGTGGAGCTCGAGGCCATCCAGACTTGAGGGTCAGACATGACAAGTCAATACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp AAAAGAAGGCTGGCGCTATGCTTTGACATTCATGATTaGGAGTCCCATTCCCACACTGTGGCAGGGCTGGAA +
Preference number: 3 (lower is better)
Translates to: KRRLALCFDIHD*ESHSHTVAGLE
Trigger: TTCCAGCCCTGCCACAGTGTGGGAATGGGACTCCCAATCATGAATGTCAAAGCATAGCGCCAGCCTTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp GCAACCCTGGTTGTGGCTCTTTATGTTGGGCACTGCTaGATTGCCCCATGTCTGAGAAAATGGACCCTTTGT +
Preference number: 3 (lower is better)
Translates to: ATLVVALYVGHC*IAPCLRKWTLC
Trigger: ACAAAGGGTCCATTTTCTCAGACATGGGGCAATTCAGCAGTGCCCAACATAAAGAGCCACAACCAGGGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp TGGGCTGGTGGCCCTGGGTTCTATAAGAAAGCAGGCTaGGCAAACAAGGAGGAACAAGATAATGAGCAGCAT +
Preference number: 3 (lower is better)
Translates to: WAGGPGFYKKAG*ANKEEQDNEQH
Trigger: ATGCTGCTCATTATCTTGTTCCTCCTTGTTTGCTCAGCCTGCTTTCTTATAGAACCCAGGGCCACCAGCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp GCACTGCTCCTCCCCGCCCCCAGAAACAGACATCACTaGAAGAGGTTTAGCATCTCCTTGTTTGTAACTGAT +
Preference number: 3 (lower is better)
Translates to: ALLLPAPRNRHH*KRFSISLFVTD
Trigger: ATCAGTTACAAACAAGGAGATGCTAAACCTCTTTCAGTGATGTCTGTTTCTGGGGGCGGGGAGGAGCAGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp AGGAATGCCAGCAACCCTGGTTGTGGCTCTTTATGTTaGGCACTGCTGAATTGCCCCATGTCTGAGAAAATG +
Preference number: 3 (lower is better)
Translates to: RNASNPGCGSLC*ALLNCPMSEKM
Trigger: CATTTTCTCAGACATGGGGCAATTCAGCAGTGCCCAACATAAAGAGCCACAACCAGGGTTGCTGGCATTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp GAGACCAGAAACAGAGAACAGACATGGGTTGCTTTGTaGAAGAGAATCCACTCGCTAGGACGTCTACCTGCA +
Preference number: 3 (lower is better)
Translates to: ETRNREQTWVAL*KRIHSLGRLPA
Trigger: TGCAGGTAGACGTCCTAGCGAGTGGATTCTCTTTCACAAAGCAACCCATGTCTGTTCTCTGTTTCTGGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp TTCAGATCAACAGGCTTGGCGGCAAGATCATTATACTaGGCCATCTTGCTGGCCCATCAAGCTAAATGCACC +
Preference number: 3 (lower is better)
Translates to: FRSTGLAARSLY*AILLAHQAKCT
Trigger: GGTGCATTTAGCTTGATGGGCCAGCAAGATGGCTCAGTATAATGATCTTGCCGCCAAGCCTGTTGATCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp CCTGGTTGTGGCTCTTTATGTTGGGCACTGCTGAATTaGCCCATGTCTGAGAAAATGGACCCTTTGTTCTGT +
Preference number: 3 (lower is better)
Translates to: PGCGSLCWALLN*PMSEKMDPLFC
Trigger: ACAGAACAAAGGGTCCATTTTCTCAGACATGGGGCAATTCAGCAGTGCCCAACATAAAGAGCCACAACCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp ACTGTCTTAAAAGTAGGCAGGTGTTGGAGGATAGACTaGTGTACTCCTCTTGCAGAGGAGCAGAGTTTGGCT +
Preference number: 3 (lower is better)
Translates to: TVLKVGRCWRID*CTPLAEEQSLA
Trigger: AGCCAAACTCTGCTCCTCTGCAAGAGGAGTACACCAGTCTATCCTCCAACACCTGCCTACTTTTAAGACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp GATGCTGTTTTCAGCAGGGCTTCAATCTCGTGGGACTaGATTTGTTGCCAGAACAGACCTGATAACGCAAGT +
Preference number: 3 (lower is better)
Translates to: DAVFSRASISWD*ICCQNRPDNAS
Trigger: ACTTGCGTTATCAGGTCTGTTCTGGCAACAAATCCAGTCCCACGAGATTGAAGCCCTGCTGAAAACAGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp CGGAATGATGCTGTTTTCAGCAGGGCTTCAATCTCGTaGGACTGGATTTGTTGCCAGAACAGACCTGATAAC +
Preference number: 3 (lower is better)
Translates to: RNDAVFSRASIS*DWICCQNRPDN
Trigger: GTTATCAGGTCTGTTCTGGCAACAAATCCAGTCCCACGAGATTGAAGCCCTGCTGAAAACAGCATCATTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp TGTGGTGACTGGAGAGGAGACTCCATGAGTTTTCTTTaGAGATTGATGGGCGGGGGCAGTTTGAACTCTTTA +
Preference number: 3 (lower is better)
Translates to: CGDWRGDSMSFL*RLMGGGSLNSL
Trigger: TAAAGAGTTCAAACTGCCCCCGCCCATCAATCTCCAAAGAAAACTCATGGAGTCTCCTCTCCAGTCACCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp ATCGATCCCAATGGCTCCAAGAGGAACTTTTTAAAGAGGACATTGTGTGTGATGTTCTACTGTGAGGGCTaGGGGGATAGAGCTCAGGTC +
Preference number: 3 (lower is better)
Translates to: IDPNGSKRNFLKRTLCVMFYCEG*GDRAQV
Trigger: GACCTGAGCTCTATCCCCCAAGCCCTCACAGTAGAA...CATCACACACAATGTCCTCTTTAAAAAGTTCCTCTTGGAGCCATTGGGATCGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGACTCCACAGATCTCCTaGTCAGTTGTGTGGCACTTA +
Preference number: 3 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGTPQIS*SVVWHL
Trigger: TAAGTGCCACACAACTGACAAGGAGATCTGTGGAGT...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp TTCTGCTACATCAGTGGCCTAAAGCCCAGTTGCAGCTaGCCTGTGAGTTCTGCAAGAATCTTCCATGATGTA +
Preference number: 3 (lower is better)
Translates to: FCYISGLKPSCS*PVSSARIFHDV
Trigger: TACATCATGGAAGATTCTTGCAGAACTCACAGGTCAGCTGCAACTGGGCTTTAGGCCACTGATGTAGCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp AAGTATGTTCAGAGGCCTAAACAGAGTGCAGAATCATaGACCTGCAGCAAACTACCCAGGTGCTCTGATACC +
Preference number: 3 (lower is better)
Translates to: KYVQRPKQSAES*TCSKLPRCSDT
Trigger: GGTATCAGAGCACCTGGGTAGTTTGCTGCAGGTTCATGATTCTGCACTCTGTTTAGGCCTCTGAACATACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp TTGATGTTCCCTTATCACTACTCAGAGACAACCCTGTaGAGACAAGCCAGCATGCTCACCCTCTTTGATCTC +
Preference number: 3 (lower is better)
Translates to: LMFPYHYSETTL*RQASMLTLFDL
Trigger: GAGATCAAAGAGGGTGAGCATGCTGGCTTGTCTTCACAGGGTTGTCTCTGAGTAGTGATAAGGGAACATCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp TGTTCTTTCTGCAGACATAGCCTTGTGGGAGCTGTTTaGACCCGTAAAAGCTCAGGTGTCTATGTAAAGCCT +
Preference number: 3 (lower is better)
Translates to: CSFCRHSLVGAV*TRKSSGVYVKP
Trigger: AGGCTTTACATAGACACCTGAGCTTTTACGGGTCCAAACAGCTCCCACAAGGCTATGTCTGCAGAAAGAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp ACAAGGAGGAACAAGATAATGAGCAGCATCCTTCCTTaGCTTTCCAATCAATTCCTGCTTCCAGGTTCCTGC +
Preference number: 3 (lower is better)
Translates to: TRRNKIMSSILP*LSNQFLLPGSC
Trigger: GCAGGAACCTGGAAGCAGGAATTGATTGGAAAGCCAAGGAAGGATGCTGCTCATTATCTTGTTCCTCCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp ATGCAGGTCCTAGGATCAAATTCAGATCAACAGGCTTaGCGGCAAGATCATTATACTGAGCCATCTTGCTGG +
Preference number: 3 (lower is better)
Translates to: MQVLGSNSDQQA*RQDHYTEPSCW
Trigger: CCAGCAAGATGGCTCAGTATAATGATCTTGCCGCCAAGCCTGTTGATCTGAATTTGATCCTAGGACCTGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp CTCTCTCTCTCAACTTGTGAGTCCATAGGTGTCTCCTaGGGAAATCCCATTGAAAAGTATGTTCAGAGGCCT +
Preference number: 3 (lower is better)
Translates to: LSLSTCESIGVS*GNPIEKYVQRP
Trigger: AGGCCTCTGAACATACTTTTCAATGGGATTTCCCCAGGAGACACCTATGGACTCACAAGTTGAGAGAGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp AGGGAAATCGAAAGAACAACGAAAGCATCTCAGTATTaGCTTGTCATGTCTGACCCTCAAGTCTGGATGGCC +
Preference number: 3 (lower is better)
Translates to: REIERTTKASQY*LVMSDPQVWMA
Trigger: GGCCATCCAGACTTGAGGGTCAGACATGACAAGTCAATACTGAGATGCTTTCGTTGTTCTTTCGATTTCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp CACAACAAAACATTGCATGGTCTTTGTGCAGTGGCATaGAAATCGTGCATTCGGGCTAAGTTGGGAGAGATG +
Preference number: 3 (lower is better)
Translates to: HNKTLHGLCAVA*KSCIRAKLGEM
Trigger: CATCTCTCCCAACTTAGCCCGAATGCACGATTTTCATGCCACTGCACAAAGACCATGCAATGTTTTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp TCCTCTCCATTTTCCACTGCGATAGTACCTGATGCCTaGCTAGATTCCTTCTTGGTTTCTGAGTCTCAGTGT +
Preference number: 3 (lower is better)
Translates to: SSPFSTAIVPDA*LDSFLVSESQC
Trigger: ACACTGAGACTCAGAAACCAAGAAGGAATCTAGTCAGGCATCAGGTACTATCGCAGTGGAAAATGGAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp TCAGGGGCAGGAAGGATTGCTGGGTTTAAACAGGGCTaGTCATATGCCCTACCTATTTATGCTGAAAATGCA +
Preference number: 3 (lower is better)
Translates to: SGAGRIAGFKQG*SYALPIYAENA
Trigger: TGCATTTTCAGCATAAATAGGTAGGGCATATGATCAGCCCTGTTTAAACCCAGCAATCCTTCCTGCCCCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp GTAAGTAGAGACCAGAAACAGAGAACAGACATGGGTTaGTTTGTGAAAGAGAATCCACTCGCTAGGACGTCT +
Preference number: 3 (lower is better)
Translates to: VSRDQKQRTDMG*FVKENPLARTS
Trigger: AGACGTCCTAGCGAGTGGATTCTCTTTCACAAAGCAACCCATGTCTGTTCTCTGTTTCTGGTCTCTACTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp AGTCTCAGTGTCATGTATCTCAAATCTTGTAGGGATGGAAGGCAGTATTCACAAGCAGAGTTTGGCTCTTaGTACCAATACTGGGTGGCT +
Preference number: 3 (lower is better)
Translates to: SLSVMYLKSCRDGRQYSQAEFGS*YQYWVA
Trigger: AGCCACCCAGTATTGGTACAAAGAGCCAAACTCTGC...TTGTGAATACTGCCTTCCATCCCTACAAGATTTGAGATACATGACACTGAGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp ATCGATCCCAATGGCTCCAAGAGGAACTTTTTAAAGAGGACATTGTGTGTGATGCCCTCAGATGTAGAGTaGACTAGCAGAATTACCCAC +
Preference number: 3 (lower is better)
Translates to: IDPNGSKRNFLKRTLCVMPSDVE*TSRITH
Trigger: GTGGGTAATTCTGCTAGTCAACTCTACATCTGAGGG...CATCACACACAATGTCCTCTTTAAAAAGTTCCTCTTGGAGCCATTGGGATCGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp CTCAAAGTATTAAGAAATGAGCTTCACAGATCTGCCTaGTCAGGTTTAAGTTGGCACGAGGTTCCGAAGAGT +
Preference number: 3 (lower is better)
Translates to: LKVLRNELHRSA*SGLSWHEVPKS
Trigger: ACTCTTCGGAACCTCGTGCCAACTTAAACCTGAGCAGGCAGATCTGTGAAGCTCATTTCTTAATACTTTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp ATGTCTGAGAAAATGGACCCTTTGTTCTGTGGTGACTaGAGAGGAGACTCCATGAGTTTTCTTTGGAGATTG +
Preference number: 3 (lower is better)
Translates to: MSEKMDPLFCGD*RGDSMSFLWRL
Trigger: CAATCTCCAAAGAAAACTCATGGAGTCTCCTCTCCAGTCACCACAGAACAAAGGGTCCATTTTCTCAGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp GTATTCACAACAAAACATTGCATGGTCTTTGTGCAGTaGCATGAAAATCGTGCATTCGGGCTAAGTTGGGAG +
Preference number: 3 (lower is better)
Translates to: VFTTKHCMVFVQ*HENRAFGLSWE
