Pregenerated sensors for APBB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000117679Ensembl transcript IDs: ENSMUST00000001415.9, ENSMUST00000237965.2
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCCTGTCACGGCCCTTGGAGCTGCCCACACCCCACACACGGATGTaGACCAGAGGCTGGCAATGGATCAGGCTGTGGTCCAGGGGATTC | + |
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Preference number: 1 (lower is better) Translates to: SLSRPLELPTPHTRM*TRGWQWIRLWSRGF Trigger: GAATCCCCTGGACCACAGCCTGATCCATTGCCAGCCTCTGGTTCACATCCGTGTGTGGGGTGTGGGCAGCTCCAAGGGCCGTGACAGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR GCA 90 bp | TGTCACCCGCAACAAAAGCGAAGTCCCTGTCACGGCCCTTGGAGCTaGCCACACCCCACACACGGATGTGAACCAGAGGCTGGCAATGGA | + |
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Preference number: 1 (lower is better) Translates to: CHPQQKRSPCHGPWS*PHPTHGCEPEAGNG Trigger: TCCATTGCCAGCCTCTGGTTCACATCCGTGTGTGGGGTGTGGGCAGCTCCAAGGGCCGTGACAGGGACTTCGCTTTTGTTGCGGGTGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR CCA 90 bp | GCTGGCAATGGATCAGGCTGTGGTCCAGGGGATTCAGCAGGCTCATaGCATCCTTTTTCAGGATCATCAGCATGTTCTGGCCCTGCTCAC | + |
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Preference number: 1 (lower is better) Translates to: AGNGSGCGPGDSAGS*HPFSGSSACSGPAH Trigger: GTGAGCAGGGCCAGAACATGCTGATGATCCTGAAAAAGGATGCCATGAGCCTGCTGAATCCCCTGGACCACAGCCTGATCCATTGCCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR-3UTR TCA 90 bp | CACCCCACACACGGATGTGAACCAGAGGCTGGCAATGGATCAGGCTGTGGTCCACCCCAGGTACCATCATaGGGCTGGCTCCGGTTTCGG | + |
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Preference number: 2 (lower is better) Translates to: HPTHGCEPEAGNGSGCGPPQVPS*GWLRFR Trigger: CCGAAACCGGAGCCAGCCTCATGATGGTACCTGGGG...TGGACCACAGCCTGATCCATTGCCAGCCTCTGGTTCACATCCGTGTGTGGGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR-3UTR CCA 90 bp | GCAACAAAAGCGAAGTCCCTGTCACGGCCCTTGGAGCTGCCCACACCCCACACAAATACTGCTCTTCCCTaGCGCCAGGTCCTCCTCGGG | + |
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Preference number: 2 (lower is better) Translates to: ATKAKSLSRPLELPTPHTNTALP*RQVLLG Trigger: CCCGAGGAGGACCTGGCGCCAGGGAAGAGCAGTATT...TGTGTGGGGTGTGGGCAGCTCCAAGGGCCGTGACAGGGACTTCGCTTTTGTTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR-3UTR CCA 90 bp | CTCATGGCATCCTTTTTCAGGATCATCAGCATGTTCTGGCCCTGCTCACCCCAGCTCCGGTTTCGGGTCTaGGCCAGCTGCTGGATACAG | + |
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Preference number: 2 (lower is better) Translates to: LMASFFRIISMFWPCSPQLRFRV*ASCWIQ Trigger: CTGTATCCAGCAGCTGGCCCAGACCCGAAACCGGAG...CTGGGGTGAGCAGGGCCAGAACATGCTGATGATCCTGAAAAAGGATGCCATGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR-3UTR CCA 90 bp | AGCATACAGCTGTCTTTGTCACCCGCAACAAAAGCGAAGTCCCTGTCACGGCCCATCATCAGCATGTTCTaGCCCTGCTCACCCCAGGTA | + |
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Preference number: 2 (lower is better) Translates to: SIQLSLSPATKAKSLSRPIISMF*PCSPQV Trigger: TACCTGGGGTGAGCAGGGCCAGAACATGCTGATGAT...GGGCCGTGACAGGGACTTCGCTTTTGTTGCGGGTGACAAAGACAGCTGTATGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGGCTGGCAATGGATCAGGCTGTGGTCCAGGGGATTCAGCAGGCTCATGGCAGCTGGATACAGTTATTaGCAGCAATACTGCTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: RGWQWIRLWSRGFSRLMAAGYSY*QQYCSS Trigger: GGAAGAGCAGTATTGCTGTCAATAACTGTATCCAGC...TGCCATGAGCCTGCTGAATCCCCTGGACCACAGCCTGATCCATTGCCAGCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR-3UTR GCA 90 bp | TCATGGCATCCTTTTTCAGGATCATCAGCATGTTCTGGCCCTGCTCACCCCAGGCGGGTCTGGGCCAGCTaGTGGATACAGTTATTGACA | + |
