RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APBB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029207

Ensembl transcript IDs: ENSMUST00000087256.12, ENSMUST00000159512.8, ENSMUST00000159786.8, ENSMUST00000160063.5, ENSMUST00000160103.8, ENSMUST00000160870.8, ENSMUST00000161879.8, ENSMUST00000162349.8, ENSMUST00000162366.8, ENSMUST00000162382.8

Found 866 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AATCTGCTGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTGGCCTaGCAACCAAGCACTTCTGATACCGCAACATGCAGGCAGCCTGGA +
Preference number: 1 (lower is better)
Translates to: NLLAGAGAGLSAKVA*QPSTSDTATCRQPG
Trigger: TCCAGGCTGCCTGCATGTTGCGGTATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCAGCAGATT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 90 bp GGGGGCCGGACTTTCTGCGAAGGTGGCCTGGCAACCAAGCACTTCTaGTACCGCAACATGCAGGCAGCCTGGACAGCTTCTGACACATTG +
Preference number: 1 (lower is better)
Translates to: GGRTFCEGGLATKHF*YRNMQAAWTASDTL
Trigger: CAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTTGCGGTATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR GCA 90 bp GGTCTGCAGAAATGTCTCAGCTGGCACCCGTTACTTCAGCTAGTGTaGAAGCCGGCACCGAGGGTACCACCTTCTCTCAAGCGACATCAC +
Preference number: 1 (lower is better)
Translates to: GLQKCLSWHPLLQLV*KPAPRVPPSLKRHH
Trigger: GTGATGTCGCTTGAGAGAAGGTGGTACCCTCGGTGCCGGCTTGCACACTAGCTGAAGTAACGGGTGCCAGCTGAGACATTTCTGCAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 90 bp CACTGTTCAGGGTGTCCATGCCGACAGGTCTGTCTACAGGTAACATaGCCAGGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTG +
Preference number: 1 (lower is better)
Translates to: HCSGCPCRQVCLQVT*PGTARGTSAPAPSL
Trigger: CAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACAGACCTGTCGGCATGGACACCCTGAACAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR GCA 90 bp TCTGCATCCCACTCAGTCGCTCCATCACGTTCTGCGGTGGTTAAGTaGCACAGCCGGGAGTGTTCCTACCACAGGCAACTTAATCTCTGG +
Preference number: 1 (lower is better)
Translates to: SASHSVAPSRSAVVK*HSRECSYHRQLNLW
Trigger: CCAGAGATTAAGTTGCCTGTGGTAGGAACACTCCCGGCTGTGGCACTTAACCACCGCAGAACGTGATGGAGCGACTGAGTGGGATGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR CCA 90 bp CACTCAAAGCGCTGGTTCCCAGTGTCCATGATGAAGGCGAATGTGTaGACATCCTTCCCGACACCCATGAAGGACAGGAACCGCACTCGA +
Preference number: 1 (lower is better)
Translates to: HSKRWFPVSMMKANV*TSFPTPMKDRNRTR
Trigger: TCGAGTGCGGTTCCTGTCCTTCATGGGTGTCGGGAAGGATGTCCACACATTCGCCTTCATCATGGACACTGGGAACCAGCGCTTTGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 90 bp GTCGGCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGGATaGCGTCATGAGATTTTCTATGGCACTGTTCAGGGTGTCCATGCC +
Preference number: 1 (lower is better)
Translates to: VGHVHVHRRPVLLAG*RHEIFYGTVQGVHA
Trigger: GGCATGGACACCCTGAACAGTGCCATAGAAAATCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGCCGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR GCA 90 bp GTGTCCATGCCGACAGGTCTGTCTACAGGTAACATGCCCAGGTACTaGACGCGGAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAAA +
Preference number: 1 (lower is better)
Translates to: VSMPTGLSTGNMPRY*TRNFCTSSVFGVGK
Trigger: TTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACAGACCTGTCGGCATGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 90 bp CGTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGGATGACGTCATaGGATTTTCTATGGCACTGTTCAGGGTGTCCATGCCGACAGGTC +
Preference number: 1 (lower is better)
Translates to: RSCSPKASPPCWMTS*DFLWHCSGCPCRQV
Trigger: GACCTGTCGGCATGGACACCCTGAACAGTGCCATAGAAAATCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACATGAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 90 bp GCTGTAGATGTGAACCAGTGTCCATGTGTCAGAGAGCTCGGTGGCTaGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAG +
Preference number: 1 (lower is better)
Translates to: AVDVNQCPCVRELGG*CLYRRQQPSFVNQQ
Trigger: CTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTCTGACACATGGACACTGGTTCACATCTACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CCA 90 bp TTCTCTGGGCACAATAAGGTTTTCGGTCTGCAGAAATGTCTCAGCTaGCACCCGTTACTTCAGCTAGTGTGCAAGCCGGCACCGAGGGTA +
Preference number: 1 (lower is better)
Translates to: FSGHNKVFGLQKCLS*HPLLQLVCKPAPRV
Trigger: TACCCTCGGTGCCGGCTTGCACACTAGCTGAAGTAACGGGTGCCAGCTGAGACATTTCTGCAGACCGAAAACCTTATTGTGCCCAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR TCA 90 bp GATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGTaGCAGATCCAGTCAAGAGGACAGCAAAATGAACTTGGGCACCGT +
Preference number: 1 (lower is better)
Translates to: DPKSGQSAEGPQVGL*QIQSRGQQNELGHR
Trigger: ACGGTGCCCAAGTTCATTTTGCTGTCCTCTTGACTGGATCTGTCACAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR TCA 90 bp CAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTTaGTCCTCAGGTAATGGTGTCAGACTCCTCCAGACCTGGGCTGCT +
Preference number: 1 (lower is better)
Translates to: QLSGRPGIGFFSVAT*SSGNGVRLLQTWAA
Trigger: AGCAGCCCAGGTCTGGAGGAGTCTGACACCATTACCTGAGGATCAAGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR GCA 90 bp GGTCTGTCTACAGGTAACATGCCCAGGTACTGCACGCGGAACTTCTaGACCAGCTCCGTCTTTGGTGTTGGAAAATCTTGCAAAGGGACA +
Preference number: 1 (lower is better)
Translates to: GLSTGNMPRYCTRNF*TSSVFGVGKSCKGT
Trigger: TGTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 90 bp ACAGCTTCTGACACATTGGCTGCGTTAGGCTCACACCAGAACACATaGCACTCAAAGCGCTGGTTCCCAGTGTCCATGATGAAGGCGAAT +
Preference number: 1 (lower is better)
Translates to: TASDTLAALGSHQNT*HSKRWFPVSMMKAN
Trigger: ATTCGCCTTCATCATGGACACTGGGAACCAGCGCTTTGAGTGCCATGTGTTCTGGTGTGAGCCTAACGCAGCCAATGTGTCAGAAGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 90 bp ACCCCAAGTTGGCTTGTGACAGATCCAGTCAAGAGGACAGCAAAATaGACTTGGGCACCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTA +
Preference number: 1 (lower is better)
Translates to: TPSWLVTDPVKRTAK*TWAPFVQGCSVSWL
Trigger: TAGCCAACTAACACTGCATCCTTGGACGAACGGTGCCCAAGTTCATTTTGCTGTCCTCTTGACTGGATCTGTCACAAGCCAACTTGGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR TCA 90 bp TTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCAAAGTGCTaGGGGACCCCAAGTTGGCTTGTGACAGATCCAGTCAAGAGGACA +
Preference number: 1 (lower is better)
Translates to: FSGICYSGSEIRAKC*GTPSWLVTDPVKRT
Trigger: TGTCCTCTTGACTGGATCTGTCACAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CCA 90 bp TCTTTGGTGTTGGAAAATCTTGCAAAGGGACATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCTTTGGCGTTCT +
Preference number: 1 (lower is better)
Translates to: SLVLENLAKGHRDSY*SSPVRSCRPVLWRS
Trigger: AGAACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 90 bp ACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTaGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGT +
Preference number: 1 (lower is better)
Translates to: TWWRQDEVTCLSNTV*LKIKSLETKHRQLS
Trigger: ACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR TCA 90 bp ACAGGCAACTTAATCTCTGGAAAGTCTGAGACGGGACCAGGCTGCTaGGGACAGACATTCTTCCTCTATGACATATTTAAGGAACACAGT +
Preference number: 1 (lower is better)
Translates to: TGNLISGKSETGPGC*GQTFFLYDIFKEHS
Trigger: ACTGTGTTCCTTAAATATGTCATAGAGGAAGAATGTCTGTCCTCAGCAGCCTGGTCCCGTCTCAGACTTTCCAGAGATTAAGTTGCCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR TCA 90 bp AGACAAATAAACAAAACAGTGGCTCTAGTTAGCTATGGGTGGCCTTaGGTCCAGGCAGAGACGAAGGGCATGTGGCTCTGTGTATATTTT +
Preference number: 1 (lower is better)
Translates to: RQINKTVALVSYGWP*VQAETKGMWLCVYF
Trigger: AAAATATACACAGAGCCACATGCCCTTCGTCTCTGCCTGGACTCAAGGCCACCCATAGCTAACTAGAGCCACTGTTTTGTTTATTTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR CCA 90 bp AATCTTGGAGCAGATTTCGTGGAGACTTGTGGCAATGGCTTTTGCTaGTGTGTCACATCGAAACACATGGCATTTCAGAATCCTTGTGTC +
Preference number: 1 (lower is better)
Translates to: NLGADFVETCGNGFC*CVTSKHMAFQNPCV
Trigger: GACACAAGGATTCTGAAATGCCATGTGTTTCGATGTGACACACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCTGCTCCAAGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR GCA 90 bp CATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATaGTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACA +
Preference number: 1 (lower is better)
Translates to: HAPLYITWWRQDEVT*LSNTVWLKIKSLET
Trigger: TGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CCA 90 bp AGAGAGCTTTTGGTTTCATTAAACTGTGCTGATGTCAGGGAGACGTaGTTTCTGGAGTCTTGTGTTGCAATGTTCATAAAGCGAATGTGC +
Preference number: 1 (lower is better)
Translates to: RELLVSLNCADVRET*FLESCVAMFIKRMC
Trigger: GCACATTCGCTTTATGAACATTGCAACACAAGACTCCAGAAACCACGTCTCCCTGACATCAGCACAGTTTAATGAAACCAAAAGCTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 90 bp ATCGTGAACATGGCTGCCTGTTTACCGAACCACGGATATAAAGAATaGATAGGTAACGAAAGTATCACAGAGACCTCAGGTAAAACATCA +
Preference number: 1 (lower is better)
Translates to: IVNMAACLPNHGYKE*IGNESITETSGKTS
Trigger: TGATGTTTTACCTGAGGTCTCTGTGATACTTTCGTTACCTATGCATTCTTTATATCCGTGGTTCGGTAAACAGGCAGCCATGTTCACGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR TCA 90 bp GGGCATGTGGCTCTGTGTATATTTTTGATGAAATCACACGTGTTGTaGAGATATAAAAACGAAGCACCGCACAGTGCCTTAGTCTACAAA +
Preference number: 1 (lower is better)
Translates to: GHVALCIFLMKSHVL*RYKNEAPHSALVYK
Trigger: TTTGTAGACTAAGGCACTGTGCGGTGCTTCGTTTTTATATCTTCACAACACGTGTGATTTCATCAAAAATATACACAGAGCCACATGCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 90 bp AACATTAAACACATAAATTCAGGGAAATTACAACTTAAGATTTGTTaGCATGGACAACAGATGATGGACAGACAGCTTCCTGGACAAAGA +
Preference number: 1 (lower is better)
Translates to: NIKHINSGKLQLKIC*HGQQMMDRQLPGQR
Trigger: TCTTTGTCCAGGAAGCTGTCTGTCCATCATCTGTTGTCCATGGCAACAAATCTTAAGTTGTAATTTCCCTGAATTTATGTGTTTAATGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp TGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTGGCCTGGCAACCAAGCACTTTGTCTACAGGTAACATaGCCAGGTACTGCACGCGGA +
Preference number: 2 (lower is better)
Translates to: WRGRGPDFLRRWPGNQALCLQVT*PGTARG
Trigger: TCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACA...AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR TCA 90 bp GGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCAGTGCCAACCAAAGCATCGGCAACTaGGTGGAAGGCCAGGTATCG +
Preference number: 2 (lower is better)
Translates to: GSGRCGCLAMSSPPCSANQSIGN*VEGQVS
Trigger: CGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTG...GTTGGCACTGCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp GGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCAGTGCCAACCATCGTGAACATGGCTaGCTGTTTACCGAACCACGG +
Preference number: 2 (lower is better)
Translates to: GSGRCGCLAMSSPPCSANHREHG*LFTEPR
Trigger: CCGTGGTTCGGTAAACAGGCAGCCATGTTCACGATG...GTTGGCACTGCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp CGAAGGTGGCCTGGCAACCAAGCACTTCTGATACCGCAACATGCAGGCAGCCTGGGAGCTGCAGGCCAGTaGTTTGGCGTTCTTCCGTTC +
Preference number: 2 (lower is better)
Translates to: RRWPGNQALLIPQHAGSLGAAGQ*FGVLPF
Trigger: GAACGGAAGAACGCCAAAGCACTGGCCTGCAGCTCC...CAGGCTGCCTGCATGTTGCGGTATCAGAAGTGCTTGGTTGCCAGGCCACCTTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR GCA 90 bp CTTCGGGTCACTGAATCTGCTGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTATTCTTCTGTGTGTGTaGTCGGAAGTCCTGTTCACA +
Preference number: 2 (lower is better)
Translates to: LRVTESAGGGGGRTFCEGILLCV*SEVLFT
Trigger: TGTGAACAGGACTTCCGAGCACACACACAGAAGAAT...ACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCAGCAGATTCAGTGACCCGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CCA 90 bp CTTCGGGTCACTGAATCTGCTGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTCTCCGTCTTTGGTGTTaGAAAATCTTGCAAAGGGAC +
Preference number: 2 (lower is better)
Translates to: LRVTESAGGGGGRTFCEGLRLWC*KILQRD
Trigger: GTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAG...ACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCAGCAGATTCAGTGACCCGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR TCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTAACGGGACCAGGCTGCTaGGGACAGACATTCTTCCTC +
Preference number: 2 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLTGPGC*GQTFFL
Trigger: GAGGAAGAATGTCTGTCCTCAGCAGCCTGGTCCCGT...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTCAAAGCATCGGCAACTaGGTGGAAGGCCAGGTATCG +
Preference number: 2 (lower is better)
Translates to: LARKGVAAFFCVCARKSCQSIGN*VEGQVS
Trigger: CGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTG...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGCTCACTGGGGAGTTCTaGGATTGCCTGACAGTATTC +
Preference number: 2 (lower is better)
Translates to: IPACCTRAVPLGHTASMLLTGEF*DCLTVF
Trigger: GAATACTGTCAGGCAATCTCAGAACTCCCCAGTGAG...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCTGCCAACCTTTCCCCTaGCACTTTTCAGGGACTAAA +
Preference number: 2 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCCQPFP*HFSGTK
Trigger: TTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGCA...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp GTGGACATCCTTCCCGACACCCATGAAGGACAGGAACCGCACTCGACACTCCACCCTCTTTATATCACATaGTGGCGGCAAGACGAGGTC +
Preference number: 2 (lower is better)
Translates to: VDILPDTHEGQEPHSTLHPLYIT*WRQDEV
Trigger: GACCTCGTCTTGCCGCCACCATGTGATATAAAGAGG...GTGGAGTGTCGAGTGCGGTTCCTGTCCTTCATGGGTGTCGGGAAGGATGTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CAA 90 bp ACAGTGGCGTCGGCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTaGCTGGATGACGTCATGAGATTTTCTATGGCACTGTTCAGGGTG +
Preference number: 2 (lower is better)
Translates to: TVASATFMFTEGQSS*LDDVMRFSMALFRV
Trigger: CACCCTGAACAGTGCCATAGAAAATCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGCCGACGCCACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR TCA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCAGAGAGGCAGGAACATaGTATGTGGGAGTCACTATA +
Preference number: 2 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCREAGT*YVGVTI
Trigger: TATAGTGACTCCCACATATCATGTTCCTGCCTCTCT...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp CCCGACACCCATGAAGGACAGGAACCGCACTCGACACTCCACCAAGACCTCCTCTGTGGCAATGGCTTTTaGTGGTGTGTCACATCGAAA +
Preference number: 2 (lower is better)
Translates to: PDTHEGQEPHSTLHQDLLCGNGF*WCVTSK
Trigger: TTTCGATGTGACACACCAGCAAAAGCCATTGCCACA...GAGGAGGTCTTGGTGGAGTGTCGAGTGCGGTTCCTGTCCTTCATGGGTGTCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CAA 90 bp CTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTaGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAA +
Preference number: 2 (lower is better)
Translates to: LSPDTFQGLNTDPCM*YKSRATGPHCQHAE
Trigger: TTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR CAA 90 bp TTCTGTTTCAAAGTGTCAATGAGGGATAAGACCCCTCGTTTCACATaGGTCGTGACTCTTCGGGTCACTGAATCTGCTGGCGGGGGCGGG +
Preference number: 2 (lower is better)
Translates to: FCFKVSMRDKTPRFT*VVTLRVTESAGGGG
Trigger: CCCGCCCCCGCCAGCAGATTCAGTGACCCGAAGAGTCACGACCAATGTGAAACGAGGGGTCTTATCCCTCATTGACACTTTGAAACAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR TCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTCAAAGCATCGGCAACTaGGTGGAAGGCCAGGTATCG +
Preference number: 2 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCQSIGN*VEGQVS
Trigger: CGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTG...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGAGACGGCATGTCGGCTaGCCCCTAGATGCTTCCAAG +
Preference number: 2 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLRRHVG*PLDASK
Trigger: CTTGGAAGCATCTAGGGGGCAGCCGACATGCCGTCT...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCCTTTATATCACATGGTaGCGGCAAGACGAGGTCACA +
Preference number: 2 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGLYITW*RQDEVT
Trigger: TGTGACCTCGTCTTGCCGCCACCATGTGATATAAAG...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp GATGACAGTCACAGTGGCGTCGGCCACGTTCATGTTCACCGAAGGCCAGTCCTCCACCAGCTCCGTCTTTaGTGTTGGAAAATCTTGCAA +
Preference number: 2 (lower is better)
Translates to: DDSHSGVGHVHVHRRPVLHQLRL*CWKILQ
Trigger: TTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTG...GAGGACTGGCCTTCGGTGAACATGAACGTGGCCGACGCCACTGTGACTGTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CCA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAACATGCAGGCAGCCTaGACAGCTTCTGACACATTG +
Preference number: 2 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHNMQAA*TASDTL
Trigger: CAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTT...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR TCA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGCAAAGCATCGGCAACTaGGTGGAAGGCCAGGTATCG +
Preference number: 2 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWQSIGN*VEGQVS
Trigger: CGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTG...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCACAGGCTCAGTGTTATaGAAAACTAAAACCCAAAGG +
Preference number: 2 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCTGSVL*KTKTQR
Trigger: CCTTTGGGTTTTAGTTTTTCATAACACTGAGCCTGT...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGCCCCAGAGTCCTTTGTaGAGGGTCCTCCTGATTGCA +
Preference number: 2 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLPQSPL*RVLLIA
Trigger: TGCAATCAGGAGGACCCTTCACAAAGGACTCTGGGG...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTAATTCTTCTGTGTGTGTaGTCGGAAGTCCTGTTCACA +
Preference number: 2 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLILLCV*SEVLFT
Trigger: TGTGAACAGGACTTCCGAGCACACACACAGAAGAAT...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTCTTTATATCACATGGTaGCGGCAAGACGAGGTCACA +
Preference number: 2 (lower is better)
Translates to: LARKGVAAFFCVCARKSCLYITW*RQDEVT
Trigger: TGTGACCTCGTCTTGCCGCCACCATGTGATATAAAG...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTGGATGCAGTGTTAGTTaGCTAGGAAGGGTGTGGCCG +
Preference number: 2 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATGCSVS*LGRVWP
Trigger: CGGCCACACCCTTCCTAGCCAACTAACACTGCATCC...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGGGATGCAGTGTTAGTTaGCTAGGAAGGGTGTGGCCG +
Preference number: 2 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLGCSVS*LGRVWP
Trigger: CGGCCACACCCTTCCTAGCCAACTAACACTGCATCC...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR CAA 90 bp AGACTCATATTGGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCTTaGGCGTTCTTCCGTTCAGCCATAATCTTGGAGCAGATTTCGTGG +
Preference number: 2 (lower is better)
Translates to: RLILVLSCKELQASA*AFFRSAIILEQISW
Trigger: CCACGAAATCTGCTCCAAGATTATGGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGCTTTATATCACATGGTaGCGGCAAGACGAGGTCACA +
Preference number: 2 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLLYITW*RQDEVT
Trigger: TGTGACCTCGTCTTGCCGCCACCATGTGATATAAAG...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CAA 90 bp GTCTTTGGTGTTGGAAAATCTTGCAAAGGGACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCTTTGGCGTTC +
Preference number: 2 (lower is better)
Translates to: VFGVGKSCKGTSRLI*VLSCKELQASALAF
Trigger: GAACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR TCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGACCTTCTGCTGCTCATaGTGTAACTTACAGGAAAGA +
Preference number: 2 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRTFCCS*CNLQER
Trigger: TCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGT...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACACCTTCTGCTGCTCATaGTGTAACTTACAGGAAAGA +
Preference number: 2 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHTFCCS*CNLQER
Trigger: TCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGT...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGAACACAGTCCTGGACTaGGAAAGGACAACGGGCTTA +
Preference number: 2 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLNTVLD*ERTTGL
Trigger: TAAGCCCGTTGTCCTTTCTCAGTCCAGGACTGTGTT...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTACAACAGAAATGTGACTaGAAACCATCACCAAACCAC +
Preference number: 2 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLQQKCD*KPSPNH
Trigger: GTGGTTTGGTGATGGTTTGCAGTCACATTTCTGTTG...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp AGTCCAGGCAGAGACGAAGGGCATGTGGCTCTGTGTATATTTTTGATGAAATCAAGACGGCATGTCGGCTaGCCCCTAGATGCTTCCAAG +
Preference number: 2 (lower is better)
Translates to: SPGRDEGHVALCIFLMKSRRHVG*PLDASK
Trigger: CTTGGAAGCATCTAGGGGGCAGCCGACATGCCGTCT...TGATTTCATCAAAAATATACACAGAGCCACATGCCCTTCGTCTCTGCCTGGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp CAGAACACATGGCACTCAAAGCGCTGGTTCCCAGTGTCCATGATGAAGGCGAATCTTTATATCACATGGTaGCGGCAAGACGAGGTCACA +
Preference number: 2 (lower is better)
Translates to: QNTWHSKRWFPVSMMKANLYITW*RQDEVT
Trigger: TGTGACCTCGTCTTGCCGCCACCATGTGATATAAAG...ATTCGCCTTCATCATGGACACTGGGAACCAGCGCTTTGAGTGCCATGTGTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CCA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTCCTCTTTATATCACATaGTGGCGGCAAGACGAGGTC +
Preference number: 2 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATPLYIT*WRQDEV
Trigger: GACCTCGTCTTGCCGCCACCATGTGATATAAAGAGG...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCGTTACAGCAATTCAGTaGTATCTGTTACTCAGGATC +
Preference number: 2 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGVTAIQ*YLLLRI
Trigger: GATCCTGAGTAACAGATACCACTGAATTGCTGTAAC...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CAA 90 bp TTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTaGGCTTGTGACAGATCCAGTCAAGAGGACAGCAAAATGAACTTG +
Preference number: 2 (lower is better)
Translates to: LLRIRNQGKVLRDPK*ACDRSSQEDSKMNL
Trigger: CAAGTTCATTTTGCTGTCCTCTTGACTGGATCTGTCACAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGCAAAGCATCGGCAACTaGGTGGAAGGCCAGGTATCG +
Preference number: 2 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMQSIGN*VEGQVS
Trigger: CGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTG...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTACAGGCTCAGTGTTATaGAAAACTAAAACCCAAAGG +
Preference number: 2 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSTGSVL*KTKTQR
Trigger: CCTTTGGGTTTTAGTTTTTCATAACACTGAGCCTGT...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTATTCTTCTGTGTGTGTaGTCGGAAGTCCTGTTCACA +
Preference number: 2 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCILLCV*SEVLFT
Trigger: TGTGAACAGGACTTCCGAGCACACACACAGAAGAAT...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATACCTCTTTATATCACATaGTGGCGGCAAGACGAGGTC +
Preference number: 2 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIPLYIT*WRQDEV
Trigger: GACCTCGTCTTGCCGCCACCATGTGATATAAAGAGG...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGCCTAATGTCCCTTCGTaGAGTAAGACAGACAGACAA +
Preference number: 2 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLPNVPS*SKTDRQ
Trigger: TTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGG...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp GAACCGCACTCGACACTCCACCAAGACCTCCTCTTCATTCTTTTCACTGATGACGGTGTTGGAAAATCTTaGAAAGGGACATCGAGACTC +
Preference number: 2 (lower is better)
Translates to: EPHSTLHQDLLFILFTDDGVGKS*KGTSRL
Trigger: GAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACC...GTCATCAGTGAAAAGAATGAAGAGGAGGTCTTGGTGGAGTGTCGAGTGCGGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CCA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCACCTCTTTATATCACATaGTGGCGGCAAGACGAGGTC +
Preference number: 2 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSPLYIT*WRQDEV
Trigger: GACCTCGTCTTGCCGCCACCATGTGATATAAAGAGG...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGGGATGCAGTGTTAGTTaGCTAGGAAGGGTGTGGCCG +
Preference number: 2 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKGCSVS*LGRVWP
Trigger: CGGCCACACCCTTCCTAGCCAACTAACACTGCATCC...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGTTTAGTGTAGCTACTTaGTCCTCAGGTAATGGTGTC +
Preference number: 2 (lower is better)
Translates to: DKISGDKASATEWKARYRFSVAT*SSGNGV
Trigger: GACACCATTACCTGAGGATCAAGTAGCTACACTAAA...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp AGTCCAGGCAGAGACGAAGGGCATGTGGCTCTGTGTATATTTTTGATGAAATCATGGTGCTCTGTATTCTaGTTTCCTCAGCGAGGTCAG +
Preference number: 2 (lower is better)
Translates to: SPGRDEGHVALCIFLMKSWCSVF*FPQRGQ
Trigger: CTGACCTCGCTGAGGAAATCAGAATACAGAGCACCA...TGATTTCATCAAAAATATACACAGAGCCACATGCCCTTCGTCTCTGCCTGGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGGCAATGGCTTTTGCTaGTGTGTCACATCGAAACAC +
Preference number: 2 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMGNGFC*CVTSKH
Trigger: GTGTTTCGATGTGACACACCAGCAAAAGCCATTGCC...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR TCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAACCTTCTGCTGCTCATaGTGTAACTTACAGGAAAGA +
Preference number: 2 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKITFCCS*CNLQER
Trigger: TCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGT...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTGGTGCTCTGTATTCTaGTTTCCTCAGCGAGGTCAG +
Preference number: 2 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSWCSVF*FPQRGQ
Trigger: CTGACCTCGCTGAGGAAATCAGAATACAGAGCACCA...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CAGGTAAAACATCAGCATCCTCTCACAGACAAATACAAACAGACTTCCATACATCCCCAGAGTCCTTTGTaGAGGGTCCTCCTGATTGCA +
Preference number: 2 (lower is better)
Translates to: QVKHQHPLTDKYKQTSIHPQSPL*RVLLIA
Trigger: TGCAATCAGGAGGACCCTTCACAAAGGACTCTGGGG...ATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGCTGATGTTTTACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACTCTCCTGTAAGGAGCTaGAGGCCAGTGCTTTGGCGT +
Preference number: 2 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYSPVRS*RPVLWR
Trigger: ACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGA...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTCTTTATATCACATGGTaGCGGCAAGACGAGGTCACA +
Preference number: 2 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGLYITW*RQDEVT
Trigger: TGTGACCTCGTCTTGCCGCCACCATGTGATATAAAG...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATTTAGTGTAGCTACTTaGTCCTCAGGTAATGGTGTC +
Preference number: 2 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSFSVAT*SSGNGV
Trigger: GACACCATTACCTGAGGATCAAGTAGCTACACTAAA...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCTTTAGTGTAGCTACTTaGTCCTCAGGTAATGGTGTC +
Preference number: 2 (lower is better)
Translates to: LVKDKISGDKASATEWKAFSVAT*SSGNGV
Trigger: GACACCATTACCTGAGGATCAAGTAGCTACACTAAA...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGATCCCAAATGCGTCATaGCTCTGTAAATCTCTTTTT +
Preference number: 2 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLIPNAS*LCKSLF
Trigger: AAAAAGAGATTTACAGAGTCATGACGCATTTGGGAT...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCCTCACTGGGGAGTTCTaGGATTGCCTGACAGTATTC +
Preference number: 2 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGLTGEF*DCLTVF
Trigger: GAATACTGTCAGGCAATCTCAGAACTCCCCAGTGAG...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGAACACAGTCCTGGACTaGGAAAGGACAACGGGCTTA +
Preference number: 2 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMNTVLD*ERTTGL
Trigger: TAAGCCCGTTGTCCTTTCTCAGTCCAGGACTGTGTT...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACATTCTTCTGTGTGTGTaGTCGGAAGTCCTGTTCACA +
Preference number: 2 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINILLCV*SEVLFT
Trigger: TGTGAACAGGACTTCCGAGCACACACACAGAAGAAT...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTACCGTTCGTCCAAGGATaGAGTGTTAGTTGGCTAGGA +
Preference number: 2 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVPFVQG*SVSWLG
Trigger: TCCTAGCCAACTAACACTGCATCCTTGGACGAACGG...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGCCTCTTTATATCACATaGTGGCGGCAAGACGAGGTC +
Preference number: 2 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMPLYIT*WRQDEV
Trigger: GACCTCGTCTTGCCGCCACCATGTGATATAAAGAGG...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAGTTACAGCAATTCAGTaGTATCTGTTACTCAGGATC +
Preference number: 2 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIVTAIQ*YLLLRI
Trigger: GATCCTGAGTAACAGATACCACTGAATTGCTGTAAC...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGACAGGCTCAGTGTTATaGAAAACTAAAACCCAAAGG +
Preference number: 2 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMTGSVL*KTKTQR
Trigger: CCTTTGGGTTTTAGTTTTTCATAACACTGAGCCTGT...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGTGTAAGGCAGAAGTTTaGAATACGTTCCATCCCAAA +
Preference number: 2 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMCKAEV*NTFHPK
Trigger: TTTGGGATGGAACGTATTTCAAACTTCTGCCTTACA...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTTCTAACACAGTCCTGGACTaGGAAAGGACAACGGGCTTA +
Preference number: 2 (lower is better)
Translates to: AAEIKIRDRDNGILNSFSNTVLD*ERTTGL
