Pregenerated sensors for APBA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004931Ensembl transcript IDs: ENSMUST00000057798.9, ENSMUST00000218297.2, ENSMUST00000218742.2, ENSMUST00000219304.2, ENSMUST00000219460.2, ENSMUST00000220297.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTCTCGCCTTCAGGGGCCTTGACGCGGTCCATGGCCTCCTGCGCCTaGCCCATGCGTGTGCTGGGCGCCGGGCTGCGCTCTGACAGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: VSPSGALTRSMASCA*PMRVLGAGLRSDSS Trigger: GCTGCTGTCAGAGCGCAGCCCGGCGCCCAGCACACGCATGGGGCAGGCGCAGGAGGCCATGGACCGCGTCAAGGCCCCTGAAGGCGAGAC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | CCCGAAGATGACACCATCCATGAGCTCCTCCGGCCCACAGGGACCTaGGACCTCGGTGACGGCAGGGCACGAGGCCAGGGTCTCCCGGCT | + |
|
Preference number: 5 (lower is better) Translates to: PEDDTIHELLRPTGT*DLGDGRARGQGLPA Trigger: AGCCGGGAGACCCTGGCCTCGTGCCCTGCCGTCACCGAGGTCCCAGGTCCCTGTGGGCCGGAGGAGCTCATGGATGGTGTCATCTTCGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS TCA 90 bp | GCAGAAGTGGTCCAGGTCGCCGTTGTGCGGGTGGCTGGCAGCGGTTaGGGGCTGCGTGCCCACCTGGCTGGGGTCGATCCTGTTCTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: AEVVQVAVVRVAGSG*GLRAHLAGVDPVLL Trigger: CAGGAGAACAGGATCGACCCCAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCCACCCGCACAACGGCGACCTGGACCACTTCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS GCA 90 bp | CCAGGTCGCCGTTGTGCGGGTGGCTGGCAGCGGTTGAGGGCTGCGTaGCCACCTGGCTGGGGTCGATCCTGTTCTCCTGTAGGAACTGGC | + |
|
Preference number: 5 (lower is better) Translates to: PGRRCAGGWQRLRAA*PPGWGRSCSPVGTG Trigger: GCCAGTTCCTACAGGAGAACAGGATCGACCCCAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCCACCCGCACAACGGCGACCTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | CGCACGTGGGGCCGGCGGATGACGGCCGTGGTGACCGGTGGGCAGTaGATAATACTCAGCGTCACGGATGAAAGTCGCCGCACCTCGCGC | + |
|
Preference number: 5 (lower is better) Translates to: RTWGRRMTAVVTGGQ*IILSVTDESRRTSR Trigger: GCGCGAGGTGCGGCGACTTTCATCCGTGACGCTGAGTATTATCCACTGCCCACCGGTCACCACGGCCGTCATCCGCCGGCCCCACGTGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | CCGCCTGCCTCGGCCGACAAGAGCCCACCAGCATCTGGGTTCTCCTaGGTGGCAAGTCCTTGGCCGGTAGCAATGTGCAGGGGACAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: PPASADKSPPASGFS*VASPWPVAMCRGQG Trigger: CCCCTGTCCCCTGCACATTGCTACCGGCCAAGGACTTGCCACCCAGGAGAACCCAGATGCTGGTGGGCTCTTGTCGGCCGAGGCAGGCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS GCA 90 bp | TCCCTACAGTTCTGGCTGTTGCAGAAGTGGTCCAGGTCGCCGTTGTaGGGGTGGCTGGCAGCGGTTGAGGGCTGCGTGCCCACCTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: SLQFWLLQKWSRSPL*GWLAAVEGCVPTWL Trigger: CAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCCACCCGCACAACGGCGACCTGGACCACTTCTGCAACAGCCAGAACTGTAGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | GTGACAGGGCCTCCAGGCCCTAAGGCCGACTGGGTGTTAGAGGGGTaGTTCTCAGAGGGCACCTCGGGGCCTTTGGGCTCCTCCAAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: VTGPPGPKADWVLEG*FSEGTSGPLGSSKS Trigger: GGACTTGGAGGAGCCCAAAGGCCCCGAGGTGCCCTCTGAGAACCACCCCTCTAACACCCAGTCGGCCTTAGGGCCTGGAGGCCCTGTCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | TGCCCCATGCGTGTGCTGGGCGCCGGGCTGCGCTCTGACAGCAGCTaGGTGGAGCCCAGGTATTTCGCCCCGAAGATGACACCATCCATG | + |