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Preference number: 2 (lower is better) Translates to: SWHPFSGSSACSGPAHPRRVWAS*WIQLLT Trigger: TGTCAATAACTGTATCCAGCAGCTGGCCCAGACCCG...CCTGGGGTGAGCAGGGCCAGAACATGCTGATGATCCTGAAAAAGGATGCCATGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR-3UTR CCA 90 bp | GTGAAACACATGACATTTGAGCATACAGCTGTCTTTGTCACCCGCAACAAAAGCGTCTGGGCCAGCTGCTaGATACAGTTATTGACAGCA | + |
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Preference number: 2 (lower is better) Translates to: VKHMTFEHTAVFVTRNKSVWASC*IQLLTA Trigger: TGCTGTCAATAACTGTATCCAGCAGCTGGCCCAGAC...GCTTTTGTTGCGGGTGACAAAGACAGCTGTATGCTCAAATGTCATGTGTTTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR-3UTR CCA 90 bp | ATGACATTTGAGCATACAGCTGTCTTTGTCACCCGCAACAAAAGCGAAGTCCCTGATTCAGCAGGCTCATaGCATCCTTTTTCAGGATCA | + |
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Preference number: 2 (lower is better) Translates to: MTFEHTAVFVTRNKSEVPDSAGS*HPFSGS Trigger: TGATCCTGAAAAAGGATGCCATGAGCCTGCTGAATC...AGGGACTTCGCTTTTGTTGCGGGTGACAAAGACAGCTGTATGCTCAAATGTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR TCA 72 bp | CGGCCCTTGGAGCTGCCCACACCCCACACACGGATGTaGACCAGAGGCTGGCAATGGATCAGGCTGTGGTCC | + |
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Preference number: 3 (lower is better) Translates to: RPLELPTPHTRM*TRGWQWIRLWS Trigger: GGACCACAGCCTGATCCATTGCCAGCCTCTGGTTCACATCCGTGTGTGGGGTGTGGGCAGCTCCAAGGGCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR CCA 72 bp | CACCCGCAACAAAAGCGAAGTCCCTGTCACGGCCCTTaGAGCTGCCCACACCCCACACACGGATGTGAACCA | + |
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Preference number: 3 (lower is better) Translates to: HPQQKRSPCHGP*SCPHPTHGCEP Trigger: TGGTTCACATCCGTGTGTGGGGTGTGGGCAGCTCCAAGGGCCGTGACAGGGACTTCGCTTTTGTTGCGGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR GCA 72 bp | ACAGGGGCAAGGAACAAGAGGACCCAAGGAAAGGGGTaGCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: TGARNKRTQGKG*HRPKLQCRASQ Trigger: CTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTGGGTCCTCTTGTTCCTTGCCCCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| 3UTR TCA 72 bp | GGTTTCGGGTCTGGGCCAGCTGCTGGATACAGTTATTaGCAGCAATACTGCTCTTCCCTGGCGCCAGGTCCT | + |
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Preference number: 3 (lower is better) Translates to: GFGSGPAAGYSY*QQYCSSLAPGP Trigger: AGGACCTGGCGCCAGGGAAGAGCAGTATTGCTGTCAATAACTGTATCCAGCAGCTGGCCCAGACCCGAAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR CCA 72 bp | GGATCAGGCTGTGGTCCAGGGGATTCAGCAGGCTCATaGCATCCTTTTTCAGGATCATCAGCATGTTCTGGC | + |
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Preference number: 3 (lower is better) Translates to: GSGCGPGDSAGS*HPFSGSSACSG Trigger: GCCAGAACATGCTGATGATCCTGAAAAAGGATGCCATGAGCCTGCTGAATCCCCTGGACCACAGCCTGATCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| 3UTR-3UTR CAA 90 bp | CACCCCACACACGGATGTGAACCAGAGGCTGGCAATGGATCAGGCTGTGGTCCATGCTGGATACAGTTATaGACAGCAATACTGCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: HPTHGCEPEAGNGSGCGPCWIQL*TAILLF Trigger: GAAGAGCAGTATTGCTGTCAATAACTGTATCCAGCA...TGGACCACAGCCTGATCCATTGCCAGCCTCTGGTTCACATCCGTGTGTGGGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS-3UTR TCA 90 bp | GCAAGGATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAGGCGAGCACGGGCCTaGGCACCCCAGGCCTTACCC | + |
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Preference number: 4 (lower is better) Translates to: ARIRDGQEGKRLQNPRVQRRARA*APQALP Trigger: GGGTAAGGCCTGGGGTGCTCAGGCCCGTGCTCGCCT...CTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGATCCTTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCCCGCTTTCGAGGAGCTaGTCCAGCACCCCCAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSPLSRS*SSTPSP Trigger: GGGGCTGGGGGTGCTGGAGCAGCTCCTCGAAAGCGG...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTTGGAGCTGGTCCGCTTaGGCCGCAGGCGAGCACGGG | + |