Trigger: TAAGCCCGTTGTCCTTTCTCAGTCCAGGACTGTGTT...AGAAAAACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACTCTCATGAACTTTGGTaGCTTCCTAAGTCACTTCGT +
Preference number: 2 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINSHELW*LPKSLR
Trigger: ACGAAGTGACTTAGGAAGCCACCAAAGTTCATGAGA...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTAGTGTAGCTACTTaGTCCTCAGGTAATGGTGTC +
Preference number: 2 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSFSVAT*SSGNGV
Trigger: GACACCATTACCTGAGGATCAAGTAGCTACACTAAA...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGACAGGCTCAGTGTTATaGAAAACTAAAACCCAAAGG +
Preference number: 2 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMTGSVL*KTKTQR
Trigger: CCTTTGGGTTTTAGTTTTTCATAACACTGAGCCTGT...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACCTTCTGCTGCTCATaGTGTAACTTACAGGAAAGA +
Preference number: 2 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVTFCCS*CNLQER
Trigger: TCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGT...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACACAGGCTCAGTGTTATaGAAAACTAAAACCCAAAGG +
Preference number: 2 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDTGSVL*KTKTQR
Trigger: CCTTTGGGTTTTAGTTTTTCATAACACTGAGCCTGT...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp ATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCTTGTGGTGCTCTGTATTCATCCCAAATGCGTCATaGCTCTGTAAATCTCTTTTT +
Preference number: 2 (lower is better)
Translates to: MNFGGFLSHFVSLWCSVFIPNAS*LCKSLF
Trigger: AAAAAGAGATTTACAGAGTCATGACGCATTTGGGAT...GAATACAGAGCACCACAAGCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACTGTAAGGCAGAAGTTTaGAATACGTTCCATCCCAAA +
Preference number: 2 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDCKAEV*NTFHPK
Trigger: TTTGGGATGGAACGTATTTCAAACTTCTGCCTTACA...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTACTGTAAAGTTAGGATaGCAGCGAAAAATTCCAGCT +
Preference number: 2 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSTVKLG*QRKIPA
Trigger: AGCTGGAATTTTTCGCTGGCATCCTAACTTTACAGT...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGACTGTAAAGTTAGGATaGCAGCGAAAAATTCCAGCT +
Preference number: 2 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKTVKLG*QRKIPA
Trigger: AGCTGGAATTTTTCGCTGGCATCCTAACTTTACAGT...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp GCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTTCTGGCTCTCATGAACTTTaGTGGCTTCCTAAGTCACTT +
Preference number: 2 (lower is better)
Translates to: AAEIKIRDRDNGILNSFSGSHEL*WLPKSL
Trigger: AAGTGACTTAGGAAGCCACCAAAGTTCATGAGAGCC...AGAAAAACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACTTTAGTGTAGCTACTTaGTCCTCAGGTAATGGTGTC +
Preference number: 2 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYFSVAT*SSGNGV
Trigger: GACACCATTACCTGAGGATCAAGTAGCTACACTAAA...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR TCA 90 bp CAGGTAAAACATCAGCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACCTTCTGCTGCTCATaGTGTAACTTACAGGAAAGA +
Preference number: 2 (lower is better)
Translates to: QVKHQHPLTDKYKQTSIHTFCCS*CNLQER
Trigger: TCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGT...ATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGCTGATGTTTTACCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR GCA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGACTGTAAAGTTAGGATaGCAGCGAAAAATTCCAGCT +
Preference number: 2 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMTVKLG*QRKIPA
Trigger: AGCTGGAATTTTTCGCTGGCATCCTAACTTTACAGT...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAGTTACAGCAATTCAGTaGTATCTGTTACTCAGGATC +
Preference number: 2 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVVTAIQ*YLLLRI
Trigger: GATCCTGAGTAACAGATACCACTGAATTGCTGTAAC...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR-3UTR CAA 90 bp TGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTGGCCTGGCAACCAAGCACTTCTGCAGGCCAGTGCTTaGGCGTTCTTCCGTTCAGCC +
Preference number: 3 (lower is better)
Translates to: WRGRGPDFLRRWPGNQALLQASA*AFFRSA
Trigger: GGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCAG...AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 72 bp GCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTGGCCTaGCAACCAAGCACTTCTGATACCGCAACATGCAGG +
Preference number: 3 (lower is better)
Translates to: AGAGAGLSAKVA*QPSTSDTATCR
Trigger: CCTGCATGTTGCGGTATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 72 bp TGCTGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTaGCCTGGCAACCAAGCACTTCTGATACCGCAACAT +
Preference number: 3 (lower is better)
Translates to: CWRGRGPDFLRR*PGNQALLIPQH
Trigger: ATGTTGCGGTATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCAGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 72 bp CCCTCGTTTCACATTGGTCGTGACTCTTCGGGTCACTaGATCTGCTGGCGGGGGCGGGGGCCGGACTTTCTG +
Preference number: 3 (lower is better)
Translates to: PSFHIGRDSSGH*ICWRGRGPDFL
Trigger: CAGAAAGTCCGGCCCCCGCCCCCGCCAGCAGATTCAGTGACCCGAAGAGTCACGACCAATGTGAAACGAGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CAA 90 bp GAATCTGCTGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTGGCCTGGCAACCAGATTTCGTGGAGACTaGTGGCAATGGCTTTTGCTG +
Preference number: 3 (lower is better)
Translates to: ESAGGGGGRTFCEGGLATRFRGD*WQWLLL
Trigger: CAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCT...GGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCAGCAGATTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR GCA 72 bp GGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTaGAGTGCCAACCTTTCCCCTGACACTTTTCAGGGA +
Preference number: 3 (lower is better)
Translates to: GRCGCLAMSSPP*SANLSPDTFQG
Trigger: TCCCTGAAAAGTGTCAGGGGAAAGGTTGGCACTGCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 72 bp GGGTGTCCATGCCGACAGGTCTGTCTACAGGTAACATaGCCAGGTACTGCACGCGGAACTTCTGCACCAGCT +
Preference number: 3 (lower is better)
Translates to: GCPCRQVCLQVT*PGTARGTSAPA
Trigger: AGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACAGACCTGTCGGCATGGACACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR GCA 72 bp TACAAAGTAGAGGTCTTCGCCAGACGGCATGTCGGCTaGCCCCTAGATGCTTCCAAGGGGCACGCAGATAAG +
Preference number: 3 (lower is better)
Translates to: YKVEVFARRHVG*PLDASKGHADK
Trigger: CTTATCTGCGTGCCCCTTGGAAGCATCTAGGGGGCAGCCGACATGCCGTCTGGCGAAGACCTCTACTTTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 72 bp CCGACAGGTCTGTCTACAGGTAACATGCCCAGGTACTaGACGCGGAACTTCTGCACCAGCTCCGTCTTTGGT +
Preference number: 3 (lower is better)
Translates to: PTGLSTGNMPRY*TRNFCTSSVFG
Trigger: ACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACAGACCTGTCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 72 bp TTGCCATGGACAACAGATGATGGACAGACAGCTTCCTaGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGG +
Preference number: 3 (lower is better)
Translates to: LPWTTDDGQTAS*TKSRERLGQWR
Trigger: CCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCCAGGAAGCTGTCTGTCCATCATCTGTTGTCCATGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CAA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTGAAGGCCAGTCCTCCTaGCTGGATGACGTCATGAGA +
Preference number: 3 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSEGQSS*LDDVMR
Trigger: TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTC...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 72 bp GTATTCCTGTTCACTGTGTGGCCCCAGAGTCCTTTGTaGAGGGTCCTCCTGATTGCACGGAGGAGGCATACG +
Preference number: 3 (lower is better)
Translates to: VFLFTVWPQSPL*RVLLIARRRHT
Trigger: CGTATGCCTCCTCCGTGCAATCAGGAGGACCCTTCACAAAGGACTCTGGGGCCACACAGTGAACAGGAATAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR TCA 72 bp CTGATACCGCAACATGCAGGCAGCCTGGACAGCTTCTaGCACATTGGCTGCGTTAGGCTCACACCAGAACAC +
Preference number: 3 (lower is better)
Translates to: LIPQHAGSLDSF*HIGCVRLTPEH
Trigger: GTGTTCTGGTGTGAGCCTAACGCAGCCAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTTGCGGTATCAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 72 bp CGCTGGTTCCCAGTGTCCATGATGAAGGCGAATGTGTaGACATCCTTCCCGACACCCATGAAGGACAGGAAC +
Preference number: 3 (lower is better)
Translates to: RWFPVSMMKANV*TSFPTPMKDRN
Trigger: GTTCCTGTCCTTCATGGGTGTCGGGAAGGATGTCCACACATTCGCCTTCATCATGGACACTGGGAACCAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 72 bp CTGTGTGGCCCCAGAGTCCTTTGTGAAGGGTCCTCCTaGTTGCACGGAGGAGGCATACGCGGTAAAAGTTTT +
Preference number: 3 (lower is better)
Translates to: LCGPRVLCEGSS*LHGGGIRGKSF
Trigger: AAAACTTTTACCGCGTATGCCTCCTCCGTGCAATCAGGAGGACCCTTCACAAAGGACTCTGGGGCCACACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 72 bp TCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTaGATGTTGTACAAGAGCCGTGCCACTGGGCCACAC +
Preference number: 3 (lower is better)
Translates to: SPDTFQGLNTDP*MLYKSRATGPH
Trigger: GTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 72 bp CATCGAGACTCATATTGGTCCTCTCCTGTAAGGAGCTaGAGGCCAGTGCTTTGGCGTTCTTCCGTTCAGCCA +
Preference number: 3 (lower is better)
Translates to: HRDSYWSSPVRS*RPVLWRSSVQP
Trigger: TGGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 72 bp GTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTaGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCT +
Preference number: 3 (lower is better)
Translates to: VQGCSVSWLGRV*PHSSVCVLGSP
Trigger: AGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CCA 72 bp GACACATTGGCTGCGTTAGGCTCACACCAGAACACATaGCACTCAAAGCGCTGGTTCCCAGTGTCCATGATG +
Preference number: 3 (lower is better)
Translates to: DTLAALGSHQNT*HSKRWFPVSMM
Trigger: CATCATGGACACTGGGAACCAGCGCTTTGAGTGCCATGTGTTCTGGTGTGAGCCTAACGCAGCCAATGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 72 bp AACAAAACAGTGGCTCTAGTTAGCTATGGGTGGCCTTaGGTCCAGGCAGAGACGAAGGGCATGTGGCTCTGT +
Preference number: 3 (lower is better)
Translates to: NKTVALVSYGWP*VQAETKGMWLC
Trigger: ACAGAGCCACATGCCCTTCGTCTCTGCCTGGACTCAAGGCCACCCATAGCTAACTAGAGCCACTGTTTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR TCA 72 bp TCACCGAAGGCCAGTCCTCCTTGCTGGATGACGTCATaGGATTTTCTATGGCACTGTTCAGGGTGTCCATGC +
Preference number: 3 (lower is better)
Translates to: SPKASPPCWMTS*DFLWHCSGCPC
Trigger: GCATGGACACCCTGAACAGTGCCATAGAAAATCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR GCA 72 bp ACAGGTAACATGCCCAGGTACTGCACGCGGAACTTCTaGACCAGCTCCGTCTTTGGTGTTGGAAAATCTTGC +
Preference number: 3 (lower is better)
Translates to: TGNMPRYCTRNF*TSSVFGVGKSC
Trigger: GCAAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 72 bp CACGGAGGAGGCATACGCGGTAAAAGTTTTGAGATGTaGGTCGTGATCCTGGCTCTCATGAACTTTGGTGGC +
Preference number: 3 (lower is better)
Translates to: HGGGIRGKSFEM*VVILALMNFGG
Trigger: GCCACCAAAGTTCATGAGAGCCAGGATCACGACCCACATCTCAAAACTTTTACCGCGTATGCCTCCTCCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR CCA 72 bp TTAGGCTCACACCAGAACACATGGCACTCAAAGCGCTaGTTCCCAGTGTCCATGATGAAGGCGAATGTGTGG +
Preference number: 3 (lower is better)
Translates to: LGSHQNTWHSKR*FPVSMMKANVW
Trigger: CCACACATTCGCCTTCATCATGGACACTGGGAACCAGCGCTTTGAGTGCCATGTGTTCTGGTGTGAGCCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 72 bp GGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTTaGTCCTCAGGTAATGGTGTCAGACTCCTCCAGACC +
Preference number: 3 (lower is better)
Translates to: GRPGIGFFSVAT*SSGNGVRLLQT
Trigger: GGTCTGGAGGAGTCTGACACCATTACCTGAGGATCAAGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR TCA 72 bp ATCTGTTACTCAGGATCCGAAATCAGGGCAAAGTGCTaGGGGACCCCAAGTTGGCTTGTGACAGATCCAGTC +
Preference number: 3 (lower is better)
Translates to: ICYSGSEIRAKC*GTPSWLVTDPV
Trigger: GACTGGATCTGTCACAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAACAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR TCA 72 bp GATGTCTTCACCGCCTTGCAGTGCCAACCTTTCCCCTaGCACTTTTCAGGGACTAAACACAGATCCCTGCAT +
Preference number: 3 (lower is better)
Translates to: DVFTALQCQPFP*HFSGTKHRSLH
Trigger: ATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGCACTGCAAGGCGGTGAAGACATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR CCA 72 bp CACAATAAGGTTTTCGGTCTGCAGAAATGTCTCAGCTaGCACCCGTTACTTCAGCTAGTGTGCAAGCCGGCA +
Preference number: 3 (lower is better)
Translates to: HNKVFGLQKCLS*HPLLQLVCKPA
Trigger: TGCCGGCTTGCACACTAGCTGAAGTAACGGGTGCCAGCTGAGACATTTCTGCAGACCGAAAACCTTATTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR CCA 72 bp GTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTaGTGTTGGAAAATCTTGCAAAGGGACATCGAGACT +
Preference number: 3 (lower is better)
Translates to: VLHAELLHQLRL*CWKILQRDIET
Trigger: AGTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CAA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTAAAAAATGAAAAGGGTTaGGGTAGAGACTGCCTATCG +
Preference number: 3 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLKNEKG*GRDCLS
Trigger: CGATAGGCAGTCTCTACCCAAACCCTTTTCATTTTT...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR TCA 72 bp TGTTCCTACCACAGGCAACTTAATCTCTGGAAAGTCTaGGACGGGACCAGGCTGCTGAGGACAGACATTCTT +
Preference number: 3 (lower is better)
Translates to: CSYHRQLNLWKV*DGTRLLRTDIL
Trigger: AAGAATGTCTGTCCTCAGCAGCCTGGTCCCGTCTCAGACTTTCCAGAGATTAAGTTGCCTGTGGTAGGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR TCA 72 bp GTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGGATaGCGTCATGAGATTTTCTATGGCACTGTTCAGGGT +
Preference number: 3 (lower is better)
Translates to: VHVHRRPVLLAG*RHEIFYGTVQG
Trigger: ACCCTGAACAGTGCCATAGAAAATCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACATGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR GCA 72 bp GGAGCAGATTTCGTGGAGACTTGTGGCAATGGCTTTTaGTGGTGTGTCACATCGAAACACATGGCATTTCAG +
Preference number: 3 (lower is better)
Translates to: GADFVETCGNGF*WCVTSKHMAFQ
Trigger: CTGAAATGCCATGTGTTTCGATGTGACACACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCTGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 72 bp TTGGAAAATCTTGCAAAGGGACATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCTT +
Preference number: 3 (lower is better)
Translates to: LENLAKGHRDSY*SSPVRSCRPVL
Trigger: AAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CAA 90 bp CTTTGGTGTTGGAAAATCTTGCAAAGGGACATCGAGACTCATATTGGTCCTCTCGGCATTTCAGAATCCTaGTGTCCTTGTCTCTCGCCA +
Preference number: 3 (lower is better)
Translates to: LWCWKILQRDIETHIGPLGISES*CPCLSP
Trigger: TGGCGAGAGACAAGGACACAAGGATTCTGAAATGCC...GAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CAA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAG +
Preference number: 3 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMTSRLI*VLSCKE
Trigger: CTCCTTACAGGAGAGGACCAATATGAGTCTCGATGT...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR-3UTR CAA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGCCAACTAGAGAGCTTTaGGTTTCATTAAACTGTGCT +
Preference number: 3 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLPTREL*VSLNCA
Trigger: AGCACAGTTTAATGAAACCAAAAGCTCTCTAGTTGG...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR-3UTR CAA 90 bp CTTTGGTGTTGGAAAATCTTGCAAAGGGACATCGAGACTCATATTGGTCCTCTCCGTTCAGCCATAATCTaGGAGCAGATTTCGTGGAGA +
Preference number: 3 (lower is better)
Translates to: LWCWKILQRDIETHIGPLRSAII*EQISWR
Trigger: TCTCCACGAAATCTGCTCCAAGATTATGGCTGAACG...GAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CCA 72 bp ACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTaGTATCTGTTACTCAGGATCCGAAATCAGGGCAAA +
Preference number: 3 (lower is better)
Translates to: TQRCHPIVTAIQ*YLLLRIRNQGK
Trigger: TTTGCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CCA 72 bp GCAGATTTCGTGGAGACTTGTGGCAATGGCTTTTGCTaGTGTGTCACATCGAAACACATGGCATTTCAGAAT +
Preference number: 3 (lower is better)
Translates to: ADFVETCGNGFC*CVTSKHMAFQN
Trigger: ATTCTGAAATGCCATGTGTTTCGATGTGACACACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR TCA 72 bp TTAATCTCTGGAAAGTCTGAGACGGGACCAGGCTGCTaGGGACAGACATTCTTCCTCTATGACATATTTAAG +
Preference number: 3 (lower is better)
Translates to: LISGKSETGPGC*GQTFFLYDIFK
Trigger: CTTAAATATGTCATAGAGGAAGAATGTCTGTCCTCAGCAGCCTGGTCCCGTCTCAGACTTTCCAGAGATTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 72 bp CTCTCAAGCGACATCACTTTTACTGTAAAGTTAGGATaGCAGCGAAAAATTCCAGCTTCTCTGCATCCCACT +
Preference number: 3 (lower is better)
Translates to: LSSDITFTVKLG*QRKIPASLHPT
Trigger: AGTGGGATGCAGAGAAGCTGGAATTTTTCGCTGGCATCCTAACTTTACAGTAAAAGTGATGTCGCTTGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 72 bp ATGGCTGCCTGTTTACCGAACCACGGATATAAAGAATaGATAGGTAACGAAAGTATCACAGAGACCTCAGGT +
Preference number: 3 (lower is better)
Translates to: MAACLPNHGYKE*IGNESITETSG
Trigger: ACCTGAGGTCTCTGTGATACTTTCGTTACCTATGCATTCTTTATATCCGTGGTTCGGTAAACAGGCAGCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR TCA 72 bp TTCTCTAGCTGCATTGTACAGTGTAAGGCAGAAGTTTaGAATACGTTCCATCCCAAATGCGTCATGACTCTG +
Preference number: 3 (lower is better)
Translates to: FSSCIVQCKAEV*NTFHPKCVMTL
Trigger: CAGAGTCATGACGCATTTGGGATGGAACGTATTTCAAACTTCTGCCTTACACTGTACAATGCAGCTAGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR TCA 72 bp CACCAAACCACCTTTCAGGCGATGGATATAGTTCACTaGGTTACTTTAAGACCTGGATACAAGGACATCATA +
Preference number: 3 (lower is better)
Translates to: HQTTFQAMDIVH*VTLRPGYKDII
Trigger: TATGATGTCCTTGTATCCAGGTCTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 72 bp CTTTATATCACATGGTGGCGGCAAGACGAGGTCACATaGTTGTCTAACACTGTCTGGTTAAAGATAAAATCT +
Preference number: 3 (lower is better)
Translates to: LYITWWRQDEVT*LSNTVWLKIKS
Trigger: AGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR TCA 72 bp GCTCTGTGTATATTTTTGATGAAATCACACGTGTTGTaGAGATATAAAAACGAAGCACCGCACAGTGCCTTA +
Preference number: 3 (lower is better)
Translates to: ALCIFLMKSHVL*RYKNEAPHSAL
Trigger: TAAGGCACTGTGCGGTGCTTCGTTTTTATATCTTCACAACACGTGTGATTTCATCAAAAATATACACAGAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR GCA 72 bp CACATAAATTCAGGGAAATTACAACTTAAGATTTGTTaGCATGGACAACAGATGATGGACAGACAGCTTCCT +
Preference number: 3 (lower is better)
Translates to: HINSGKLQLKIC*HGQQMMDRQLP
Trigger: AGGAAGCTGTCTGTCCATCATCTGTTGTCCATGGCAACAAATCTTAAGTTGTAATTTCCCTGAATTTATGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCAGTGCCAACGACTCTTCGGGTCACTaGATCTGCTGGCGGGGGCGG +
Preference number: 4 (lower is better)
Translates to: GSGRCGCLAMSSPPCSANDSSGH*ICWRGR
Trigger: CCGCCCCCGCCAGCAGATTCAGTGACCCGAAGAGTC...GTTGGCACTGCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTGGCCTGGCAACCAAGCACTTCTCGGATGTTCACGATaGGCTGGGAGTGTAACACGG +
Preference number: 4 (lower is better)
Translates to: WRGRGPDFLRRWPGNQALLGCSR*AGSVTR
Trigger: CCGTGTTACACTCCCAGCCCATCGTGAACATCCGAG...AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp GAATCTGCTGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTGGCCTGGCAACCTACTTGGCCATCCTCTaGGCTGGATTGGGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: ESAGGGGGRTFCEGGLATYLAIL*AGLGFV
Trigger: AACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTA...GGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCAGCAGATTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp AGGTGGCCTGGCAACCAAGCACTTCTGATACCGCAACATGCAGGCAGCCTGGACTCCTCTCCAACCCCTTaGCAGGGGCCCAGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: RWPGNQALLIPQHAGSLDSSPTP*QGPRFC
Trigger: GCAGAACCTGGGCCCCTGCCAAGGGGTTGGAGAGGA...GTCCAGGCTGCCTGCATGTTGCGGTATCAGAAGTGCTTGGTTGCCAGGCCACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: IPACCTRAVPLGHTASMLGEALS*DSVVQL
Trigger: CAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCC...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGCTGCTGCCCCTGTTCTaGAGCCTTGCGGAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: IPACCTRAVPLGHTASMLLLPLF*SLAELV
Trigger: AACCAGCTCCGCAAGGCTGCAGAACAGGGGCAGCAG...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCTTGTTGGGGTCCTGCTaGCCCTGTTCTGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCLLGSC*PCSAAL
Trigger: CAAGGCTGCAGAACAGGGGCAGCAGGACCCCAACAA...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCTCCTCTCCAACCCCTTaGCAGGGGCCCAGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTSSPTP*QGPRFC
Trigger: GCAGAACCTGGGCCCCTGCCAAGGGGTTGGAGAGGA...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTTCGGGTCACTGAATCTGCTGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTTCTTGGTCTCTGGGCTaGACGATACTGTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: LRVTESAGGGGGRTFCEGSWSLG*TILWLL
Trigger: AAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGA...ACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCAGCAGATTCAGTGACCCGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp GCACTGTTCAGGGTGTCCATGCCGACAGGTCTGTCTACAGGTAACATGCCCAGGGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: ALFRVSMPTGLSTGNMPRGEALS*DSVVQL
Trigger: CAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCC...CCTGGGCATGTTACCTGTAGACAGACCTGTCGGCATGGACACCCTGAACAGTGC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTGEALS*DSVVQL
Trigger: CAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCC...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGGCCGTGGAGATCTGCTaGGATGGAGACAGGCCGTTC +
Preference number: 4 (lower is better)
Translates to: IPACCTRAVPLGHTASMLAVEIC*DGDRPF
Trigger: GAACGGCCTGTCTCCATCCCAGCAGATCTCCACGGC...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCCAAAATCTCACAGCCTaGAGACTCCTGTGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCQNLTA*RLLWVG
Trigger: CCCCACCCACAGGAGTCTTCAGGCTGTGAGATTTTG...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTACCTTCCCGACACCCATaGAGGACAGGAACCGCACTC +
Preference number: 4 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLPSRHP*RTGTAL
Trigger: GAGTGCGGTTCCTGTCCTTCATGGGTGTCGGGAAGG...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTCACTGATGACAGTCACAGTGGCGTCGGCCACGTTCATGTTCACCGAAGGCCACAGGGGCTGTACAGCTaGATCCGAGAGGCCCATGGC +
Preference number: 4 (lower is better)
Translates to: FTDDSHSGVGHVHVHRRPQGLYS*IREAHG
Trigger: GCCATGGGCCTCTCGGATCCAGCTGTACAGCCCCTG...TGGCCTTCGGTGAACATGAACGTGGCCGACGCCACTGTGACTGTCATCAGTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTAATTCCCAATGACTACTaGGGCCTGGCCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLIPNDY*GLAWAR
Trigger: CCTGGCCCAGGCCAGGCCCCAGTAGTCATTGGGAAT...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCATTCCCAATGACTACTaGGGCCTGGCCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGIPNDY*GLAWAR
Trigger: CCTGGCCCAGGCCAGGCCCCAGTAGTCATTGGGAAT...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTCACAGTGGCGTCGGCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGGGATTCCTCGTCACTTaGTGCCAGGTTCTGGATCCG +
Preference number: 4 (lower is better)
Translates to: VTVASATFMFTEGQSSLLGFLVT*CQVLDP
Trigger: CGGATCCAGAACCTGGCACCAAGTGACGAGGAATCC...CAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGCCGACGCCACTGTGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRGEALS*DSVVQL
Trigger: CAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCC...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCCTCGGATGTTCACGATaGGCTGGGAGTGTAACACGG +
Preference number: 4 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCLGCSR*AGSVTR
Trigger: CCGTGTTACACTCCCAGCCCATCGTGAACATCCGAG...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTCACAGTGGCGTCGGCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGATCTGCTGTTTCATCTaGGGAGCTGGGGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: VTVASATFMFTEGQSSLLICCFI*GAGGGT
Trigger: AGTGCCTCCCCCAGCTCCCCAGATGAAACAGCAGAT...CAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGCCGACGCCACTGTGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGGTCGGATGCAGTTGTTaGCAGCGACACTGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: IPACCTRAVPLGHTASMLVGCSC*QRHCSS
Trigger: GGAAGAGCAGTGTCGCTGTCAACAACTGCATCCGAC...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTCTGCTGCCCCTGTTCTaGAGCCTTGCGGAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: LARKGVAAFFCVCARKSCLLPLF*SLAELV
Trigger: AACCAGCTCCGCAAGGCTGCAGAACAGGGGCAGCAG...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGCAGGGGCTGTACAGCTaGATCCGAGAGGCCCATGGC +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLQGLYS*IREAHG
Trigger: GCCATGGGCCTCTCGGATCCAGCTGTACAGCCCCTG...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGATTCCCAATGACTACTaGGGCCTGGCCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRIPNDY*GLAWAR
Trigger: CCTGGCCCAGGCCAGGCCCCAGTAGTCATTGGGAAT...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTTTCATCTGGGGAGCTaGGGGAGGCACTGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGFHLGS*GRHCLG
Trigger: CCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAA...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCTCTGCGAAGGTGGCCTaGCAACCAAGCACTTCTGAT +
Preference number: 4 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCSAKVA*QPSTSD
Trigger: ATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGA...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGCCTCATTCTCTGGGGTaGGCGATGGCGTTACAGAAC +
Preference number: 4 (lower is better)
Translates to: IPACCTRAVPLGHTASMLPHSLG*AMALQN
Trigger: GTTCTGTAACGCCATCGCCCACCCCAGAGAATGAGG...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCACTGTTCAGGGTGTCCATGCCGACAGGTCTGTCTACAGGTAACATGCCCAGGGTCGGATGCAGTTGTTaGCAGCGACACTGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: ALFRVSMPTGLSTGNMPRVGCSC*QRHCSS
Trigger: GGAAGAGCAGTGTCGCTGTCAACAACTGCATCCGAC...CCTGGGCATGTTACCTGTAGACAGACCTGTCGGCATGGACACCCTGAACAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR GCA 90 bp ACAGGTAACATGCCCAGGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTTTGTTGGGGTCCTGCTaGCCCTGTTCTGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: TGNMPRYCTRNFCTSSVFLLGSC*PCSAAL
Trigger: CAAGGCTGCAGAACAGGGGCAGCAGGACCCCAACAA...AAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR GCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTTGTTGGGGTCCTGCTaGCCCTGTTCTGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: LARKGVAAFFCVCARKSCLLGSC*PCSAAL
Trigger: CAAGGCTGCAGAACAGGGGCAGCAGGACCCCAACAA...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACTTCTTGTTGGGGTCCTaGTGCCCCTGTTCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHFLLGS*CPCSAA
Trigger: GGCTGCAGAACAGGGGCAGCAGGACCCCAACAAGAA...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTTCTTGTTGGGGTCCTaGTGCCCCTGTTCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSFLLGS*CPCSAA
Trigger: GGCTGCAGAACAGGGGCAGCAGGACCCCAACAAGAA...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTTCTTGTTGGGGTCCTaGTGCCCCTGTTCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: LARKGVAAFFCVCARKSCFLLGS*CPCSAA
Trigger: GGCTGCAGAACAGGGGCAGCAGGACCCCAACAAGAA...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCTCTCCTGTAAGGAGCTaGAGGCCAGTGCTTTGGCGT +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTSPVRS*RPVLWR
Trigger: ACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGA...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTATCTCCTGTAAGGAGCTaGAGGCCAGTGCTTTGGCGT +
Preference number: 4 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLSPVRS*RPVLWR
Trigger: ACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGA...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGAAGGTGGCCTGGCAACCAAGCACTTCTGATACCGCAACATGCAGGCAGCCTGATTGAGGGTATTTGGTaGTGTGGCTGGGCTGTTCCG +
Preference number: 4 (lower is better)
Translates to: RRWPGNQALLIPQHAGSLIEGIW*CGWAVP
Trigger: CGGAACAGCCCAGCCACACCACCAAATACCCTCAAT...CAGGCTGCCTGCATGTTGCGGTATCAGAAGTGCTTGGTTGCCAGGCCACCTTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp GCCCAGGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAAGGCTGGACGATACTGTaGCTACTTGGCCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: AQVLHAELLHQLRLWCWKGWTIL*LLGHPL
Trigger: CAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCC...TTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTACTTGGTGCCAGGTTCTaGATCCGATGGAGGGCACAG +
Preference number: 4 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLLGARF*IRWRAQ
Trigger: CTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAG...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGGATGACGTCATGAGACTTGGTGCCAGGTTCTaGATCCGATGGAGGGCACAG +
Preference number: 4 (lower is better)
Translates to: ATFMFTEGQSSLLDDVMRLGARF*IRWRAQ
Trigger: CTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAG...TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCGGATTCCTCGTCACTTaGTGCCAGGTTCTGGATCCG +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTGFLVT*CQVLDP