Trigger: CTCCCAACTTAGCCCGAATGCACGATTTTCATGCCACTGCACAAAGACCATGCAATGTTTTGTTGTGAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp CATATATGCAGCATATTGTTAAAGGGTAGAGATAGATaGGTCCAGGTGGGTTGCAGTGAACCAAAGTGGCTA +
Preference number: 3 (lower is better)
Translates to: HICSILLKGRDR*VQVGCSEPKWL
Trigger: TAGCCACTTTGGTTCACTGCAACCCACCTGGACTCATCTATCTCTACCCTTTAACAATATGCTGCATATATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp TGTGGTTGCCTAGAATTTGCTATGGATATGGGAGTGTaGAAGGATAGACTCCCAGAAGGTTCTTTAGACAAT +
Preference number: 3 (lower is better)
Translates to: CGCLEFAMDMGV*KDRLPEGSLDN
Trigger: ATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCACACTCCCATATCCATAGCAAATTCTAGGCAACCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp CTCTTTCCATTAGTAAGCTACTGGAGCACTGATGTTTaGTTTCTGTGTGTTAAAGATGGCAGAGTGGATGTG +
Preference number: 3 (lower is better)
Translates to: LFPLVSYWSTDV*FLCVKDGRVDV
Trigger: CACATCCACTCTGCCATCTTTAACACACAGAAACCAAACATCAGTGCTCCAGTAGCTTACTAATGGAAAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp GAGTCTCACCCCAACCTCTTTCCATTAGTAAGCTACTaGAGCACTGATGTTTGGTTTCTGTGTGTTAAAGAT +
Preference number: 3 (lower is better)
Translates to: ESHPNLFPLVSY*STDVWFLCVKD
Trigger: ATCTTTAACACACAGAAACCAAACATCAGTGCTCCAGTAGCTTACTAATGGAAAGAGGTTGGGGTGAGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp ATCGATCCCAATGGCTCCAAGAGGAACTTTTTAAAGAGGACATTGTGTGTGATGAACATTGCATGGTCTTaGTGCAGTGGCATGAAAATC +
Preference number: 3 (lower is better)
Translates to: IDPNGSKRNFLKRTLCVMNIAWS*CSGMKI
Trigger: GATTTTCATGCCACTGCACAAAGACCATGCAATGTT...CATCACACACAATGTCCTCTTTAAAAAGTTCCTCTTGGAGCCATTGGGATCGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR-3UTR CAA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGGTGAACCCTGTGTCATaGATTTTAAAATACGCATTG +
Preference number: 3 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGVNPVS*ILKYAL
Trigger: CAATGCGTATTTTAAAATCAATGACACAGGGTTCAC...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp CATCCCTCCGTGATTGTTTGGTGTATTTATTTAGACTaGATGAGAAAAAGTCTGCAGCAGCTCCCTATTGGT +
Preference number: 3 (lower is better)
Translates to: HPSVIVWCIYLD*MRKSLQQLPIG
Trigger: ACCAATAGGGAGCTGCTGCAGACTTTTTCTCATTCAGTCTAAATAAATACACCAAACAATCACGGAGGGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp TGGAAACATATACCAGGATTCACAGAGAGCCTTAATTaGTGTTCCCTTATCACTACTCAGAGACAACCCTGT +
Preference number: 3 (lower is better)
Translates to: WKHIPGFTESLN*CSLITTQRQPC
Trigger: ACAGGGTTGTCTCTGAGTAGTGATAAGGGAACATCAATTAAGGCTCTCTGTGAATCCTGGTATATGTTTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp CCATTTAGTTCCAGGCTAATAAGGAAACATTGTGGTTaGCTAGAATTTGCTATGGATATGGGAGTGTGCAAG +
Preference number: 3 (lower is better)
Translates to: PFSSRLIRKHCG*LEFAMDMGVCK
Trigger: CTTGCACACTCCCATATCCATAGCAAATTCTAGGCAACCACAATGTTTCCTTATTAGCCTGGAACTAAATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR TCA 72 bp CAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTaGAGGAAAGTCATACACGGTAAAGAGTCTTGGTTC +
Preference number: 3 (lower is better)
Translates to: QVHQKNQCPFSV*RKVIHGKESWF
Trigger: GAACCAAGACTCTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CCA 72 bp CCAAGACATCTCAATTTGTTCTTACAATCCAGGATCTaGCTCATGATGCTGAATAACTCGGGCTTTATACAT +
Preference number: 3 (lower is better)
Translates to: PRHLNLFLQSRI*LMMLNNSGFIH
Trigger: ATGTATAAAGCCCGAGTTATTCAGCATCATGAGCCAGATCCTGGATTGTAAGAACAAATTGAGATGTCTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp AAGCCAAGTAAACTCTTTCCTCCCCAACTTGGATTTTaGCCATATTGTTTCATAACAGCAATAGAAACTGCA +
Preference number: 3 (lower is better)
Translates to: KPSKLFPPQLGF*PYCFITAIETA
Trigger: TGCAGTTTCTATTGCTGTTATGAAACAATATGGCCAAAATCCAAGTTGGGGAGGAAAGAGTTTACTTGGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CCA 72 bp CTTGATAGGCATCAGTGGATTTATTTTTCCTGCTTCTaGGGATTGAATCCAGAAGAATTTCATACTTGTTGG +
Preference number: 3 (lower is better)
Translates to: LDRHQWIYFSCF*GLNPEEFHTCW
Trigger: CCAACAAGTATGAAATTCTTCTGGATTCAATCCCCAGAAGCAGGAAAAATAAATCCACTGATGCCTATCAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR GCA 72 bp TCAGAAAGTGATCACACAAACTTCACAGACTCATCCTaGTTACACTATGTTAATATCTATCATCCCTTTGTG +
Preference number: 3 (lower is better)
Translates to: SESDHTNFTDSS*LHYVNIYHPFV
Trigger: CACAAAGGGATGATAGATATTAACATAGTGTAAGCAGGATGAGTCTGTGAAGTTTGTGTGATCACTTTCTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GACCTCGGGGCGTACCTCGCAGCGCTGGCTCACCCATTCCCCGTGGAGGCCAATCATGGTTGTGGTTCATaGAACAGGAGGGCTGGGAAC +
Preference number: 4 (lower is better)
Translates to: DLGAYLAALAHPFPVEANHGCGS*NRRAGN
Trigger: GTTCCCAGCCCTCCTGTTGCATGAACCACAACCATG...ATTGGCCTCCACGGGGAATGGGTGAGCCAGCGCTGCGAGGTACGCCCCGAGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
CDS-3UTR GCA 90 bp GAAGAGGTGGGGAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCCCCTCTCCCAGCCCATaGAACAGGAGGGCTGGGAAC +
Preference number: 4 (lower is better)
Translates to: EEVGRGEATAGLKAFKCIPSPSP*NRRAGN
Trigger: GTTCCCAGCCCTCCTGTTGCATGGGCTGGGAGAGGG...GATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTCCCCACCTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp TCGGCTGGAGAGCCAGAATGGGCAGCACCTGTTCCCATCCAAAGCCTTTCACCTAGCTCCTCCACCAGGTaGTCCAGGCTGTGGTGGGGA +
Preference number: 4 (lower is better)
Translates to: SAGEPEWAAPVPIQSLSPSSSTR*SRLWWG
Trigger: TCCCCACCACAGCCTGGACCACCTGGTGGAGGAGCT...AGGTGAAAGGCTTTGGATGGGAACAGGTGCTGCCCATTCTGGCTCTCCAGCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp TTGCTGCCACGACCAAGCAGCAGAAGACCCTCGTCAGATGCAGCTGCTGGAGTGCTTCTCTGGTCTGTCTaGGCTGGAGCCATCGCTGGG +
Preference number: 4 (lower is better)
Translates to: LLPRPSSRRPSSDAAAGVLLWSV*AGAIAG
Trigger: CCCAGCGATGGCTCCAGCCCAGACAGACCAGAGAAG...CACTCCAGCAGCTGCATCTGACGAGGGTCTTCTGCTGCTTGGTCGTGGCAGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp CAGAGCCACGCAGCCATTGGTATGTGTCACATCCTGTaGGATACCCACCTGCCAGGAGCCCTCAGCCCCACA +
Preference number: 4 (lower is better)
Translates to: QSHAAIGMCHIL*DTHLPGALSPT
Trigger: TGTGGGGCTGAGGGCTCCTGGCAGGTGGGTATCCAACAGGATGTGACACATACCAATGGCTGCGTGGCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR CAA 72 bp TCCACCCTTCATGCTCGCCTCACGTTCACTTGGGGCTaGCTGCCACGACCAAGCAGCAGAAGACCCTCGTCA +
Preference number: 4 (lower is better)
Translates to: STLHARLTFTWG*LPRPSSRRPSS
Trigger: TGACGAGGGTCTTCTGCTGCTTGGTCGTGGCAGCAAGCCCCAAGTGAACGTGAGGCGAGCATGAAGGGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGCTTGCTGCCACGACCAAGCAGCAGAAGACCCTCGTCAGATGCAGCTGCTGGATTACTTCACAGCCTGTaGACACCCAGTGGCCCTCGA +
Preference number: 4 (lower is better)
Translates to: GLLPRPSSRRPSSDAAAGLLHSL*TPSGPR
Trigger: TCGAGGGCCACTGGGTGTCCACAGGCTGTGAAGTAA...TCCAGCAGCTGCATCTGACGAGGGTCTTCTGCTGCTTGGTCGTGGCAGCAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp TTGCTGCCACGACCAAGCAGCAGAAGACCCTCGTCAGATGCAGCTGCTGGAGTGCTCTTCAGCTCTTGGTaGGGAAGAGGCACACTGGAC +
Preference number: 4 (lower is better)
Translates to: LLPRPSSRRPSSDAAAGVLFSSW*GRGTLD
Trigger: GTCCAGTGTGCCTCTTCCTCACCAAGAGCTGAAGAG...CACTCCAGCAGCTGCATCTGACGAGGGTCTTCTGCTGCTTGGTCGTGGCAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCGGGGCGGCTGGTAACTaGACGGCCGGTAGAACACCC +
Preference number: 4 (lower is better)
Translates to: AGRHSKLKLQTHCSWRRGGAAGN*TAGRTP
Trigger: GGGTGTTCTACCGGCCGTCCAGTTACCAGCCGCCCC...GCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GAAGAGGTGGGGAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCCTCGAGCGTAGATGGTaGATGTGGGGTGCTTGCAGA +
Preference number: 4 (lower is better)
Translates to: EEVGRGEATAGLKAFKCILERRW*MWGACR
Trigger: TCTGCAAGCACCCCACATTCACCATCTACGCTCGAG...GATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTCCCCACCTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GAAGAGGTGGGGAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCTCCACACGGATGAGCTaGAGCTCGTGCATGGCAAAG +
Preference number: 4 (lower is better)
Translates to: EEVGRGEATAGLKAFKCISTRMS*SSCMAK
Trigger: CTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGA...GATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTCCCCACCTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GAAGAGGTGGGGAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCTCCTCCCTGCTGCCCTaGCATACAGATGACCTTGAC +
Preference number: 4 (lower is better)
Translates to: EEVGRGEATAGLKAFKCISSLLP*HTDDLD
Trigger: GTCAAGGTCATCTGTATGGCAGGGCAGCAGGGAGGA...GATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTCCCCACCTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGTATGTGTCACATCCTGTTGGATACCCACCTGCCAGGAGCCCTCAGCCCCACAATGCAACAGGAGGGCTaGGAACAGGTATCCAAGCAG +
Preference number: 4 (lower is better)
Translates to: GMCHILLDTHLPGALSPTMQQEG*EQVSKQ
Trigger: CTGCTTGGATACCTGTTCCCAGCCCTCCTGTTGCAT...TGTGGGGCTGAGGGCTCCTGGCAGGTGGGTATCCAACAGGATGTGACACATACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
CDS-3UTR CCA 90 bp GATCTGATCATATCCCAGTGGTGGAGAAGTCAGAGGCCACAGCCTCCCGTATGGAGGTGGTCCAGGCTGTaGTGGGGATACTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: DLIISQWWRSQRPQPPVWRWSRL*WGYCFS
Trigger: GGAGAAGCAGTATCCCCACCACAGCCTGGACCACCT...CCATACGGGAGGCTGTGGCCTCTGACTTCTCCACCACTGGGATATGATCAGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCAGCTCCTCCACCAGGTaGTCCAGGCTGTGGTGGGGA +
Preference number: 4 (lower is better)
Translates to: AGRHSKLKLQTHCSWRRGSSSTR*SRLWWG