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Preference number: 4 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSWSWSA*AAGEHG Trigger: CCCGTGCTCGCCTGCGGCTCAAGCGGACCAGCTCCA...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCGTTGGGCGCTGCCACTaGGTGCTACCGCTGGGTACA | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSVGRCH*VLPLGT Trigger: TGTACCCAGCGGTAGCACTCAGTGGCAGCGCCCAAC...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | GCAAGGATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGCCCCAGGTACCATCATaGGGCTGGCTCCGGTTTCGG | + |
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Preference number: 4 (lower is better) Translates to: ARIRDGQEGKRLQNPRVQPQVPS*GWLRFR Trigger: CCGAAACCGGAGCCAGCCTCATGATGGTACCTGGGG...CTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGATCCTTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | GCAAGGATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGGGCGCTGCCACTGAGTaGTACCGCTGGGTACATGCC | + |
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Preference number: 4 (lower is better) Translates to: ARIRDGQEGKRLQNPRVQGAATE*YRWVHA Trigger: GGCATGTACCCAGCGGTAGCACTCAGTGGCAGCGCC...CTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGATCCTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | CATCATGAGGCTGGCTCCGGTTTCGGGTCTGGGCCAGCTGCTGGATACAGTTATGGCGCTGCCACTGAGTaGTACCGCTGGGTACATGCC | + |
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Preference number: 4 (lower is better) Translates to: HHEAGSGFGSGPAAGYSYGAATE*YRWVHA Trigger: GGCATGTACCCAGCGGTAGCACTCAGTGGCAGCGCC...ATAACTGTATCCAGCAGCTGGCCCAGACCCGAAACCGGAGCCAGCCTCATGATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS-3UTR TCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCCCCCACACACGGATGTaGACCAGAGGCTGGCAATGG | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSPHTRM*TRGWQW Trigger: CCATTGCCAGCCTCTGGTTCACATCCGTGTGTGGGG...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | GCAAGGATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGGCCCAGAGAGCGGACTaGAAAGCACTTAGCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: ARIRDGQEGKRLQNPRVQAQRAD*KALSSW Trigger: CCAGGAGCTAAGTGCTTTGCAGTCCGCTCTCTGGGC...CTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGATCCTTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCACCATGCAGGCGGCTTaGACAGCTTCAGAGAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSTMQAA*TASESP Trigger: GGGACTCTCTGAAGCTGTGCAAGCCGCCTGCATGGT...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCACCAGAGGCTGGCAATaGATCAGGCTGTGGTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSTRGWQ*IRLWSR Trigger: CCTGGACCACAGCCTGATCCATTGCCAGCCTCTGGT...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| 3UTR CAA 72 bp | CGGTTTCGGGTCTGGGCCAGCTGCTGGATACAGTTATaGACAGCAATACTGCTCTTCCCTGGCGCCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: RFRVWASCWIQL*TAILLFPGARS Trigger: GGACCTGGCGCCAGGGAAGAGCAGTATTGCTGTCAATAACTGTATCCAGCAGCTGGCCCAGACCCGAAACCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS-3UTR TCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCAAGCAGCCTCTCCACTaGCTCCTACCCTCTCTGACA | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSKQPLH*LLPSLT Trigger: TGTCAGAGAGGGTAGGAGTCAGTGGAGAGGCTGCTT...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCAATACTGCTCTTCCCTaGCGCCAGGTCCTCCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPANTALP*RQVLLG Trigger: CCCGAGGAGGACCTGGCGCCAGGGAAGAGCAGTATT...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTCTCCGGTTTCGGGTCTaGGCCAGCTGCTGGATACAG | + |