Trigger: CGGATCCAGAACCTGGCACCAAGTGACGAGGAATCC...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLGEALS*DSVVQL
Trigger: CAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCC...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCGGAGATCTGCTGGGATaGAGACAGGCCGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTGDLLG*RQAVPI
Trigger: AATGGGAACGGCCTGTCTCCATCCCAGCAGATCTCC...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGGCCGTGGAGATCTGCTaGGATGGAGACAGGCCGTTC +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLAVEIC*DGDRPF
Trigger: GAACGGCCTGTCTCCATCCCAGCAGATCTCCACGGC...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CAA 72 bp CGCAACATGCAGGCAGCCTGGACAGCTTCTGACACATaGGCTGCGTTAGGCTCACACCAGAACACATGGCAC +
Preference number: 4 (lower is better)
Translates to: RNMQAAWTASDT*AALGSHQNTWH
Trigger: GTGCCATGTGTTCTGGTGTGAGCCTAACGCAGCCAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTTGCG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTACAAGGTGCCAACACCTaGGTCAGCTGGAAGTACTTC +
Preference number: 4 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLQGANT*VSWKYF
Trigger: GAAGTACTTCCAGCTGACTCAGGTGTTGGCACCTTG...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GTGGACATCCTTCCCGACACCCATGAAGGACAGGAACCGCACTCGACACTCCACAGGCCCATGGCCGCCTaGATATTAGTCAGTGCATAT +
Preference number: 4 (lower is better)
Translates to: VDILPDTHEGQEPHSTLHRPMAA*ILVSAY
Trigger: ATATGCACTGACTAATATTCAGGCGGCCATGGGCCT...GTGGAGTGTCGAGTGCGGTTCCTGTCCTTCATGGGTGTCGGGAAGGATGTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTCAAAATCTCACAGCCTaGAGACTCCTGTGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: LARKGVAAFFCVCARKSCQNLTA*RLLWVG
Trigger: CCCCACCCACAGGAGTCTTCAGGCTGTGAGATTTTG...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CAGAACACATGGCACTCAAAGCGCTGGTTCCCAGTGTCCATGATGAAGGCGAATTGGGGTCCACCAGGCTaGGCATGTCGTTTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: QNTWHSKRWFPVSMMKANWGPPG*ACRFPG
Trigger: GCCTGGAAAACGACATGCTCAGCCTGGTGGACCCCA...ATTCGCCTTCATCATGGACACTGGGAACCAGCGCTTTGAGTGCCATGTGTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTGGGGTCCACCAGGCTaGGCATGTCGTTTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLWGPPG*ACRFPG
Trigger: GCCTGGAAAACGACATGCTCAGCCTGGTGGACCCCA...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTCTGCTGCCCCTGTTCTaGAGCCTTGCGGAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCLLPLF*SLAELV
Trigger: AACCAGCTCCGCAAGGCTGCAGAACAGGGGCAGCAG...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTCTGCTGCCCCTGTTCTaGAGCCTTGCGGAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLLLPLF*SLAELV
Trigger: AACCAGCTCCGCAAGGCTGCAGAACAGGGGCAGCAG...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCAGAGCCGTGGAGATCTaGTGGGATGGAGACAGGCCG +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFRAVEI*WDGDRP
Trigger: CGGCCTGTCTCCATCCCAGCAGATCTCCACGGCTCT...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGTCTCCTGTAAGGAGCTaGAGGCCAGTGCTTTGGCGT +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRSPVRS*RPVLWR
Trigger: ACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGA...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTAGGGTATTTGGTGGTGTaGCTGGGCTGTTCCGGTTTG +
Preference number: 4 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLGYLVV*LGCSGL
Trigger: CAAACCGGAACAGCCCAGCCACACCACCAAATACCC...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGGATGACGTCATGAGAGGGTATTTGGTGGTGTaGCTGGGCTGTTCCGGTTTG +
Preference number: 4 (lower is better)
Translates to: ATFMFTEGQSSLLDDVMRGYLVV*LGCSGL
Trigger: CAAACCGGAACAGCCCAGCCACACCACCAAATACCC...TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCAGGGGCTGTACAGCTaGATCCGAGAGGCCCATGGC +
Preference number: 4 (lower is better)
Translates to: DKISGDKASATEWKARYRQGLYS*IREAHG
Trigger: GCCATGGGCCTCTCGGATCCAGCTGTACAGCCCCTG...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCGCAGCCTTGCGGAGCTaGTTCTCCCCATTTTTAACC +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGAALRS*FSPFLT
Trigger: GGTTAAAAATGGGGAGAACCAGCTCCGCAAGGCTGC...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTCCTCTCCAACCCCTTaGCAGGGGCCCAGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWSSPTP*QGPRFC
Trigger: GCAGAACCTGGGCCCCTGCCAAGGGGTTGGAGAGGA...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGGGCTGGACGATACTGTaGCTACTTGGCCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRGWTIL*LLGHPL
Trigger: CAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCC...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGGATGACGTCATGAGAGGAGATCTGCTGGGATaGAGACAGGCCGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: ATFMFTEGQSSLLDDVMRGDLLG*RQAVPI
Trigger: AATGGGAACGGCCTGTCTCCATCCCAGCAGATCTCC...TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTGGAGATCTGCTGGGATaGAGACAGGCCGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: LARKGVAAFFCVCARKSCGDLLG*RQAVPI
Trigger: AATGGGAACGGCCTGTCTCCATCCCAGCAGATCTCC...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGCCGTGGAGATCTGCTaGGATGGAGACAGGCCGTTC +
Preference number: 4 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSAVEIC*DGDRPF
Trigger: GAACGGCCTGTCTCCATCCCAGCAGATCTCCACGGC...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACCCTTTCCTAGAGCCGTaGAGATCTGCTGGGATGGAG +
Preference number: 4 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHPFLEP*RSAGME
Trigger: CTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGG...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCGGCAATGGCTTTTGCTaGTGTGTCACATCGAAACAC +
Preference number: 4 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCGNGFC*CVTSKH
Trigger: GTGTTTCGATGTGACACACCAGCAAAAGCCATTGCC...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCATGAAGGCGAATGTGTaGACATCCTTCCCGACACCC +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTMKANV*TSFPTP
Trigger: GGGTGTCGGGAAGGATGTCCACACATTCGCCTTCAT...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTGGCACTCAAAGCGCTaGTTCCCAGTGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGWHSKR*FPVSMM
Trigger: CATCATGGACACTGGGAACCAGCGCTTTGAGTGCCA...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCAGGCCCATGGCCGCCTaGATATTAGTCAGTGCATAT +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGRPMAA*ILVSAY
Trigger: ATATGCACTGACTAATATTCAGGCGGCCATGGGCCT...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTAAGGCCCATGGCCGCCTaGATATTAGTCAGTGCATAT +
Preference number: 4 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLRPMAA*ILVSAY
Trigger: ATATGCACTGACTAATATTCAGGCGGCCATGGGCCT...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTG +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGRYRTK*PFPRAV
Trigger: CACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACG...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTG +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTRYRTK*PFPRAV
Trigger: CACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACG...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTGGGGTCCACCAGGCTaGGCATGTCGTTTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWWGPPG*ACRFPG
Trigger: GCCTGGAAAACGACATGCTCAGCCTGGTGGACCCCA...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTGACTCTTCGGGTCACTaGATCTGCTGGCGGGGGCGG +
Preference number: 4 (lower is better)
Translates to: VCSEVLFTIFTRRRPSAADSSGH*ICWRGR
Trigger: CCGCCCCCGCCAGCAGATTCAGTGACCCGAAGAGTC...AGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGACTCTTCGGGTCACTaGATCTGCTGGCGGGGGCGG +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMDSSGH*ICWRGR
Trigger: CCGCCCCCGCCAGCAGATTCAGTGACCCGAAGAGTC...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACTGGGCTGTTCCGGTTTaGAATGTCTGTGGATCCGCT +
Preference number: 4 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHWAVPV*NVCGSA
Trigger: AGCGGATCCACAGACATTGCAAACCGGAACAGCCCA...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTGGGCTGTTCCGGTTTaGAATGTCTGTGGATCCGCT +
Preference number: 4 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSWAVPV*NVCGSA
Trigger: AGCGGATCCACAGACATTGCAAACCGGAACAGCCCA...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTTTGTTGGGGTCCTGCTaGCCCTGTTCTGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCLLGSC*PCSAAL
Trigger: CAAGGCTGCAGAACAGGGGCAGCAGGACCCCAACAA...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTTTCTTGTTGGGGTCCTaGTGCCCCTGTTCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSFLLGS*CPCSAA
Trigger: GGCTGCAGAACAGGGGCAGCAGGACCCCAACAAGAA...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GTCACAGTGGCGTCGGCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGCGAGGTTTCCAGGTCTaGATAGTAATTGAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: VTVASATFMFTEGQSSLLRGFQV*IVIEEA
Trigger: AGCTTCCTCAATTACTATGCAGACCTGGAAACCTCG...CAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGCCGACGCCACTGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR GCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTGGAGCTGCAGGCCAGTaGTTTGGCGTTCTTCCGTTC +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLGAAGQ*FGVLPF
Trigger: GAACGGAAGAACGCCAAAGCACTGGCCTGCAGCTCC...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTGTCTACAGGTAACATaGCCAGGTACTGCACGCGGA +
Preference number: 4 (lower is better)
Translates to: LARKGVAAFFCVCARKSCCLQVT*PGTARG
Trigger: TCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACA...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCATTTGGTGGTGTGGCTaGGCTGTTCCGGTTTGCAAT +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGIWWCG*AVPVCN
Trigger: ATTGCAAACCGGAACAGCCCAGCCACACCACCAAAT...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTAATTGAGGGTATTTGGTaGTGTGGCTGGGCTGTTCCG +
Preference number: 4 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLIEGIW*CGWAVP
Trigger: CGGAACAGCCCAGCCACACCACCAAATACCCTCAAT...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGATTGAGGGTATTTGGTaGTGTGGCTGGGCTGTTCCG +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRIEGIW*CGWAVP
Trigger: CGGAACAGCCCAGCCACACCACCAAATACCCTCAAT...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCCCAGGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAAGAGATTGAGGGTATTTaGTGGTGTGGCTGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: AQVLHAELLHQLRLWCWKEIEGI*WCGWAV
Trigger: AACAGCCCAGCCACACCACCAAATACCCTCAATCTC...TTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATACAGGGGCTGTACAGCTaGATCCGAGAGGCCCATGGC +
Preference number: 4 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIQGLYS*IREAHG
Trigger: GCCATGGGCCTCTCGGATCCAGCTGTACAGCCCCTG...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTTGCTGGATGACGTCATGAGAGCAGCCTTGCGGAGCTaGTTCTCCCCATTTTTAACC +
Preference number: 4 (lower is better)
Translates to: ATFMFTEGQSSLLDDVMRAALRS*FSPFLT
Trigger: GGTTAAAAATGGGGAGAACCAGCTCCGCAAGGCTGC...TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGGGATTGGGGTTTGTTTaGTTTCTGTGGCAGCAAGTC +
Preference number: 4 (lower is better)
Translates to: IPACCTRAVPLGHTASMLGLGFV*FLWQQV
Trigger: GACTTGCTGCCACAGAAACCAAACAAACCCCAATCC...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTAGGCCATCCTCTGGGCTaGATTGGGGTTTGTTTGGTT +
Preference number: 4 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLGHPLG*IGVCLV
Trigger: AACCAAACAAACCCCAATCCAGCCCAGAGGATGGCC...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTGATACTGTGGCTACTTaGCCATCCTCTGGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSDTVAT*PSSGLD
Trigger: ATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATC...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCTCTTGGTCTCTGGGCTaGACGATACTGTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTSWSLG*TILWLL
Trigger: AAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGA...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCGCTCCTGTTTTAGGGTaGTCTTTCTTGGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGAPVLG*SFLVSG
Trigger: CCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGC...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTCTTGGTGCCAGGTTCTaGATCCGATGGAGGGCACAG +
Preference number: 4 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSLGARF*IRWRAQ
Trigger: CTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAG...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTTTTCATCTGGGGAGCTaGGGGAGGCACTGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCFHLGS*GRHCLG
Trigger: CCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAA...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTGATATCTGTTTCATCTaGGGAGCTGGGGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSDICFI*GAGGGT
Trigger: AGTGCCTCCCCCAGCTCCCCAGATGAAACAGATATC...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGTTGAGTCGTCCCTGTTaGGATGTGCCAGTAATAGGT +
Preference number: 4 (lower is better)
Translates to: IPACCTRAVPLGHTASMLLSRPC*DVPVIG
Trigger: ACCTATTACTGGCACATCCCAACAGGGACGACTCAA...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGGCCGTGGAGATCTGCTaGGATGGAGACAGGCCGTTC +
Preference number: 4 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWAVEIC*DGDRPF
Trigger: GAACGGCCTGTCTCCATCCCAGCAGATCTCCACGGC...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTAATGAAGGCGAATGTGTaGACATCCTTCCCGACACCC +
Preference number: 4 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLMKANV*TSFPTP
Trigger: GGGTGTCGGGAAGGATGTCCACACATTCGCCTTCAT...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGTGGCACTCAAAGCGCTaGTTCCCAGTGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRWHSKR*FPVSMM
Trigger: CATCATGGACACTGGGAACCAGCGCTTTGAGTGCCA...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTGGCACTCAAAGCGCTaGTTCCCAGTGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSWHSKR*FPVSMM
Trigger: CATCATGGACACTGGGAACCAGCGCTTTGAGTGCCA...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CAA 72 bp GACACTTTTCAGGGACTAAACACAGATCCCTGCATGTaGTACAAGAGCCGTGCCACTGGGCCACACTGCCAG +
Preference number: 4 (lower is better)
Translates to: DTFQGLNTDPCM*YKSRATGPHCQ
Trigger: CTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGCAAGGTGCCAACACCTaGGTCAGCTGGAAGTACTTC +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLQGANT*VSWKYF
Trigger: GAAGTACTTCCAGCTGACTCAGGTGTTGGCACCTTG...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCGGGAGGAACGGAGATTaGGGGTATTTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFGRNGD*GYLVVW
Trigger: CCACACCACCAAATACCCTCAATCTCCGTTCCTCCC...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCCAAAATCTCACAGCCTaGAGACTCCTGTGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFQNLTA*RLLWVG
Trigger: CCCCACCCACAGGAGTCTTCAGGCTGTGAGATTTTG...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAAATCTTCAAAATCTCACAGCCTaGAGACTCCTGTGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: GTARGTSAPAPSLVLENLQNLTA*RLLWVG
Trigger: CCCCACCCACAGGAGTCTTCAGGCTGTGAGATTTTG...AAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTG +
Preference number: 4 (lower is better)
Translates to: LARKGVAAFFCVCARKSCRYRTK*PFPRAV
Trigger: CACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACG...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCGTCGGATGCAGTTGTTaGCAGCGACACTGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFVGCSC*QRHCSS
Trigger: GGAAGAGCAGTGTCGCTGTCAACAACTGCATCCGAC...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATATGGGGTCCACCAGGCTaGGCATGTCGTTTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIWGPPG*ACRFPG
Trigger: GCCTGGAAAACGACATGCTCAGCCTGGTGGACCCCA...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGTTCTTGTTGGGGTCCTaGTGCCCCTGTTCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: DKISGDKASATEWKARYRFLLGS*CPCSAA
Trigger: GGCTGCAGAACAGGGGCAGCAGGACCCCAACAAGAA...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAGAGCCGTGGAGATCTaGTGGGATGGAGACAGGCCG +
Preference number: 4 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIRAVEI*WDGDRP
Trigger: CGGCCTGTCTCCATCCCAGCAGATCTCCACGGCTCT...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTCACTGATGACAGTCACAGTGGCGTCGGCCACGTTCATGTTCACCGAAGGCCACCCGGATGTCGTTTTTaGAGTAGGAAAGCTGTCGGA +
Preference number: 4 (lower is better)
Translates to: FTDDSHSGVGHVHVHRRPPGCRF*SRKAVG
Trigger: TCCGACAGCTTTCCTACTGCAAAAACGACATCCGGG...TGGCCTTCGGTGAACATGAACGTGGCCGACGCCACTGTGACTGTCATCAGTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR GCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCCCGGATGTCGTTTTTaGAGTAGGAAAGCTGTCGGA +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRPGCRF*SRKAVG
Trigger: TCCGACAGCTTTCCTACTGCAAAAACGACATCCGGG...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTCCCGGATGTCGTTTTTaGAGTAGGAAAGCTGTCGGA +
Preference number: 4 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSPGCRF*SRKAVG
Trigger: TCCGACAGCTTTCCTACTGCAAAAACGACATCCGGG...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGGGAGCTGCAGGCCAGTaGTTTGGCGTTCTTCCGTTC +
Preference number: 4 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLGAAGQ*FGVLPF
Trigger: GAACGGAAGAACGCCAAAGCACTGGCCTGCAGCTCC...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGTGTCTACAGGTAACATaGCCAGGTACTGCACGCGGA +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLCLQVT*PGTARG
Trigger: TCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACA...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACAGGTAACATGCCCAGGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTATTTGGTGGTGTGGCTaGGCTGTTCCGGTTTGCAAT +
Preference number: 4 (lower is better)
Translates to: TGNMPRYCTRNFCTSSVFIWWCG*AVPVCN
Trigger: ATTGCAAACCGGAACAGCCCAGCCACACCACCAAAT...AAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCGGGTATTTGGTGGTGTaGCTGGGCTGTTCCGGTTTG +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFGYLVV*LGCSGL
Trigger: CAAACCGGAACAGCCCAGCCACACCACCAAATACCC...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGCAGGGGCTGTACAGCTaGATCCGAGAGGCCCATGGC +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMQGLYS*IREAHG
Trigger: GCCATGGGCCTCTCGGATCCAGCTGTACAGCCCCTG...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCTCCTCTCCAACCCCTTaGCAGGGGCCCAGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKASSPTP*QGPRFC
Trigger: GCAGAACCTGGGCCCCTGCCAAGGGGTTGGAGAGGA...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCTCCTCTCCAACCCCTTaGCAGGGGCCCAGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGSSPTP*QGPRFC
Trigger: GCAGAACCTGGGCCCCTGCCAAGGGGTTGGAGAGGA...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCTTGGTCTCTGGGCTaGACGATACTGTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: LARKGVAAFFCVCARKSCSWSLG*TILWLL
Trigger: AAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGA...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTGCTCCTGTTTTAGGGTaGTCTTTCTTGGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: LARKGVAAFFCVCARKSCAPVLG*SFLVSG
Trigger: CCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGC...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGAGGTTCTGGATCCGATaGAGGGCACAGTCGGTTTTG +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLRFWIR*RAQSVL
Trigger: CAAAACCGACTGTGCCCTCCATCGGATCCAGAACCT...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGTTTCATCTGGGGAGCTaGGGGAGGCACTGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLFHLGS*GRHCLG
Trigger: CCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAA...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGGAGATCTGCTGGGATaGAGACAGGCCGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCGDLLG*RQAVPI
Trigger: AATGGGAACGGCCTGTCTCCATCCCAGCAGATCTCC...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCCCTTTCCTAGAGCCGTaGAGATCTGCTGGGATGGAG +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFPFLEP*RSAGME
Trigger: CTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGG...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTCCTTTCCTAGAGCCGTaGAGATCTGCTGGGATGGAG +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCPFLEP*RSAGME
Trigger: CTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGG...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCCTCGGATGTTCACGATaGGCTGGGAGTGTAACACGG +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFLGCSR*AGSVTR
Trigger: CCGTGTTACACTCCCAGCCCATCGTGAACATCCGAG...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACTCACACCAGAACACATaGCACTCAAAGCGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHSHQNT*HSKRWF
Trigger: GAACCAGCGCTTTGAGTGCCATGTGTTCTGGTGTGA...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CAA 72 bp GGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTaGGTGTTGGAAAATCTTGCAAAGGGACATCGAGAC +
Preference number: 4 (lower is better)
Translates to: GTARGTSAPAPS*VLENLAKGHRD
Trigger: GTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CAA 72 bp TCGGCCACGTTCATGTTCACCGAAGGCCAGTCCTCCTaGCTGGATGACGTCATGAGATTTTCTATGGCACTG +
Preference number: 4 (lower is better)
Translates to: SATFMFTEGQSS*LDDVMRFSMAL
Trigger: CAGTGCCATAGAAAATCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTCGGTGAACATGAACGTGGCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp GTCGTGATCCTGGCTCTCATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCGGGAGGAACGGAGATTaGGGGTATTTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: VVILALMNFGGFLSHFVSGRNGD*GYLVVW
Trigger: CCACACCACCAAATACCCTCAATCTCCGTTCCTCCC...GCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCATGAGAGCCAGGATCACGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGGGGAGGAACGGAGATTaGGGGTATTTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: DKISGDKASATEWKARYRGRNGD*GYLVVW
Trigger: CCACACCACCAAATACCCTCAATCTCCGTTCCTCCC...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCGGGATCTGTCTGAAATaGGTGATCACTCCAGATATC +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGGICLK*VITPDI
Trigger: GATATCTGGAGTGATCACTCATTTCAGACAGATCCC...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp ATGGCACTCAAAGCGCTGGTTCCCAGTGTCCATGATGAAGGCGAATGTGTGGACCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTG +
Preference number: 4 (lower is better)
Translates to: MALKALVPSVHDEGECVDRYRTK*PFPRAV
Trigger: CACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACG...GTCCACACATTCGCCTTCATCATGGACACTGGGAACCAGCGCTTTGAGTGCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGCTTCTGGGTCACTGTTaGTACTACAAGAATCATCGT +
Preference number: 4 (lower is better)
Translates to: IPACCTRAVPLGHTASMLLLGHC*YYKNHR
Trigger: ACGATGATTCTTGTAGTATCAACAGTGACCCAGAAG...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGTGGGGTCCACCAGGCTaGGCATGTCGTTTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMWGPPG*ACRFPG
Trigger: GCCTGGAAAACGACATGCTCAGCCTGGTGGACCCCA...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGGGTCCACCAGGCTaGGCATGTCGTTTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSWGPPG*ACRFPG
Trigger: GCCTGGAAAACGACATGCTCAGCCTGGTGGACCCCA...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCCCTTCCCGACACCCATaGAGGACAGGAACCGCACTC +
Preference number: 4 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGPSRHP*RTGTAL
Trigger: GAGTGCGGTTCCTGTCCTTCATGGGTGTCGGGAAGG...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTGACTCTTCGGGTCACTaGATCTGCTGGCGGGGGCGG +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSDSSGH*ICWRGR
Trigger: CCGCCCCCGCCAGCAGATTCAGTGACCCGAAGAGTC...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCGTTTCAAAGTGTCAATaGGGGATAAGACCCCTCGTT +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTVSKCQ*GIRPLV
Trigger: AACGAGGGGTCTTATCCCTCATTGACACTTTGAAAC...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCCTGCTGCCCCTGTTCTaGAGCCTTGCGGAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGLLPLF*SLAELV
Trigger: AACCAGCTCCGCAAGGCTGCAGAACAGGGGCAGCAG...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCCGAGGTTTCCAGGTCTaGATAGTAATTGAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGRGFQV*IVIEEA
Trigger: AGCTTCCTCAATTACTATGCAGACCTGGAAACCTCG...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCTGTGGCAATGGCTTTTaGTGGTGTGTCACATCGAAA +
Preference number: 4 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTCGNGF*WCVTSK
Trigger: TTTCGATGTGACACACCAGCAAAAGCCATTGCCACA...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTATTGAGGGTATTTGGTaGTGTGGCTGGGCTGTTCCG +
Preference number: 4 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSIEGIW*CGWAVP
Trigger: CGGAACAGCCCAGCCACACCACCAAATACCCTCAAT...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCGCAGCCTTGCGGAGCTaGTTCTCCCCATTTTTAACC +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFAALRS*FSPFLT
Trigger: GGTTAAAAATGGGGAGAACCAGCTCCGCAAGGCTGC...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGTTAGTTCTCCTGGGCTaGGAGGGCAAAATCTCACAG +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLLVLLG*EGKISQ
Trigger: CTGTGAGATTTTGCCCTCCCAGCCCAGGAGAACTAA...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATTCCCAATGACTACTaGGGCCTGGCCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMIPNDY*GLAWAR
Trigger: CCTGGCCCAGGCCAGGCCCCAGTAGTCATTGGGAAT...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGGGATTGGGGTTTGTTTaGTTTCTGTGGCAGCAAGTC +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRGLGFV*FLWQQV
Trigger: GACTTGCTGCCACAGAAACCAAACAAACCCCAATCC...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTGGCCATCCTCTGGGCTaGATTGGGGTTTGTTTGGTT +
Preference number: 4 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCGHPLG*IGVCLV
Trigger: AACCAAACAAACCCCAATCCAGCCCAGAGGATGGCC...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGTACTTGGCCATCCTCTaGGCTGGATTGGGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLYLAIL*AGLGFV
Trigger: AACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTA...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGGCTCCTGTTTTAGGGTaGTCTTTCTTGGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLAPVLG*SFLVSG
Trigger: CCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGC...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTAGGTTCTGGATCCGATaGAGGGCACAGTCGGTTTTG +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCRFWIR*RAQSVL
Trigger: CAAAACCGACTGTGCCCTCCATCGGATCCAGAACCT...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCAGGTTCTGGATCCGATaGAGGGCACAGTCGGTTTTG +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFRFWIR*RAQSVL
Trigger: CAAAACCGACTGTGCCCTCCATCGGATCCAGAACCT...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACGGATTCCTCGTCACTTaGTGCCAGGTTCTGGATCCG +
Preference number: 4 (lower is better)
Translates to: APLYITWWRQDEVTCLSNGFLVT*CQVLDP
Trigger: CGGATCCAGAACCTGGCACCAAGTGACGAGGAATCC...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGCTTTGGCGTTCTTCCGTTCAGCCATAATCTTGGAGCAGATTTCGTGGAGACTTTTCATCTGGGGAGCTaGGGGAGGCACTGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: CFGVLPFSHNLGADFVETFHLGS*GRHCLG
Trigger: CCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAA...AGTCTCCACGAAATCTGCTCCAAGATTATGGCTGAACGGAAGAACGCCAAAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGATATCTGTTTCATCTaGGGAGCTGGGGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCDICFI*GAGGGT
Trigger: AGTGCCTCCCCCAGCTCCCCAGATGAAACAGATATC...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTGATATCTGTTTCATCTaGGGAGCTGGGGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLDICFI*GAGGGT
Trigger: AGTGCCTCCCCCAGCTCCCCAGATGAAACAGATATC...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACTTGAGTCGTCCCTGTTaGGATGTGCCAGTAATAGGT +
Preference number: 4 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHLSRPC*DVPVIG
Trigger: ACCTATTACTGGCACATCCCAACAGGGACGACTCAA...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGCCGTGGAGATCTGCTaGGATGGAGACAGGCCGTTC +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMAVEIC*DGDRPF
Trigger: GAACGGCCTGTCTCCATCCCAGCAGATCTCCACGGC...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAAATCTTGCAAAGGGACACCTTTCCTAGAGCCGTaGAGATCTGCTGGGATGGAG +
Preference number: 4 (lower is better)
Translates to: RNFCTSSVFGVGKSCKGTPFLEP*RSAGME
Trigger: CTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGG...TGTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTCTCATTCTCTGGGGTaGGCGATGGCGTTACAGAAC +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFSHSLG*AMALQN
Trigger: GTTCTGTAACGCCATCGCCCACCCCAGAGAATGAGA...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087256.12
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTTTCGTGGAGACTTGTaGCAATGGCTTTTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSFRGDL*QWLLLV