Trigger: TCCCCACCACAGCCTGGACCACCTGGTGGAGGAGCT...GCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp AAAACTTTAGTTATTGAGGAGGGAAGGCCTGGCCCATaGTGGGTGGCTTCATCCCTGGGCTGGTGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: KTLVIEEGRPGP*WVASSLGWWPW
Trigger: CCAGGGCCACCAGCCCAGGGATGAAGCCACCCACAATGGGCCAGGCCTTCCCTCCTCAATAACTAAAGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp ATGGGTCTAGTGGAAGGCGCAGTTTCTGTGTCTGTGTaGTTCCCTCGGAGAGAGCTCGCTCAGGGGCAGGAA +
Preference number: 4 (lower is better)
Translates to: MGLVEGAVSVSV*FPRRELAQGQE
Trigger: TTCCTGCCCCTGAGCGAGCTCTCTCCGAGGGAACAACACAGACACAGAAACTGCGCCTTCCACTAGACCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp AAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGTGGGGGATCTGCTGTCTGGATaGAGGAGGGCAGAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: KAETSNTLLMAQRLEEVGDLLSG*RRAEPS
Trigger: AGAGGGCTCTGCCCTCCTTCATCCAGACAGCAGATC...CCCCACCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp CATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGCCCTCTCCCAGCCCATaGAACAGGAGGGCTGGGAAC +
Preference number: 4 (lower is better)
Translates to: HSKLKLQTHCSWRRGWKRPSPSP*NRRAGN
Trigger: GTTCCCAGCCCTCCTGTTGCATGGGCTGGGAGAGGG...CCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GATCTGATCATATCCCAGTGGTGGAGAAGTCAGAGGCCACAGCCTCCCGTATGGTCCTCCCTGCTGCCCTaGCATACAGATGACCTTGAC +
Preference number: 4 (lower is better)
Translates to: DLIISQWWRSQRPQPPVWSSLLP*HTDDLD
Trigger: GTCAAGGTCATCTGTATGGCAGGGCAGCAGGGAGGA...CCATACGGGAGGCTGTGGCCTCTGACTTCTCCACCACTGGGATATGATCAGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GGCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCCCAGCTGTCCTCCCTaGTGCCCTGCCATACAGATG +
Preference number: 4 (lower is better)
Translates to: GGKTFKAETSNTLLMAQRPSCPP*CPAIQM
Trigger: CATCTGTATGGCAGGGCAGCAGGGAGGACAGCTGGG...CCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GAAGAGGTGGGGAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCATGCAACAGGAGGGCTaGGAACAGGTATCCAAGCAG +
Preference number: 4 (lower is better)
Translates to: EEVGRGEATAGLKAFKCIMQQEG*EQVSKQ
Trigger: CTGCTTGGATACCTGTTCCCAGCCCTCCTGTTGCAT...GATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTCCCCACCTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTCCTGTGGACACCCAGTaGCCCTCGATGGTCGGGGGC +
Preference number: 4 (lower is better)
Translates to: RGNGRSQGIQVHQKNQCPPVDTQ*PSMVGG
Trigger: GCCCCCGACCATCGAGGGCCACTGGGTGTCCACAGG...AGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATCCTGTGGACACCCAGTaGCCCTCGATGGTCGGGGGC +
Preference number: 4 (lower is better)
Translates to: RGEATAGLKAFKCIKRINPVDTQ*PSMVGG
Trigger: GCCCCCGACCATCGAGGGCCACTGGGTGTCCACAGG...ATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCGCGACTGCCTCTGTGTaGCAGATGACTTGGACGCCG +
Preference number: 4 (lower is better)
Translates to: AGRHSKLKLQTHCSWRRGATASV*QMTWTP
Trigger: CGGCGTCCAAGTCATCTGCCACACAGAGGCAGTCGC...GCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGTGGGGGCCTTGGTGCACTCGTaGTTACTCTCCTCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: KAETSNTLLMAQRLEEVGALVHS*LLSSCH
Trigger: GTGGCAGGAGGAGAGTAACCACGAGTGCACCAAGGC...CCCCACCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGAGCTCCTCCACCAGGTaGTCCAGGCTGTGGTGGGGA +
Preference number: 4 (lower is better)
Translates to: GKTFKAETSNTLLMAQRLSSSTR*SRLWWG
Trigger: TCCCCACCACAGCCTGGACCACCTGGTGGAGGAGCT...CAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GATGCAGCTGCTGGAGTGCAGGCATCGCAGTCTCCAGAACCACAAAGCAAAATATGGTCAGGTCAGCCTTaGGGGGCAGTATGGGAGGGT +
Preference number: 4 (lower is better)
Translates to: DAAAGVQASQSPEPQSKIWSGQP*GAVWEG
Trigger: ACCCTCCCATACTGCCCCCCAAGGCTGACCTGACCA...TATTTTGCTTTGTGGTTCTGGAGACTGCGATGCCTGCACTCCAGCAGCTGCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGTGGGGCTCACCCATTCCCCGTaGAGGCCAATGGTCAGGTCA +
Preference number: 4 (lower is better)
Translates to: KAETSNTLLMAQRLEEVGLTHSP*RPMVRS
Trigger: TGACCTGACCATTGGCCTCCACGGGGAATGGGTGAG...CCCCACCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GAAGAGGTGGGGAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCTGTGTCACATCCTGTTaGATACCCACCTGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: EEVGRGEATAGLKAFKCICVTSC*IPTCQE
Trigger: CTCCTGGCAGGTGGGTATCCAACAGGATGTGACACA...GATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTCCCCACCTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp TTCCCTCGGAGAGAGCTCGCTCAGGGGCAGGAAGGATaGCTGGGTTTAAACAGGGCTGATCATATGCCCTAC +
Preference number: 4 (lower is better)
Translates to: FPRRELAQGQEG*LGLNRADHMPY
Trigger: GTAGGGCATATGATCAGCCCTGTTTAAACCCAGCAATCCTTCCTGCCCCTGAGCGAGCTCTCTCCGAGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCGGGGCATCTGCACTGTaGTCCGCGCACCGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: GEATAGLKAFKCIKRINVGASAL*SAHRCG
Trigger: TCCACAACGGTGCGCGGATCACAGTGCAGATGCCCC...GACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GGCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGTGTGAGGTAGTTTaGTGCCCAGAGCCACGCAGC +
Preference number: 4 (lower is better)
Translates to: GGKTFKAETSNTLLMAQRLCEVV*CPEPRS
Trigger: GCTGCGTGGCTCTGGGCATCAAACTACCTCACACAG...CCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAACCCTCTCCCAGCCCATaGAACAGGAGGGCTGGGAAC +
Preference number: 4 (lower is better)
Translates to: ERRGNGRSQGIQVHQKNQPSPSP*NRRAGN
Trigger: GTTCCCAGCCCTCCTGTTGCATGGGCTGGGAGAGGG...TTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATCCCAGTGGCCCTCGATaGTCGGGGGCATCTGCACTG +
Preference number: 4 (lower is better)
Translates to: RGEATAGLKAFKCIKRINPSGPR*SGASAL
Trigger: CAGTGCAGATGCCCCCGACCATCGAGGGCCACTGGG...ATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCCCCAGTGGCCCTCGATaGTCGGGGGCATCTGCACTG +
Preference number: 4 (lower is better)
Translates to: GNGRSQGIQVHQKNQCPFPSGPR*SGASAL
Trigger: CAGTGCAGATGCCCCCGACCATCGAGGGCCACTGGG...GAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGTGGGGGCTGCAGCTCGTGCATaGCAAAGTTCACAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: KAETSNTLLMAQRLEEVGAAARA*QSSQPW
Trigger: CCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGC...CCCCACCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGTGGTCAGGTCAGCCTTaGGGGGCAGTATGGGAGGGT +
Preference number: 4 (lower is better)
Translates to: GKTFKAETSNTLLMAQRLWSGQP*GAVWEG
Trigger: ACCCTCCCATACTGCCCCCCAAGGCTGACCTGACCA...CAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCCTGGTCTGTCTGGGCTaGAGCCATCGCTGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: ERQRQVSRHSSASKESMSLVCLG*SHRWAS
Trigger: AGAGGCCCAGCGATGGCTCCAGCCCAGACAGACCAG...GGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTGGTCTGTCTGGGCTaGAGCCATCGCTGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: GEATAGLKAFKCIKRINVLVCLG*SHRWAS
Trigger: AGAGGCCCAGCGATGGCTCCAGCCCAGACAGACCAG...GACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp TGGCTCATGATGCTGAATAACTCGGGCTTTATACATTaGCCCACTGCACTGCTCCTCCCCGCCCCCAGAAAC +
Preference number: 4 (lower is better)
Translates to: WLMMLNNSGFIH*PTALLLPAPRN
Trigger: GTTTCTGGGGGCGGGGAGGAGCAGTGCAGTGGGCAAATGTATAAAGCCCGAGTTATTCAGCATCATGAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp CATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGCCTCTGTGTGGCAGATaGCTTGGACGCCGTGAAGCT +
Preference number: 4 (lower is better)
Translates to: HSKLKLQTHCSWRRGWKRPLCGR*LGRREA
Trigger: AGCTTCACGGCGTCCAAGTCATCTGCCACACAGAGG...CCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GGCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTCGAGCGTAGATGGTaGATGTGGGGTGCTTGCAGA +
Preference number: 4 (lower is better)
Translates to: GGKTFKAETSNTLLMAQRLERRW*MWGACR
Trigger: TCTGCAAGCACCCCACATTCACCATCTACGCTCGAG...CCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp AGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTGGGCCTCTGGCCATTaGACAGCAGGTAGCGGCCTC +
Preference number: 4 (lower is better)
Translates to: RGNGRSQGIQVHQKNQCPWASGH*TAGSGL
Trigger: GAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCA...AGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp AAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGTGGGGGGAGAGTCCAAAGGCTaGCAAAGGCAGGAAGCAACA +
Preference number: 4 (lower is better)
Translates to: KAETSNTLLMAQRLEEVGGESKG*QRQEAT
Trigger: TGTTGCTTCCTGCCTTTGTCAGCCTTTGGACTCTCC...CCCCACCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGTGCGATCTGCTGTCTaGATGAAGGAGGGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: GKTFKAETSNTLLMAQRLVRSAV*MKEGRA
Trigger: GGCTCTGCCCTCCTTCATCCAGACAGCAGATCGCAC...CAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGCCCAGTGGCCCTCGATaGTCGGGGGCATCTGCACTG +
Preference number: 4 (lower is better)
Translates to: GRSQGIQVHQKNQCPFSVPSGPR*SGASAL
Trigger: CAGTGCAGATGCCCCCGACCATCGAGGGCCACTGGG...CACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTTACTTCACAGCCTGTaGACACCCAGTGGCCCTCGA +
Preference number: 4 (lower is better)
Translates to: AGRHSKLKLQTHCSWRRGLLHSL*TPSGPR
Trigger: TCGAGGGCCACTGGGTGTCCACAGGCTGTGAAGTAA...GCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp CAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCGGGGCGGCTGGTAACTaGACGGCCGGTAGAACACCC +
Preference number: 4 (lower is better)
Translates to: QRQVSRHSSASKESMSFLGAAGN*TAGRTP