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Preference number: 4 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSLRFRV*ASCWIQ Trigger: CTGTATCCAGCAGCTGGCCCAGACCCGAAACCGGAG...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCGCACCAGCCTCTGCCTaGATAGCATGTGCAGTCATC | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSAPASA*IACAVI Trigger: GATGACTGCACATGCTATCCAGGCAGAGGCTGGTGC...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGGGCACTGCCACAGTaGCTCTTCCTCTGCACCAGC | + |
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Preference number: 4 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSRALPQ*LFLCTS Trigger: GCTGGTGCAGAGGAAGAGCCACTGTGGCAGTGCCCT...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | AGGGGATTCAGCAGGCTCATGGCATCCTTTTTCAGGATCATCAGCATGTTCTGGGTTGGGCGCTGCCACTaGGTGCTACCGCTGGGTACA | + |
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Preference number: 4 (lower is better) Translates to: RGFSRLMASFFRIISMFWVGRCH*VLPLGT Trigger: TGTACCCAGCGGTAGCACTCAGTGGCAGCGCCCAAC...CCAGAACATGCTGATGATCCTGAAAAAGGATGCCATGAGCCTGCTGAATCCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS-3UTR TCA 90 bp | GCAAGGATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGGACTCCTACCCTCTCTaGCAAGATCTGTGCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: ARIRDGQEGKRLQNPRVQDSYPL*QDLCTE Trigger: CTCTGTGCACAGATCTTGTCAGAGAGGGTAGGAGTC...CTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGATCCTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTGAGAGTCCCCCAGCATaGGGCTCGCACCAAAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSESPPA*GSHQKA Trigger: AGCTTTTTGGTGCGAGCCTCATGCTGGGGGACTCTC...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCCAGTGGCTCTTCCTCTaGACCAGCCTCTGCCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPAQWLFL*TSLCLD Trigger: ATCCAGGCAGAGGCTGGTGCAGAGGAAGAGCCACTG...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCATGAGGCCAAAGGTATaGGGATCACGGCCAACACCA | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSMRPKV*GSRPTP Trigger: TGGTGTTGGCCGTGATCCGCATACCTTTGGCCTCAT...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | AAAAGCGAAGTCCCTGTCACGGCCCTTGGAGCTGCCCACACCCCACACACGGATATGAACTGTCCAGGCTaGAGAAAGATCTTCCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: KSEVPVTALGAAHTPHTDMNCPG*RKIFPW Trigger: CCAAGGGAAGATCTTTCTCCAGCCTGGACAGTTCAT...ATCCGTGTGTGGGGTGTGGGCAGCTCCAAGGGCCGTGACAGGGACTTCGCTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS-3UTR CCA 90 bp | GCAAGGATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAGGGGAAATAGGATCTaGGGAACAGCAAGCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: ARIRDGQEGKRLQNPRVQRGNRI*GTASSL Trigger: GAGGCTGCTTGCTGTTCCCCAGATCCTATTTCCCCT...CTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGATCCTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCAGTGCCTCATACTTCTaGGCAGCCTGGCTCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPASASYF*AAWLTA Trigger: TGCAGTGAGCCAGGCTGCTCAGAAGTATGAGGCACT...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCGATCCCCATGTACAGTaGCTCATACTTCTGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSDPHVQ*LILLSS Trigger: GCTGCTCAGAAGTATGAGGCACTGTACATGGGGATC...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | CAACAAAAGCGAAGTCCCTGTCACGGCCCTTGGAGCTGCCCACACCCCACACACACTGAGTGCTACCGCTaGGTACATGCCAATAATAAG | + |