Trigger: CACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAA...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACTTTCGTGGAGACTTGTaGCAATGGCTTTTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHFRGDL*QWLLLV
Trigger: CACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAA...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTGCAGGCCAGTGCTTTaGCGTTCTTCCGTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWCRPVL*RSSVQP
Trigger: TGGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCA...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTCGTGATCCTGGCTCTCATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCTGCAGGCCAGTGCTTTaGCGTTCTTCCGTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: VVILALMNFGGFLSHFVSCRPVL*RSSVQP
Trigger: TGGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCA...GCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCATGAGAGCCAGGATCACGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTATGAAGGCGAATGTGTaGACATCCTTCCCGACACCC +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLMKANV*TSFPTP
Trigger: GGGTGTCGGGAAGGATGTCCACACATTCGCCTTCAT...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTATGAAGGCGAATGTGTaGACATCCTTCCCGACACCC +
Preference number: 4 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCMKANV*TSFPTP
Trigger: GGGTGTCGGGAAGGATGTCCACACATTCGCCTTCAT...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGAACATGCAGGCAGCCTaGACAGCTTCTGACACATTG +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLNMQAA*TASDTL
Trigger: CAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTT...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTTCTGCGAAGGTGGCCTaGCAACCAAGCACTTCTGAT +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCSAKVA*QPSTSD
Trigger: ATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGA...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTTCTGCGAAGGTGGCCTaGCAACCAAGCACTTCTGAT +
Preference number: 4 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCSAKVA*QPSTSD
Trigger: ATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGA...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTGACTTTCTGCGAAGGTaGCCTGGCAACCAAGCACTT +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLDFLRR*PGNQAL
Trigger: AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTC...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTCGTGATCCTGGCTCTCATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCATCTGCTGTTTCATCTaGGGAGCTGGGGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: VVILALMNFGGFLSHFVSICCFI*GAGGGT
Trigger: AGTGCCTCCCCCAGCTCCCCAGATGAAACAGCAGAT...GCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCATGAGAGCCAGGATCACGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159512.8
CDS-3UTR CCA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTCCTCATTCTCTGGGGTaGGCGATGGCGTTACAGAAC +
Preference number: 4 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATPHSLG*AMALQN
Trigger: GTTCTGTAACGCCATCGCCCACCCCAGAGAATGAGG...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTACACCAGCTCCGTCTTTaGTGTTGGAAAATCTTGCAA +
Preference number: 4 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLHQLRL*CWKILQ
Trigger: TTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTG...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCAGGCCCATGGCCGCCTaGATATTAGTCAGTGCATAT +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFRPMAA*ILVSAY
Trigger: ATATGCACTGACTAATATTCAGGCGGCCATGGGCCT...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTAGGGATCTGTCTGAAATaGGTGATCACTCCAGATATC +
Preference number: 4 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLGICLK*VITPDI
Trigger: GATATCTGGAGTGATCACTCATTTCAGACAGATCCC...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTG +
Preference number: 4 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSRYRTK*PFPRAV
Trigger: CACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACG...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCCCAGGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAACTTCTGGGTCACTGTTaGTACTACAAGAATCATCGT +
Preference number: 4 (lower is better)
Translates to: AQVLHAELLHQLRLWCWKLLGHC*YYKNHR
Trigger: ACGATGATTCTTGTAGTATCAACAGTGACCCAGAAG...TTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTTGGGGTCCACCAGGCTaGGCATGTCGTTTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGWGPPG*ACRFPG
Trigger: GCCTGGAAAACGACATGCTCAGCCTGGTGGACCCCA...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTAGTCCTCCTTGCTGGATaGCGTCATGAGATTTTCTAT +
Preference number: 4 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLVLLAG*RHEIFY
Trigger: ATAGAAAATCTCATGACGTCATCCAGCAAGGAGGAC...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTCCTTCCCGACACCCATaGAGGACAGGAACCGCACTC +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGPSRHP*RTGTAL
Trigger: GAGTGCGGTTCCTGTCCTTCATGGGTGTCGGGAAGG...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGGTTTCAAAGTGTCAATaGGGGATAAGACCCCTCGTT +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRVSKCQ*GIRPLV
Trigger: AACGAGGGGTCTTATCCCTCATTGACACTTTGAAAC...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACTGGGCTGTTCCGGTTTaGAATGTCTGTGGATCCGCT +
Preference number: 4 (lower is better)
Translates to: APLYITWWRQDEVTCLSNWAVPV*NVCGSA
Trigger: AGCGGATCCACAGACATTGCAAACCGGAACAGCCCA...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGAGAGCCGTGGAGATCTaGTGGGATGGAGACAGGCCG +
Preference number: 4 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMRAVEI*WDGDRP
Trigger: CGGCCTGTCTCCATCCCAGCAGATCTCCACGGCTCT...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTCCCGGATGTCGTTTTTaGAGTAGGAAAGCTGTCGGA +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCPGCRF*SRKAVG
Trigger: TCCGACAGCTTTCCTACTGCAAAAACGACATCCGGG...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTCCCGGATGTCGTTTTTaGAGTAGGAAAGCTGTCGGA +
Preference number: 4 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCPGCRF*SRKAVG
Trigger: TCCGACAGCTTTCCTACTGCAAAAACGACATCCGGG...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGGAGCTGCAGGCCAGTaGTTTGGCGTTCTTCCGTTC +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMGAAGQ*FGVLPF
Trigger: GAACGGAAGAACGCCAAAGCACTGGCCTGCAGCTCC...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGTGTCTACAGGTAACATaGCCAGGTACTGCACGCGGA +
Preference number: 4 (lower is better)
Translates to: DKISGDKASATEWKARYRCLQVT*PGTARG
Trigger: TCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACA...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAGGGTATTTGGTGGTGTaGCTGGGCTGTTCCGGTTTG +
Preference number: 4 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIGYLVV*LGCSGL
Trigger: CAAACCGGAACAGCCCAGCCACACCACCAAATACCC...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTTAGTTCTCCTGGGCTaGGAGGGCAAAATCTCACAG +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLLVLLG*EGKISQ
Trigger: CTGTGAGATTTTGCCCTCCCAGCCCAGGAGAACTAA...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGTCCTCTCCAACCCCTTaGCAGGGGCCCAGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKSSPTP*QGPRFC
Trigger: GCAGAACCTGGGCCCCTGCCAAGGGGTTGGAGAGGA...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCTTGTGGTGCTCTGTATTCATTCCCAATGACTACTaGGGCCTGGCCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: MNFGGFLSHFVSLWCSVFIPNDY*GLAWAR
Trigger: CCTGGCCCAGGCCAGGCCCCAGTAGTCATTGGGAAT...GAATACAGAGCACCACAAGCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGGGATTGGGGTTTGTTTaGTTTCTGTGGCAGCAAGTC +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLGLGFV*FLWQQV
Trigger: GACTTGCTGCCACAGAAACCAAACAAACCCCAATCC...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTACTTGGCCATCCTCTaGGCTGGATTGGGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLYLAIL*AGLGFV
Trigger: AACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTA...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGGATACTGTGGCTACTTaGCCATCCTCTGGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLDTVAT*PSSGLD
Trigger: ATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATC...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAGGCTGGACGATACTGTaGCTACTTGGCCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIGWTIL*LLGHPL
Trigger: CAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCC...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTTCTTGGTCTCTGGGCTaGACGATACTGTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCSWSLG*TILWLL
Trigger: AAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGA...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTCTTGGTGCCAGGTTCTaGATCCGATGGAGGGCACAG +
Preference number: 4 (lower is better)
Translates to: FISHGGGKTRSHACLTLSLGARF*IRWRAQ
Trigger: CTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAG...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCCTTGGTGCCAGGTTCTaGATCCGATGGAGGGCACAG +
Preference number: 4 (lower is better)
Translates to: KIKSLETKHRQLSGRPGILGARF*IRWRAQ
Trigger: CTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAG...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSGEALS*DSVVQL
Trigger: CAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCC...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCTTTCATCTGGGGAGCTaGGGGAGGCACTGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: KIKSLETKHRQLSGRPGIFHLGS*GRHCLG
Trigger: CCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAA...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GATGACGTCATGAGATTTTCTATGGCACTGTTCAGGGTGTCCATGCCGACAGGTTCTCATTCTCTGGGGTaGGCGATGGCGTTACAGAAC +
Preference number: 4 (lower is better)
Translates to: DDVMRFSMALFRVSMPTGSHSLG*AMALQN
Trigger: GTTCTGTAACGCCATCGCCCACCCCAGAGAATGAGA...ACCTGTCGGCATGGACACCCTGAACAGTGCCATAGAAAATCTCATGACGTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp AGTTTTGAGATGTGGGTCGTGATCCTGGCTCTCATGAACTTTGGTGGCTTCCTATGCAGGCCAGTGCTTTaGCGTTCTTCCGTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: SFEMWVVILALMNFGGFLCRPVL*RSSVQP
Trigger: TGGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCA...TAGGAAGCCACCAAAGTTCATGAGAGCCAGGATCACGACCCACATCTCAAAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGTGGCACTCAAAGCGCTaGTTCCCAGTGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: DKISGDKASATEWKARYRWHSKR*FPVSMM
Trigger: CATCATGGACACTGGGAACCAGCGCTTTGAGTGCCA...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTTCACACCAGAACACATaGCACTCAAAGCGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCSHQNT*HSKRWF
Trigger: GAACCAGCGCTTTGAGTGCCATGTGTTCTGGTGTGA...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTCACACCAGAACACATaGCACTCAAAGCGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFSHQNT*HSKRWF
Trigger: GAACCAGCGCTTTGAGTGCCATGTGTTCTGGTGTGA...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
3UTR CAA 72 bp ATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTaGGCTTGTGACAGATCCAGTCAAGAGGACAGCAAA +
Preference number: 4 (lower is better)
Translates to: IRNQGKVLRDPK*ACDRSSQEDSK
Trigger: TTTGCTGTCCTCTTGACTGGATCTGTCACAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AGTTTTGAGATGTGGGTCGTGATCCTGGCTCTCATGAACTTTGGTGGCTTCCTACAAGGTGCCAACACCTaGGTCAGCTGGAAGTACTTC +
Preference number: 4 (lower is better)
Translates to: SFEMWVVILALMNFGGFLQGANT*VSWKYF
Trigger: GAAGTACTTCCAGCTGACTCAGGTGTTGGCACCTTG...TAGGAAGCCACCAAAGTTCATGAGAGCCAGGATCACGACCCACATCTCAAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGGGAGGAACGGAGATTaGGGGTATTTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMGRNGD*GYLVVW
Trigger: CCACACCACCAAATACCCTCAATCTCCGTTCCTCCC...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGAGGCCCATGGCCGCCTaGATATTAGTCAGTGCATAT +
Preference number: 4 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLRPMAA*ILVSAY
Trigger: ATATGCACTGACTAATATTCAGGCGGCCATGGGCCT...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTG +
Preference number: 4 (lower is better)
Translates to: DKISGDKASATEWKARYRRYRTK*PFPRAV
Trigger: CACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACG...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACCTTCTGGGTCACTGTTaGTACTACAAGAATCATCGT +
Preference number: 4 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHLLGHC*YYKNHR
Trigger: ACGATGATTCTTGTAGTATCAACAGTGACCCAGAAG...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTTCTGGGTCACTGTTaGTACTACAAGAATCATCGT +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRLLGHC*YYKNHR
Trigger: ACGATGATTCTTGTAGTATCAACAGTGACCCAGAAG...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTGTCGGATGCAGTTGTTaGCAGCGACACTGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: KIMLLFISHGGGKTRSHAVGCSC*QRHCSS
Trigger: GGAAGAGCAGTGTCGCTGTCAACAACTGCATCCGAC...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCACCTTCCCGACACCCATaGAGGACAGGAACCGCACTC +
Preference number: 4 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSPSRHP*RTGTAL
Trigger: GAGTGCGGTTCCTGTCCTTCATGGGTGTCGGGAAGG...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTCCTTCCCGACACCCATaGAGGACAGGAACCGCACTC +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSPSRHP*RTGTAL
Trigger: GAGTGCGGTTCCTGTCCTTCATGGGTGTCGGGAAGG...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACGACTCTTCGGGTCACTaGATCTGCTGGCGGGGGCGG +
Preference number: 4 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYDSSGH*ICWRGR
Trigger: CCGCCCCCGCCAGCAGATTCAGTGACCCGAAGAGTC...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CAGGTAAAACATCAGCATCCTCTCACAGACAAATACAAACAGACTTCCATACATGACTCTTCGGGTCACTaGATCTGCTGGCGGGGGCGG +
Preference number: 4 (lower is better)
Translates to: QVKHQHPLTDKYKQTSIHDSSGH*ICWRGR
Trigger: CCGCCCCCGCCAGCAGATTCAGTGACCCGAAGAGTC...ATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGCTGATGTTTTACCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTGCTGCCCCTGTTCTaGAGCCTTGCGGAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDLLPLF*SLAELV
Trigger: AACCAGCTCCGCAAGGCTGCAGAACAGGGGCAGCAG...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACTTGTTGGGGTCCTGCTaGCCCTGTTCTGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINLLGSC*PCSAAL
Trigger: CAAGGCTGCAGAACAGGGGCAGCAGGACCCCAACAA...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGAGAGCCGTGGAGATCTaGTGGGATGGAGACAGGCCG +
Preference number: 4 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKRAVEI*WDGDRP
Trigger: CGGCCTGTCTCCATCCCAGCAGATCTCCACGGCTCT...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGGTTGGAAAATCTACTTaGAAAGGGACATCGAGACTC +
Preference number: 4 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRVGKST*KGTSRL
Trigger: GAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAAC...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp GTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTGGGTATTTGGTGGTGTaGCTGGGCTGTTCCGGTTTG +
Preference number: 4 (lower is better)
Translates to: VCSEVLFTIFTRRRPSAAGYLVV*LGCSGL
Trigger: CAAACCGGAACAGCCCAGCCACACCACCAAATACCC...AGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGGAGATTGAGGGTATTTaGTGGTGTGGCTGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWEIEGI*WCGWAV
Trigger: AACAGCCCAGCCACACCACCAAATACCCTCAATCTC...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAATTCCCAATGACTACTaGGGCCTGGCCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSIPNDY*GLAWAR
Trigger: CCTGGCCCAGGCCAGGCCCCAGTAGTCATTGGGAAT...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAGGTTCTGGATCCGATaGAGGGCACAGTCGGTTTTG +
Preference number: 4 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIRFWIR*RAQSVL
Trigger: CAAAACCGACTGTGCCCTCCATCGGATCCAGAACCT...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGCTTTGGCGTTCTTCCGTTCAGCCATAATCTTGGAGCAGATTTCGTGGAGACTAGGTTCTGGATCCGATaGAGGGCACAGTCGGTTTTG +
Preference number: 4 (lower is better)
Translates to: CFGVLPFSHNLGADFVETRFWIR*RAQSVL
Trigger: CAAAACCGACTGTGCCCTCCATCGGATCCAGAACCT...AGTCTCCACGAAATCTGCTCCAAGATTATGGCTGAACGGAAGAACGCCAAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGATTCCTCGTCACTTaGTGCCAGGTTCTGGATCCG +
Preference number: 4 (lower is better)
Translates to: FISHGGGKTRSHACLTLSGFLVT*CQVLDP
Trigger: CGGATCCAGAACCTGGCACCAAGTGACGAGGAATCC...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCGGATTCCTCGTCACTTaGTGCCAGGTTCTGGATCCG +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKAGFLVT*CQVLDP
Trigger: CGGATCCAGAACCTGGCACCAAGTGACGAGGAATCC...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTTTCATCTGGGGAGCTaGGGGAGGCACTGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMFHLGS*GRHCLG
Trigger: CCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAA...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTTTGAGTCGTCCCTGTTaGGATGTGCCAGTAATAGGT +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCLSRPC*DVPVIG
Trigger: ACCTATTACTGGCACATCCCAACAGGGACGACTCAA...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTGCCGTGGAGATCTGCTaGGATGGAGACAGGCCGTTC +
Preference number: 4 (lower is better)
Translates to: RQDEVTCLSNTVWLKIKSAVEIC*DGDRPF
Trigger: GAACGGCCTGTCTCCATCCCAGCAGATCTCCACGGC...AGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACGCCGTGGAGATCTGCTaGGATGGAGACAGGCCGTTC +
Preference number: 4 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDAVEIC*DGDRPF
Trigger: GAACGGCCTGTCTCCATCCCAGCAGATCTCCACGGC...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCCCTTTCCTAGAGCCGTaGAGATCTGCTGGGATGGAG +
Preference number: 4 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGPFLEP*RSAGME
Trigger: CTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGG...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCCTTTCCTAGAGCCGTaGAGATCTGCTGGGATGGAG +
Preference number: 4 (lower is better)
Translates to: VCSEVLFTIFTRRRPSAAPFLEP*RSAGME
Trigger: CTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGG...AGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCTGCAGGCCAGTGCTTTaGCGTTCTTCCGTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: KIKSLETKHRQLSGRPGICRPVL*RSSVQP
Trigger: TGGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCA...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGCAGGCCAGTGCTTTaGCGTTCTTCCGTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSCRPVL*RSSVQP
Trigger: TGGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCA...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTCATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGC +
Preference number: 4 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCHRDSY*SSPVRS
Trigger: GCTCCTTACAGGAGAGGACCAATATGAGTCTCGATG...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTTCACACCAGAACACATaGCACTCAAAGCGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATSHQNT*HSKRWF
Trigger: GAACCAGCGCTTTGAGTGCCATGTGTTCTGGTGTGA...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGAACATGCAGGCAGCCTaGACAGCTTCTGACACATTG +
Preference number: 4 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWNMQAA*TASDTL
Trigger: CAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTT...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTCCTCATTCTCTGGGGTaGGCGATGGCGTTACAGAAC +
Preference number: 4 (lower is better)
Translates to: KIMLLFISHGGGKTRSHAPHSLG*AMALQN
Trigger: GTTCTGTAACGCCATCGCCCACCCCAGAGAATGAGG...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000162366.8
3UTR CAA 72 bp GTTGGAAAATCTTGCAAAGGGACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCT +
Preference number: 4 (lower is better)
Translates to: VGKSCKGTSRLI*VLSCKELQASA
Trigger: AGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CAA 72 bp GCACGCGGAACTTCTGCACCAGCTCCGTCTTTGGTGTaGGAAAATCTTGCAAAGGGACATCGAGACTCATAT +
Preference number: 4 (lower is better)
Translates to: ARGTSAPAPSLV*ENLAKGHRDSY
Trigger: ATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
3UTR CAA 72 bp AAAGTGTCAATGAGGGATAAGACCCCTCGTTTCACATaGGTCGTGACTCTTCGGGTCACTGAATCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: KVSMRDKTPRFT*VVTLRVTESAG
Trigger: GCCAGCAGATTCAGTGACCCGAAGAGTCACGACCAATGTGAAACGAGGGGTCTTATCCCTCATTGACACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTATGGCATCTGAGTGTTTaGTCTCTGCATTTAATAGTT +
Preference number: 4 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLWHLSV*SLHLIV
Trigger: AACTATTAAATGCAGAGATCAAACACTCAGATGCCA...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTGCTGGATGACGTCATaGGATTTTCTATGGCACTGT +
Preference number: 4 (lower is better)
Translates to: ISGDKASATEWKARYRLLCWMTS*DFLWHC
Trigger: ACAGTGCCATAGAAAATCTCATGACGTCATCCAGCA...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTCCTCCTTGCTGGATaGCGTCATGAGATTTTCTAT +
Preference number: 4 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSVLLAG*RHEIFY
Trigger: ATAGAAAATCTCATGACGTCATCCAGCAAGGAGGAC...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTGTCCTCCTTGCTGGATaGCGTCATGAGATTTTCTAT +
Preference number: 4 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCVLLAG*RHEIFY
Trigger: ATAGAAAATCTCATGACGTCATCCAGCAAGGAGGAC...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTACCTTCCCGACACCCATaGAGGACAGGAACCGCACTC +
Preference number: 4 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVPSRHP*RTGTAL
Trigger: GAGTGCGGTTCCTGTCCTTCATGGGTGTCGGGAAGG...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGTTGTTGGGGTCCTGCTaGCCCTGTTCTGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKLLGSC*PCSAAL
Trigger: CAAGGCTGCAGAACAGGGGCAGCAGGACCCCAACAA...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCATTGTTGGGGTCCTGCTaGCCCTGTTCTGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSLLGSC*PCSAAL
Trigger: CAAGGCTGCAGAACAGGGGCAGCAGGACCCCAACAA...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTCGAGGTTTCCAGGTCTaGATAGTAATTGAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCRGFQV*IVIEEA
Trigger: AGCTTCCTCAATTACTATGCAGACCTGGAAACCTCG...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGAGAGCCGTGGAGATCTaGTGGGATGGAGACAGGCCG +
Preference number: 4 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMRAVEI*WDGDRP
Trigger: CGGCCTGTCTCCATCCCAGCAGATCTCCACGGCTCT...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTCTCCTGTAAGGAGCTaGAGGCCAGTGCTTTGGCGT +
Preference number: 4 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMSPVRS*RPVLWR
Trigger: ACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGA...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGGGGTATTTGGTGGTGTaGCTGGGCTGTTCCGGTTTG +
Preference number: 4 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMGYLVV*LGCSGL
Trigger: CAAACCGGAACAGCCCAGCCACACCACCAAATACCC...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCATTGAGGGTATTTGGTaGTGTGGCTGGGCTGTTCCG +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKAIEGIW*CGWAVP
Trigger: CGGAACAGCCCAGCCACACCACCAAATACCCTCAAT...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATATTAGTTCTCCTGGGCTaGGAGGGCAAAATCTCACAG +
Preference number: 4 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKILVLLG*EGKISQ
Trigger: CTGTGAGATTTTGCCCTCCCAGCCCAGGAGAACTAA...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGGGATTGGGGTTTGTTTaGTTTCTGTGGCAGCAAGTC +
Preference number: 4 (lower is better)
Translates to: DKISGDKASATEWKARYRGLGFV*FLWQQV
Trigger: GACTTGCTGCCACAGAAACCAAACAAACCCCAATCC...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCCATCCTCTGGGCTaGATTGGGGTTTGTTTGGTT +
Preference number: 4 (lower is better)
Translates to: KIKSLETKHRQLSGRPGIGHPLG*IGVCLV
Trigger: AACCAAACAAACCCCAATCCAGCCCAGAGGATGGCC...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGGCCATCCTCTGGGCTaGATTGGGGTTTGTTTGGTT +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMGHPLG*IGVCLV
Trigger: AACCAAACAAACCCCAATCCAGCCCAGAGGATGGCC...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCAGATACTGTGGCTACTTaGCCATCCTCTGGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSDTVAT*PSSGLD
Trigger: ATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATC...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGATACTGTGGCTACTTaGCCATCCTCTGGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: FISHGGGKTRSHACLTLSDTVAT*PSSGLD
Trigger: ATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATC...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCAGGTTCTGGATCCGATaGAGGGCACAGTCGGTTTTG +
Preference number: 4 (lower is better)
Translates to: KIKSLETKHRQLSGRPGIRFWIR*RAQSVL
Trigger: CAAAACCGACTGTGCCCTCCATCGGATCCAGAACCT...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTCTTGGTGCCAGGTTCTaGATCCGATGGAGGGCACAG +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSLGARF*IRWRAQ
Trigger: CTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAG...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCGGAGATCTGCTGGGATaGAGACAGGCCGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIGDLLG*RQAVPI
Trigger: AATGGGAACGGCCTGTCTCCATCCCAGCAGATCTCC...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCTCTCATTCTCTGGGGTaGGCGATGGCGTTACAGAAC +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKASHSLG*AMALQN
Trigger: GTTCTGTAACGCCATCGCCCACCCCAGAGAATGAGA...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087256.12
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTAAAAACACTTGGCTTCTaGGTCACTGTTGATACTACA +
Preference number: 4 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLKTLGF*VTVDTT
Trigger: TGTAGTATCAACAGTGACCCAGAAGCCAAGTGTTTT...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCTCGGATGTTCACGATaGGCTGGGAGTGTAACACGG +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRILGCSR*AGSVTR
Trigger: CCGTGTTACACTCCCAGCCCATCGTGAACATCCGAG...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCTGCAGGCCAGTGCTTTaGCGTTCTTCCGTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRICRPVL*RSSVQP
Trigger: TGGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCA...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTCGTGATCCTGGCTCTCATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCCATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGC +
Preference number: 4 (lower is better)
Translates to: VVILALMNFGGFLSHFVSHRDSY*SSPVRS
Trigger: GCTCCTTACAGGAGAGGACCAATATGAGTCTCGATG...GCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCATGAGAGCCAGGATCACGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTCTGCGAAGGTGGCCTaGCAACCAAGCACTTCTGAT +
Preference number: 4 (lower is better)
Translates to: KIMLLFISHGGGKTRSHASAKVA*QPSTSD
Trigger: ATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGA...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCGACTTTCTGCGAAGGTaGCCTGGCAACCAAGCACTT +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKADFLRR*PGNQAL
Trigger: AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTC...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCAAGGTGCCAACACCTaGGTCAGCTGGAAGTACTTC +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIQGANT*VSWKYF
Trigger: GAAGTACTTCCAGCTGACTCAGGTGTTGGCACCTTG...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CTTTGGTGTTGGAAAATCTTGCAAAGGGACATCGAGACTCATATTGGTCCTCTCCAAGGTGCCAACACCTaGGTCAGCTGGAAGTACTTC +
Preference number: 4 (lower is better)
Translates to: LWCWKILQRDIETHIGPLQGANT*VSWKYF
Trigger: GAAGTACTTCCAGCTGACTCAGGTGTTGGCACCTTG...GAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTGGGAGGAACGGAGATTaGGGGTATTTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSGRNGD*GYLVVW
Trigger: CCACACCACCAAATACCCTCAATCTCCGTTCCTCCC...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTGGGAGGAACGGAGATTaGGGGTATTTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: RQDEVTCLSNTVWLKIKSGRNGD*GYLVVW
Trigger: CCACACCACCAAATACCCTCAATCTCCGTTCCTCCC...AGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCAGGCCCATGGCCGCCTaGATATTAGTCAGTGCATAT +
Preference number: 4 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGRPMAA*ILVSAY
Trigger: ATATGCACTGACTAATATTCAGGCGGCCATGGGCCT...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACGGGATCTGTCTGAAATaGGTGATCACTCCAGATATC +
Preference number: 4 (lower is better)
Translates to: APLYITWWRQDEVTCLSNGICLK*VITPDI
Trigger: GATATCTGGAGTGATCACTCATTTCAGACAGATCCC...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTCTTCTGGGTCACTGTTaGTACTACAAGAATCATCGT +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCLLGHC*YYKNHR
Trigger: ACGATGATTCTTGTAGTATCAACAGTGACCCAGAAG...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTGCTGGATGACGTCATaGGATTTTCTATGGCACTGT +