Trigger: GGGTGTTCTACCGGCCGTCCAGTTACCAGCCGCCCC...GAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp CAACCCTGTGAAGACAAGCCAGCATGCTCACCCTCTTaGATCTCCCATTCGGCCTCTCTCAGTCTCACACAT +
Preference number: 4 (lower is better)
Translates to: QPCEDKPACSPS*ISHSASLSLTH
Trigger: ATGTGTGAGACTGAGAGAGGCCGAATGGGAGATCAAAGAGGGTGAGCATGCTGGCTTGTCTTCACAGGGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp CGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGGGGCATCTGCACTGTaGTCCGCGCACCGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: RQVSRHSSASKESMSFLCGASAL*SAHRCG
Trigger: TCCACAACGGTGCGCGGATCACAGTGCAGATGCCCC...ACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp CGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTTGGGCCTCTGGCCATTaGACAGCAGGTAGCGGCCTC +
Preference number: 4 (lower is better)
Translates to: RQVSRHSSASKESMSFLCWASGH*TAGSGL
Trigger: GAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCA...ACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp CATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGCTCTTCAGCTCTTGGTaGGGAAGAGGCACACTGGAC +
Preference number: 4 (lower is better)
Translates to: HSKLKLQTHCSWRRGWKRLFSSW*GRGTLD
Trigger: GTCCAGTGTGCCTCTTCCTCACCAAGAGCTGAAGAG...CCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCACCGAGGGTGCGATCTaGTGTCTGGATGAAGGAGGG +
Preference number: 4 (lower is better)
Translates to: ERQRQVSRHSSASKESMSTEGAI*CLDEGG
Trigger: CCCTCCTTCATCCAGACAGCAGATCGCACCCTCGGT...GGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp AGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTGTTGGATACCCACCTaGCAGGAGCCCTCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: RGNGRSQGIQVHQKNQCPCWIPT*QEPSAP
Trigger: TGGGGCTGAGGGCTCCTGGCAGGTGGGTATCCAACA...AGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCCCCAGCTGTCCTCCCTaGTGCCCTGCCATACAGATG +
Preference number: 4 (lower is better)
Translates to: GNGRSQGIQVHQKNQCPFPSCPP*CPAIQM
Trigger: CATCTGTATGGCAGGGCAGCAGGGAGGACAGCTGGG...GAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp AGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTCCCAGCTGTCCTCCCTaGTGCCCTGCCATACAGATG +
Preference number: 4 (lower is better)
Translates to: RGNGRSQGIQVHQKNQCPPSCPP*CPAIQM
Trigger: CATCTGTATGGCAGGGCAGCAGGGAGGACAGCTGGG...AGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCGCCTTGGTGCACTCGTaGTTACTCTCCTCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: GEATAGLKAFKCIKRINVALVHS*LLSSCH
Trigger: GTGGCAGGAGGAGAGTAACCACGAGTGCACCAAGGC...GACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGTGGGGATGCACGCATGGTTGTaGTTCTTGGCATTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: KAETSNTLLMAQRLEEVGMHAWL*FLAFCR
Trigger: CCTGCAGAATGCCAAGAACCACAACCATGCGTGCAT...CCCCACCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCCTTCTCTGGTCTGTCTaGGCTGGAGCCATCGCTGGG +
Preference number: 4 (lower is better)
Translates to: GNGRSQGIQVHQKNQCPFLLWSV*AGAIAG
Trigger: CCCAGCGATGGCTCCAGCCCAGACAGACCAGAGAAG...GAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAAGACACTGTGACTCCTTaGAAGCCCTCCAGGCGCTTT +
Preference number: 4 (lower is better)
Translates to: ERRGNGRSQGIQVHQKNQDTVTP*KPSRRF
Trigger: AAAGCGCCTGGAGGGCTTTCAAGGAGTCACAGTGTC...TTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCGACACTGTGACTCCTTaGAAGCCCTCCAGGCGCTTT +
Preference number: 4 (lower is better)
Translates to: ERQRQVSRHSSASKESMSDTVTP*KPSRRF
Trigger: AAAGCGCCTGGAGGGCTTTCAAGGAGTCACAGTGTC...GGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCCTGTGTGAGGTAGTTTaGTGCCCAGAGCCACGCAGC +
Preference number: 4 (lower is better)
Translates to: GNGRSQGIQVHQKNQCPFLCEVV*CPEPRS
Trigger: GCTGCGTGGCTCTGGGCATCAAACTACCTCACACAG...GAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCACCGAGGGTGCGATCTaGTGTCTGGATGAAGGAGGG +
Preference number: 4 (lower is better)
Translates to: GNGRSQGIQVHQKNQCPFTEGAI*CLDEGG
Trigger: CCCTCCTTCATCCAGACAGCAGATCGCACCCTCGGT...GAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATCCTCCCTGCTGCCCTaGCATACAGATGACCTTGAC +
Preference number: 4 (lower is better)
Translates to: ERRGNGRSQGIQVHQKNQSSLLP*HTDDLD
Trigger: GTCAAGGTCATCTGTATGGCAGGGCAGCAGGGAGGA...TTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGCCTTGGTGCACTCGTaGTTACTCTCCTCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: RGEATAGLKAFKCIKRINALVHS*LLSSCH
Trigger: GTGGCAGGAGGAGAGTAACCACGAGTGCACCAAGGC...ATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCAGGTGGTCCAGGCTGTaGTGGGGATACTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: GNGRSQGIQVHQKNQCPFRWSRL*WGYCFS
Trigger: GGAGAAGCAGTATCCCCACCACAGCCTGGACCACCT...GAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTAGGTGGTCCAGGCTGTaGTGGGGATACTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: RGNGRSQGIQVHQKNQCPRWSRL*WGYCFS
Trigger: GGAGAAGCAGTATCCCCACCACAGCCTGGACCACCT...AGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp CAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGGTCAGGTCAGCCTTaGGGGGCAGTATGGGAGGGT +
Preference number: 4 (lower is better)
Translates to: QRQVSRHSSASKESMSFLWSGQP*GAVWEG
Trigger: ACCCTCCCATACTGCCCCCCAAGGCTGACCTGACCA...GAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp CTGGCCATTGAACAGCAGGTAGCGGCCTCGGGTGTCTaGCTCCATTTTGAAGATCTCATATTCTGTGTGAGG +
Preference number: 4 (lower is better)
Translates to: LAIEQQVAASGV*LHFEDLIFCVR
Trigger: CCTCACACAGAATATGAGATCTTCAAAATGGAGCAAGACACCCGAGGCCGCTACCTGCTGTTCAATGGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
3UTR CAA 72 bp AGCGCCTCAGGAAGAAAAGAAGGCTGGCGCTATGCTTaGACATTCATGATTGGGAGTCCCATTCCCACACTG +
Preference number: 4 (lower is better)
Translates to: SASGRKEGWRYA*TFMIGSPIPTL
Trigger: CAGTGTGGGAATGGGACTCCCAATCATGAATGTCAAAGCATAGCGCCAGCCTTCTTTTCTTCCTGAGGCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp CGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGATCTGCTGTCTGGATaGAGGAGGGCAGAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: RQVSRHSSASKESMSFLCDLLSG*RRAEPS
Trigger: AGAGGGCTCTGCCCTCCTTCATCCAGACAGCAGATC...ACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp AGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATCTCGAGCGTAGATGGTaGATGTGGGGTGCTTGCAGA +
Preference number: 4 (lower is better)
Translates to: RGEATAGLKAFKCIKRINLERRW*MWGACR
Trigger: TCTGCAAGCACCCCACATTCACCATCTACGCTCGAG...ATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp GCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTTGTTGGATACCCACCTaGCAGGAGCCCTCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: AGLKAFKCIKRINVLSLCCWIPT*QEPSAP
Trigger: TGGGGCTGAGGGCTCCTGGCAGGTGGGTATCCAACA...ACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGCCTGTGGACACCCAGTaGCCCTCGATGGTCGGGGGC +
Preference number: 4 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKPVDTQ*PSMVGG
Trigger: GCCCCCGACCATCGAGGGCCACTGGGTGTCCACAGG...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTGCTGCAGCTCGTGCATaGCAAAGTTCACAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: RGNGRSQGIQVHQKNQCPAAARA*QSSQPW
Trigger: CCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGC...AGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GCTCTCTGCAGACATAAAGTGCAATCACACCTCTATGAAGTTCTCAGGCCACGGATGCACGCATGGTTGTaGTTCTTGGCATTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ALCRHKVQSHLYEVLRPRMHAWL*FLAFCR
Trigger: CCTGCAGAATGCCAAGAACCACAACCATGCGTGCAT...CCGTGGCCTGAGAACTTCATAGAGGTGTGATTGCACTTTATGTCTGCAGAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGTGTTGTTGTTGTCGTaGAAGATGAAGTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: GKTFKAETSNTLLMAQRLVLLLS*KMKWRV
Trigger: CACCCGCCACTTCATCTTCCACGACAACAACAACAC...CAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTGTGTCACATCCTGTTaGATACCCACCTGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: ERQRQVSRHSSASKESMSCVTSC*IPTCQE
Trigger: CTCCTGGCAGGTGGGTATCCAACAGGATGTGACACA...GGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGCATCTGGTAGGATGTaGCTCTCTTCTCTGGTCTGT +
Preference number: 4 (lower is better)
Translates to: GKTFKAETSNTLLMAQRLASGRM*LSSLVC
Trigger: ACAGACCAGAGAAGAGAGCCACATCCTACCAGATGC...CAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp CCTCATGTTCTGCTACATCAGTGGCCTAAAGCCCAGTaGCAGCTGACCTGTGAGTTCTGCAAGAATCTTCCA +
Preference number: 4 (lower is better)
Translates to: PHVLLHQWPKAQ*QLTCEFCKNLP
Trigger: TGGAAGATTCTTGCAGAACTCACAGGTCAGCTGCAACTGGGCTTTAGGCCACTGATGTAGCAGAACATGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp CTGCTGAATTGCCCCATGTCTGAGAAAATGGACCCTTaGTTCTGTGGTGACTGGAGAGGAGACTCCATGAGT +
Preference number: 4 (lower is better)
Translates to: LLNCPMSEKMDP*FCGDWRGDSMS
Trigger: ACTCATGGAGTCTCCTCTCCAGTCACCACAGAACAAAGGGTCCATTTTCTCAGACATGGGGCAATTCAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp AAATGGGGGAAATTGACTCGGCTCTGCCAGACCTTTTaGGAGAGAGCAACCAGGGAGAAACCATCTTTAGGG +
Preference number: 4 (lower is better)
Translates to: KWGKLTRLCQTF*ERATREKPSLG
Trigger: CCCTAAAGATGGTTTCTCCCTGGTTGCTCTCTCCAAAAAGGTCTGGCAGAGCCGAGTCAATTTCCCCCATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp GTATGCCACTGGGTATCTGGAATAAGGTCCCCATGGTaGTACAGCAAGCAAGCATTTCACCAGCTGAGCCTT +
Preference number: 4 (lower is better)
Translates to: VCHWVSGIRSPW*YSKQAFHQLSL