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Preference number: 4 (lower is better) Translates to: QQKRSPCHGPWSCPHPTHTECYR*VHANNK Trigger: CTTATTATTGGCATGTACCCAGCGGTAGCACTCAGT...GTGTGTGGGGTGTGGGCAGCTCCAAGGGCCGTGACAGGGACTTCGCTTTTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS-3UTR GCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCCGGGTCTGGGCCAGCTaGTGGATACAGTTATTGACA | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPARVWAS*WIQLLT Trigger: TGTCAATAACTGTATCCAGCAGCTGGCCCAGACCCG...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | CAAGGAAAGGGGTGCCACAGGCCTAAGTTACAGTGCAGGGCCTCTCAGTCATCCTGCCTGGATAGCATGTaGAGTCATCAGAGAGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: QGKGCHRPKLQCRASQSSCLDSM*SHQRVR Trigger: TCTGACTCTCTGATGACTGCACATGCTATCCAGGCA...GGATGACTGAGAGGCCCTGCACTGTAACTTAGGCCTGTGGCACCCCTTTCCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCATCATCAGCATGTTCTaGCCCTCACCCCAGGTACCA | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPAIISMF*PSPQVP Trigger: TGGTACCTGGGGTGAGGGCCAGAACATGCTGATGAT...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTGTTACTCCGGTTCAATaGACTGTCCAGGCTGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSVTPVQ*TVQAGE Trigger: TTCTCCAGCCTGGACAGTTCATTGAACCGGAGTAAC...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTGAAGGCATCAAGAAATaGGAAGACACCCCGCTTTCG | + |
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Preference number: 4 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSEGIKK*EDTPLS Trigger: CGAAAGCGGGGTGTCTTCTCATTTCTTGATGCCTTC...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCCTCGCACCAAAAAGCTaGACACTGGAAGCTCTGACA | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPALAPKS*TLEALT Trigger: TGTCAGAGCTTCCAGTGTGCAGCTTTTTGGTGCGAG...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTGTCTGGGCCAGCTGCTaGATACAGTTATTGACAGCA | + |
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Preference number: 4 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSVWASC*IQLLTA Trigger: TGCTGTCAATAACTGTATCCAGCAGCTGGCCCAGAC...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | GCAAGGATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGGAGAAGGTTTTAGCCTaGAGGCATCAAGAAATGAGA | + |
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Preference number: 4 (lower is better) Translates to: ARIRDGQEGKRLQNPRVQEKVLA*RHQEMR Trigger: TCTCATTTCTTGATGCCTTCAGGCTAAAACCTTCTC...CTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGATCCTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTATGAACTGTCCAGGCTaGAGAAAGATCTTCCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSMNCPG*RKIFPW Trigger: CCAAGGGAAGATCTTTCTCCAGCCTGGACAGTTCAT...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCGCTGGATACAGTTATTaGCAGCAATACTGCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPAAGYSY*QQYCSS Trigger: GGAAGAGCAGTATTGCTGTCAATAACTGTATCCAGC...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | CATCATGAGGCTGGCTCCGGTTTCGGGTCTGGGCCAGCTGCTGGATACAGTTATCCAATAATAAGTTCCTaGAGCATCACGGATCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: HHEAGSGFGSGPAAGYSYPIISS*SITDLS Trigger: AGAAAGATCCGTGATGCTGCAGGAACTTATTATTGG...ATAACTGTATCCAGCAGCTGGCCCAGACCCGAAACCGGAGCCAGCCTCATGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS-3UTR CCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCACTGAGTGCTACCGCTaGGTACATGCCAATAATAAG | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPATECYR*VHANNK Trigger: CTTATTATTGGCATGTACCCAGCGGTAGCACTCAGT...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCGATTCAGCAGGCTCATaGCATCCTTTTTCAGGATCA | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPADSAGS*HPFSGS Trigger: TGATCCTGAAAAAGGATGCCATGAGCCTGCTGAATC...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR GCA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTACTTGCTATGGCTTTTaGGGGAACATCACAGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSTCYGF*GNITVK Trigger: TTTCACTGTGATGTTCCCGCAAAAGCCATAGCAAGT...