Preference number: 4 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWCWMTS*DFLWHC
Trigger: ACAGTGCCATAGAAAATCTCATGACGTCATCCAGCA...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGGTCCTCCTTGCTGGATaGCGTCATGAGATTTTCTAT +
Preference number: 4 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLVLLAG*RHEIFY
Trigger: ATAGAAAATCTCATGACGTCATCCAGCAAGGAGGAC...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTGTTTCAAAGTGTCAATaGGGGATAAGACCCCTCGTT +
Preference number: 4 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATVSKCQ*GIRPLV
Trigger: AACGAGGGGTCTTATCCCTCATTGACACTTTGAAAC...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCTGGGCTGTTCCGGTTTaGAATGTCTGTGGATCCGCT +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIWAVPV*NVCGSA
Trigger: AGCGGATCCACAGACATTGCAAACCGGAACAGCCCA...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACCTGCTGCCCCTGTTCTaGAGCCTTGCGGAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYLLPLF*SLAELV
Trigger: AACCAGCTCCGCAAGGCTGCAGAACAGGGGCAGCAG...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGCGAGGTTTCCAGGTCTaGATAGTAATTGAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWRGFQV*IVIEEA
Trigger: AGCTTCCTCAATTACTATGCAGACCTGGAAACCTCG...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTCGAGGTTTCCAGGTCTaGATAGTAATTGAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATRGFQV*IVIEEA
Trigger: AGCTTCCTCAATTACTATGCAGACCTGGAAACCTCG...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTTGTGGCAATGGCTTTTaGTGGTGTGTCACATCGAAA +
Preference number: 4 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATCGNGF*WCVTSK
Trigger: TTTCGATGTGACACACCAGCAAAAGCCATTGCCACA...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACTGTGGCAATGGCTTTTaGTGGTGTGTCACATCGAAA +
Preference number: 4 (lower is better)
Translates to: APLYITWWRQDEVTCLSNCGNGF*WCVTSK
Trigger: TTTCGATGTGACACACCAGCAAAAGCCATTGCCACA...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGTCTCCTGTAAGGAGCTaGAGGCCAGTGCTTTGGCGT +
Preference number: 4 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKSPVRS*RPVLWR
Trigger: ACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGA...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTTGGAAAATCTACTTaGAAAGGGACATCGAGACTC +
Preference number: 4 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCVGKST*KGTSRL
Trigger: GAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAAC...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR GCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCTGTCTACAGGTAACATaGCCAGGTACTGCACGCGGA +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRICLQVT*PGTARG
Trigger: TCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACA...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGGGTGTTGGAAAATCTTaGAAAGGGACATCGAGACTC +
Preference number: 4 (lower is better)
Translates to: DKISGDKASATEWKARYRGVGKS*KGTSRL
Trigger: GAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACC...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGATTGAGGGTATTTGGTaGTGTGGCTGGGCTGTTCCG +
Preference number: 4 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMIEGIW*CGWAVP
Trigger: CGGAACAGCCCAGCCACACCACCAAATACCCTCAAT...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCAGAGATTGAGGGTATTTaGTGGTGTGGCTGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSEIEGI*WCGWAV
Trigger: AACAGCCCAGCCACACCACCAAATACCCTCAATCTC...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAACAGGGGCTGTACAGCTaGATCCGAGAGGCCCATGGC +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKQGLYS*IREAHG
Trigger: GCCATGGGCCTCTCGGATCCAGCTGTACAGCCCCTG...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCAGGGGCTGTACAGCTaGATCCGAGAGGCCCATGGC +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHQGLYS*IREAHG
Trigger: GCCATGGGCCTCTCGGATCCAGCTGTACAGCCCCTG...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCGCAGCCTTGCGGAGCTaGTTCTCCCCATTTTTAACC +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIAALRS*FSPFLT
Trigger: GGTTAAAAATGGGGAGAACCAGCTCCGCAAGGCTGC...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAATCCTCTCCAACCCCTTaGCAGGGGCCCAGGTTCTGC +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKSSPTP*QGPRFC
Trigger: GCAGAACCTGGGCCCCTGCCAAGGGGTTGGAGAGGA...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACATTCCCAATGACTACTaGGGCCTGGCCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYIPNDY*GLAWAR
Trigger: CCTGGCCCAGGCCAGGCCCCAGTAGTCATTGGGAAT...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAAATCTTGCAAAGGGACATCGGATTGGGGTTTGTTTaGTTTCTGTGGCAGCAAGTC +
Preference number: 4 (lower is better)
Translates to: ELLHQLRLWCWKILQRDIGLGFV*FLWQQV
Trigger: GACTTGCTGCCACAGAAACCAAACAAACCCCAATCC...GATGTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACGGCCATCCTCTGGGCTaGATTGGGGTTTGTTTGGTT +
Preference number: 4 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINGHPLG*IGVCLV
Trigger: AACCAAACAAACCCCAATCCAGCCCAGAGGATGGCC...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTTACTTGGCCATCCTCTaGGCTGGATTGGGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: FISHGGGKTRSHACLTLSYLAIL*AGLGFV
Trigger: AACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTA...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCTACTTGGCCATCCTCTaGGCTGGATTGGGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKAYLAIL*AGLGFV
Trigger: AACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTA...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTGATACTGTGGCTACTTaGCCATCCTCTGGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGDTVAT*PSSGLD
Trigger: ATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATC...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGGGCTGGACGATACTGTaGCTACTTGGCCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKGWTIL*LLGHPL
Trigger: CAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCC...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACGGCTGGACGATACTGTaGCTACTTGGCCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDGWTIL*LLGHPL
Trigger: CAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCC...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGTCTTGGTCTCTGGGCTaGACGATACTGTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMSWSLG*TILWLL
Trigger: AAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGA...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGCTCCTGTTTTAGGGTaGTCTTTCTTGGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMAPVLG*SFLVSG
Trigger: CCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGC...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHGEALS*DSVVQL
Trigger: CAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCC...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACGGAGATCTGCTGGGATaGAGACAGGCCGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDGDLLG*RQAVPI
Trigger: AATGGGAACGGCCTGTCTCCATCCCAGCAGATCTCC...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGAAAACACTTGGCTTCTaGGTCACTGTTGATACTACA +
Preference number: 4 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLKTLGF*VTVDTT
Trigger: TGTAGTATCAACAGTGACCCAGAAGCCAAGTGTTTT...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTCTCGGATGTTCACGATaGGCTGGGAGTGTAACACGG +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSLGCSR*AGSVTR
Trigger: CCGTGTTACACTCCCAGCCCATCGTGAACATCCGAG...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATATTTCGTGGAGACTTGTaGCAATGGCTTTTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIFRGDL*QWLLLV
Trigger: CACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAA...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATACATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGC +
Preference number: 4 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIHRDSY*SSPVRS
Trigger: GCTCCTTACAGGAGAGGACCAATATGAGTCTCGATG...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGCACCAGCTCCGTCTTTaGTGTTGGAAAATCTACTTG +
Preference number: 4 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLHQLRL*CWKIYL
Trigger: CAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTG...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
CDS-3UTR CCA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTCACCAGCTCCGTCTTTaGTGTTGGAAAATCTACTTG +
Preference number: 4 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATHQLRL*CWKIYL
Trigger: CAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTG...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCTCACACCAGAACACATaGCACTCAAAGCGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGSHQNT*HSKRWF
Trigger: GAACCAGCGCTTTGAGTGCCATGTGTTCTGGTGTGA...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAACATGCAGGCAGCCTaGACAGCTTCTGACACATTG +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKANMQAA*TASDTL
Trigger: CAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTT...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTAACATGCAGGCAGCCTaGACAGCTTCTGACACATTG +
Preference number: 4 (lower is better)
Translates to: KIMLLFISHGGGKTRSHANMQAA*TASDTL
Trigger: CAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTT...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGGACTTTCTGCGAAGGTaGCCTGGCAACCAAGCACTT +
Preference number: 4 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMDFLRR*PGNQAL
Trigger: AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTC...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTACAAAATCTCACAGCCTaGAGACTCCTGTGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVQNLTA*RLLWVG
Trigger: CCCCACCCACAGGAGTCTTCAGGCTGTGAGATTTTG...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AATCTTGGAGCAGATTTCGTGGAGACTTGTGGCAATGGCTTTTGCTGGTGTGTCGGGATCTGTCTGAAATaGGTGATCACTCCAGATATC +
Preference number: 4 (lower is better)
Translates to: NLGADFVETCGNGFCWCVGICLK*VITPDI
Trigger: GATATCTGGAGTGATCACTCATTTCAGACAGATCCC...GACACACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCTGCTCCAAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR TCA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCGTCGGATGCAGTTGTTaGCAGCGACACTGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGVGCSC*QRHCSS
Trigger: GGAAGAGCAGTGTCGCTGTCAACAACTGCATCCGAC...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAGTCGGATGCAGTTGTTaGCAGCGACACTGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVVGCSC*QRHCSS
Trigger: GGAAGAGCAGTGTCGCTGTCAACAACTGCATCCGAC...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACCCCGGATGTCGTTTTTaGAGTAGGAAAGCTGTCGGA +
Preference number: 4 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINPGCRF*SRKAVG
Trigger: TCCGACAGCTTTCCTACTGCAAAAACGACATCCGGG...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp AGTCCAGGCAGAGACGAAGGGCATGTGGCTCTGTGTATATTTTTGATGAAATCACCCGGATGTCGTTTTTaGAGTAGGAAAGCTGTCGGA +
Preference number: 4 (lower is better)
Translates to: SPGRDEGHVALCIFLMKSPGCRF*SRKAVG
Trigger: TCCGACAGCTTTCCTACTGCAAAAACGACATCCGGG...TGATTTCATCAAAAATATACACAGAGCCACATGCCCTTCGTCTCTGCCTGGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACGTTGGAAAATCTACTTaGAAAGGGACATCGAGACTC +
Preference number: 4 (lower is better)
Translates to: APLYITWWRQDEVTCLSNVGKST*KGTSRL
Trigger: GAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAAC...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGATTTGGTGGTGTGGCTaGGCTGTTCCGGTTTGCAAT +
Preference number: 4 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMIWWCG*AVPVCN
Trigger: ATTGCAAACCGGAACAGCCCAGCCACACCACCAAAT...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACATTTGGTGGTGTGGCTaGGCTGTTCCGGTTTGCAAT +
Preference number: 4 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINIWWCG*AVPVCN
Trigger: ATTGCAAACCGGAACAGCCCAGCCACACCACCAAAT...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCATTTGGTGGTGTGGCTaGGCTGTTCCGGTTTGCAAT +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIIWWCG*AVPVCN
Trigger: ATTGCAAACCGGAACAGCCCAGCCACACCACCAAAT...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCGAGATTGAGGGTATTTaGTGGTGTGGCTGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIEIEGI*WCGWAV
Trigger: AACAGCCCAGCCACACCACCAAATACCCTCAATCTC...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTTTGGTGTTGGAAAATCTTGCAAAGGGACATCGAGACTCATATTGGTCCTCTCTTAGTTCTCCTGGGCTaGGAGGGCAAAATCTCACAG +
Preference number: 4 (lower is better)
Translates to: LWCWKILQRDIETHIGPLLVLLG*EGKISQ
Trigger: CTGTGAGATTTTGCCCTCCCAGCCCAGGAGAACTAA...GAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTTTAGTTCTCCTGGGCTaGGAGGGCAAAATCTCACAG +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGLVLLG*EGKISQ
Trigger: CTGTGAGATTTTGCCCTCCCAGCCCAGGAGAACTAA...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACGGCCATCCTCTGGGCTaGATTGGGGTTTGTTTGGTT +
Preference number: 4 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDGHPLG*IGVCLV
Trigger: AACCAAACAAACCCCAATCCAGCCCAGAGGATGGCC...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCTTGTGGTGCTCTGTATTCTCTTGGTCTCTGGGCTaGACGATACTGTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: MNFGGFLSHFVSLWCSVFSWSLG*TILWLL
Trigger: AAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGA...GAATACAGAGCACCACAAGCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCGCTCCTGTTTTAGGGTaGTCTTTCTTGGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIAPVLG*SFLVSG
Trigger: CCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGC...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCTTGAGTCGTCCCTGTTaGGATGTGCCAGTAATAGGT +
Preference number: 4 (lower is better)
Translates to: KIKSLETKHRQLSGRPGILSRPC*DVPVIG
Trigger: ACCTATTACTGGCACATCCCAACAGGGACGACTCAA...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATTGAGTCGTCCCTGTTaGGATGTGCCAGTAATAGGT +
Preference number: 4 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSLSRPC*DVPVIG
Trigger: ACCTATTACTGGCACATCCCAACAGGGACGACTCAA...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGCTCGGATGTTCACGATaGGCTGGGAGTGTAACACGG +
Preference number: 4 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMLGCSR*AGSVTR
Trigger: CCGTGTTACACTCCCAGCCCATCGTGAACATCCGAG...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGCAATGGCTTTTGCTaGTGTGTCACATCGAAACAC +
Preference number: 4 (lower is better)
Translates to: FISHGGGKTRSHACLTLSGNGFC*CVTSKH
Trigger: GTGTTTCGATGTGACACACCAGCAAAAGCCATTGCC...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCTTTCGTGGAGACTTGTaGCAATGGCTTTTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKAFRGDL*QWLLLV
Trigger: CACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAA...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCCATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGC +
Preference number: 4 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGHRDSY*SSPVRS
Trigger: GCTCCTTACAGGAGAGGACCAATATGAGTCTCGATG...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTGGCACTCAAAGCGCTaGTTCCCAGTGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSWHSKR*FPVSMM
Trigger: CATCATGGACACTGGGAACCAGCGCTTTGAGTGCCA...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACTGGCACTCAAAGCGCTaGTTCCCAGTGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDWHSKR*FPVSMM
Trigger: CATCATGGACACTGGGAACCAGCGCTTTGAGTGCCA...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCAACATGCAGGCAGCCTaGACAGCTTCTGACACATTG +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRINMQAA*TASDTL
Trigger: CAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTT...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGCAAATCCTCATTCTCTaGGGTGGGCGATGGCGTTAC +
Preference number: 4 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKQILIL*GGRWRY
Trigger: GTAACGCCATCGCCCACCCCAGAGAATGAGGATTTG...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTCAAATCCTCATTCTCTaGGGTGGGCGATGGCGTTAC +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSQILIL*GGRWRY
Trigger: GTAACGCCATCGCCCACCCCAGAGAATGAGGATTTG...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGAGGCCCATGGCCGCCTaGATATTAGTCAGTGCATAT +
Preference number: 4 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKRPMAA*ILVSAY
Trigger: ATATGCACTGACTAATATTCAGGCGGCCATGGGCCT...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGGATCTGTCTGAAATaGGTGATCACTCCAGATATC +
Preference number: 4 (lower is better)
Translates to: KIKSLETKHRQLSGRPGIGICLK*VITPDI
Trigger: GATATCTGGAGTGATCACTCATTTCAGACAGATCCC...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCTGCTGGATGACGTCATaGGATTTTCTATGGCACTGT +
Preference number: 4 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGCWMTS*DFLWHC
Trigger: ACAGTGCCATAGAAAATCTCATGACGTCATCCAGCA...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTGTCCTCCTTGCTGGATaGCGTCATGAGATTTTCTAT +
Preference number: 4 (lower is better)
Translates to: KIMLLFISHGGGKTRSHAVLLAG*RHEIFY
Trigger: ATAGAAAATCTCATGACGTCATCCAGCAAGGAGGAC...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGTTTCAAAGTGTCAATaGGGGATAAGACCCCTCGTT +
Preference number: 4 (lower is better)
Translates to: FISHGGGKTRSHACLTLSVSKCQ*GIRPLV
Trigger: AACGAGGGGTCTTATCCCTCATTGACACTTTGAAAC...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCTGGGCTGTTCCGGTTTaGAATGTCTGTGGATCCGCT +
Preference number: 4 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGWAVPV*NVCGSA
Trigger: AGCGGATCCACAGACATTGCAAACCGGAACAGCCCA...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAATTCTTGTTGGGGTCCTaGTGCCCCTGTTCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKFLLGS*CPCSAA
Trigger: GGCTGCAGAACAGGGGCAGCAGGACCCCAACAAGAA...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCCGAGGTTTCCAGGTCTaGATAGTAATTGAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKARGFQV*IVIEEA
Trigger: AGCTTCCTCAATTACTATGCAGACCTGGAAACCTCG...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTCGAGGTTTCCAGGTCTaGATAGTAATTGAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: FISHGGGKTRSHACLTLSRGFQV*IVIEEA
Trigger: AGCTTCCTCAATTACTATGCAGACCTGGAAACCTCG...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGTGTGGCAATGGCTTTTaGTGGTGTGTCACATCGAAA +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMCGNGF*WCVTSK
Trigger: TTTCGATGTGACACACCAGCAAAAGCCATTGCCACA...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTTCTGGGTATTTGGTGGTGTaGCTGGGCTGTTCCGGTTTG +
Preference number: 4 (lower is better)
Translates to: AAEIKIRDRDNGILNSFSGYLVV*LGCSGL
Trigger: CAAACCGGAACAGCCCAGCCACACCACCAAATACCC...AGAAAAACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTTTAGTTCTCCTGGGCTaGGAGGGCAAAATCTCACAG +
Preference number: 4 (lower is better)
Translates to: RQDEVTCLSNTVWLKIKSLVLLG*EGKISQ
Trigger: CTGTGAGATTTTGCCCTCCCAGCCCAGGAGAACTAA...AGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTCTTGGTCTCTGGGCTaGACGATACTGTGGCTACTT +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSSWSLG*TILWLL
Trigger: AAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGA...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATTTTCATCTGGGGAGCTaGGGGAGGCACTGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHFHLGS*GRHCLG
Trigger: CCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAA...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCTTGAGTCGTCCCTGTTaGGATGTGCCAGTAATAGGT +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRILSRPC*DVPVIG
Trigger: ACCTATTACTGGCACATCCCAACAGGGACGACTCAA...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAGGTAAAACATCAGCATCCTCTCACAGACAAATACAAACAGACTTCCATACATGGAGATCTGCTGGGATaGAGACAGGCCGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: QVKHQHPLTDKYKQTSIHGDLLG*RQAVPI
Trigger: AATGGGAACGGCCTGTCTCCATCCCAGCAGATCTCC...ATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGCTGATGTTTTACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTATCTCATTCTCTGGGGTaGGCGATGGCGTTACAGAAC +
Preference number: 4 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVSHSLG*AMALQN
Trigger: GTTCTGTAACGCCATCGCCCACCCCAGAGAATGAGA...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087256.12
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp TCCTCCTTGCTGGATGACGTCATGAGATTTTCTATGGCACTGTTCAGGGTGTCCAAAACACTTGGCTTCTaGGTCACTGTTGATACTACA +
Preference number: 4 (lower is better)
Translates to: SSLLDDVMRFSMALFRVSKTLGF*VTVDTT
Trigger: TGTAGTATCAACAGTGACCCAGAAGCCAAGTGTTTT...GGACACCCTGAACAGTGCCATAGAAAATCTCATGACGTCATCCAGCAAGGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTGGCAATGGCTTTTGCTaGTGTGTCACATCGAAACAC +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGGNGFC*CVTSKH
Trigger: GTGTTTCGATGTGACACACCAGCAAAAGCCATTGCC...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTTTTCGTGGAGACTTGTaGCAATGGCTTTTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGFRGDL*QWLLLV
Trigger: CACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAA...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTCACCAGCTCCGTCTTTaGTGTTGGAAAATCTACTTG +
Preference number: 4 (lower is better)
Translates to: KIMLLFISHGGGKTRSHAHQLRL*CWKIYL
Trigger: CAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTG...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCATGAAGGCGAATGTGTaGACATCCTTCCCGACACCC +
Preference number: 4 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGMKANV*TSFPTP
Trigger: GGGTGTCGGGAAGGATGTCCACACATTCGCCTTCAT...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTAACATGCAGGCAGCCTaGACAGCTTCTGACACATTG +
Preference number: 4 (lower is better)
Translates to: RQDEVTCLSNTVWLKIKSNMQAA*TASDTL
Trigger: CAATGTGTCAGAAGCTGTCCAGGCTGCCTGCATGTT...AGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTATCTGCGAAGGTGGCCTaGCAACCAAGCACTTCTGAT +
Preference number: 4 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVSAKVA*QPSTSD
Trigger: ATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGA...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGACTTTCTGCGAAGGTaGCCTGGCAACCAAGCACTT +
Preference number: 4 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMDFLRR*PGNQAL
Trigger: AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTC...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAACAAAATCTCACAGCCTaGAGACTCCTGTGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKQNLTA*RLLWVG
Trigger: CCCCACCCACAGGAGTCTTCAGGCTGTGAGATTTTG...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTGGGATCTGTCTGAAATaGGTGATCACTCCAGATATC +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGGICLK*VITPDI
Trigger: GATATCTGGAGTGATCACTCATTTCAGACAGATCCC...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAAGTCGGATGCAGTTGTTaGCAGCGACACTGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKVGCSC*QRHCSS
Trigger: GGAAGAGCAGTGTCGCTGTCAACAACTGCATCCGAC...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCGTTTCAAAGTGTCAATaGGGGATAAGACCCCTCGTT +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIVSKCQ*GIRPLV
Trigger: AACGAGGGGTCTTATCCCTCATTGACACTTTGAAAC...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTGTTTCAAAGTGTCAATaGGGGATAAGACCCCTCGTT +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGVSKCQ*GIRPLV
Trigger: AACGAGGGGTCTTATCCCTCATTGACACTTTGAAAC...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTTGTGGCAATGGCTTTTaGTGGTGTGTCACATCGAAA +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGCGNGF*WCVTSK
Trigger: TTTCGATGTGACACACCAGCAAAAGCCATTGCCACA...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACTGTCTACAGGTAACATaGCCAGGTACTGCACGCGGA +
Preference number: 4 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYCLQVT*PGTARG
Trigger: TCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACA...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCGAGATTGAGGGTATTTaGTGGTGTGGCTGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGEIEGI*WCGWAV
Trigger: AACAGCCCAGCCACACCACCAAATACCCTCAATCTC...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGAGATTGAGGGTATTTaGTGGTGTGGCTGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMEIEGI*WCGWAV
Trigger: AACAGCCCAGCCACACCACCAAATACCCTCAATCTC...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTTCTGCAGCCTTGCGGAGCTaGTTCTCCCCATTTTTAACC +
Preference number: 4 (lower is better)
Translates to: AAEIKIRDRDNGILNSFSAALRS*FSPFLT
Trigger: GGTTAAAAATGGGGAGAACCAGCTCCGCAAGGCTGC...AGAAAAACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATTGGGGTTTGTTTaGTTTCTGTGGCAGCAAGTC +
Preference number: 4 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSGLGFV*FLWQQV
Trigger: GACTTGCTGCCACAGAAACCAAACAAACCCCAATCC...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCTACTTGGCCATCCTCTaGGCTGGATTGGGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGYLAIL*AGLGFV
Trigger: AACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTA...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACGATACTGTGGCTACTTaGCCATCCTCTGGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYDTVAT*PSSGLD
Trigger: ATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATC...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAAGGCTGGACGATACTGTaGCTACTTGGCCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKGWTIL*LLGHPL
Trigger: CAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCC...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCTCCTGTTTTAGGGTaGTCTTTCTTGGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMAPVLG*SFLVSG
Trigger: CCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGC...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGTTCTGGATCCGATaGAGGGCACAGTCGGTTTTG +
Preference number: 4 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYRFWIR*RAQSVL
Trigger: CAAAACCGACTGTGCCCTCCATCGGATCCAGAACCT...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATGGATTCCTCGTCACTTaGTGCCAGGTTCTGGATCCG +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHGFLVT*CQVLDP
Trigger: CGGATCCAGAACCTGGCACCAAGTGACGAGGAATCC...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAACCTTTCCTAGAGCCGTaGAGATCTGCTGGGATGGAG +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKPFLEP*RSAGME
Trigger: CTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGG...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACGGCAATGGCTTTTGCTaGTGTGTCACATCGAAACAC +
Preference number: 4 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDGNGFC*CVTSKH
Trigger: GTGTTTCGATGTGACACACCAGCAAAAGCCATTGCC...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTGGCAATGGCTTTTGCTaGTGTGTCACATCGAAACAC +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSGNGFC*CVTSKH
Trigger: GTGTTTCGATGTGACACACCAGCAAAAGCCATTGCC...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTCATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGC +
Preference number: 4 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSHRDSY*SSPVRS
Trigger: GCTCCTTACAGGAGAGGACCAATATGAGTCTCGATG...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCCTCCGTCTTTGGTGTTaGAAAATCTACTTGCAAAGG +
Preference number: 4 (lower is better)
Translates to: KIKSLETKHRQLSGRPGILRLWC*KIYLQR
Trigger: CCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAG...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCACCAGCTCCGTCTTTaGTGTTGGAAAATCTACTTG +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIHQLRL*CWKIYL
Trigger: CAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTG...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp CAGGTAAAACATCAGCATCCTCTCACAGACAAATACAAACAGACTTCCATACATTCTGCGAAGGTGGCCTaGCAACCAAGCACTTCTGAT +
Preference number: 4 (lower is better)
Translates to: QVKHQHPLTDKYKQTSIHSAKVA*QPSTSD
Trigger: ATCAGAAGTGCTTGGTTGCCAGGCCACCTTCGCAGA...ATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGCTGATGTTTTACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTTCTGACTTTCTGCGAAGGTaGCCTGGCAACCAAGCACTT +
Preference number: 4 (lower is better)
Translates to: AAEIKIRDRDNGILNSFSDFLRR*PGNQAL
Trigger: AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTC...AGAAAAACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
3UTR CAA 72 bp GGGAGTTTTGGGGGCTGCAAGTTAAGAGGCCCAGTTTaGAGTAGTTTGTTATGTGTCCTTCTTAAACACCTA +
Preference number: 4 (lower is better)
Translates to: GSFGGCKLRGPV*SSLLCVLLKHL
Trigger: TAGGTGTTTAAGAAGGACACATAACAAACTACTCAAAACTGGGCCTCTTAACTTGCAGCCCCCAAAACTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTTGCTGGATGACGTCATaGGATTTTCTATGGCACTGT +
Preference number: 4 (lower is better)
Translates to: RQDEVTCLSNTVWLKIKSCWMTS*DFLWHC