Trigger: AAGGCTCAGCTGGTGAAATGCTTGCTTGCTGTACAACCATGGGGACCTTATTCCAGATACCCAGTGGCATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTCTGTGTGAGGTAGTTTaGTGCCCAGAGCCACGCAGC +
Preference number: 4 (lower is better)
Translates to: AGLKAFKCIKRINVLSLCLCEVV*CPEPRS
Trigger: GCTGCGTGGCTCTGGGCATCAAACTACCTCACACAG...ACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp ACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTCCACACGGATGAGCTaGAGCTCGTGCATGGCAAAG +
Preference number: 4 (lower is better)
Translates to: TAGLKAFKCIKRINVLSLSTRMS*SSCMAK
Trigger: CTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGA...CAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTATGATCCAGGACGCCTaGCGAAGCCGGATCTTGCCT +
Preference number: 4 (lower is better)
Translates to: AGLKAFKCIKRINVLSLCMIQDA*RSRILP
Trigger: AGGCAAGATCCGGCTTCGCCAGGCGTCCTGGATCAT...ACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGAGTGGGGCGGCTGGTAACTaGACGGCCGGTAGAACACCC +
Preference number: 4 (lower is better)
Translates to: KRINVLSLCEGKSYTVKSGAAGN*TAGRTP
Trigger: GGGTGTTCTACCGGCCGTCCAGTTACCAGCCGCCCC...ACTCTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCGAGCCACGCAGCCATTaGTATGTGTCACATCCTGTT +
Preference number: 4 (lower is better)
Translates to: GEATAGLKAFKCIKRINVEPRSH*YVSHPV
Trigger: AACAGGATGTGACACATACCAATGGCTGCGTGGCTC...GACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp CGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGAGGATGCGCCAATGTaGGAGAGTCCAAAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: RQVSRHSSASKESMSFLCEDAPM*ESPKAD
Trigger: GTCAGCCTTTGGACTCTCCCACATTGGCGCATCCTC...ACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp GACTGGAGAGGAGACTCCATGAGTTTTCTTTGGAGATaGATGGGCGGGGGCAGTTTGAACTCTTTACTGTCA +
Preference number: 4 (lower is better)
Translates to: DWRGDSMSFLWR*MGGGSLNSLLS
Trigger: TGACAGTAAAGAGTTCAAACTGCCCCCGCCCATCAATCTCCAAAGAAAACTCATGGAGTCTCCTCTCCAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGATCTGCTGTCTGGATaGAGGAGGGCAGAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: VSRHSSASKESMSFLCVKDLLSG*RRAEPS
Trigger: AGAGGGCTCTGCCCTCCTTCATCCAGACAGCAGATC...CTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp AAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGAGTGGGGCATCTGCACTGTaGTCCGCGCACCGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: KRINVLSLCEGKSYTVKSGASAL*SAHRCG
Trigger: TCCACAACGGTGCGCGGATCACAGTGCAGATGCCCC...ACTCTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp AGTCTCAGTGTCATGTATCTCAAATCTTGTAGGGATGGAAGGCAGTATTCACAACCTCTGTGTGGCAGATaGCTTGGACGCCGTGAAGCT +
Preference number: 4 (lower is better)
Translates to: SLSVMYLKSCRDGRQYSQPLCGR*LGRREA
Trigger: AGCTTCACGGCGTCCAAGTCATCTGCCACACAGAGG...TTGTGAATACTGCCTTCCATCCCTACAAGATTTGAGATACATGACACTGAGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTTGCAGACAGGGTCTaGGTAGTGGTAGTAATGCCC +
Preference number: 4 (lower is better)
Translates to: ATAGLKAFKCIKRINVLSLADRV*VVVVMP
Trigger: GGGCATTACTACCACTACTCAGACCCTGTCTGCAAG...AGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp CGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTCTTGCAGACAGGGTCTaGGTAGTGGTAGTAATGCCC +
Preference number: 4 (lower is better)
Translates to: RQVSRHSSASKESMSFLCLADRV*VVVVMP
Trigger: GGGCATTACTACCACTACTCAGACCCTGTCTGCAAG...ACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp TGTAGGCATCCAAGGAGACTAGAAGAGGCTGTTGGATCCTTTGAAGCTATTGTTCTTGCAGACAGGGTCTaGGTAGTGGTAGTAATGCCC +
Preference number: 4 (lower is better)
Translates to: CRHPRRLEEAVGSFEAIVLADRV*VVVVMP
Trigger: GGGCATTACTACCACTACTCAGACCCTGTCTGCAAG...AACAATAGCTTCAAAGGATCCAACAGCCTCTTCTAGTCTCCTTGGATGCCTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGTGGGCCTCTGGCCATTaGACAGCAGGTAGCGGCCTC +
Preference number: 4 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKWASGH*TAGSGL
Trigger: GAGGCCGCTACCTGCTGTTCAATGGCCAGAGGCCCA...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp CGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGGAGAGTCCAAAGGCTaGCAAAGGCAGGAAGCAACA +
Preference number: 4 (lower is better)
Translates to: RQVSRHSSASKESMSFLCGESKG*QRQEAT
Trigger: TGTTGCTTCCTGCCTTTGTCAGCCTTTGGACTCTCC...ACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp CGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTATGCAACAGGAGGGCTaGGAACAGGTATCCAAGCAG +
Preference number: 4 (lower is better)
Translates to: RQVSRHSSASKESMSFLCMQQEG*EQVSKQ
Trigger: CTGCTTGGATACCTGTTCCCAGCCCTCCTGTTGCAT...ACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAACTCACCCATTCCCCGTaGAGGCCAATGGTCAGGTCA +
Preference number: 4 (lower is better)
Translates to: GLKAFKCIKRINVLSLCELTHSP*RPMVRS
Trigger: TGACCTGACCATTGGCCTCCACGGGGAATGGGTGAG...TTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTGTGTTGTTGTTGTCGTaGAAGATGAAGTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: RGNGRSQGIQVHQKNQCPVLLLS*KMKWRV
Trigger: CACCCGCCACTTCATCTTCCACGACAACAACAACAC...AGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp ACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGTCACATCCTGTTaGATACCCACCTGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: TAGLKAFKCIKRINVLSLCVTSC*IPTCQE
Trigger: CTCCTGGCAGGTGGGTATCCAACAGGATGTGACACA...CAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGGAGCCACGCAGCCATTaGTATGTGTCACATCCTGTT +
Preference number: 4 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGEPRSH*YVSHPV
Trigger: AACAGGATGTGACACATACCAATGGCTGCGTGGCTC...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGAGTCTGGTCTGTCTGGGCTaGAGCCATCGCTGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: KRINVLSLCEGKSYTVKSLVCLG*SHRWAS
Trigger: AGAGGCCCAGCGATGGCTCCAGCCCAGACAGACCAG...ACTCTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCGGAGTAACCTTCATGTaGTTCACTTTGAACACAAAC +
Preference number: 4 (lower is better)
Translates to: AGRHSKLKLQTHCSWRRGGVTFM*FTLNTN
Trigger: GTTTGTGTTCAAAGTGAATCACATGAAGGTTACTCC...GCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGTGTTGGATACCCACCTaGCAGGAGCCCTCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKCWIPT*QEPSAP
Trigger: TGGGGCTGAGGGCTCCTGGCAGGTGGGTATCCAACA...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp TCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAATGATCCAGGACGCCTaGCGAAGCCGGATCTTGCCT +
Preference number: 4 (lower is better)
Translates to: SRHSSASKESMSFLCVKEMIQDA*RSRILP
Trigger: AGGCAAGATCCGGCTTCGCCAGGCGTCCTGGATCAT...TTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGAGTGCGACTGCCTCTGTGTaGCAGATGACTTGGACGCCG +
Preference number: 4 (lower is better)
Translates to: KRINVLSLCEGKSYTVKSATASV*QMTWTP
Trigger: CGGCGTCCAAGTCATCTGCCACACAGAGGCAGTCGC...ACTCTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GAAGCTATTGTTACAGACAGATATGAGCTTCCAGTCATAGGTGCTGGAAATCAAGCTGCAGCTCGTGCATaGCAAAGTTCACAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: EAIVTDRYELPVIGAGNQAAARA*QSSQPW
Trigger: CCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGC...TTGATTTCCAGCACCTATGACTGGAAGCTCATATCTGTCTGTAACAATAGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCAGGCTATGCACGCATaGTTGTGGTTCTTGGCATTC +
Preference number: 4 (lower is better)
Translates to: ATAGLKAFKCIKRINVLSQAMHA*LWFLAF
Trigger: GAATGCCAAGAACCACAACCATGCGTGCATAGCCTG...AGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp TCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAACTCACCCATTCCCCGTaGAGGCCAATGGTCAGGTCA +
Preference number: 4 (lower is better)
Translates to: SRHSSASKESMSFLCVKELTHSP*RPMVRS
Trigger: TGACCTGACCATTGGCCTCCACGGGGAATGGGTGAG...TTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp CATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATCTTCTCTGGTCTGTCTaGGCTGGAGCCATCGCTGGG +
Preference number: 4 (lower is better)
Translates to: HSSASKESMSFLCVKESHLLWSV*AGAIAG
Trigger: CCCAGCGATGGCTCCAGCCCAGACAGACCAGAGAAG...ATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp TGTGGCTTCAAGGTCACACATAACATCAAGATCACCTaGGCACACATAAGGGACCTGACTCTAGAGACCCTA +
Preference number: 4 (lower is better)
Translates to: CGFKVTHNIKIT*AHIRDLTLETL
Trigger: TAGGGTCTCTAGAGTCAGGTCCCTTATGTGTGCCAAGGTGATCTTGATGTTATGTGTGACCTTGAAGCCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp GAGACTCTGACCTGCTTGCTTAGACAGGAAGATGGTTaGCAAAGAACCTTTAGGCAGACTCATGTTCACCCT +
Preference number: 4 (lower is better)
Translates to: ETLTCLLRQEDG*QRTFRQTHVHP
Trigger: AGGGTGAACATGAGTCTGCCTAAAGGTTCTTTGCAAACCATCTTCCTGTCTAAGCAAGCAGGTCAGAGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGCCTCTGTGTGGCAGATaGCTTGGACGCCGTGAAGCT +
Preference number: 4 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKPLCGR*LGRREA
Trigger: AGCTTCACGGCGTCCAAGTCATCTGCCACACAGAGG...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCATGTGATTCACTTTaGACACAAACTCCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: GNGRSQGIQVHQKNQCPFSCDSL*TQTPCH
Trigger: GTGGCACGGAGTTTGTGTTCAAAGTGAATCACATGA...GAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp TCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAATTACTTCACAGCCTGTaGACACCCAGTGGCCCTCGA +
Preference number: 4 (lower is better)
Translates to: SRHSSASKESMSFLCVKELLHSL*TPSGPR