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR TCA 90 bp | ATGACATTTGAGCATACAGCTGTCTTTGTCACCCGCAACAAAAGCGAAGTCCCTGTTACTCCGGTTCAATaGACTGTCCAGGCTGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: MTFEHTAVFVTRNKSEVPVTPVQ*TVQAGE Trigger: TTCTCCAGCCTGGACAGTTCATTGAACCGGAGTAAC...AGGGACTTCGCTTTTGTTGCGGGTGACAAAGACAGCTGTATGCTCAAATGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS-3UTR GCA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCCCAATAATAAGTTCCTaGAGCATCACGGATCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: KRLQNPRVQKSREPLYPAPIISS*SITDLS Trigger: AGAAAGATCCGTGATGCTGCAGGAACTTATTATTGG...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS TCA 90 bp | GAGTCCATGGAGCTGGTCCGCTTGAGCCGCAGGCGAGCACGGGCCTaGGCACCCCAGGCCTTACCCCGAGCTGCTGAGGCCACTAGACAC | + |
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Preference number: 5 (lower is better) Translates to: ESMELVRLSRRRARA*APQALPRAAEATRH Trigger: GTGTCTAGTGGCCTCAGCAGCTCGGGGTAAGGCCTGGGGTGCTCAGGCCCGTGCTCGCCTGCGGCTCAAGCGGACCAGCTCCATGGACTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CAA 90 bp | GCCCTTGGAGCTGCCCACACCCCACACACGGATGTGAACCAGAGGCTGGCAATGCTGGTAGCTCCCAGGTaGGGCGCTGCCACTGAGTGC | + |
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Preference number: 5 (lower is better) Translates to: ALGAAHTPHTDVNQRLAMLVAPR*GAATEC Trigger: GCACTCAGTGGCAGCGCCCAACCTGGGAGCTACCAG...CATTGCCAGCCTCTGGTTCACATCCGTGTGTGGGGTGTGGGCAGCTCCAAGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS-3UTR CAA 90 bp | GCAAGGATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGTCCCTGTCACGGCCCTaGGAGCTGCCCACACCCCAC | + |
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Preference number: 5 (lower is better) Translates to: ARIRDGQEGKRLQNPRVQSLSRP*ELPTPH Trigger: GTGGGGTGTGGGCAGCTCCAAGGGCCGTGACAGGGA...CTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGATCCTTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CAA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCATGGAGCTGGTCCGCTaGAGCCGCAGGCGAGCACGG | + |
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Preference number: 5 (lower is better) Translates to: KRLQNPRVQKSREPLYPAMELVR*SRRRAR Trigger: CCGTGCTCGCCTGCGGCTCAAGCGGACCAGCTCCAT...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CAA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCCTGGTAGCTCCCAGGTaGGGCGCTGCCACTGAGTGC | + |
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Preference number: 5 (lower is better) Translates to: KRLQNPRVQKSREPLYPALVAPR*GAATEC Trigger: GCACTCAGTGGCAGCGCCCAACCTGGGAGCTACCAG...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS GCA 90 bp | GGTCCTCTGCACCTGGTAGCTCCCAGGTTGGGCGCTGCCACTGAGTaGTACCGCTGGGTACATGCCAATAATAAGTTCCTGCAGCATCAC | + |
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Preference number: 5 (lower is better) Translates to: GPLHLVAPRLGAATE*YRWVHANNKFLQHH Trigger: GTGATGCTGCAGGAACTTATTATTGGCATGTACCCAGCGGTAGCACTCAGTGGCAGCGCCCAACCTGGGAGCTACCAGGTGCAGAGGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001415.9 ENSMUST00000237965.2 |
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| CDS CCA 90 bp | GCTGGCAATGGATCAGGCTGTGGTCCAGGGGATTCAGCAGGCTCATaGCATCCTTTTTCAGGATCATCAGCATGTTCTGGCCCTCACCCC | + |
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Preference number: 5 (lower is better) Translates to: AGNGSGCGPGDSAGS*HPFSGSSACSGPHP Trigger: GGGGTGAGGGCCAGAACATGCTGATGATCCTGAAAAAGGATGCCATGAGCCTGCTGAATCCCCTGGACCACAGCCTGATCCATTGCCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS GCA 90 bp | AAAGGTTACAAGGCGAACAGGGCACTGCCACAGTGGCTCTTCCTCTaGACCAGCCTCTGCCTGGATAGCATGTGCAGTCATCAGAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: KGYKANRALPQWLFL*TSLCLDSMCSHQRV Trigger: GACTCTCTGATGACTGCACATGCTATCCAGGCAGAGGCTGGTGCAGAGGAAGAGCCACTGTGGCAGTGCCCTGTTCGCCTTGTAACCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS CCA 90 bp | CACCTGGTAGCTCCCAGGTTGGGCGCTGCCACTGAGTGCTACCGCTaGGTACATGCCAATAATAAGTTCCTGCAGCATCACGGATCTTTC | + |