Trigger: ACAGTGCCATAGAAAATCTCATGACGTCATCCAGCA...AGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTGTCCTCCTTGCTGGATaGCGTCATGAGATTTTCTAT +
Preference number: 4 (lower is better)
Translates to: RQDEVTCLSNTVWLKIKSVLLAG*RHEIFY
Trigger: ATAGAAAATCTCATGACGTCATCCAGCAAGGAGGAC...AGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTGTTGGAAAATCTACTTaGAAAGGGACATCGAGACTC +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGVGKST*KGTSRL
Trigger: GAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAAC...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR GCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAATGTCTACAGGTAACATaGCCAGGTACTGCACGCGGA +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKCLQVT*PGTARG
Trigger: TCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACA...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAAATTGAGGGTATTTGGTaGTGTGGCTGGGCTGTTCCG +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKIEGIW*CGWAVP
Trigger: CGGAACAGCCCAGCCACACCACCAAATACCCTCAAT...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTTCTTTAGTTCTCCTGGGCTaGGAGGGCAAAATCTCACAG +
Preference number: 4 (lower is better)
Translates to: AAEIKIRDRDNGILNSFSLVLLG*EGKISQ
Trigger: CTGTGAGATTTTGCCCTCCCAGCCCAGGAGAACTAA...AGAAAAACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAAGGCCATCCTCTGGGCTaGATTGGGGTTTGTTTGGTT +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKGHPLG*IGVCLV
Trigger: AACCAAACAAACCCCAATCCAGCCCAGAGGATGGCC...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTTCTTACTTGGCCATCCTCTaGGCTGGATTGGGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: AAEIKIRDRDNGILNSFSYLAIL*AGLGFV
Trigger: AACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTA...AGAAAAACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACGCTCCTGTTTTAGGGTaGTCTTTCTTGGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYAPVLG*SFLVSG
Trigger: CCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGC...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAAAACACTTGGCTTCTaGGTCACTGTTGATACTACA +
Preference number: 4 (lower is better)
Translates to: LVKDKISGDKASATEWKAKTLGF*VTVDTT
Trigger: TGTAGTATCAACAGTGACCCAGAAGCCAAGTGTTTT...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAGGCAATGGCTTTTGCTaGTGTGTCACATCGAAACAC +
Preference number: 4 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVGNGFC*CVTSKH
Trigger: GTGTTTCGATGTGACACACCAGCAAAAGCCATTGCC...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTATTTCGTGGAGACTTGTaGCAATGGCTTTTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVFRGDL*QWLLLV
Trigger: CACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAA...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCTCCGTCTTTGGTGTTaGAAAATCTACTTGCAAAGG +
Preference number: 4 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRILRLWC*KIYLQR
Trigger: CCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAG...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTCTCCGTCTTTGGTGTTaGAAAATCTACTTGCAAAGG +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGLRLWC*KIYLQR
Trigger: CCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAG...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATGACTTTCTGCGAAGGTaGCCTGGCAACCAAGCACTT +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHDFLRR*PGNQAL
Trigger: AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTC...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCAAATCCTCATTCTCTaGGGTGGGCGATGGCGTTAC +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHQILIL*GGRWRY
Trigger: GTAACGCCATCGCCCACCCCAGAGAATGAGGATTTG...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTTGGCATCTGAGTGTTTaGTCTCTGCATTTAATAGTT +
Preference number: 4 (lower is better)
Translates to: VCSEVLFTIFTRRRPSAAWHLSV*SLHLIV
Trigger: AACTATTAAATGCAGAGATCAAACACTCAGATGCCA...AGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGGCATCTGAGTGTTTaGTCTCTGCATTTAATAGTT +
Preference number: 4 (lower is better)
Translates to: KIMLLFISHGGGKTRSHAWHLSV*SLHLIV
Trigger: AACTATTAAATGCAGAGATCAAACACTCAGATGCCA...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGTGGCATCTGAGTGTTTaGTCTCTGCATTTAATAGTT +
Preference number: 4 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMWHLSV*SLHLIV
Trigger: AACTATTAAATGCAGAGATCAAACACTCAGATGCCA...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTG +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHRYRTK*PFPRAV
Trigger: CACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACG...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTAAAACACTTGGCTTCTaGGTCACTGTTGATACTACA +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGKTLGF*VTVDTT
Trigger: TGTAGTATCAACAGTGACCCAGAAGCCAAGTGTTTT...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGCTCCGTCTTTGGTGTTaGAAAATCTACTTGCAAAGG +
Preference number: 4 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKLRLWC*KIYLQR
Trigger: CCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAG...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
CDS-3UTR CCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAATCACACCAGAACACATaGCACTCAAAGCGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKSHQNT*HSKRWF
Trigger: GAACCAGCGCTTTGAGTGCCATGTGTTCTGGTGTGA...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTTGGCATCTGAGTGTTTaGTCTCTGCATTTAATAGTT +
Preference number: 4 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGWHLSV*SLHLIV
Trigger: AACTATTAAATGCAGAGATCAAACACTCAGATGCCA...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACTGGCATCTGAGTGTTTaGTCTCTGCATTTAATAGTT +
Preference number: 4 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINWHLSV*SLHLIV
Trigger: AACTATTAAATGCAGAGATCAAACACTCAGATGCCA...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CAGGTAAAACATCAGCATCCTCTCACAGACAAATACAAACAGACTTCCATACATGGGATCTGTCTGAAATaGGTGATCACTCCAGATATC +
Preference number: 4 (lower is better)
Translates to: QVKHQHPLTDKYKQTSIHGICLK*VITPDI
Trigger: GATATCTGGAGTGATCACTCATTTCAGACAGATCCC...ATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGCTGATGTTTTACCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTACTTCTGGGTCACTGTTaGTACTACAAGAATCATCGT +
Preference number: 4 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVLLGHC*YYKNHR
Trigger: ACGATGATTCTTGTAGTATCAACAGTGACCCAGAAG...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGCTTCTGGGTCACTGTTaGTACTACAAGAATCATCGT +
Preference number: 4 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMLLGHC*YYKNHR
Trigger: ACGATGATTCTTGTAGTATCAACAGTGACCCAGAAG...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATGGATTGGGGTTTGTTTaGTTTCTGTGGCAGCAAGTC +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHGLGFV*FLWQQV
Trigger: GACTTGCTGCCACAGAAACCAAACAAACCCCAATCC...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGAAAACACTTGGCTTCTaGGTCACTGTTGATACTACA +
Preference number: 4 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKKTLGF*VTVDTT
Trigger: TGTAGTATCAACAGTGACCCAGAAGCCAAGTGTTTT...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGC +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHHRDSY*SSPVRS
Trigger: GCTCCTTACAGGAGAGGACCAATATGAGTCTCGATG...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTACTCCGTCTTTGGTGTTaGAAAATCTACTTGCAAAGG +
Preference number: 4 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVLRLWC*KIYLQR
Trigger: CCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAG...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CCA 90 bp GCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTTCTCTCCGTCTTTGGTGTTaGAAAATCTTGCAAAGGGAC +
Preference number: 4 (lower is better)
Translates to: AAEIKIRDRDNGILNSFSLRLWC*KILQRD
Trigger: GTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAG...AGAAAAACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATTGCTGGATGACGTCATaGGATTTTCTATGGCACTGT +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHCWMTS*DFLWHC
Trigger: ACAGTGCCATAGAAAATCTCATGACGTCATCCAGCA...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAATGCTGGATGACGTCATaGGATTTTCTATGGCACTGT +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKCWMTS*DFLWHC
Trigger: ACAGTGCCATAGAAAATCTCATGACGTCATCCAGCA...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR GCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAATGTGGCAATGGCTTTTaGTGGTGTGTCACATCGAAA +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKCGNGF*WCVTSK
Trigger: TTTCGATGTGACACACCAGCAAAAGCCATTGCCACA...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CCA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAACACCAGCTCCGTCTTTaGTGTTGGAAAATCTACTTG +
Preference number: 4 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKHQLRL*CWKIYL
Trigger: CAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTG...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR GCA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATGTTGGAAAATCTACTTaGAAAGGGACATCGAGACTC +
Preference number: 4 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHVGKST*KGTSRL
Trigger: GAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAAC...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
3UTR CAA 72 bp AGAATGGCCATAGTACACTTTAATTCTCTAGCTGCATaGTACAGTGTAAGGCAGAAGTTTGAAATACGTTCC +
Preference number: 4 (lower is better)
Translates to: RMAIVHFNSLAA*YSVRQKFEIRS
Trigger: GGAACGTATTTCAAACTTCTGCCTTACACTGTACAATGCAGCTAGAGAATTAAAGTGTACTATGGCCATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR TCA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACTGGCATCTGAGTGTTTaGTCTCTGCATTTAATAGTT +
Preference number: 4 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYWHLSV*SLHLIV
Trigger: AACTATTAAATGCAGAGATCAAACACTCAGATGCCA...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CCCGACACCCATGAAGGACAGGAACCGCACTCGACACTCCACCAAGACCTCCTCGCAGGGCTGAGGTTCTaGTTGGGGTCCTGCTGCCCC +
Preference number: 5 (lower is better)
Translates to: PDTHEGQEPHSTLHQDLLAGLRF*LGSCCP
Trigger: GGGGCAGCAGGACCCCAACAAGAACCTCAGCCCTGC...GAGGAGGTCTTGGTGGAGTGTCGAGTGCGGTTCCTGTCCTTCATGGGTGTCGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCGCAAAGTCCCGGCCGTaGTCTCGGCCCACGCCCCAC +
Preference number: 5 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTAKSRP*SRPTPH
Trigger: GTGGGGCGTGGGCCGAGACAACGGCCGGGACTTTGC...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCCCTCTCTCGGCCGTaGTCTCGGCCCACGCCCCAC +
Preference number: 5 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGSLSRP*SRPTPH
Trigger: GTGGGGCGTGGGCCGAGACAACGGCCGAGAGAGGGA...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp TGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTGGCCTGGCAACCAAGCACTTTTAGGGTGGTCTTTCTaGGTCTCTGGGCTGGACGAT +
Preference number: 5 (lower is better)
Translates to: WRGRGPDFLRRWPGNQALLGWSF*VSGLDD
Trigger: ATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAA...AAGTGCTTGGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp CTTCGGGTCACTGAATCTGCTGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTTGGGAGGAACGGAGATaGAGGGTATTTGGTGGTGTG +
Preference number: 5 (lower is better)
Translates to: LRVTESAGGGGGRTFCEGWEERR*RVFGGV
Trigger: CACACCACCAAATACCCTCAATCTCCGTTCCTCCCA...ACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCAGCAGATTCAGTGACCCGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCGGGGGAGGCACTGTCTaGGGACAGCGTCGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTGGGTV*GQRRPA
Trigger: AGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCC...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 90 bp GGCACTGTCTTGGGACAGCGTCGTCCAGCTGGATTCCTCGTCACTTaGTGCCAGGTTCTGGATCCGATGGAGGGCACAGTCGGTTTTGGC +
Preference number: 5 (lower is better)
Translates to: GTVLGQRRPAGFLVT*CQVLDPMEGTVGFG
Trigger: GCCAAAACCGACTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAGTGACGAGGAATCCAGCTGGACGACGCTGTCCCAAGACAGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCCCCTGTTCTGCAGCCTaGCGGAGCTGGTTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTPCSAA*RSWFSP
Trigger: TGGGGAGAACCAGCTCCGCAAGGCTGCAGAACAGGG...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCGGGCTGAGGTTCTTGTaGGGGTCCTGCTGCCCCTGT +
Preference number: 5 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTGLRFL*GSCCPC
Trigger: ACAGGGGCAGCAGGACCCCAACAAGAACCTCAGCCC...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCAGTGCCAACGGGCTGGATTGGGGTTaGTTTGGTTTCTGTGGCAGC +
Preference number: 5 (lower is better)
Translates to: GSGRCGCLAMSSPPCSANGLDWG*FGFCGS
Trigger: GCTGCCACAGAAACCAAACAAACCCCAATCCAGCCC...GTTGGCACTGCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCCGATACTGTGGCTACTaGGCCATCCTCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCRYCGY*AILWAG
Trigger: TCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCG...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTGGGGGAGGCACTGTCTaGGGACAGCGTCGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSGGGTV*GQRRPA
Trigger: AGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCC...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGCAAAGTCCCGGCCGTaGTCTCGGCCCACGCCCCAC +
Preference number: 5 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCAKSRP*SRPTPH
Trigger: GTGGGGCGTGGGCCGAGACAACGGCCGGGACTTTGC...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS TCA 90 bp TGGGCTGGGAGTGTAACACGGAGCGGTCCATGGGGTCCACCAGGCTaGGCATGTCGTTTTCCAGGCTCAGGTACATGTCTTTGCCCTCTC +
Preference number: 5 (lower is better)
Translates to: WAGSVTRSGPWGPPG*ACRFPGSGTCLCPL
Trigger: GAGAGGGCAAAGACATGTACCTGAGCCTGGAAAACGACATGCTCAGCCTGGTGGACCCCATGGACCGCTCCGTGTTACACTCCCAGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 90 bp CTCCAGATATCTGTTTCATCTGGGGAGCTGGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTGGATTCCTCGTCACTTGGTGCCAGG +
Preference number: 5 (lower is better)
Translates to: LQISVSSGELGEALS*DSVVQLDSSSLGAR
Trigger: CCTGGCACCAAGTGACGAGGAATCCAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAACAGATATCTGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 90 bp CAGATATCTGCTGTTTCATCTGGGGAGCTGGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTGGATTCCTCGTCACTTGGTGCCAGG +
Preference number: 5 (lower is better)
Translates to: QISAVSSGELGEALS*DSVVQLDSSSLGAR
Trigger: CCTGGCACCAAGTGACGAGGAATCCAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAACAGCAGATATCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159512.8
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp GAATCTGCTGGCGGGGGCGGGGGCCGGACTTTCTGCGAAGGTGGCCTGGCAACCGCATTTAATAGTTCATaGTGGGAGGAACGGAGATTG +
Preference number: 5 (lower is better)
Translates to: ESAGGGGGRTFCEGGLATAFNSS*WEERRL
Trigger: CAATCTCCGTTCCTCCCACAATGAACTATTAAATGC...GGTTGCCAGGCCACCTTCGCAGAAAGTCCGGCCCCCGCCCCCGCCAGCAGATTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTGGGCTGAGGTTCTTGTaGGGGTCCTGCTGCCCCTGT +
Preference number: 5 (lower is better)
Translates to: LARKGVAAFFCVCARKSCGLRFL*GSCCPC
Trigger: ACAGGGGCAGCAGGACCCCAACAAGAACCTCAGCCC...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCGGGCTGGATTGGGGTTaGTTTGGTTTCTGTGGCAGC +
Preference number: 5 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCGLDWG*FGFCGS
Trigger: GCTGCCACAGAAACCAAACAAACCCCAATCCAGCCC...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCTGGATTCCTCGTCACTaGGTGCCAGGTTCTGGATCC +
Preference number: 5 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCWIPRH*VPGSGS
Trigger: GGATCCAGAACCTGGCACCAAGTGACGAGGAATCCA...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTAGTCCCGGCAATGTCATaGACTCTCTTCCAGCCCGGC +
Preference number: 5 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLVPAMS*TLFQPG
Trigger: GCCGGGCTGGAAGAGAGTCAATGACATTGCCGGGAC...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GGACAAAGAGCAGAGAGAGGCTGGGGCAGTGGCGGAATCCCAGGAGTGCATTTACTGCAGGCCAGTGCTTaGGCGTTCTTCCGTTCAGCC +
Preference number: 5 (lower is better)
Translates to: GQRAERGWGSGGIPGVHLLQASA*AFFRSA
Trigger: GGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCAG...TAAATGCACTCCTGGGATTCCGCCACTGCCCCAGCCTCTCTCTGCTCTTTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCACCCCTCGTTTCACATaGGTCGTGACTCTTCGGGTC +
Preference number: 5 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCTPRFT*VVTLRV
Trigger: GACCCGAAGAGTCACGACCAATGTGAAACGAGGGGT...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGGCAAAGTCCCGGCCGTaGTCTCGGCCCACGCCCCAC +
Preference number: 5 (lower is better)
Translates to: DKISGDKASATEWKARYRAKSRP*SRPTPH
Trigger: GTGGGGCGTGGGCCGAGACAACGGCCGGGACTTTGC...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS CCA 90 bp GACAGCGTCGTCCAGCTGGATTCCTCGTCACTTGGTGCCAGGTTCTaGATCCGATGGAGGGCACAGTCGGTTTTGGCTCCTGTTTTAGGG +
Preference number: 5 (lower is better)
Translates to: DSVVQLDSSSLGARF*IRWRAQSVLAPVLG
Trigger: CCCTAAAACAGGAGCCAAAACCGACTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAGTGACGAGGAATCCAGCTGGACGACGCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGCAGGGCTGAGGTTCTaGTTGGGGTCCTGCTGCCCC +
Preference number: 5 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSAGLRF*LGSCCP
Trigger: GGGGCAGCAGGACCCCAACAAGAACCTCAGCCCTGC...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCCGATACTGTGGCTACTaGGCCATCCTCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTRYCGY*AILWAG
Trigger: TCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCG...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCCCCTGTTCTGCAGCCTaGCGGAGCTGGTTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFPCSAA*RSWFSP
Trigger: TGGGGAGAACCAGCTCCGCAAGGCTGCAGAACAGGG...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACGCAGGGCTGAGGTTCTaGTTGGGGTCCTGCTGCCCC +
Preference number: 5 (lower is better)
Translates to: APLYITWWRQDEVTCLSNAGLRF*LGSCCP
Trigger: GGGGCAGCAGGACCCCAACAAGAACCTCAGCCCTGC...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAGGGCACAGTCGGTTTaGGCTCCTGTTTTAGGGTGG +
Preference number: 5 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTRAQSV*APVLGW
Trigger: CCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCT...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTGGATTCCTCGTCACTaGGTGCCAGGTTCTGGATCC +
Preference number: 5 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGWIPRH*VPGSGS
Trigger: GGATCCAGAACCTGGCACCAAGTGACGAGGAATCCA...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGGTCCCGGCAATGTCATaGACTCTCTTCCAGCCCGGC +
Preference number: 5 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLVPAMS*TLFQPG
Trigger: GCCGGGCTGGAAGAGAGTCAATGACATTGCCGGGAC...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCGAAGGCCAGTCCTCCTaGCTGGATGACGTCATGAGA +
Preference number: 5 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTEGQSS*LDDVMR
Trigger: TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTC...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 90 bp CTGGGCTGGGAGGGCAAAATCTCACAGCCTGAAGACTCCTGTGGGTaGGGATCTTTAACCTCCAGCTTCTCGGAGGTTAGGTTGATGACG +
Preference number: 5 (lower is better)
Translates to: LGWEGKISQPEDSCG*GSLTSSFSEVRLMT
Trigger: CGTCATCAACCTAACCTCCGAGAAGCTGGAGGTTAAAGATCCCCACCCACAGGAGTCTTCAGGCTGTGAGATTTTGCCCTCCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 90 bp CTTGGTCTCTGGGCTGGACGATACTGTGGCTACTTGGCCATCCTCTaGGCTGGATTGGGGTTTGTTTGGTTTCTGTGGCAGCAAGTCACC +
Preference number: 5 (lower is better)
Translates to: LGLWAGRYCGYLAIL*AGLGFVWFLWQQVT
Trigger: GGTGACTTGCTGCCACAGAAACCAAACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCTGGGAGGAACGGAGATaGAGGGTATTTGGTGGTGTG +
Preference number: 5 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTWEERR*RVFGGV
Trigger: CACACCACCAAATACCCTCAATCTCCGTTCCTCCCA...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTCCCTGTTCTGCAGCCTaGCGGAGCTGGTTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATPCSAA*RSWFSP
Trigger: TGGGGAGAACCAGCTCCGCAAGGCTGCAGAACAGGG...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGGGGCTGAGGTTCTTGTaGGGGTCCTGCTGCCCCTGT +
Preference number: 5 (lower is better)
Translates to: DKISGDKASATEWKARYRGLRFL*GSCCPC
Trigger: ACAGGGGCAGCAGGACCCCAACAAGAACCTCAGCCC...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CCCGACACCCATGAAGGACAGGAACCGCACTCGACACTCCACCAAGACCTCCTCTGGATTGGGGTTTGTTaGGTTTCTGTGGCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: PDTHEGQEPHSTLHQDLLWIGVC*VSVAAS
Trigger: ACTTGCTGCCACAGAAACCAAACAAACCCCAATCCA...GAGGAGGTCTTGGTGGAGTGTCGAGTGCGGTTCCTGTCCTTCATGGGTGTCGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGGGGCTGGATTGGGGTTaGTTTGGTTTCTGTGGCAGC +
Preference number: 5 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRGLDWG*FGFCGS
Trigger: GCTGCCACAGAAACCAAACAAACCCCAATCCAGCCC...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAGGGCACAGTCGGTTTaGGCTCCTGTTTTAGGGTGG +
Preference number: 5 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHRAQSV*APVLGW
Trigger: CCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCT...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTATGGATTCCTCGTCACTaGGTGCCAGGTTCTGGATCC +
Preference number: 5 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLWIPRH*VPGSGS
Trigger: GGATCCAGAACCTGGCACCAAGTGACGAGGAATCCA...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCTTGTGGCAATGGCTTTaGCTGGTGTGTCACATCGAA +
Preference number: 5 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCLWQWL*LVCHIE
Trigger: TTCGATGTGACACACCAGCAAAAGCCATTGCCACAA...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTCTGCAGGCCAGTGCTTaGGCGTTCTTCCGTTCAGCC +
Preference number: 5 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSLQASA*AFFRSA
Trigger: GGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCAG...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTCTGCAGGCCAGTGCTTaGGCGTTCTTCCGTTCAGCC +
Preference number: 5 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCLQASA*AFFRSA
Trigger: GGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCAG...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCAGTGCCAACGCTCCGTCTTTGGTGTaGGAAAATCTACTTGCAAAG +
Preference number: 5 (lower is better)
Translates to: GSGRCGCLAMSSPPCSANAPSLV*ENLLAK
Trigger: CTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGC...GTTGGCACTGCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
CDS-3UTR CAA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTACCCCTCGTTTCACATaGGTCGTGACTCTTCGGGTC +
Preference number: 5 (lower is better)
Translates to: LARKGVAAFFCVCARKSCTPRFT*VVTLRV
Trigger: GACCCGAAGAGTCACGACCAATGTGAAACGAGGGGT...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGACCCCTCGTTTCACATaGGTCGTGACTCTTCGGGTC +
Preference number: 5 (lower is better)
Translates to: SVAGVCTDANSQVLSTNRTPRFT*VVTLRV
Trigger: GACCCGAAGAGTCACGACCAATGTGAAACGAGGGGT...CCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCTTGTGGTGCTCTGTATTCGCAAAGTCCCGGCCGTaGTCTCGGCCCACGCCCCAC +
Preference number: 5 (lower is better)
Translates to: MNFGGFLSHFVSLWCSVFAKSRP*SRPTPH
Trigger: GTGGGGCGTGGGCCGAGACAACGGCCGGGACTTTGC...GAATACAGAGCACCACAAGCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS TCA 90 bp GAAGCTCTTAGTTCTCCTGGGCTGGGAGGGCAAAATCTCACAGCCTaGAGACTCCTGTGGGTGGGGATCTTTAACCTCCAGCTTCTCGGA +
Preference number: 5 (lower is better)
Translates to: EALSSPGLGGQNLTA*RLLWVGIFNLQLLG
Trigger: TCCGAGAAGCTGGAGGTTAAAGATCCCCACCCACAGGAGTCTTCAGGCTGTGAGATTTTGCCCTCCCAGCCCAGGAGAACTAAGAGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS TCA 90 bp CTGTTTCTCATTCTCTGGGGTGGGCGATGGCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTGGAGATCTGCTGGGATGGAGACAGG +
Preference number: 5 (lower is better)
Translates to: LFLILWGGRWRYRTK*PFPRAVEICWDGDR
Trigger: CCTGTCTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACGCCATCGCCCACCCCAGAGAATGAGAAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000087256.12
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS TCA 90 bp CAAATCCTCATTCTCTGGGGTGGGCGATGGCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTGGAGATCTGCTGGGATGGAGACAGG +
Preference number: 5 (lower is better)
Translates to: QILILWGGRWRYRTK*PFPRAVEICWDGDR
Trigger: CCTGTCTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACGCCATCGCCCACCCCAGAGAATGAGGATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000162366.8
CDS GCA 90 bp ACGGAGATTGAGGGTATTTGGTGGTGTGGCTGGGCTGTTCCGGTTTaGAATGTCTGTGGATCCGCTGCTGGCCATAAACACTGCCAAGGT +
Preference number: 5 (lower is better)
Translates to: TEIEGIWWCGWAVPV*NVCGSAAGHKHCQG
Trigger: ACCTTGGCAGTGTTTATGGCCAGCAGCGGATCCACAGACATTGCAAACCGGAACAGCCCAGCCACACCACCAAATACCCTCAATCTCCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160103.8
ENSMUST00000160870.8
ENSMUST00000161879.8
ENSMUST00000162349.8
ENSMUST00000162366.8
ENSMUST00000162382.8
CDS CCA 90 bp GGGCTGGACGATACTGTGGCTACTTGGCCATCCTCTGGGCTGGATTaGGGTTTGTTTGGTTTCTGTGGCAGCAAGTCACCATTCCCAATG +
Preference number: 5 (lower is better)
Translates to: GLDDTVATWPSSGLD*GLFGFCGSKSPFPM
Trigger: CATTGGGAATGGTGACTTGCTGCCACAGAAACCAAACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 90 bp ACAGTCGGTTTTGGCTCCTGTTTTAGGGTGGTCTTTCTTGGTCTCTaGGCTGGACGATACTGTGGCTACTTGGCCATCCTCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: TVGFGSCFRVVFLGL*AGRYCGYLAILWAG
Trigger: TCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGCCAAAACCGACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 90 bp TGGATCCGATGGAGGGCACAGTCGGTTTTGGCTCCTGTTTTAGGGTaGTCTTTCTTGGTCTCTGGGCTGGACGATACTGTGGCTACTTGG +
Preference number: 5 (lower is better)
Translates to: WIRWRAQSVLAPVLG*SFLVSGLDDTVATW
Trigger: CCAAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCTCCATCGGATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGAGACTCATATTGGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCTTTGGCGTTTAACCAGCTTGATGTaGGCAGAGCCGTTTCCCAGC +
Preference number: 5 (lower is better)
Translates to: RDSYWSSPVRSCRPVLWRLTSLM*AEPFPS
Trigger: GCTGGGAAACGGCTCTGCCAACATCAAGCTGGTTAA...ACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp TTTCCAGGAGGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCCCATTTTTAACCAGCTaGATGTTGGCAGAGCCGTTT +
Preference number: 5 (lower is better)
Translates to: FPGGSGRCGCLAMSSPPCPFLTS*MLAEPF
Trigger: AAACGGCTCTGCCAACATCAAGCTGGTTAAAAATGG...GCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCCTCCTGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTCGATACTGTGGCTACTaGGCCATCCTCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCRYCGY*AILWAG
Trigger: TCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCG...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTTAGGGTGGTCTTTCTaGGTCTCTGGGCTGGACGAT +
Preference number: 5 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSLGWSF*VSGLDD
Trigger: ATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAA...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGGGGAGGCACTGTCTaGGGACAGCGTCGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: KIKSLETKHRQLSGRPGIGGGTV*GQRRPA
Trigger: AGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCC...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGGTCCCGGCAATGTCATaGACTCTCTTCCAGCCCGGC +
Preference number: 5 (lower is better)
Translates to: DKISGDKASATEWKARYRVPAMS*TLFQPG
Trigger: GCCGGGCTGGAAGAGAGTCAATGACATTGCCGGGAC...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTCGTGATCCTGGCTCTCATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCGTCCCGGCAATGTCATaGACTCTCTTCCAGCCCGGC +
Preference number: 5 (lower is better)
Translates to: VVILALMNFGGFLSHFVSVPAMS*TLFQPG
Trigger: GCCGGGCTGGAAGAGAGTCAATGACATTGCCGGGAC...GCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCATGAGAGCCAGGATCACGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GGAAGTGGCCGATGTGGCTGCCTGGCGATGTCTTCACCGCCTTGCAGTGCCAACATGCATAGCGTAGCGTaGCTCCTTCAAACTCTTTTA +
Preference number: 5 (lower is better)
Translates to: GSGRCGCLAMSSPPCSANMHSVA*LLQTLL
Trigger: TAAAAGAGTTTGAAGGAGCAACGCTACGCTATGCAT...GTTGGCACTGCAAGGCGGTGAAGACATCGCCAGGCAGCCACATCGGCCACTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTACGCACAGCAAAACACTaGGCTTCTGGGTCACTGTTG +
Preference number: 5 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLRTAKH*ASGSLL
Trigger: CAACAGTGACCCAGAAGCCAAGTGTTTTGCTGTGCG...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTCTGCAGGCCAGTGCTTaGGCGTTCTTCCGTTCAGCC +
Preference number: 5 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATLQASA*AFFRSA
Trigger: GGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCAG...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGGCTCCGTCTTTGGTGTaGGAAAATCTTGCAAAGGGA +