|
Preference number: 5 (lower is better) Translates to: CPMRVLGAGLRSDSS*VEPRYFAPKMTPSM Trigger: CATGGATGGTGTCATCTTCGGGGCGAAATACCTGGGCTCCACCCAGCTGCTGTCAGAGCGCAGCCCGGCGCCCAGCACACGCATGGGGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | TGTGCGGGTGGCTGGCAGCGGTTGAGGGCTGCGTGCCCACCTGGCTaGGGTCGATCCTGTTCTCCTGTAGGAACTGGCTGTAGGCGATGC | + |
|
Preference number: 5 (lower is better) Translates to: CAGGWQRLRAACPPG*GRSCSPVGTGCRRC Trigger: GCATCGCCTACAGCCAGTTCCTACAGGAGAACAGGATCGACCCCAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCCACCCGCACA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS TCA 90 bp | GGACTCCACCACGCTCAGCAGCGCCCCCACGCAGCAGGCTACAAATaGTTCCATCCTCCACACAGAAGCCCAGCTGCTCGCGCACGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: GLHHAQQRPHAAGYK*FHPPHRSPAARARG Trigger: CCCACGTGCGCGAGCAGCTGGGCTTCTGTGTGGAGGATGGAATCATTTGTAGCCTGCTGCGTGGGGGCGCTGCTGAGCGTGGTGGAGTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000218297.2 ENSMUST00000220297.2 |
||
| CDS GCA 90 bp | CCCATCAGGGTCCTCTGGCGGCTGCAGAAGGCGGGGTGCAGTCTGTaGAGGATCTTGGGGGACAGATTGGGCAGGCGAAGAGGCCTCATC | + |
|
Preference number: 5 (lower is better) Translates to: PIRVLWRLQKAGCSL*RILGDRLGRRRGLI Trigger: GATGAGGCCTCTTCGCCTGCCCAATCTGTCCCCCAAGATCCTGCACAGACTGCACCCCGCCTTCTGCAGCCGCCAGAGGACCCTGATGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | AAGGTCGTCCCCGCCTGCCTCGGCCGACAAGAGCCCACCAGCATCTaGGTTCTCCTGGGTGGCAAGTCCTTGGCCGGTAGCAATGTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: KVVPACLGRQEPTSI*VLLGGKSLAGSNVQ Trigger: CTGCACATTGCTACCGGCCAAGGACTTGCCACCCAGGAGAACCCAGATGCTGGTGGGCTCTTGTCGGCCGAGGCAGGCGGGGACGACCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | GCATCTTGTAGAGTCGCCGCTGGCGGTCCTGGGGAGTTGTCCTCCTaGCCAGCCGCCTCCGGGCCATCAAGACCAGTACAGGCCCAATGT | + |
|
Preference number: 5 (lower is better) Translates to: ASCRVAAGGPGELSS*PAASGPSRPVQAQC Trigger: ACATTGGGCCTGTACTGGTCTTGATGGCCCGGAGGCGGCTGGCCAGGAGGACAACTCCCCAGGACCGCCAGCGGCGACTCTACAAGATGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS GCA 90 bp | CACCTGGCCGCTTCTGGATGCAAACCTCCCTACAGTTCTGGCTGTTaGAGAAGTGGTCCAGGTCGCCGTTGTGCGGGTGGCTGGCAGCGG | + |
|
Preference number: 5 (lower is better) Translates to: HLAASGCKPPYSSGC*RSGPGRRCAGGWQR Trigger: CCGCTGCCAGCCACCCGCACAACGGCGACCTGGACCACTTCTGCAACAGCCAGAACTGTAGGGAGGTTTGCATCCAGAAGCGGCCAGGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | GCAGGGGACAGGGGGCTCCATCTGGGAATGGGCCACCCAGGTCGCTaGGTAGAGCTTCTAGCTGCTGAACCAGCTCCTGCACACTGGATG | + |