Trigger: TCGAGGGCCACTGGGTGTCCACAGGCTGTGAAGTAA...TTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp ATCGATCCCAATGGCTCCAAGAGGAACTTTTTAAAGAGGACATTGTGTGTGATGCAGGCTATGCACGCATaGTTGTGGTTCTTGGCATTC +
Preference number: 4 (lower is better)
Translates to: IDPNGSKRNFLKRTLCVMQAMHA*LWFLAF
Trigger: GAATGCCAAGAACCACAACCATGCGTGCATAGCCTG...CATCACACACAATGTCCTCTTTAAAAAGTTCCTCTTGGAGCCATTGGGATCGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTGAGGATGCGCCAATGTaGGAGAGTCCAAAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: RHSSASKESMSFLCVKESEDAPM*ESPKAD
Trigger: GTCAGCCTTTGGACTCTCCCACATTGGCGCATCCTC...ACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp GATTGGTTCACTTGGAGAAAAACTCCACAGATCTCCTaGTCAGTTGTGTGGCACTTAACACAAGGAATCCCC +
Preference number: 4 (lower is better)
Translates to: DWFTWRKTPQIS*SVVWHLTQGIP
Trigger: GGGGATTCCTTGTGTTAAGTGCCACACAACTGACAAGGAGATCTGTGGAGTTTTTCTCCAAGTGAACCAATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp TCTCCAGAACCACAAAGCAAAATAAACCTGCATCCTTaGCCAACCATCCAGCCTCATGTTCTGCTACATCAG +
Preference number: 4 (lower is better)
Translates to: SPEPQSKINLHP*PTIQPHVLLHQ
Trigger: CTGATGTAGCAGAACATGAGGCTGGATGGTTGGCAAAGGATGCAGGTTTATTTTGCTTTGTGGTTCTGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp AGTGGGATAATGACTAAAAAGGAGCTATCTTCATCATaGGTGATTGTGCTGCAAGCCAGTGACACTCTGGCC +
Preference number: 4 (lower is better)
Translates to: SGIMTKKELSSS*VIVLQASDTLA
Trigger: GGCCAGAGTGTCACTGGCTTGCAGCACAATCACCAATGATGAAGATAGCTCCTTTTTAGTCATTATCCCACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp AACAAGGAGGAACAAGATAATGAGCAGCATCCTTCCTaGGCTTTCCAATCAATTCCTGCTTCCAGGTTCCTG +
Preference number: 4 (lower is better)
Translates to: NKEEQDNEQHPS*AFQSIPASRFL
Trigger: CAGGAACCTGGAAGCAGGAATTGATTGGAAAGCCAAGGAAGGATGCTGCTCATTATCTTGTTCCTCCTTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp CGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTTCATGTGATTCACTTTaGACACAAACTCCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: RQVSRHSSASKESMSFLCSCDSL*TQTPCH
Trigger: GTGGCACGGAGTTTGTGTTCAAAGTGAATCACATGA...ACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp ACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTCATGTGATTCACTTTaGACACAAACTCCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: TAGLKAFKCIKRINVLSLSCDSL*TQTPCH
Trigger: GTGGCACGGAGTTTGTGTTCAAAGTGAATCACATGA...CAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGCTCTTCAGCTCTTGGTaGGGAAGAGGCACACTGGAC +
Preference number: 4 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKLFSSW*GRGTLD
Trigger: GTCCAGTGTGCCTCTTCCTCACCAAGAGCTGAAGAG...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR GCA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGTCCACACGGATGAGCTaGAGCTCGTGCATGGCAAAG +
Preference number: 4 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKSTRMS*SSCMAK
Trigger: CTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGA...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp TCCTGCTTACACTATGTTAATATCTATCATCCCTTTGTGGGCATATATGCAGCAATGCAACAGGAGGGCTaGGAACAGGTATCCAAGCAG +
Preference number: 4 (lower is better)
Translates to: SCLHYVNIYHPFVGIYAAMQQEG*EQVSKQ
Trigger: CTGCTTGGATACCTGTTCCCAGCCCTCCTGTTGCAT...TGCTGCATATATGCCCACAAAGGGATGATAGATATTAACATAGTGTAAGCAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGAGCCACGCAGCCATTaGTATGTGTCACATCCTGTT +
Preference number: 4 (lower is better)
Translates to: GLKAFKCIKRINVLSLCEEPRSH*YVSHPV
Trigger: AACAGGATGTGACACATACCAATGGCTGCGTGGCTC...TTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp GGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGCATCTGGTAGGATGTaGCTCTCTTCTCTGGTCTGT +
Preference number: 4 (lower is better)
Translates to: GLKAFKCIKRINVLSLCEASGRM*LSSLVC
Trigger: ACAGACCAGAGAAGAGAGCCACATCCTACCAGATGC...TTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGAGTGAGGATGCGCCAATGTaGGAGAGTCCAAAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: KRINVLSLCEGKSYTVKSEDAPM*ESPKAD
Trigger: GTCAGCCTTTGGACTCTCCCACATTGGCGCATCCTC...ACTCTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp AAATCGAAAGAACAACGAAAGCATCTCAGTATTGACTaGTCATGTCTGACCCTCAAGTCTGGATGGCCTCGA +
Preference number: 4 (lower is better)
Translates to: KSKEQRKHLSID*SCLTLKSGWPR
Trigger: TCGAGGCCATCCAGACTTGAGGGTCAGACATGACAAGTCAATACTGAGATGCTTTCGTTGTTCTTTCGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp TGGACTAGTCTAGGGTCAGGCATACCTTTTTCAGACTaGTTCCAAGTCAGACATAGTAGAACTGGTCTGTCA +
Preference number: 4 (lower is better)
Translates to: WTSLGSGIPFSD*FQVRHSRTGLS
Trigger: TGACAGACCAGTTCTACTATGTCTGACTTGGAACAAGTCTGAAAAAGGTATGCCTGACCCTAGACTAGTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp AAACTGTCTTTATTTGTTCTTTCTGCAGACATAGCCTaGTGGGAGCTGTTTGGACCCGTAAAAGCTCAGGTG +
Preference number: 4 (lower is better)
Translates to: KLSLFVLSADIA*WELFGPVKAQV
Trigger: CACCTGAGCTTTTACGGGTCCAAACAGCTCCCACAAGGCTATGTCTGCAGAAAGAACAAATAAAGACAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
3UTR CAA 72 bp ATGCACACTCATGGTATGTCTGCTGGTGAAAATCTGTaGGTTCTCTTCTTCTATCATGCAGGTCCTAGGATC +
Preference number: 4 (lower is better)
Translates to: MHTHGMSAGENL*VLFFYHAGPRI
Trigger: GATCCTAGGACCTGCATGATAGAAGAAGAGAACCAACAGATTTTCACCAGCAGACATACCATGAGTGTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp AGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTGGAGTAACCTTCATGTaGTTCACTTTGAACACAAAC +
Preference number: 4 (lower is better)
Translates to: RGNGRSQGIQVHQKNQCPGVTFM*FTLNTN
Trigger: GTTTGTGTTCAAAGTGAATCACATGAAGGTTACTCC...AGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp AAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGAGTGGAGAGTCCAAAGGCTaGCAAAGGCAGGAAGCAACA +
Preference number: 4 (lower is better)
Translates to: KRINVLSLCEGKSYTVKSGESKG*QRQEAT
Trigger: TGTTGCTTCCTGCCTTTGTCAGCCTTTGGACTCTCC...ACTCTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp AGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTGCATCTGGTAGGATGTaGCTCTCTTCTCTGGTCTGT +
Preference number: 4 (lower is better)
Translates to: RHSSASKESMSFLCVKESASGRM*LSSLVC
Trigger: ACAGACCAGAGAAGAGAGCCACATCCTACCAGATGC...ACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp AGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATAAAACTGGTAGGCCTTaGAGGTATTATTGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: RGEATAGLKAFKCIKRINKTGRP*RYYCCR
Trigger: TCTACAACAATAATACCTTCAAGGCCTACCAGTTTT...ATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGAAAACTGGTAGGCCTTaGAGGTATTATTGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGKTGRP*RYYCCR
Trigger: TCTACAACAATAATACCTTCAAGGCCTACCAGTTTT...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp GGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGGGAGTAACCTTCATGTaGTTCACTTTGAACACAAAC +
Preference number: 4 (lower is better)
Translates to: GRSQGIQVHQKNQCPFSVGVTFM*FTLNTN
Trigger: GTTTGTGTTCAAAGTGAATCACATGAAGGTTACTCC...CACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp CATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATATGCACGCATGGTTGTaGTTCTTGGCATTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: HSSASKESMSFLCVKESHMHAWL*FLAFCR
Trigger: CCTGCAGAATGCCAAGAACCACAACCATGCGTGCAT...ATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGCAGGCTATGCACGCATaGTTGTGGTTCTTGGCATTC +
Preference number: 4 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKQAMHA*LWFLAF
Trigger: GAATGCCAAGAACCACAACCATGCGTGCATAGCCTG...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CCA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGGTGTTGTTGTTGTCGTaGAAGATGAAGTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKVLLLS*KMKWRV
Trigger: CACCCGCCACTTCATCTTCCACGACAACAACAACAC...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
3UTR CAA 72 bp ATGTGTGCCTTTTATTGTGCTCCAAGACATCTCAATTaGTTCTTACAATCCAGGATCTGGCTCATGATGCTG +
Preference number: 4 (lower is better)
Translates to: MCAFYCAPRHLN*FLQSRIWLMML
Trigger: CAGCATCATGAGCCAGATCCTGGATTGTAAGAACAAATTGAGATGTCTTGGAGCACAATAAAAGGCACACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR TCA 90 bp TCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAAAACTGGTAGGCCTTaGAGGTATTATTGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: SRHSSASKESMSFLCVKEKTGRP*RYYCCR
Trigger: TCTACAACAATAATACCTTCAAGGCCTACCAGTTTT...TTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGA
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 90 bp CAGGCGCTTTTCTCTAAGGACCGAGGGTGCGATCTGCTGTCTGGATaGAGGAGGGCAGAGCCCTCTCCCAGCCCATGCAACAGGAGGGCT +
Preference number: 5 (lower is better)
Translates to: QALFSKDRGCDLLSG*RRAEPSPSPCNRRA
Trigger: AGCCCTCCTGTTGCATGGGCTGGGAGAGGGCTCTGCCCTCCTTCATCCAGACAGCAGATCGCACCCTCGGTCCTTAGAGAAAAGCGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS CCA 90 bp ATAGGCTACGTCCTGTACCCAGGGACCACCAGGAGCCAGGAAGCCTaGGCAAGTTCGGTTCACCAGTCGGCTGAGCTGTTCAGCGACTGC +
Preference number: 5 (lower is better)
Translates to: IGYVLYPGTTRSQEA*ASSVHQSAELFSDC
Trigger: GCAGTCGCTGAACAGCTCAGCCGACTGGTGAACCGAACTTGCCCAGGCTTCCTGGCTCCTGGTGGTCCCTGGGTACAGGACGTAGCCTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 90 bp CTGTGGACACCCAGTGGCCCTCGATGGTCGGGGGCATCTGCACTGTaGTCCGCGCACCGTTGTGGAGATGCTTCAGCATGTGATGACACT +
Preference number: 5 (lower is better)
Translates to: LWTPSGPRWSGASAL*SAHRCGDASACDDT