Preference number: 5 (lower is better)
Translates to: IPACCTRAVPLGHTASMLAPSLV*ENLAKG
Trigger: TCCCTTTGCAAGATTTTCCAACACCAAAGACGGAGC...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162366.8
CDS CCA 90 bp TACTGTGGCTACTTGGCCATCCTCTGGGCTGGATTGGGGTTTGTTTaGTTTCTGTGGCAGCAAGTCACCATTCCCAATGACTACTGGGGC +
Preference number: 5 (lower is better)
Translates to: YCGYLAILWAGLGFV*FLWQQVTIPNDYWG
Trigger: GCCCCAGTAGTCATTGGGAATGGTGACTTGCTGCCACAGAAACCAAACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTGGGGGCGTGCTGTTCTaGGCATCTGAGTGTTTGATC +
Preference number: 5 (lower is better)
Translates to: ISGDKASATEWKARYRLLGGVLF*ASECLI
Trigger: GATCAAACACTCAGATGCCAAGAACAGCACGCCCCC...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCCCCTGTTCTGCAGCCTaGCGGAGCTGGTTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: KIKSLETKHRQLSGRPGIPCSAA*RSWFSP
Trigger: TGGGGAGAACCAGCTCCGCAAGGCTGCAGAACAGGG...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTGGGCTGAGGTTCTTGTaGGGGTCCTGCTGCCCCTGT +
Preference number: 5 (lower is better)
Translates to: VCSEVLFTIFTRRRPSAAGLRFL*GSCCPC
Trigger: ACAGGGGCAGCAGGACCCCAACAAGAACCTCAGCCC...AGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCGCAGGGCTGAGGTTCTaGTTGGGGTCCTGCTGCCCC +
Preference number: 5 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIAGLRF*LGSCCP
Trigger: GGGGCAGCAGGACCCCAACAAGAACCTCAGCCCTGC...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCGGGCTGGATTGGGGTTaGTTTGGTTTCTGTGGCAGC +
Preference number: 5 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFGLDWG*FGFCGS
Trigger: GCTGCCACAGAAACCAAACAAACCCCAATCCAGCCC...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTGGGCTGGATTGGGGTTaGTTTGGTTTCTGTGGCAGC +
Preference number: 5 (lower is better)
Translates to: ISGDKASATEWKARYRLLGLDWG*FGFCGS
Trigger: GCTGCCACAGAAACCAAACAAACCCCAATCCAGCCC...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTATCCTCTGGGCTGGATaGGGGTTTGTTTGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSILWAG*GFVWFL
Trigger: CAGAAACCAAACAAACCCCAATCCAGCCCAGAGGAT...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTCGATACTGTGGCTACTaGGCCATCCTCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATRYCGY*AILWAG
Trigger: TCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCG...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCAGGGCACAGTCGGTTTaGGCTCCTGTTTTAGGGTGG +
Preference number: 5 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFRAQSV*APVLGW
Trigger: CCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCT...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTGGATTCCTCGTCACTaGGTGCCAGGTTCTGGATCC +
Preference number: 5 (lower is better)
Translates to: ISGDKASATEWKARYRLLWIPRH*VPGSGS
Trigger: GGATCCAGAACCTGGCACCAAGTGACGAGGAATCCA...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTGGATTCCTCGTCACTaGGTGCCAGGTTCTGGATCC +
Preference number: 5 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFWIPRH*VPGSGS
Trigger: GGATCCAGAACCTGGCACCAAGTGACGAGGAATCCA...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTGGGGGAGGCACTGTCTaGGGACAGCGTCGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGGGGTV*GQRRPA
Trigger: AGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCC...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAGTCCCGGCAATGTCATaGACTCTCTTCCAGCCCGGC +
Preference number: 5 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIVPAMS*TLFQPG
Trigger: GCCGGGCTGGAAGAGAGTCAATGACATTGCCGGGAC...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGGACAGGCCGTTCCCATaGAGTCGTCCCTGTTGGGAT +
Preference number: 5 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWDRPFP*SRPCWD
Trigger: ATCCCAACAGGGACGACTCAATGGGAACGGCCTGTC...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTACCCCTCGTTTCACATaGGTCGTGACTCTTCGGGTC +
Preference number: 5 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCTPRFT*VVTLRV
Trigger: GACCCGAAGAGTCACGACCAATGTGAAACGAGGGGT...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS TCA 90 bp ATTGACTCTCTTCCAGCCCGGCGGCAAATCGGGATCTGTCTGAAATaGGTGATCACTCCAGATATCTGTTTCATCTGGGGAGCTGGGGGA +
Preference number: 5 (lower is better)
Translates to: IDSLPARRQIGICLK*VITPDICFIWGAGG
Trigger: TCCCCCAGCTCCCCAGATGAAACAGATATCTGGAGTGATCACTCATTTCAGACAGATCCCGATTTGCCGCCGGGCTGGAAGAGAGTCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS TCA 90 bp ATTGACTCTCTTCCAGCCCGGCGGCAAATCGGGATCTGTCTGAAATaGGTGATCACTCCAGATATCTGCTGTTTCATCTGGGGAGCTGGG +
Preference number: 5 (lower is better)
Translates to: IDSLPARRQIGICLK*VITPDICCFIWGAG
Trigger: CCCAGCTCCCCAGATGAAACAGCAGATATCTGGAGTGATCACTCATTTCAGACAGATCCCGATTTGCCGCCGGGCTGGAAGAGAGTCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159512.8
ENSMUST00000160063.5
CDS GCA 90 bp GGTCTGTCTACAGGTAACATGCCCAGGTACTGCACGCGGAACTTCTaGACCAGCTCCGTCTTTGGTGTTGGAAAATCTACTTGCAAAGGG +
Preference number: 5 (lower is better)
Translates to: GLSTGNMPRYCTRNF*TSSVFGVGKSTCKG
Trigger: CCCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGTAGACAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGGCATTTAATAGTTCATaGTGGGAGGAACGGAGATTG +
Preference number: 5 (lower is better)
Translates to: IPACCTRAVPLGHTASMLAFNSS*WEERRL
Trigger: CAATCTCCGTTCCTCCCACAATGAACTATTAAATGC...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGGGGGGCGTGCTGTTCTaGGCATCTGAGTGTTTGATC +
Preference number: 5 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLGGVLF*ASECLI
Trigger: GATCAAACACTCAGATGCCAAGAACAGCACGCCCCC...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCCCTGTTCTGCAGCCTaGCGGAGCTGGTTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIPCSAA*RSWFSP
Trigger: TGGGGAGAACCAGCTCCGCAAGGCTGCAGAACAGGG...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACGGGCTGAGGTTCTTGTaGGGGTCCTGCTGCCCCTGT +
Preference number: 5 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINGLRFL*GSCCPC
Trigger: ACAGGGGCAGCAGGACCCCAACAAGAACCTCAGCCC...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AGTCCAGGCAGAGACGAAGGGCATGTGGCTCTGTGTATATTTTTGATGAAATCAGGGCTGAGGTTCTTGTaGGGGTCCTGCTGCCCCTGT +
Preference number: 5 (lower is better)
Translates to: SPGRDEGHVALCIFLMKSGLRFL*GSCCPC
Trigger: ACAGGGGCAGCAGGACCCCAACAAGAACCTCAGCCC...TGATTTCATCAAAAATATACACAGAGCCACATGCCCTTCGTCTCTGCCTGGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGAAACAGGTCCAATTATGGATTGGGGTTTGTTaGGTTTCTGTGGCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: TRAVPLGHTASMLKQVQLWIGVC*VSVAAS
Trigger: ACTTGCTGCCACAGAAACCAAACAAACCCCAATCCA...TAATTGGACCTGTTTCAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAAATCTTGCAAAGGGACATCCGATACTGTGGCTACTaGGCCATCCTCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: ELLHQLRLWCWKILQRDIRYCGY*AILWAG
Trigger: TCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCG...GATGTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTAGGGTGGTCTTTCTaGGTCTCTGGGCTGGACGAT +
Preference number: 5 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFLGWSF*VSGLDD
Trigger: ATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAA...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCCAACCTTTCCCCTGACACTTTTCAGGGACTAAACACAGATCCCTGCATGTTGAGGGCACAGTCGGTTTaGGCTCCTGTTTTAGGGTGG +
Preference number: 5 (lower is better)
Translates to: ANLSPDTFQGLNTDPCMLRAQSV*APVLGW
Trigger: CCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCT...CAACATGCAGGGATCTGTGTTTAGTCCCTGAAAAGTGTCAGGGGAAAGGTTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGGGGAGGCACTGTCTaGGGACAGCGTCGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSGGGTV*GQRRPA
Trigger: AGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCC...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACGGGGGAGGCACTGTCTaGGGACAGCGTCGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDGGGTV*GQRRPA
Trigger: AGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCC...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTGTCCCGGCAATGTCATaGACTCTCTTCCAGCCCGGC +
Preference number: 5 (lower is better)
Translates to: KIMLLFISHGGGKTRSHAVPAMS*TLFQPG
Trigger: GCCGGGCTGGAAGAGAGTCAATGACATTGCCGGGAC...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGTCCCGGCAATGTCATaGACTCTCTTCCAGCCCGGC +
Preference number: 5 (lower is better)
Translates to: FISHGGGKTRSHACLTLSVPAMS*TLFQPG
Trigger: GCCGGGCTGGAAGAGAGTCAATGACATTGCCGGGAC...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAGACAGGCCGTTCCCATaGAGTCGTCCCTGTTGGGAT +
Preference number: 5 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIDRPFP*SRPCWD
Trigger: ATCCCAACAGGGACGACTCAATGGGAACGGCCTGTC...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCCCTGCATGTTGTACAAGAGCCGTGCCACTGGGCCACACTGCCAGCATGCTGATGCATAGCGTAGCGTaGCTCCTTCAAACTCTTTTA +
Preference number: 5 (lower is better)
Translates to: IPACCTRAVPLGHTASMLMHSVA*LLQTLL
Trigger: TAAAAGAGTTTGAAGGAGCAACGCTACGCTATGCAT...CAGCATGCTGGCAGTGTGGCCCAGTGGCACGGCTCTTGTACAACATGCAGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTTGTGGCAATGGCTTTaGCTGGTGTGTCACATCGAA +
Preference number: 5 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSLWQWL*LVCHIE
Trigger: TTCGATGTGACACACCAGCAAAAGCCATTGCCACAA...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTAGATTTCGTGGAGACTaGTGGCAATGGCTTTTGCTG +
Preference number: 5 (lower is better)
Translates to: LARKGVAAFFCVCARKSCRFRGD*WQWLLL
Trigger: CAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCT...ACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CCGTTCGTCCAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTCGTTCAGCCATAATCTaGGAGCAGATTTCGTGGAGA +
Preference number: 5 (lower is better)
Translates to: PFVQGCSVSWLGRVWPHSRSAII*EQISWR
Trigger: TCTCCACGAAATCTGCTCCAAGATTATGGCTGAACG...AGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTGGACGAACGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCGCTCCGTCTTTGGTGTaGGAAAATCTACTTGCAAAG +
Preference number: 5 (lower is better)
Translates to: RWLVSVPTPTAKFCQPTGAPSLV*ENLLAK
Trigger: CTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGC...GCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp CTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACGCACCAGCTCCGTCTTaGGTGTTGGAAAATCTACTT +
Preference number: 5 (lower is better)
Translates to: LGRVWPHSSVCVLGSPVHAPAPS*VLENLL
Trigger: AAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGC...GTGAACAGGACTTCCGAGCACACACACAGAAGAATGCGGCCACACCCTTCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp TATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGGAAGGCCAGTCCTCCTaGCTGGATGACGTCATGAGA +
Preference number: 5 (lower is better)
Translates to: YITWWRQDEVTCLSNTVWEGQSS*LDDVMR
Trigger: TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTC...CCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACGAAGGCCAGTCCTCCTaGCTGGATGACGTCATGAGA +
Preference number: 5 (lower is better)
Translates to: APLYITWWRQDEVTCLSNEGQSS*LDDVMR
Trigger: TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTC...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTACCCCTCGTTTCACATaGGTCGTGACTCTTCGGGTC +
Preference number: 5 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATTPRFT*VVTLRV
Trigger: GACCCGAAGAGTCACGACCAATGTGAAACGAGGGGT...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTCCCTGTTCTGCAGCCTaGCGGAGCTGGTTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSPCSAA*RSWFSP
Trigger: TGGGGAGAACCAGCTCCGCAAGGCTGCAGAACAGGG...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCAGGGCTGAGGTTCTaGTTGGGGTCCTGCTGCCCC +
Preference number: 5 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMAGLRF*LGSCCP
Trigger: GGGGCAGCAGGACCCCAACAAGAACCTCAGCCCTGC...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCGCAGGGCTGAGGTTCTaGTTGGGGTCCTGCTGCCCC +
Preference number: 5 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGAGLRF*LGSCCP
Trigger: GGGGCAGCAGGACCCCAACAAGAACCTCAGCCCTGC...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AATCTTGGAGCAGATTTCGTGGAGACTTGTGGCAATGGCTTTTGCTGGTGTGTCGGGCTGGATTGGGGTTaGTTTGGTTTCTGTGGCAGC +
Preference number: 5 (lower is better)
Translates to: NLGADFVETCGNGFCWCVGLDWG*FGFCGS
Trigger: GCTGCCACAGAAACCAAACAAACCCCAATCCAGCCC...GACACACCAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCTGCTCCAAGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTATCCTCTGGGCTGGATaGGGGTTTGTTTGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: ISGDKASATEWKARYRLLILWAG*GFVWFL
Trigger: CAGAAACCAAACAAACCCCAATCCAGCCCAGAGGAT...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAAATCTTATCCTCTGGGCTGGATaGGGGTTTGTTTGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: GTARGTSAPAPSLVLENLILWAG*GFVWFL
Trigger: CAGAAACCAAACAAACCCCAATCCAGCCCAGAGGAT...AAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTCGATACTGTGGCTACTaGGCCATCCTCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: KIMLLFISHGGGKTRSHARYCGY*AILWAG
Trigger: TCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCG...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCCGATACTGTGGCTACTaGGCCATCCTCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: KIKSLETKHRQLSGRPGIRYCGY*AILWAG
Trigger: TCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCG...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAGGGCACAGTCGGTTTaGGCTCCTGTTTTAGGGTGG +
Preference number: 5 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIRAQSV*APVLGW
Trigger: CCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCT...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTGACAGGCCGTTCCCATaGAGTCGTCCCTGTTGGGAT +
Preference number: 5 (lower is better)
Translates to: KIMLLFISHGGGKTRSHADRPFP*SRPCWD
Trigger: ATCCCAACAGGGACGACTCAATGGGAACGGCCTGTC...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGAGACTCATATTGGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCTTTGGCGTGCTTCTGGGTCACTGTaGATACTACAAGAATCATCG +
Preference number: 5 (lower is better)
Translates to: RDSYWSSPVRSCRPVLWRASGSL*ILQESS
Trigger: CGATGATTCTTGTAGTATCAACAGTGACCCAGAAGC...ACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTCGCACAGCAAAACACTaGGCTTCTGGGTCACTGTTG +
Preference number: 5 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATRTAKH*ASGSLL
Trigger: CAACAGTGACCCAGAAGCCAAGTGTTTTGCTGTGCG...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CAAGGATGCAGTGTTAGTTGGCTAGGAAGGGTGTGGCCGCATTCTTCTGTGTGTGGCATTTCAGAATCCTaGTGTCCTTGTCTCTCGCCA +
Preference number: 5 (lower is better)
Translates to: QGCSVSWLGRVWPHSSVCGISES*CPCLSP
Trigger: TGGCGAGAGACAAGGACACAAGGATTCTGAAATGCC...ACACACAGAAGAATGCGGCCACACCCTTCCTAGCCAACTAACACTGCATCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCGGCATTTCAGAATCCTaGTGTCCTTGTCTCTCGCCA +
Preference number: 5 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFGISES*CPCLSP
Trigger: TGGCGAGAGACAAGGACACAAGGATTCTGAAATGCC...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGTTGTGGCAATGGCTTTaGCTGGTGTGTCACATCGAA +
Preference number: 5 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLLWQWL*LVCHIE
Trigger: TTCGATGTGACACACCAGCAAAAGCCATTGCCACAA...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACCTGCAGGCCAGTGCTTaGGCGTTCTTCCGTTCAGCC +
Preference number: 5 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINLQASA*AFFRSA
Trigger: GGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCAG...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAG +
Preference number: 5 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLTSRLI*VLSCKE
Trigger: CTCCTTACAGGAGAGGACCAATATGAGTCTCGATGT...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GAGAGCTCGGTGGCTGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCTGTTGGAAAATCTACTaGCAAAGGGACATCGAGACT +
Preference number: 5 (lower is better)
Translates to: ESSVAGVCTDANSQVLSTCWKIY*QRDIET
Trigger: AGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACA...GGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCAGCCACCGAGCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAGAAGGCCAGTCCTCCTaGCTGGATGACGTCATGAGA +
Preference number: 5 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIEGQSS*LDDVMR
Trigger: TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTC...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 90 bp CATGCCCAGGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTaGTGTTGGAAAATCTACTTGCAAAGGGACATCGAGACTCATATT +
Preference number: 5 (lower is better)
Translates to: HAQVLHAELLHQLRL*CWKIYLQRDIETHI
Trigger: AATATGAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCAGGGGGCGTGCTGTTCTaGGCATCTGAGTGTTTGATC +
Preference number: 5 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSGGVLF*ASECLI
Trigger: GATCAAACACTCAGATGCCAAGAACAGCACGCCCCC...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCCCCTGTTCTGCAGCCTaGCGGAGCTGGTTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGPCSAA*RSWFSP
Trigger: TGGGGAGAACCAGCTCCGCAAGGCTGCAGAACAGGG...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGGGCTGAGGTTCTTGTaGGGGTCCTGCTGCCCCTGT +
Preference number: 5 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMGLRFL*GSCCPC
Trigger: ACAGGGGCAGCAGGACCCCAACAAGAACCTCAGCCC...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTAGGGCACAGTCGGTTTaGGCTCCTGTTTTAGGGTGG +
Preference number: 5 (lower is better)
Translates to: KIMLLFISHGGGKTRSHARAQSV*APVLGW
Trigger: CCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCT...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACGGGGGAGGCACTGTCTaGGGACAGCGTCGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYGGGTV*GQRRPA
Trigger: AGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCC...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTAGATTTCGTGGAGACTaGTGGCAATGGCTTTTGCTG +
Preference number: 5 (lower is better)
Translates to: ISGDKASATEWKARYRLLRFRGD*WQWLLL
Trigger: CAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCT...AAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTCTGCAGGCCAGTGCTTaGGCGTTCTTCCGTTCAGCC +
Preference number: 5 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSLQASA*AFFRSA
Trigger: GGCTGAACGGAAGAACGCCAAAGCACTGGCCTGCAG...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAG +
Preference number: 5 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSTSRLI*VLSCKE
Trigger: CTCCTTACAGGAGAGGACCAATATGAGTCTCGATGT...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTGCACCAGCTCCGTCTTaGGTGTTGGAAAATCTACTT +
Preference number: 5 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCAPAPS*VLENLL
Trigger: AAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGC...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp AAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCGCACCAGCTCCGTCTTaGGTGTTGGAAAATCTACTT +
Preference number: 5 (lower is better)
Translates to: KSLETKHRQLSGRPGIGFAPAPS*VLENLL
Trigger: AAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGC...GAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCGAAGGCCAGTCCTCCTaGCTGGATGACGTCATGAGA +
Preference number: 5 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGEGQSS*LDDVMR
Trigger: TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTC...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTACCCCTCGTTTCACATaGGTCGTGACTCTTCGGGTC +
Preference number: 5 (lower is better)
Translates to: KIMLLFISHGGGKTRSHATPRFT*VVTLRV
Trigger: GACCCGAAGAGTCACGACCAATGTGAAACGAGGGGT...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 90 bp TTGGTGTTGGAAAATCTACTTGCAAAGGGACATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCTTTGGCGTTCT +
Preference number: 5 (lower is better)
Translates to: LVLENLLAKGHRDSY*SSPVRSCRPVLWRS
Trigger: AGAACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTTGGGAGGAACGGAGATaGAGGGTATTTGGTGGTGTG +
Preference number: 5 (lower is better)
Translates to: FISHGGGKTRSHACLTLSWEERR*RVFGGV
Trigger: CACACCACCAAATACCCTCAATCTCCGTTCCTCCCA...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGGGGGGCGTGCTGTTCTaGGCATCTGAGTGTTTGATC +
Preference number: 5 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMGGVLF*ASECLI
Trigger: GATCAAACACTCAGATGCCAAGAACAGCACGCCCCC...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTTTGGTGTTGGAAAATCTTGCAAAGGGACATCGAGACTCATATTGGTCCTCTCGGGGGCGTGCTGTTCTaGGCATCTGAGTGTTTGATC +
Preference number: 5 (lower is better)
Translates to: LWCWKILQRDIETHIGPLGGVLF*ASECLI
Trigger: GATCAAACACTCAGATGCCAAGAACAGCACGCCCCC...GAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGATTTTCCAACACCAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTCCATTTTTAACCAGCTaGATGTTGGCAGAGCCGTTT +
Preference number: 5 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSPFLTS*MLAEPF
Trigger: AAACGGCTCTGCCAACATCAAGCTGGTTAAAAATGG...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AGTTTTGAGATGTGGGTCGTGATCCTGGCTCTCATGAACTTTGGTGGCTTCCTAATCCTCTGGGCTGGATaGGGGTTTGTTTGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: SFEMWVVILALMNFGGFLILWAG*GFVWFL
Trigger: CAGAAACCAAACAAACCCCAATCCAGCCCAGAGGAT...TAGGAAGCCACCAAAGTTCATGAGAGCCAGGATCACGACCCACATCTCAAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTTTAGGGTGGTCTTTCTaGGTCTCTGGGCTGGACGAT +
Preference number: 5 (lower is better)
Translates to: FISHGGGKTRSHACLTLSLGWSF*VSGLDD
Trigger: ATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAA...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTGACAGGCCGTTCCCATaGAGTCGTCCCTGTTGGGAT +
Preference number: 5 (lower is better)
Translates to: RQDEVTCLSNTVWLKIKSDRPFP*SRPCWD
Trigger: ATCCCAACAGGGACGACTCAATGGGAACGGCCTGTC...AGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTTACTCAGGATCCGAAATCAGGGCAAAGTGCTGAGGGACCCCAAGTTGGCTTGATGCATAGCGTAGCGTaGCTCCTTCAAACTCTTTTA +
Preference number: 5 (lower is better)
Translates to: VTQDPKSGQSAEGPQVGLMHSVA*LLQTLL
Trigger: TAAAAGAGTTTGAAGGAGCAACGCTACGCTATGCAT...CAAGCCAACTTGGGGTCCCTCAGCACTTTGCCCTGATTTCGGATCCTGAGTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGCTTCTGGGTCACTGTaGATACTACAAGAATCATCG +
Preference number: 5 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSASGSL*ILQESS
Trigger: CGATGATTCTTGTAGTATCAACAGTGACCCAGAAGC...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTGCTTCTGGGTCACTGTaGATACTACAAGAATCATCG +
Preference number: 5 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCASGSL*ILQESS
Trigger: CGATGATTCTTGTAGTATCAACAGTGACCCAGAAGC...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCCGCACAGCAAAACACTaGGCTTCTGGGTCACTGTTG +
Preference number: 5 (lower is better)
Translates to: KIKSLETKHRQLSGRPGIRTAKH*ASGSLL
Trigger: CAACAGTGACCCAGAAGCCAAGTGTTTTGCTGTGCG...GATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTCGCACAGCAAAACACTaGGCTTCTGGGTCACTGTTG +
Preference number: 5 (lower is better)
Translates to: KIMLLFISHGGGKTRSHARTAKH*ASGSLL
Trigger: CAACAGTGACCCAGAAGCCAAGTGTTTTGCTGTGCG...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACAGATTTCGTGGAGACTaGTGGCAATGGCTTTTGCTG +
Preference number: 5 (lower is better)
Translates to: APLYITWWRQDEVTCLSNRFRGD*WQWLLL
Trigger: CAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCT...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCGTTCAGCCATAATCTaGGAGCAGATTTCGTGGAGA +
Preference number: 5 (lower is better)
Translates to: DKISGDKASATEWKARYRRSAII*EQISWR
Trigger: TCTCCACGAAATCTGCTCCAAGATTATGGCTGAACG...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGTAGCTACTGCACCAGCTCCGTCTTaGGTGTTGGAAAATCTACTT +
Preference number: 5 (lower is better)
Translates to: KHRQLSGRPGIGFFSVATAPAPS*VLENLL
Trigger: AAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGC...AGTAGCTACACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp CTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCTTCTTTAGTGCATTTAATAGTTCATaGTGGGAGGAACGGAGATTG +
Preference number: 5 (lower is better)
Translates to: LETKHRQLSGRPGIGFFSAFNSS*WEERRL
Trigger: CAATCTCCGTTCCTCCCACAATGAACTATTAAATGC...ACTAAAGAAGCCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCTTGTGGTGCTCTGTATTCTTAACCAGCTTGATGTaGGCAGAGCCGTTTCCCAGC +
Preference number: 5 (lower is better)
Translates to: MNFGGFLSHFVSLWCSVFLTSLM*AEPFPS
Trigger: GCTGGGAAACGGCTCTGCCAACATCAAGCTGGTTAA...GAATACAGAGCACCACAAGCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTTAACCAGCTTGATGTaGGCAGAGCCGTTTCCCAGC +
Preference number: 5 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMLTSLM*AEPFPS
Trigger: GCTGGGAAACGGCTCTGCCAACATCAAGCTGGTTAA...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTTTAACCAGCTTGATGTaGGCAGAGCCGTTTCCCAGC +
Preference number: 5 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGLTSLM*AEPFPS
Trigger: GCTGGGAAACGGCTCTGCCAACATCAAGCTGGTTAA...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACCCATTTTTAACCAGCTaGATGTTGGCAGAGCCGTTT +
Preference number: 5 (lower is better)
Translates to: APLYITWWRQDEVTCLSNPFLTS*MLAEPF
Trigger: AAACGGCTCTGCCAACATCAAGCTGGTTAAAAATGG...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGCCATTTTTAACCAGCTaGATGTTGGCAGAGCCGTTT +
Preference number: 5 (lower is better)
Translates to: DKISGDKASATEWKARYRPFLTS*MLAEPF
Trigger: AAACGGCTCTGCCAACATCAAGCTGGTTAAAAATGG...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATATGGATTGGGGTTTGTTaGGTTTCTGTGGCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIWIGVC*VSVAAS
Trigger: ACTTGCTGCCACAGAAACCAAACAAACCCCAATCCA...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCAATCCTCTGGGCTGGATaGGGGTTTGTTTGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSILWAG*GFVWFL
Trigger: CAGAAACCAAACAAACCCCAATCCAGCCCAGAGGAT...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTTTAGGGTGGTCTTTCTaGGTCTCTGGGCTGGACGAT +
Preference number: 5 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGLGWSF*VSGLDD
Trigger: ATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAA...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATCGGGCTTCTGGGTCACTGTaGATACTACAAGAATCATCG +
Preference number: 5 (lower is better)
Translates to: DKISGDKASATEWKARYRASGSL*ILQESS
Trigger: CGATGATTCTTGTAGTATCAACAGTGACCCAGAAGC...CCGATACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCAGGCATTTCAGAATCCTaGTGTCCTTGTCTCTCGCCA +
Preference number: 5 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSGISES*CPCLSP
Trigger: TGGCGAGAGACAAGGACACAAGGATTCTGAAATGCC...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TGGTGTCTGTACCGACGCCAACAGCCAAGTTTTGTCAACCAACAGGCTCAGTGTTGTTGGAAAATCTACTaGCAAAGGGACATCGAGACT +
Preference number: 5 (lower is better)
Translates to: WCLYRRQQPSFVNQQAQCCWKIY*QRDIET
Trigger: AGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACA...ACACTGAGCCTGTTGGTTGACAAAACTTGGCTGTTGGCGTCGGTACAGACACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAGGGGGCGTGCTGTTCTaGGCATCTGAGTGTTTGATC +
Preference number: 5 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVGGVLF*ASECLI
Trigger: GATCAAACACTCAGATGCCAAGAACAGCACGCCCCC...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGATTGGGGTTTGTTaGGTTTCTGTGGCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSWIGVC*VSVAAS
Trigger: ACTTGCTGCCACAGAAACCAAACAAACCCCAATCCA...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCATCCTCTGGGCTGGATaGGGGTTTGTTTGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: QRCHPIVTAIQWYLLLRIILWAG*GFVWFL
Trigger: CAGAAACCAAACAAACCCCAATCCAGCCCAGAGGAT...GATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACTTAGGGTGGTCTTTCTaGGTCTCTGGGCTGGACGAT +
Preference number: 5 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDLGWSF*VSGLDD
Trigger: ATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAA...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCAGGGCACAGTCGGTTTaGGCTCCTGTTTTAGGGTGG +
Preference number: 5 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGRAQSV*APVLGW
Trigger: CCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCT...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACGACAGGCCGTTCCCATaGAGTCGTCCCTGTTGGGAT +
Preference number: 5 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYDRPFP*SRPCWD
Trigger: ATCCCAACAGGGACGACTCAATGGGAACGGCCTGTC...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CAGGTAAAACATCAGCATCCTCTCACAGACAAATACAAACAGACTTCCATACATGACAGGCCGTTCCCATaGAGTCGTCCCTGTTGGGAT +
Preference number: 5 (lower is better)
Translates to: QVKHQHPLTDKYKQTSIHDRPFP*SRPCWD
Trigger: ATCCCAACAGGGACGACTCAATGGGAACGGCCTGTC...ATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGCTGATGTTTTACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGGAACTTCTGCACCAGCTCCGTCTTTGGTGTTGGAAAATCTTGCAAAGGGACAATGCATAGCGTAGCGTaGCTCCTTCAAACTCTTTTA +