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Preference number: 5 (lower is better) Translates to: HLVAPRLGAATECYR*VHANNKFLQHHGSF Trigger: GAAAGATCCGTGATGCTGCAGGAACTTATTATTGGCATGTACCCAGCGGTAGCACTCAGTGGCAGCGCCCAACCTGGGAGCTACCAGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001415.9 ENSMUST00000237965.2 |
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| CDS-3UTR CAA 90 bp | GCAAGGATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGTCATCATCGCAGTaGACCAGAATGATGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: ARIRDGQEGKRLQNPRVQKSSSQ*TRMMAS Trigger: GCTGGCCATCATTCTGGTCAACTGCGATGATGACTT...CTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGATCCTTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CAA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTGCCCCTGTAGAGCACTaGCTATGGCTTTTGCGGGAA | + |
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Preference number: 5 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSAPVEH*LWLLRE Trigger: TTCCCGCAAAAGCCATAGCAAGTGCTCTACAGGGGC...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CAA 90 bp | ATCAGGGATGGGCAGGAAGGTAAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGCATACAGCTGTCTTaGTCACCCGCAACAAAAGCG | + |
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Preference number: 5 (lower is better) Translates to: IRDGQEGKRLQNPRVQKSSIQLS*SPATKA Trigger: CGCTTTTGTTGCGGGTGACAAAGACAGCTGTATGCT...ACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTTACCTTCCTGCCCATCCCTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CAA 90 bp | AAGAGGCTACAGAACCCTAGGGTCCAGAAGAGTAGAGAGCCTCTTTACCCAGCCTGCTGGATACAGTTATaGACAGCAATACTGCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: KRLQNPRVQKSREPLYPACWIQL*TAILLF Trigger: GAAGAGCAGTATTGCTGTCAATAACTGTATCCAGCA...GGCTGGGTAAAGAGGCTCTCTACTCTTCTGGACCCTAGGGTTCTGTAGCCTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS-3UTR CAA 90 bp | ACAGTGAAACACATGACATTTGAGCATACAGCTGTCTTTGTCACCCGCAACAAAAAGTCATCATCGCAGTaGACCAGAATGATGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: TVKHMTFEHTAVFVTRNKKSSSQ*TRMMAS Trigger: GCTGGCCATCATTCTGGTCAACTGCGATGATGACTT...TTTGTTGCGGGTGACAAAGACAGCTGTATGCTCAAATGTCATGTGTTTCACTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237965.2 |
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| CDS TCA 72 bp | GAGCTGGTCCGCTTGAGCCGCAGGCGAGCACGGGCCTaGGCACCCCAGGCCTTACCCCGAGCTGCTGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: ELVRLSRRRARA*APQALPRAAEA Trigger: GGCCTCAGCAGCTCGGGGTAAGGCCTGGGGTGCTCAGGCCCGTGCTCGCCTGCGGCTCAAGCGGACCAGCTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS CAA 72 bp | CCCTTCCTGGGTCCTCTGCACCTGGTAGCTCCCAGGTaGGGCGCTGCCACTGAGTGCTACCGCTGGGTACAT | + |
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Preference number: 6 (lower is better) Translates to: PFLGPLHLVAPR*GAATECYRWVH Trigger: ATGTACCCAGCGGTAGCACTCAGTGGCAGCGCCCAACCTGGGAGCTACCAGGTGCAGAGGACCCAGGAAGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001415.9 ENSMUST00000237965.2 |
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| CDS CAA 90 bp | CCTCTGTTCCCCTTCCTGGGTCCTCTGCACCTGGTAGCTCCCAGGTaGGGCGCTGCCACTGAGTGCTACCGCTGGGTACATGCCAATAAT | + |
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Preference number: 6 (lower is better) Translates to: PLFPFLGPLHLVAPR*GAATECYRWVHANN Trigger: ATTATTGGCATGTACCCAGCGGTAGCACTCAGTGGCAGCGCCCAACCTGGGAGCTACCAGGTGCAGAGGACCCAGGAAGGGGAACAGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001415.9 ENSMUST00000237965.2 |