Trigger: AGTGTCATCACATGCTGAAGCATCTCCACAACGGTGCGCGGATCACAGTGCAGATGCCCCCGACCATCGAGGGCCACTGGGTGTCCACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 90 bp CCAGGTGGTCCAGGCTGTGGTGGGGATACTGCTTCTCCACACGGATaGGCTGCAGCTCGTGCATGGCAAAGTTCACAGCCTTGGTGCACT +
Preference number: 5 (lower is better)
Translates to: PGGPGCGGDTASPHG*AAARAWQSSQPWCT
Trigger: AGTGCACCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGAGAAGCAGTATCCCCACCACAGCCTGGACCACCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 90 bp TGGTCCAGGCTGTGGTGGGGATACTGCTTCTCCACACGGATGAGCTaGAGCTCGTGCATGGCAAAGTTCACAGCCTTGGTGCACTCGTGG +
Preference number: 5 (lower is better)
Translates to: WSRLWWGYCFSTRMS*SSCMAKFTALVHSW
Trigger: CCACGAGTGCACCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGAGAAGCAGTATCCCCACCACAGCCTGGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 90 bp AGGAAGAGCTCCTCCACCAGGTGGTCCAGGCTGTGGTGGGGATACTaGTTCTCCACACGGATGAGCTGCAGCTCGTGCATGGCAAAGTTC +
Preference number: 5 (lower is better)
Translates to: RKSSSTRWSRLWWGY*FSTRMSCSSCMAKF
Trigger: GAACTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGAGAAGCAGTATCCCCACCACAGCCTGGACCACCTGGTGGAGGAGCTCTTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 90 bp CTGTGGTGGGGATACTGCTTCTCCACACGGATGAGCTGCAGCTCGTaGATGGCAAAGTTCACAGCCTTGGTGCACTCGTGGTTACTCTCC +
Preference number: 5 (lower is better)
Translates to: LWWGYCFSTRMSCSS*MAKFTALVHSWLLS
Trigger: GGAGAGTAACCACGAGTGCACCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGAGAAGCAGTATCCCCACCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GAAGAGGTGGGGAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCATGTGTCACATCCTGTaGGATACCCACCTGCCAGGA +
Preference number: 5 (lower is better)
Translates to: EEVGRGEATAGLKAFKCIMCHIL*DTHLPG
Trigger: TCCTGGCAGGTGGGTATCCAACAGGATGTGACACAT...GATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTCCCCACCTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 90 bp CACCGTTGTGGAGATGCTTCAGCATGTGATGACACTGTGACTCCTTaGAAGCCCTCCAGGCGCTTTTCTCTAAGGACCGAGGGTGCGATC +
Preference number: 5 (lower is better)
Translates to: HRCGDASACDDTVTP*KPSRRFSLRTEGAI
Trigger: GATCGCACCCTCGGTCCTTAGAGAAAAGCGCCTGGAGGGCTTTCAAGGAGTCACAGTGTCATCACATGCTGAAGCATCTCCACAACGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GCGGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCGGGTGTAGGTGGGGTTaGTACAGCGGTTGCTGCCAT +
Preference number: 5 (lower is better)
Translates to: AGRHSKLKLQTHCSWRRGGCRWG*YSGCCH
Trigger: ATGGCAGCAACCGCTGTACAAACCCCACCTACACCC...GCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp ATCACTACTCAGAGACAACCCTGTGAAGACAAGCCAGCATGCTCACCCTCTTTGGGGTGTAGGTGGGGTTaGTACAGCGGTTGCTGCCAT +
Preference number: 5 (lower is better)
Translates to: ITTQRQPCEDKPACSPSLGCRWG*YSGCCH
Trigger: ATGGCAGCAACCGCTGTACAAACCCCACCTACACCC...CAAAGAGGGTGAGCATGCTGGCTTGTCTTCACAGGGTTGTCTCTGAGTAGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGTTCCCACTGAAGACATaGAGGAGGGAGGCTGTGGCT +
Preference number: 5 (lower is better)
Translates to: GKTFKAETSNTLLMAQRLFPLKT*RREAVA
Trigger: AGCCACAGCCTCCCTCCTCAATGTCTTCAGTGGGAA...CAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 90 bp ATACAGATGACCTTGACTGTCTTCCAACAACTCTTCAGCTCTTGGTaGGGAAGAGGCACACTGGACCAAGGGCATCTGGTAGGATGTGGC +
Preference number: 5 (lower is better)
Translates to: IQMTLTVFQQLFSSW*GRGTLDQGHLVGCG
Trigger: GCCACATCCTACCAGATGCCCTTGGTCCAGTGTGCCTCTTCCTCACCAAGAGCTGAAGAGTTGTTGGAAGACAGTCAAGGTCATCTGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GGGAAGACATTCAAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGCAAAGTTCACAGCCTaGGTGCACTCGTGGTTACTC +
Preference number: 5 (lower is better)
Translates to: GKTFKAETSNTLLMAQRLAKFTA*VHSWLL
Trigger: GAGTAACCACGAGTGCACCAAGGCTGTGAACTTTGC...CAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTTGAATGTCTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCGCGGCCTCGGGTGTCTaGCTCCATTTTGAAGATCTC +
Preference number: 5 (lower is better)
Translates to: ERQRQVSRHSSASKESMSAASGV*LHFEDL
Trigger: GAGATCTTCAAAATGGAGCAAGACACCCGAGGCCGC...GGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTGGGTGTAGGTGGGGTTaGTACAGCGGTTGCTGCCAT +
Preference number: 5 (lower is better)
Translates to: ATAGLKAFKCIKRINVLSGCRWG*YSGCCH
Trigger: ATGGCAGCAACCGCTGTACAAACCCCACCTACACCC...AGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp AGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATTGTGTGGCAGATGACTaGGACGCCGTGAAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: RGEATAGLKAFKCIKRINCVADD*DAVKLV
Trigger: TACCAGCTTCACGGCGTCCAAGTCATCTGCCACACA...ATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCGCAAAGTTCACAGCCTaGGTGCACTCGTGGTTACTC +
Preference number: 5 (lower is better)
Translates to: GNGRSQGIQVHQKNQCPFAKFTA*VHSWLL
Trigger: GAGTAACCACGAGTGCACCAAGGCTGTGAACTTTGC...GAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTCCCAGGTGTTGTTGTaGTCGTGGAAGATGAAGTGG +
Preference number: 5 (lower is better)
Translates to: ERQRQVSRHSSASKESMSSQVLL*SWKMKW
Trigger: CCACTTCATCTTCCACGACAACAACAACACCTGGGA...GGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp ACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTTCCCACTGAAGACATaGAGGAGGGAGGCTGTGGCT +
Preference number: 5 (lower is better)
Translates to: TAGLKAFKCIKRINVLSLFPLKT*RREAVA
Trigger: AGCCACAGCCTCCCTCCTCAATGTCTTCAGTGGGAA...CAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp TGCAAGGATAGACTCCCAGAAGGTTCTTTAGACAATGTACTTTGTCACACCGGGATGTGTCACATCCTGTaGGATACCCACCTGCCAGGA +
Preference number: 5 (lower is better)
Translates to: CKDRLPEGSLDNVLCHTGMCHIL*DTHLPG
Trigger: TCCTGGCAGGTGGGTATCCAACAGGATGTGACACAT...CCCGGTGTGACAAAGTACATTGTCTAAAGAACCTTCTGGGAGTCTATCCTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp AGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTAGAGCCACGCAGCCATaGGTATGTGTCACATCCTGT +
Preference number: 5 (lower is better)
Translates to: RGNGRSQGIQVHQKNQCPRATQP*VCVTSC
Trigger: ACAGGATGTGACACATACCAATGGCTGCGTGGCTCT...AGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp CAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCGCGGCCTCGGGTGTCTaGCTCCATTTTGAAGATCTC +
Preference number: 5 (lower is better)
Translates to: QRQVSRHSSASKESMSFLAASGV*LHFEDL
Trigger: GAGATCTTCAAAATGGAGCAAGACACCCGAGGCCGC...GAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGGCGGCCTCGGGTGTCTaGCTCCATTTTGAAGATCTC +
Preference number: 5 (lower is better)
Translates to: GRSQGIQVHQKNQCPFSVAASGV*LHFEDL
Trigger: GAGATCTTCAAAATGGAGCAAGACACCCGAGGCCGC...CACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GGAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAGCCATACAGATGACCTaGACTGTCTTCCAACAACTC +
Preference number: 5 (lower is better)
Translates to: GEERQRQVSRHSSASKESAIQMT*TVFQQL
Trigger: GAGTTGTTGGAAGACAGTCAAGGTCATCTGTATGGC...TGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp TCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAATGGCGAAGCCGGATCTaGCCTCGGATGATGAGGGTG +
Preference number: 5 (lower is better)
Translates to: SRHSSASKESMSFLCVKEWRSRI*PRMMRV
Trigger: CACCCTCATCATCCGAGGCAAGATCCGGCTTCGCCA...TTCCTTCACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp ACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGGCAAAGTTCACAGCCTaGGTGCACTCGTGGTTACTC +
Preference number: 5 (lower is better)
Translates to: TAGLKAFKCIKRINVLSLAKFTA*VHSWLL
Trigger: GAGTAACCACGAGTGCACCAAGGCTGTGAACTTTGC...CAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp ATCGATCCCAATGGCTCCAAGAGGAACTTTTTAAAGAGGACATTGTGTGTGATGTTCCCACTGAAGACATaGAGGAGGGAGGCTGTGGCT +
Preference number: 5 (lower is better)
Translates to: IDPNGSKRNFLKRTLCVMFPLKT*RREAVA
Trigger: AGCCACAGCCTCCCTCCTCAATGTCTTCAGTGGGAA...CATCACACACAATGTCCTCTTTAAAAAGTTCCTCTTGGAGCCATTGGGATCGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp CAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCAGAGCCACGCAGCCATaGGTATGTGTCACATCCTGT +
Preference number: 5 (lower is better)
Translates to: QRQVSRHSSASKESMSFLRATQP*VCVTSC
Trigger: ACAGGATGTGACACATACCAATGGCTGCGTGGCTCT...GAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp TGTAGGCATCCAAGGAGACTAGAAGAGGCTGTTGGATCCTTTGAAGCTATTGTTAGAGCCACGCAGCCATaGGTATGTGTCACATCCTGT +
Preference number: 5 (lower is better)
Translates to: CRHPRRLEEAVGSFEAIVRATQP*VCVTSC
Trigger: ACAGGATGTGACACATACCAATGGCTGCGTGGCTCT...AACAATAGCTTCAAAGGATCCAACAGCCTCTTCTAGTCTCCTTGGATGCCTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp AAAGCTGAAACTTCAAACACACTGCTCATGGCGCAGAGGCTGGAAGAGGTGGGGGTGTCTTGCTCCATTTaGAAGATCTCATATTCTGTG +
Preference number: 5 (lower is better)
Translates to: KAETSNTLLMAQRLEEVGVSCSI*KISYSV
Trigger: CACAGAATATGAGATCTTCAAAATGGAGCAAGACAC...CCCCACCTCTTCCAGCCTCTGCGCCATGAGCAGTGTGTTTGAAGTTTCAGCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGTGGCGAAGCCGGATCTaGCCTCGGATGATGAGGGTG +
Preference number: 5 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKWRSRI*PRMMRV
Trigger: CACCCTCATCATCCGAGGCAAGATCCGGCTTCGCCA...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp CAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTCCCAGGTGTTGTTGTaGTCGTGGAAGATGAAGTGG +
Preference number: 5 (lower is better)
Translates to: QRQVSRHSSASKESMSFLSQVLL*SWKMKW
Trigger: CCACTTCATCTTCCACGACAACAACAACACCTGGGA...GAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTTCCCAGGTGTTGTTGTaGTCGTGGAAGATGAAGTGG +