Preference number: 5 (lower is better)
Translates to: RNFCTSSVFGVGKSCKGTMHSVA*LLQTLL
Trigger: TAAAAGAGTTTGAAGGAGCAACGCTACGCTATGCAT...TGTCCCTTTGCAAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160063.5
CDS-3UTR CAA 90 bp TGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAGCTTCTGGGTCACTGTaGATACTACAAGAATCATCG +
Preference number: 5 (lower is better)
Translates to: WWRQDEVTCLSNTVWLKIASGSL*ILQESS
Trigger: CGATGATTCTTGTAGTATCAACAGTGACCCAGAAGC...TATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGCGCACAGCAAAACACTaGGCTTCTGGGTCACTGTTG +
Preference number: 5 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKRTAKH*ASGSLL
Trigger: CAACAGTGACCCAGAAGCCAAGTGTTTTGCTGTGCG...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCGCACAGCAAAACACTaGGCTTCTGGGTCACTGTTG +
Preference number: 5 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDRTAKH*ASGSLL
Trigger: CAACAGTGACCCAGAAGCCAAGTGTTTTGCTGTGCG...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATTGTGGCAATGGCTTTaGCTGGTGTGTCACATCGAA +
Preference number: 5 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSLWQWL*LVCHIE
Trigger: TTCGATGTGACACACCAGCAAAAGCCATTGCCACAA...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTTGTGGCAATGGCTTTaGCTGGTGTGTCACATCGAA +
Preference number: 5 (lower is better)
Translates to: KIMLLFISHGGGKTRSHALWQWL*LVCHIE
Trigger: TTCGATGTGACACACCAGCAAAAGCCATTGCCACAA...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTAGATTTCGTGGAGACTaGTGGCAATGGCTTTTGCTG +
Preference number: 5 (lower is better)
Translates to: VCSEVLFTIFTRRRPSAARFRGD*WQWLLL
Trigger: CAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCT...AGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTCGTTCAGCCATAATCTaGGAGCAGATTTCGTGGAGA +
Preference number: 5 (lower is better)
Translates to: KIMLLFISHGGGKTRSHARSAII*EQISWR
Trigger: TCTCCACGAAATCTGCTCCAAGATTATGGCTGAACG...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCAACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAG +
Preference number: 5 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSTSRLI*VLSCKE
Trigger: CTCCTTACAGGAGAGGACCAATATGAGTCTCGATGT...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACTGTTGGAAAATCTACTaGCAAAGGGACATCGAGACT +
Preference number: 5 (lower is better)
Translates to: APLYITWWRQDEVTCLSNCWKIY*QRDIET
Trigger: AGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACA...GTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCGCACCAGCTCCGTCTTaGGTGTTGGAAAATCTACTT +
Preference number: 5 (lower is better)
Translates to: LVKDKISGDKASATEWKAAPAPS*VLENLL
Trigger: AAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGC...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCTGGGAGGAACGGAGATaGAGGGTATTTGGTGGTGTG +
Preference number: 5 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGWEERR*RVFGGV
Trigger: CACACCACCAAATACCCTCAATCTCCGTTCCTCCCA...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGGTTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCCCATTTTTAACCAGCTaGATGTTGGCAGAGCCGTTT +
Preference number: 5 (lower is better)
Translates to: LVKDKISGDKASATEWKAPFLTS*MLAEPF
Trigger: AAACGGCTCTGCCAACATCAAGCTGGTTAAAAATGG...GGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAACCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTGGATTGGGGTTTGTTaGGTTTCTGTGGCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: RKSCSQYLQEDDLLLLMMWIGVC*VSVAAS
Trigger: ACTTGCTGCCACAGAAACCAAACAAACCCCAATCCA...CATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCTTGTGGTGCTCTGTATTCTGGATTGGGGTTTGTTaGGTTTCTGTGGCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: MNFGGFLSHFVSLWCSVFWIGVC*VSVAAS
Trigger: ACTTGCTGCCACAGAAACCAAACAAACCCCAATCCA...GAATACAGAGCACCACAAGCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAATCCTCTGGGCTGGATaGGGGTTTGTTTGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSILWAG*GFVWFL
Trigger: CAGAAACCAAACAAACCCCAATCCAGCCCAGAGGAT...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTTTTCTTGGATTCCTCGTCACTaGGTGCCAGGTTCTGGATCC +
Preference number: 5 (lower is better)
Translates to: AAEIKIRDRDNGILNSFSWIPRH*VPGSGS
Trigger: GGATCCAGAACCTGGCACCAAGTGACGAGGAATCCA...AGAAAAACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATGAACTTTGGTGGCTTCCTAAGTCACTTCGTTAGCTTGTGGTGCTCTGTATTCAGATTTCGTGGAGACTaGTGGCAATGGCTTTTGCTG +
Preference number: 5 (lower is better)
Translates to: MNFGGFLSHFVSLWCSVFRFRGD*WQWLLL
Trigger: CAGCAAAAGCCATTGCCACAAGTCTCCACGAAATCT...GAATACAGAGCACCACAAGCTAACGAAGTGACTTAGGAAGCCACCAAAGTTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGCTCCGTCTTTGGTGTaGGAAAATCTACTTGCAAAG +
Preference number: 5 (lower is better)
Translates to: FISHGGGKTRSHACLTLSAPSLV*ENLLAK
Trigger: CTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGC...AGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp GCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGGCTCCGTCTTTGGTGTaGGAAAATCTACTTGCAAAG +
Preference number: 5 (lower is better)
Translates to: ARKSCSQYLQEDDLLLLMAPSLV*ENLLAK
Trigger: CTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGC...CATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp CCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGGATCCGAAATCAGGGCGCATTTAATAGTTCATaGTGGGAGGAACGGAGATTG +
Preference number: 5 (lower is better)
Translates to: PIVTAIQWYLLLRIRNQGAFNSS*WEERRL
Trigger: CAATCTCCGTTCCTCCCACAATGAACTATTAAATGC...GCCCTGATTTCGGATCCTGAGTAACAGATACCACTGAATTGCTGTAACAATGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCTGGAGACAAAGCATGGGGGCGTGCTGTTCTaGGCATCTGAGTGTTTGATC +
Preference number: 5 (lower is better)
Translates to: TCLSNTVWLKIKSLETKHGGVLF*ASECLI
Trigger: GATCAAACACTCAGATGCCAAGAACAGCACGCCCCC...ATGCTTTGTCTCCAGAGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACTTAACCAGCTTGATGTaGGCAGAGCCGTTTCCCAGC +
Preference number: 5 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYLTSLM*AEPFPS
Trigger: GCTGGGAAACGGCTCTGCCAACATCAAGCTGGTTAA...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACCCATTTTTAACCAGCTaGATGTTGGCAGAGCCGTTT +
Preference number: 5 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINPFLTS*MLAEPF
Trigger: AAACGGCTCTGCCAACATCAAGCTGGTTAAAAATGG...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAAGGGCTGGATTGGGGTTaGTTTGGTTTCTGTGGCAGC +
Preference number: 5 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKGLDWG*FGFCGS
Trigger: GCTGCCACAGAAACCAAACAAACCCCAATCCAGCCC...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCAATGCATAGCGTAGCGTaGCTCCTTCAAACTCTTTTA +
Preference number: 5 (lower is better)
Translates to: VLGSPVHNIYKKTTFCCSMHSVA*LLQTLL
Trigger: TAAAAGAGTTTGAAGGAGCAACGCTACGCTATGCAT...TGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AATGGAAGTGGGCCTAATGTCCCTTCGTGCAGTAAGACAGACAGACAAATAAACGCTTCTGGGTCACTGTaGATACTACAAGAATCATCG +
Preference number: 5 (lower is better)
Translates to: NGSGPNVPSCSKTDRQINASGSL*ILQESS
Trigger: CGATGATTCTTGTAGTATCAACAGTGACCCAGAAGC...GTTTATTTGTCTGTCTGTCTTACTGCACGAAGGGACATTAGGCCCACTTCCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp GCATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGGCATTTCAGAATCCTaGTGTCCTTGTCTCTCGCCA +
Preference number: 5 (lower is better)
Translates to: ASSHRQIQTDFHTYFLAMGISES*CPCLSP
Trigger: TGGCGAGAGACAAGGACACAAGGATTCTGAAATGCC...CATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CGGCAAGACGAGGTCACATGCTTGTCTAACACTGTCTGGTTAAAGATAAAATCTCGTTCAGCCATAATCTaGGAGCAGATTTCGTGGAGA +
Preference number: 5 (lower is better)
Translates to: RQDEVTCLSNTVWLKIKSRSAII*EQISWR
Trigger: TCTCCACGAAATCTGCTCCAAGATTATGGCTGAACG...AGATTTTATCTTTAACCAGACAGTGTTAGACAAGCATGTGACCTCGTCTTGCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTCGTTCAGCCATAATCTaGGAGCAGATTTCGTGGAGA +
Preference number: 5 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSRSAII*EQISWR
Trigger: TCTCCACGAAATCTGCTCCAAGATTATGGCTGAACG...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAG +
Preference number: 5 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSTSRLI*VLSCKE
Trigger: CTCCTTACAGGAGAGGACCAATATGAGTCTCGATGT...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAG +
Preference number: 5 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDTSRLI*VLSCKE
Trigger: CTCCTTACAGGAGAGGACCAATATGAGTCTCGATGT...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAAATCATGCTCCTCTTTATATCACATGGTGGCGGCAAGACGAGGTCACATGCTTGTTGGAAAATCTACTaGCAAAGGGACATCGAGACT +
Preference number: 5 (lower is better)
Translates to: KIMLLFISHGGGKTRSHACWKIY*QRDIET
Trigger: AGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACA...AGCATGTGACCTCGTCTTGCCGCCACCATGTGATATAAAGAGGAGCATGATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAAGAAGGCCAGTCCTCCTaGCTGGATGACGTCATGAGA +
Preference number: 5 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKEGQSS*LDDVMR
Trigger: TCTCATGACGTCATCCAGCAAGGAGGACTGGCCTTC...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp ATCCTCTCACAGACAAATACAAACAGACTTCCATACATACTTTTTGGCCATGGCGCACCAGCTCCGTCTTaGGTGTTGGAAAATCTTGCA +
Preference number: 5 (lower is better)
Translates to: ILSQTNTNRLPYILFGHGAPAPS*VLENLA
Trigger: TGCAAGATTTTCCAACACCAAAGACGGAGCTGGTGC...GCCATGGCCAAAAAGTATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAATGGGAGGAACGGAGATaGAGGGTATTTGGTGGTGTG +
Preference number: 5 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKWEERR*RVFGGV
Trigger: CACACCACCAAATACCCTCAATCTCCGTTCCTCCCA...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCACCATTTTTAACCAGCTaGATGTTGGCAGAGCCGTTT +
Preference number: 5 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSPFLTS*MLAEPF
Trigger: AAACGGCTCTGCCAACATCAAGCTGGTTAAAAATGG...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAATTAGGGTGGTCTTTCTaGGTCTCTGGGCTGGACGAT +
Preference number: 5 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKLGWSF*VSGLDD
Trigger: ATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAA...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTAAAGATAAAATCTCTGGAGACAAAGCATCGGCAACTGAGTGGAAGGCCAGGTATGCATAGCGTAGCGTaGCTCCTTCAAACTCTTTTA +
Preference number: 5 (lower is better)
Translates to: LKIKSLETKHRQLSGRPGMHSVA*LLQTLL
Trigger: TAAAAGAGTTTGAAGGAGCAACGCTACGCTATGCAT...ACCTGGCCTTCCACTCAGTTGCCGATGCTTTGTCTCCAGAGATTTTATCTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp AAACCCAAAGGTGTCACCCCATTGTTACAGCAATTCAGTGGTATCTGTTACTCAGCTTCTGGGTCACTGTaGATACTACAAGAATCATCG +
Preference number: 5 (lower is better)
Translates to: KPKGVTPLLQQFSGICYSASGSL*ILQESS
Trigger: CGATGATTCTTGTAGTATCAACAGTGACCCAGAAGC...TGAGTAACAGATACCACTGAATTGCTGTAACAATGGGGTGACACCTTTGGGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CAGGTAAAACATCAGCATCCTCTCACAGACAAATACAAACAGACTTCCATACATGGCATTTCAGAATCCTaGTGTCCTTGTCTCTCGCCA +
Preference number: 5 (lower is better)
Translates to: QVKHQHPLTDKYKQTSIHGISES*CPCLSP
Trigger: TGGCGAGAGACAAGGACACAAGGATTCTGAAATGCC...ATGTATGGAAGTCTGTTTGTATTTGTCTGTGAGAGGATGCTGATGTTTTACCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTCTTCTGTGTGTGTGCTCGGAAGTCCTGTTCACAATATTTACAAGAAGACGACGCATTTAATAGTTCATaGTGGGAGGAACGGAGATTG +
Preference number: 5 (lower is better)
Translates to: FFCVCARKSCSQYLQEDDAFNSS*WEERRL
Trigger: CAATCTCCGTTCCTCCCACAATGAACTATTAAATGC...GTCGTCTTCTTGTAAATATTGTGAACAGGACTTCCGAGCACACACACAGAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CCATCACCAAACCACCTTTCAGGCGATGGATATAGTTCACTGAGTTACTTTAAGGCATTTAATAGTTCATaGTGGGAGGAACGGAGATTG +
Preference number: 5 (lower is better)
Translates to: PSPNHLSGDGYSSLSYFKAFNSS*WEERRL
Trigger: CAATCTCCGTTCCTCCCACAATGAACTATTAAATGC...CTTAAAGTAACTCAGTGAACTATATCCATCGCCTGAAAGGTGGTTTGGTGATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACTGGATTGGGGTTTGTTaGGTTTCTGTGGCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYWIGVC*VSVAAS
Trigger: ACTTGCTGCCACAGAAACCAAACAAACCCCAATCCA...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAAGGCATTTCAGAATCCTaGTGTCCTTGTCTCTCGCCA +
Preference number: 5 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKGISES*CPCLSP
Trigger: TGGCGAGAGACAAGGACACAAGGATTCTGAAATGCC...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAG +
Preference number: 5 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYTSRLI*VLSCKE
Trigger: CTCCTTACAGGAGAGGACCAATATGAGTCTCGATGT...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp CATTCCGCTGCAGAGATCAAAATTAGAGACCGTGATAACGGGATTCTAAACAGTTGTTGGAAAATCTACTaGCAAAGGGACATCGAGACT +
Preference number: 5 (lower is better)
Translates to: HSAAEIKIRDRDNGILNSCWKIY*QRDIET
Trigger: AGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACA...ACTGTTTAGAATCCCGTTATCACGGTCTCTAATTTTGATCTCTGCAGCGGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
CDS-3UTR CAA 90 bp GAAGTCCTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAGCTCCGTCTTTGGTGTaGGAAAATCTACTTGCAAAG +
Preference number: 5 (lower is better)
Translates to: EVLFTIFTRRRPSAAHDVAPSLV*ENLLAK
Trigger: CTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGC...TACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAGGACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS-3UTR CAA 90 bp CTGTTCACAATATTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACATGCATAGCGTAGCGTaGCTCCTTCAAACTCTTTTA +
Preference number: 5 (lower is better)
Translates to: LFTIFTRRRPSAAHDVTYMHSVA*LLQTLL
Trigger: TAAAAGAGTTTGAAGGAGCAACGCTACGCTATGCAT...GTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAATATTGTGAACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS-3UTR CAA 90 bp TTTACAAGAAGACGACCTTCTGCTGCTCATGATGTAACTTACAGGAAAGAAAAAGCATTTAATAGTTCATaGTGGGAGGAACGGAGATTG +
Preference number: 5 (lower is better)
Translates to: FTRRRPSAAHDVTYRKEKAFNSS*WEERRL
Trigger: CAATCTCCGTTCCTCCCACAATGAACTATTAAATGC...TTTTTCTTTCCTGTAAGTTACATCATGAGCAGCAGAAGGTCGTCTTCTTGTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 72 bp CCTGGGCCAGGCTGGGCTTTCTCCTCTCCAACCCCTTaGCAGGGGCCCAGGTTCTGCCCTAGCTCTCTAGCC +
Preference number: 6 (lower is better)
Translates to: PGPGWAFSSPTP*QGPRFCPSSLA
Trigger: GGCTAGAGAGCTAGGGCAGAACCTGGGCCCCTGCCAAGGGGTTGGAGAGGAGAAAGCCCAGCCTGGCCCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 90 bp AGCTTCTCGGAGGTTAGGTTGATGACGGCTGCAGGGCTGAGGTTCTaGTTGGGGTCCTGCTGCCCCTGTTCTGCAGCCTTGCGGAGCTGG +
Preference number: 6 (lower is better)
Translates to: SFSEVRLMTAAGLRF*LGSCCPCSAALRSW
Trigger: CCAGCTCCGCAAGGCTGCAGAACAGGGGCAGCAGGACCCCAACAAGAACCTCAGCCCTGCAGCCGTCATCAACCTAACCTCCGAGAAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS GCA 72 bp TTCTCCTCTCCAACCCCTTGGCAGGGGCCCAGGTTCTaGCCTAGCTCTCTAGCCGAGGTTTCCAGGTCTGCA +
Preference number: 6 (lower is better)
Translates to: FSSPTPWQGPRF*PSSLAEVSRSA
Trigger: TGCAGACCTGGAAACCTCGGCTAGAGAGCTAGGGCAGAACCTGGGCCCCTGCCAAGGGGTTGGAGAGGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 72 bp TGGGGGAGGCACTGTCTTGGGACAGCGTCGTCCAGCTaGATTCCTCGTCACTTGGTGCCAGGTTCTGGATCC +
Preference number: 6 (lower is better)
Translates to: WGRHCLGTASSS*IPRHLVPGSGS
Trigger: GGATCCAGAACCTGGCACCAAGTGACGAGGAATCCAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 90 bp TTCTCGGAGGTTAGGTTGATGACGGCTGCAGGGCTGAGGTTCTTGTaGGGGTCCTGCTGCCCCTGTTCTGCAGCCTTGCGGAGCTGGTTC +
Preference number: 6 (lower is better)
Translates to: FSEVRLMTAAGLRFL*GSCCPCSAALRSWF
Trigger: GAACCAGCTCCGCAAGGCTGCAGAACAGGGGCAGCAGGACCCCAACAAGAACCTCAGCCCTGCAGCCGTCATCAACCTAACCTCCGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 72 bp GTTGGCAGAGCCGTTTCCCAGCAGGGGCTGTACAGCTaGATCCGAGAGGCCCATGGCCGCCTGAATATTAGT +
Preference number: 6 (lower is better)
Translates to: VGRAVSQQGLYS*IREAHGRLNIS
Trigger: ACTAATATTCAGGCGGCCATGGGCCTCTCGGATCCAGCTGTACAGCCCCTGCTGGGAAACGGCTCTGCCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000161879.8
ENSMUST00000162349.8
ENSMUST00000162366.8
ENSMUST00000162382.8
CDS CCA 72 bp GCTGTTTCATCTGGGGAGCTGGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTGGATTCCTCGTCACTT +
Preference number: 6 (lower is better)
Translates to: AVSSGELGEALS*DSVVQLDSSSL
Trigger: AAGTGACGAGGAATCCAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAACAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159512.8
ENSMUST00000160063.5
CDS CAA 90 bp AGGCACTGTCTTGGGACAGCGTCGTCCAGCTGGATTCCTCGTCACTaGGTGCCAGGTTCTGGATCCGATGGAGGGCACAGTCGGTTTTGG +
Preference number: 6 (lower is better)
Translates to: RHCLGTASSSWIPRH*VPGSGSDGGHSRFW
Trigger: CCAAAACCGACTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAGTGACGAGGAATCCAGCTGGACGACGCTGTCCCAAGACAGTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 90 bp CCAGATATCTGCTGTTTCATCTGGGGAGCTGGGGGAGGCACTGTCTaGGGACAGCGTCGTCCAGCTGGATTCCTCGTCACTTGGTGCCAG +
Preference number: 6 (lower is better)
Translates to: PDICCFIWGAGGGTV*GQRRPAGFLVTWCQ
Trigger: CTGGCACCAAGTGACGAGGAATCCAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAACAGCAGATATCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159512.8
ENSMUST00000160063.5
CDS CAA 90 bp TCCTGTGGGTGGGGATCTTTAACCTCCAGCTTCTCGGAGGTTAGGTaGATGACGGCTGCAGGGCTGAGGTTCTTGTTGGGGTCCTGCTGC +
Preference number: 6 (lower is better)
Translates to: SCGWGSLTSSFSEVR*MTAAGLRFLLGSCC
Trigger: GCAGCAGGACCCCAACAAGAACCTCAGCCCTGCAGCCGTCATCAACCTAACCTCCGAGAAGCTGGAGGTTAAAGATCCCCACCCACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 90 bp ACTCCAGATATCTGTTTCATCTGGGGAGCTGGGGGAGGCACTGTCTaGGGACAGCGTCGTCCAGCTGGATTCCTCGTCACTTGGTGCCAG +
Preference number: 6 (lower is better)
Translates to: TPDICFIWGAGGGTV*GQRRPAGFLVTWCQ
Trigger: CTGGCACCAAGTGACGAGGAATCCAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAACAGATATCTGGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 72 bp GTCCAGCTGGATTCCTCGTCACTTGGTGCCAGGTTCTaGATCCGATGGAGGGCACAGTCGGTTTTGGCTCCT +
Preference number: 6 (lower is better)
Translates to: VQLDSSSLGARF*IRWRAQSVLAP
Trigger: AGGAGCCAAAACCGACTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAGTGACGAGGAATCCAGCTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 72 bp TCTGTTTCATCTGGGGAGCTGGGGGAGGCACTGTCTTaGGACAGCGTCGTCCAGCTGGATTCCTCGTCACTT +
Preference number: 6 (lower is better)
Translates to: SVSSGELGEALS*DSVVQLDSSSL
Trigger: AAGTGACGAGGAATCCAGCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAACAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 72 bp GATCACTCCAGATATCTGCTGTTTCATCTGGGGAGCTaGGGGAGGCACTGTCTTGGGACAGCGTCGTCCAGC +
Preference number: 6 (lower is better)
Translates to: DHSRYLLFHLGS*GRHCLGTASSS
Trigger: GCTGGACGACGCTGTCCCAAGACAGTGCCTCCCCCAGCTCCCCAGATGAAACAGCAGATATCTGGAGTGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159512.8
ENSMUST00000160063.5
CDS CCA 72 bp GGTGGTCTTTCTTGGTCTCTGGGCTGGACGATACTGTaGCTACTTGGCCATCCTCTGGGCTGGATTGGGGTT +
Preference number: 6 (lower is better)
Translates to: GGLSWSLGWTIL*LLGHPLGWIGV
Trigger: AACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGAAAGACCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 90 bp TCACTTGGTGCCAGGTTCTGGATCCGATGGAGGGCACAGTCGGTTTaGGCTCCTGTTTTAGGGTGGTCTTTCTTGGTCTCTGGGCTGGAC +
Preference number: 6 (lower is better)
Translates to: SLGARFWIRWRAQSV*APVLGWSFLVSGLD
Trigger: GTCCAGCCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCTCCATCGGATCCAGAACCTGGCACCAAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS TCA 72 bp AGTTCTCCTGGGCTGGGAGGGCAAAATCTCACAGCCTaGAGACTCCTGTGGGTGGGGATCTTTAACCTCCAG +
Preference number: 6 (lower is better)
Translates to: SSPGLGGQNLTA*RLLWVGIFNLQ
Trigger: CTGGAGGTTAAAGATCCCCACCCACAGGAGTCTTCAGGCTGTGAGATTTTGCCCTCCCAGCCCAGGAGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS TCA 72 bp AGTGTAACACGGAGCGGTCCATGGGGTCCACCAGGCTaGGCATGTCGTTTTCCAGGCTCAGGTACATGTCTT +
Preference number: 6 (lower is better)
Translates to: SVTRSGPWGPPG*ACRFPGSGTCL
Trigger: AAGACATGTACCTGAGCCTGGAAAACGACATGCTCAGCCTGGTGGACCCCATGGACCGCTCCGTGTTACACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS GCA 72 bp GAGGGTATTTGGTGGTGTGGCTGGGCTGTTCCGGTTTaGAATGTCTGTGGATCCGCTGCTGGCCATAAACAC +
Preference number: 6 (lower is better)
Translates to: EGIWWCGWAVPV*NVCGSAAGHKH
Trigger: GTGTTTATGGCCAGCAGCGGATCCACAGACATTGCAAACCGGAACAGCCCAGCCACACCACCAAATACCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160103.8
ENSMUST00000160870.8
ENSMUST00000161879.8
ENSMUST00000162349.8
ENSMUST00000162366.8
ENSMUST00000162382.8
CDS CCA 72 bp GGCGTTACAGAACTAAGTGACCCTTTCCTAGAGCCGTaGAGATCTGCTGGGATGGAGACAGGCCGTTCCCAT +
Preference number: 6 (lower is better)
Translates to: GVTELSDPFLEP*RSAGMETGRSH
Trigger: ATGGGAACGGCCTGTCTCCATCCCAGCAGATCTCCACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 72 bp TGGGGATCTTTAACCTCCAGCTTCTCGGAGGTTAGGTaGATGACGGCTGCAGGGCTGAGGTTCTTGTTGGGG +
Preference number: 6 (lower is better)
Translates to: WGSLTSSFSEVR*MTAAGLRFLLG
Trigger: CCCCAACAAGAACCTCAGCCCTGCAGCCGTCATCAACCTAACCTCCGAGAAGCTGGAGGTTAAAGATCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 90 bp AGGGTGGTCTTTCTTGGTCTCTGGGCTGGACGATACTGTGGCTACTaGGCCATCCTCTGGGCTGGATTGGGGTTTGTTTGGTTTCTGTGG +
Preference number: 6 (lower is better)
Translates to: RVVFLGLWAGRYCGY*AILWAGLGFVWFLW
Trigger: CCACAGAAACCAAACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGAAAGACCACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 90 bp TGGAGGGCACAGTCGGTTTTGGCTCCTGTTTTAGGGTGGTCTTTCTaGGTCTCTGGGCTGGACGATACTGTGGCTACTTGGCCATCCTCT +
Preference number: 6 (lower is better)
Translates to: WRAQSVLAPVLGWSF*VSGLDDTVATWPSS
Trigger: AGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS TCA 72 bp ATTCTCTGGGGTGGGCGATGGCGTTACAGAACTAAGTaGCCCTTTCCTAGAGCCGTGGAGATCTGCTGGGAT +
Preference number: 6 (lower is better)
Translates to: ILWGGRWRYRTK*PFPRAVEICWD
Trigger: ATCCCAGCAGATCTCCACGGCTCTAGGAAAGGGTCACTTAGTTCTGTAACGCCATCGCCCACCCCAGAGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 72 bp GTGGCTACTTGGCCATCCTCTGGGCTGGATTGGGGTTaGTTTGGTTTCTGTGGCAGCAAGTCACCATTCCCA +
Preference number: 6 (lower is better)
Translates to: VATWPSSGLDWG*FGFCGSKSPFP
Trigger: TGGGAATGGTGACTTGCTGCCACAGAAACCAAACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 72 bp CGATACTGTGGCTACTTGGCCATCCTCTGGGCTGGATaGGGGTTTGTTTGGTTTCTGTGGCAGCAAGTCACC +
Preference number: 6 (lower is better)
Translates to: RYCGYLAILWAG*GFVWFLWQQVT
Trigger: GGTGACTTGCTGCCACAGAAACCAAACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 72 bp TTTCTTGGTCTCTGGGCTGGACGATACTGTGGCTACTaGGCCATCCTCTGGGCTGGATTGGGGTTTGTTTGG +
Preference number: 6 (lower is better)
Translates to: FLGLWAGRYCGY*AILWAGLGFVW
Trigger: CCAAACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 72 bp GCCAGGTTCTGGATCCGATGGAGGGCACAGTCGGTTTaGGCTCCTGTTTTAGGGTGGTCTTTCTTGGTCTCT +
Preference number: 6 (lower is better)
Translates to: ARFWIRWRAQSV*APVLGWSFLVS
Trigger: AGAGACCAAGAAAGACCACCCTAAAACAGGAGCCAAAACCGACTGTGCCCTCCATCGGATCCAGAACCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 90 bp TGGGCTGGACGATACTGTGGCTACTTGGCCATCCTCTGGGCTGGATaGGGGTTTGTTTGGTTTCTGTGGCAGCAAGTCACCATTCCCAAT +
Preference number: 6 (lower is better)
Translates to: WAGRYCGYLAILWAG*GFVWFLWQQVTIPN
Trigger: ATTGGGAATGGTGACTTGCTGCCACAGAAACCAAACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCGTCCAGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CCA 72 bp TTTGGCTCCTGTTTTAGGGTGGTCTTTCTTGGTCTCTaGGCTGGACGATACTGTGGCTACTTGGCCATCCTC +
Preference number: 6 (lower is better)
Translates to: FGSCFRVVFLGL*AGRYCGYLAIL
Trigger: GAGGATGGCCAAGTAGCCACAGTATCGTCCAGCCCAGAGACCAAGAAAGACCACCCTAAAACAGGAGCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS CAA 90 bp GACGATACTGTGGCTACTTGGCCATCCTCTGGGCTGGATTGGGGTTaGTTTGGTTTCTGTGGCAGCAAGTCACCATTCCCAATGACTACT +
Preference number: 6 (lower is better)
Translates to: DDTVATWPSSGLDWG*FGFCGSKSPFPMTT
Trigger: AGTAGTCATTGGGAATGGTGACTTGCTGCCACAGAAACCAAACAAACCCCAATCCAGCCCAGAGGATGGCCAAGTAGCCACAGTATCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS TCA 72 bp CTTCCAGCCCGGCGGCAAATCGGGATCTGTCTGAAATaGGTGATCACTCCAGATATCTGTTTCATCTGGGGA +
Preference number: 6 (lower is better)
Translates to: LPARRQIGICLK*VITPDICFIWG
Trigger: TCCCCAGATGAAACAGATATCTGGAGTGATCACTCATTTCAGACAGATCCCGATTTGCCGCCGGGCTGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
ENSMUST00000162366.8
CDS GCA 72 bp ACAGGTAACATGCCCAGGTACTGCACGCGGAACTTCTaGACCAGCTCCGTCTTTGGTGTTGGAAAATCTACT +
Preference number: 6 (lower is better)
Translates to: TGNMPRYCTRNF*TSSVFGVGKST
Trigger: AGTAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGTTACCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS CCA 72 bp TTCATTGTGGGAGGAACGGAGATTGAGGGTATTTGGTaGTGTGGCTGGGCTGTTCCGGTTTGCAATGTCTGT +
Preference number: 6 (lower is better)
Translates to: FIVGGTEIEGIW*CGWAVPVCNVC
Trigger: ACAGACATTGCAAACCGGAACAGCCCAGCCACACCACCAAATACCCTCAATCTCCGTTCCTCCCACAATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160103.8
ENSMUST00000160870.8
ENSMUST00000161879.8
ENSMUST00000162349.8
ENSMUST00000162366.8
ENSMUST00000162382.8
CDS CCA 72 bp GTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTTaGTGTTGGAAAATCTACTTGCAAAGGGACATCGAG +
Preference number: 6 (lower is better)
Translates to: VLHAELLHQLRL*CWKIYLQRDIE
Trigger: CTCGATGTCCCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS CAA 72 bp GCACGCGGAACTTCTGCACCAGCTCCGTCTTTGGTGTaGGAAAATCTACTTGCAAAGGGACATCGAGACTCA +
Preference number: 6 (lower is better)
Translates to: ARGTSAPAPSLV*ENLLAKGHRDS
Trigger: TGAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS CAA 72 bp GGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTaGGTGTTGGAAAATCTACTTGCAAAGGGACATCGA +
Preference number: 6 (lower is better)
Translates to: GTARGTSAPAPS*VLENLLAKGHR
Trigger: TCGATGTCCCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS CAA 90 bp ACATGCCCAGGTACTGCACGCGGAACTTCTGCACCAGCTCCGTCTTaGGTGTTGGAAAATCTACTTGCAAAGGGACATCGAGACTCATAT +
Preference number: 6 (lower is better)
Translates to: TCPGTARGTSAPAPS*VLENLLAKGHRDSY
Trigger: ATATGAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTGCAGTACCTGGGCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS CCA 72 bp CACGCGGAACTTCTGCACCAGCTCCGTCTTTGGTGTTaGAAAATCTACTTGCAAAGGGACATCGAGACTCAT +
Preference number: 6 (lower is better)
Translates to: HAELLHQLRLWC*KIYLQRDIETH
Trigger: ATGAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACACCAAAGACGGAGCTGGTGCAGAAGTTCCGCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS CAA 72 bp GGAAAATCTACTTGCAAAGGGACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCT +
Preference number: 6 (lower is better)
Translates to: GKSTCKGTSRLI*VLSCKELQASA
Trigger: AGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGTAGATTTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS CAA 90 bp TTTGGTGTTGGAAAATCTACTTGCAAAGGGACATCGAGACTCATATaGGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCTTTGGCGTTC +
Preference number: 6 (lower is better)
Translates to: FGVGKSTCKGTSRLI*VLSCKELQASALAF
Trigger: GAACGCCAAAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGTAGATTTTCCAACACCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS CCA 72 bp GAAAATCTACTTGCAAAGGGACATCGAGACTCATATTaGTCCTCTCCTGTAAGGAGCTGCAGGCCAGTGCTT +
Preference number: 6 (lower is better)
Translates to: ENLLAKGHRDSY*SSPVRSCRPVL
Trigger: AAGCACTGGCCTGCAGCTCCTTACAGGAGAGGACCAATATGAGTCTCGATGTCCCTTTGCAAGTAGATTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160870.8
ENSMUST00000162349.8
CDS CAA 90 bp TGTTTGATCTCTGCATTTAATAGTTCATTGTGGGAGGAACGGAGATaGAGGGTATTTGGTGGTGTGGCTGGGCTGTTCCGGTTTGCAATG +
Preference number: 6 (lower is better)
Translates to: CLISAFNSSLWEERR*RVFGGVAGLFRFAM
Trigger: CATTGCAAACCGGAACAGCCCAGCCACACCACCAAATACCCTCAATCTCCGTTCCTCCCACAATGAACTATTAAATGCAGAGATCAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160103.8
ENSMUST00000160870.8
ENSMUST00000161879.8
ENSMUST00000162349.8
ENSMUST00000162366.8
ENSMUST00000162382.8
CDS CAA 72 bp GCATCTGAGTGTTTGATCTCTGCATTTAATAGTTCATaGTGGGAGGAACGGAGATTGAGGGTATTTGGTGGT +
Preference number: 6 (lower is better)
Translates to: ASECLISAFNSS*WEERRLRVFGG
Trigger: ACCACCAAATACCCTCAATCTCCGTTCCTCCCACAATGAACTATTAAATGCAGAGATCAAACACTCAGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000087256.12
ENSMUST00000159512.8
ENSMUST00000159786.8
ENSMUST00000160063.5
ENSMUST00000160103.8
ENSMUST00000160870.8
ENSMUST00000161879.8
ENSMUST00000162349.8
ENSMUST00000162366.8
ENSMUST00000162382.8