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| CDS GCA 72 bp | AAGGCGAACAGGGCACTGCCACAGTGGCTCTTCCTCTaGACCAGCCTCTGCCTGGATAGCATGTGCAGTCAT | + |
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Preference number: 6 (lower is better) Translates to: KANRALPQWLFL*TSLCLDSMCSH Trigger: ATGACTGCACATGCTATCCAGGCAGAGGCTGGTGCAGAGGAAGAGCCACTGTGGCAGTGCCCTGTTCGCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS GCA 72 bp | CACCTGGTAGCTCCCAGGTTGGGCGCTGCCACTGAGTaGTACCGCTGGGTACATGCCAATAATAAGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: HLVAPRLGAATE*YRWVHANNKFL Trigger: CAGGAACTTATTATTGGCATGTACCCAGCGGTAGCACTCAGTGGCAGCGCCCAACCTGGGAGCTACCAGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001415.9 ENSMUST00000237965.2 |
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| CDS GCA 72 bp | CCAACACCAATAAAGGTTACAAGGCGAACAGGGCACTaGCACAGTGGCTCTTCCTCTGCACCAGCCTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PTPIKVTRRTGH*HSGSSSAPASA Trigger: GGCAGAGGCTGGTGCAGAGGAAGAGCCACTGTGGCAGTGCCCTGTTCGCCTTGTAACCTTTATTGGTGTTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS CCA 72 bp | GCTCCCAGGTTGGGCGCTGCCACTGAGTGCTACCGCTaGGTACATGCCAATAATAAGTTCCTGCAGCATCAC | + |
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Preference number: 6 (lower is better) Translates to: APRLGAATECYR*VHANNKFLQHH Trigger: GTGATGCTGCAGGAACTTATTATTGGCATGTACCCAGCGGTAGCACTCAGTGGCAGCGCCCAACCTGGGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001415.9 ENSMUST00000237965.2 |
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| CDS CCA 72 bp | TGCCACAGTGGCTCTTCCTCTGCACCAGCCTCTGCCTaGATAGCATGTGCAGTCATCAGAGAGTCAGACACA | + |
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Preference number: 6 (lower is better) Translates to: CHSGSSSAPASA*IACAVIRESDT Trigger: TGTGTCTGACTCTCTGATGACTGCACATGCTATCCAGGCAGAGGCTGGTGCAGAGGAAGAGCCACTGTGGCA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS TCA 72 bp | CTGCACACTGGAAGCTCTGACAACCAAGATCAGCGATaGGGCCAAAGGTATGCGGATCACGGCCAACACCAA | + |
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Preference number: 6 (lower is better) Translates to: LHTGSSDNQDQR*GQRYADHGQHQ Trigger: TTGGTGTTGGCCGTGATCCGCATACCTTTGGCCTCATCGCTGATCTTGGTTGTCAGAGCTTCCAGTGTGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS CCA 72 bp | AGATCTGTGCACAGAGCCCCTGTAGAGCACTTGCTATaGCTTTTGCGGGAACATCACAGTGAAACACATGAC | + |
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Preference number: 6 (lower is better) Translates to: RSVHRAPVEHLL*LLREHHSETHD Trigger: GTCATGTGTTTCACTGTGATGTTCCCGCAAAAGCCATAGCAAGTGCTCTACAGGGGCTCTGTGCACAGATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS CAA 72 bp | CTGACAAGATCTGTGCACAGAGCCCCTGTAGAGCACTaGCTATGGCTTTTGCGGGAACATCACAGTGAAACA | + |
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Preference number: 6 (lower is better) Translates to: LTRSVHRAPVEH*LWLLREHHSET Trigger: TGTTTCACTGTGATGTTCCCGCAAAAGCCATAGCAAGTGCTCTACAGGGGCTCTGTGCACAGATCTTGTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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| CDS TCA 72 bp | CTTTTGCGGGAACATCACAGTGAAACACATGACATTTaGGCATACAGCTGTCTTTGTCACCCGCAACAAAAG | + |
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Preference number: 6 (lower is better) Translates to: LLREHHSETHDI*AYSCLCHPQQK Trigger: CTTTTGTTGCGGGTGACAAAGACAGCTGTATGCTCAAATGTCATGTGTTTCACTGTGATGTTCCCGCAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001415.9 |
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