Preference number: 5 (lower is better)
Translates to: ATAGLKAFKCIKRINVLSSQVLL*SWKMKW
Trigger: CCACTTCATCTTCCACGACAACAACAACACCTGGGA...AGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCTCTGTGTATGTGTCACATCCTGTaGGATACCCACCTGCCAGGA +
Preference number: 5 (lower is better)
Translates to: AGLKAFKCIKRINVLSLCMCHIL*DTHLPG
Trigger: TCCTGGCAGGTGGGTATCCAACAGGATGTGACACAT...ACACAGAGAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCTTTCGCCATACAGATGACCTaGACTGTCTTCCAACAACTC +
Preference number: 5 (lower is better)
Translates to: GNGRSQGIQVHQKNQCPFAIQMT*TVFQQL
Trigger: GAGTTGTTGGAAGACAGTCAAGGTCATCTGTATGGC...GAAAGGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp AAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGAGTTGTGTGGCAGATGACTaGGACGCCGTGAAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: KRINVLSLCEGKSYTVKSCVADD*DAVKLV
Trigger: TACCAGCTTCACGGCGTCCAAGTCATCTGCCACACA...ACTCTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GAGAGGAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAAGTGTCTTGCTCCATTTaGAAGATCTCATATTCTGTG +
Preference number: 5 (lower is better)
Translates to: ERRGNGRSQGIQVHQKNQVSCSI*KISYSV
Trigger: CACAGAATATGAGATCTTCAAAATGGAGCAAGACAC...TTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTCCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp GAGAGGCAACGGCAGGTCTCAAGGCATTCAAGTGCATCAAAAGAATCAATGTCCGTGTCTTGCTCCATTTaGAAGATCTCATATTCTGTG +
Preference number: 5 (lower is better)
Translates to: ERQRQVSRHSSASKESMSVSCSI*KISYSV
Trigger: CACAGAATATGAGATCTTCAAAATGGAGCAAGACAC...GGACATTGATTCTTTTGATGCACTTGAATGCCTTGAGACCTGCCGTTGCCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS-3UTR CAA 90 bp ATCAAAAGAATCAATGTCCTTTCTCTGTGTGAAGGAAAGTCATACACGGTAAAGGCCATACAGATGACCTaGACTGTCTTCCAACAACTC +
Preference number: 5 (lower is better)
Translates to: IKRINVLSLCEGKSYTVKAIQMT*TVFQQL
Trigger: GAGTTGTTGGAAGACAGTCAAGGTCATCTGTATGGC...CTTTACCGTGTATGACTTTCCTTCACACAGAGAAAGGACATTGATTCTTTTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 72 bp CGTGAAGCTGGTAGTCAGCTTCGGTGCCCCCACGGATaGTCCAGGACGCCTGGCGAAGCCGGATCTTGCCTC +
Preference number: 6 (lower is better)
Translates to: REAGSQLRCPHG*SRTPGEAGSCL
Trigger: GAGGCAAGATCCGGCTTCGCCAGGCGTCCTGGATCATCCGTGGGGGCACCGAAGCTGACTACCAGCTTCACG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 72 bp GTGGACACCCAGTGGCCCTCGATGGTCGGGGGCATCTaGACTGTGATCCGCGCACCGTTGTGGAGATGCTTC +
Preference number: 6 (lower is better)
Translates to: VDTQWPSMVGGI*TVIRAPLWRCF
Trigger: GAAGCATCTCCACAACGGTGCGCGGATCACAGTGCAGATGCCCCCGACCATCGAGGGCCACTGGGTGTCCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS CCA 72 bp TCAGCTTCGGTGCCCCCACGGATGATCCAGGACGCCTaGCGAAGCCGGATCTTGCCTCGGATGATGAGGGTG +
Preference number: 6 (lower is better)
Translates to: SASVPPRMIQDA*RSRILPRMMRV
Trigger: CACCCTCATCATCCGAGGCAAGATCCGGCTTCGCCAGGCGTCCTGGATCATCCGTGGGGGCACCGAAGCTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 72 bp CCCAGTGGCCCTCGATGGTCGGGGGCATCTGCACTGTaGTCCGCGCACCGTTGTGGAGATGCTTCAGCATGT +
Preference number: 6 (lower is better)
Translates to: PSGPRWSGASAL*SAHRCGDASAC
Trigger: ACATGCTGAAGCATCTCCACAACGGTGCGCGGATCACAGTGCAGATGCCCCCGACCATCGAGGGCCACTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS CCA 72 bp GTCCTGTACCCAGGGACCACCAGGAGCCAGGAAGCCTaGGCAAGTTCGGTTCACCAGTCGGCTGAGCTGTTC +
Preference number: 6 (lower is better)
Translates to: VLYPGTTRSQEA*ASSVHQSAELF
Trigger: GAACAGCTCAGCCGACTGGTGAACCGAACTTGCCCAGGCTTCCTGGCTCCTGGTGGTCCCTGGGTACAGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS CCA 72 bp CCCAGGAAGAGCTCCTCCACCAGGTGGTCCAGGCTGTaGTGGGGATACTGCTTCTCCACACGGATGAGCTGC +
Preference number: 6 (lower is better)
Translates to: PRKSSSTRWSRL*WGYCFSTRMSC
Trigger: GCAGCTCATCCGTGTGGAGAAGCAGTATCCCCACCACAGCCTGGACCACCTGGTGGAGGAGCTCTTCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS CAA 90 bp CAGTCGGCTGAGCTGTTCAGCGACTGCCTCTGTGTGGCAGATGACTaGGACGCCGTGAAGCTGGTAGTCAGCTTCGGTGCCCCCACGGAT +
Preference number: 6 (lower is better)
Translates to: QSAELFSDCLCVADD*DAVKLVVSFGAPTD
Trigger: ATCCGTGGGGGCACCGAAGCTGACTACCAGCTTCACGGCGTCCAAGTCATCTGCCACACAGAGGCAGTCGCTGAACAGCTCAGCCGACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 72 bp TCCTCCACCAGGTGGTCCAGGCTGTGGTGGGGATACTaGTTCTCCACACGGATGAGCTGCAGCTCGTGCATG +
Preference number: 6 (lower is better)
Translates to: SSTRWSRLWWGY*FSTRMSCSSCM
Trigger: CATGCACGAGCTGCAGCTCATCCGTGTGGAGAAGCAGTATCCCCACCACAGCCTGGACCACCTGGTGGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 72 bp TCCAGGCGCTTTTCTCTAAGGACCGAGGGTGCGATCTaGTGTCTGGATGAAGGAGGGCAGAGCCCTCTCCCA +
Preference number: 6 (lower is better)
Translates to: SRRFSLRTEGAI*CLDEGGQSPLP
Trigger: TGGGAGAGGGCTCTGCCCTCCTTCATCCAGACAGCAGATCGCACCCTCGGTCCTTAGAGAAAAGCGCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS CAA 72 bp GAGCTGTTCAGCGACTGCCTCTGTGTGGCAGATGACTaGGACGCCGTGAAGCTGGTAGTCAGCTTCGGTGCC +
Preference number: 6 (lower is better)
Translates to: ELFSDCLCVADD*DAVKLVVSFGA
Trigger: GGCACCGAAGCTGACTACCAGCTTCACGGCGTCCAAGTCATCTGCCACACAGAGGCAGTCGCTGAACAGCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 72 bp CCAGGCTGTGGTGGGGATACTGCTTCTCCACACGGATaGGCTGCAGCTCGTGCATGGCAAAGTTCACAGCCT +
Preference number: 6 (lower is better)
Translates to: PGCGGDTASPHG*AAARAWQSSQP
Trigger: AGGCTGTGAACTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGAGAAGCAGTATCCCCACCACAGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 72 bp AGTTCGGTTCACCAGTCGGCTGAGCTGTTCAGCGACTaGCTCTGTGTGGCAGATGACTTGGACGCCGTGAAG +
Preference number: 6 (lower is better)
Translates to: SSVHQSAELFSD*LCVADDLDAVK
Trigger: CTTCACGGCGTCCAAGTCATCTGCCACACAGAGGCAGTCGCTGAACAGCTCAGCCGACTGGTGAACCGAACT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS CCA 72 bp TCTGACCGGAAAATGATGCGGCAGGCTATGCACGCATaGTTGTGGTTCTTGGCATTCTGCAGGGGCGGCTGG +
Preference number: 6 (lower is better)
Translates to: SDRKMMRQAMHA*LWFLAFCRGGW
Trigger: CCAGCCGCCCCTGCAGAATGCCAAGAACCACAACCATGCGTGCATAGCCTGCCGCATCATTTTCCGGTCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS CCA 72 bp ATGCACGCATGGTTGTGGTTCATGCAACAGGAGGGCTaGGAACAGGTATCCAAGCAGAAGGCGGCGCACACG +
Preference number: 6 (lower is better)
Translates to: MHAWLWFMQQEG*EQVSKQKAAHT
Trigger: CGTGTGCGCCGCCTTCTGCTTGGATACCTGTTCCCAGCCCTCCTGTTGCATGAACCACAACCATGCGTGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237428.2
CDS GCA 72 bp GCTGCAGCTCGTGCATGGCAAAGTTCACAGCCTTGGTaGACTCGTGGTTACTCTCCTCCTGCCACAGGTCAT +
Preference number: 6 (lower is better)
Translates to: AAARAWQSSQPW*TRGYSPPATGH
Trigger: ATGACCTGTGGCAGGAGGAGAGTAACCACGAGTGCACCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 72 bp GGATACTGCTTCTCCACACGGATGAGCTGCAGCTCGTaGATGGCAAAGTTCACAGCCTTGGTGCACTCGTGG +
Preference number: 6 (lower is better)
Translates to: GYCFSTRMSCSS*MAKFTALVHSW
Trigger: CCACGAGTGCACCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGAGAAGCAGTATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 72 bp CTGTGGTGGGGATACTGCTTCTCCACACGGATGAGCTaGAGCTCGTGCATGGCAAAGTTCACAGCCTTGGTG +
Preference number: 6 (lower is better)
Translates to: LWWGYCFSTRMS*SSCMAKFTALV
Trigger: CACCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGCTCATCCGTGTGGAGAAGCAGTATCCCCACCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS GCA 72 bp AAAGGCAGGAAGCAACAGGGACCCAGCTGTCCTCCCTaGTGCCCTGCCATACAGATGACCTTGACTGTCTTC +
Preference number: 6 (lower is better)
Translates to: KGRKQQGPSCPP*CPAIQMTLTVF
Trigger: GAAGACAGTCAAGGTCATCTGTATGGCAGGGCAGCAGGGAGGACAGCTGGGTCCCTGTTGCTTCCTGCCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS CAA 72 bp ATGAGCTGCAGCTCGTGCATGGCAAAGTTCACAGCCTaGGTGCACTCGTGGTTACTCTCCTCCTGCCACAGG +
Preference number: 6 (lower is better)
Translates to: MSCSSCMAKFTA*VHSWLLSSCHR
Trigger: CCTGTGGCAGGAGGAGAGTAACCACGAGTGCACCAAGGCTGTGAACTTTGCCATGCACGAGCTGCAGCTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 72 bp GCAGTATGGGAGGGTGGTGTTCATCTGACCGGAAAATaGTGCGGCAGGCTATGCACGCATGGTTGTGGTTCT +
Preference number: 6 (lower is better)
Translates to: AVWEGGVHLTGK*CGRLCTHGCGS
Trigger: AGAACCACAACCATGCGTGCATAGCCTGCCGCATCATTTTCCGGTCAGATGAACACCACCCTCCCATACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 72 bp GGAGATGCTTCAGCATGTGATGACACTGTGACTCCTTaGAAGCCCTCCAGGCGCTTTTCTCTAAGGACCGAG +
Preference number: 6 (lower is better)
Translates to: GDASACDDTVTP*KPSRRFSLRTE
Trigger: CTCGGTCCTTAGAGAAAAGCGCCTGGAGGGCTTTCAAGGAGTCACAGTGTCATCACATGCTGAAGCATCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 72 bp AGGTATTATTGTTGTAGAACCTGTAAGACCTTGTCATaGACTCCGGACCCGACCTTACTTCACAGCCTGTGG +
Preference number: 6 (lower is better)
Translates to: RYYCCRTCKTLS*TPDPTLLHSLW
Trigger: CCACAGGCTGTGAAGTAAGGTCGGGTCCGGAGTTCATGACAAGGTCTTACAGGTTCTACAACAATAATACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2
CDS TCA 72 bp TACAGCGGTTGCTGCCATAGTAAAACTGGTAGGCCTTaGAGGTATTATTGTTGTAGAACCTGTAAGACCTTG +
Preference number: 6 (lower is better)
Translates to: YSGCCHSKTGRP*RYYCCRTCKTL
Trigger: CAAGGTCTTACAGGTTCTACAACAATAATACCTTCAAGGCCTACCAGTTTTACTATGGCAGCAACCGCTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096554.12
ENSMUST00000163716.3
ENSMUST00000236135.2