|
Preference number: 5 (lower is better) Translates to: AGDRGLHLGMGHPGR*VELLAAEPAPAHWM Trigger: CATCCAGTGTGCAGGAGCTGGTTCAGCAGCTAGAAGCTCTACCCAGCGACCTGGGTGGCCCATTCCCAGATGGAGCCCCCTGTCCCCTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | TCCTCTGGCGGCTGCAGAAGGCGGGGTGCAGTCTGTGCAGGATCTTaGGGGACAGATTGGGCAGGCGAAGAGGCCTCATCCCTCAGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: SSGGCRRRGAVCAGS*GTDWAGEEASSLSR Trigger: TCTGCTGAGGGATGAGGCCTCTTCGCCTGCCCAATCTGTCCCCCAAGATCCTGCACAGACTGCACCCCGCCTTCTGCAGCCGCCAGAGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | GACAAGAGCCCACCAGCATCTGGGTTCTCCTGGGTGGCAAGTCCTTaGCCGGTAGCAATGTGCAGGGGACAGGGGGCTCCATCTGGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: DKSPPASGFSWVASP*PVAMCRGQGAPSGN Trigger: ATTCCCAGATGGAGCCCCCTGTCCCCTGCACATTGCTACCGGCCAAGGACTTGCCACCCAGGAGAACCCAGATGCTGGTGGGCTCTTGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS TCA 90 bp | TCTGGGAATGGGCCACCCAGGTCGCTGGGTAGAGCTTCTAGCTGCTaGACCAGCTCCTGCACACTGGATGTGTCCAGCTCCATCTCACTC | + |
|
Preference number: 5 (lower is better) Translates to: SGNGPPRSLGRASSC*TSSCTLDVSSSISL Trigger: GAGTGAGATGGAGCTGGACACATCCAGTGTGCAGGAGCTGGTTCAGCAGCTAGAAGCTCTACCCAGCGACCTGGGTGGCCCATTCCCAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | GGGCCATCAAGACCAGTACAGGCCCAATGTCTGCGATGTAGGAGATaGTCTGCAGGGCATGGTCCATCAGGGCATCCTGGGAGTCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: GPSRPVQAQCLRCRR*SAGHGPSGHPGSQQ Trigger: CTGCTGACTCCCAGGATGCCCTGATGGACCATGCCCTGCAGACCATCTCCTACATCGCAGACATTGGGCCTGTACTGGTCTTGATGGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 90 bp | GCTGGCATGGTCTTGATGTGGATTTCTCTTGTCTCTGTGAGCAGCTaGATGATGCGCGCATGGGGCATAGCCACCACGCTCTGCCCGTTG | + |
|
Preference number: 5 (lower is better) Translates to: AGMVLMWISLVSVSS*MMRAWGIATTLCPL Trigger: CAACGGGCAGAGCGTGGTGGCTATGCCCCATGCGCGCATCATCCAGCTGCTCACAGAGACAAGAGAAATCCACATCAAGACCATGCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | CGCGGTCCATGGCCTCCTGCGCCTGCCCCATGCGTGTaGTGGGCGCCGGGCTGCGCTCTGACAGCAGCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: RGPWPPAPAPCV*WAPGCALTAAG Trigger: CCCAGCTGCTGTCAGAGCGCAGCCCGGCGCCCAGCACACGCATGGGGCAGGCGCAGGAGGCCATGGACCGCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CAA 72 bp | GGTCCAGGTCGCCGTTGTGCGGGTGGCTGGCAGCGGTaGAGGGCTGCGTGCCCACCTGGCTGGGGTCGATCC | + |
|
Preference number: 6 (lower is better) Translates to: GPGRRCAGGWQR*RAACPPGWGRS Trigger: GGATCGACCCCAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCCACCCGCACAACGGCGACCTGGACC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS TCA 72 bp | GTCCAGGTCGCCGTTGTGCGGGTGGCTGGCAGCGGTTaGGGGCTGCGTGCCCACCTGGCTGGGGTCGATCCT | + |
|
Preference number: 6 (lower is better) Translates to: VQVAVVRVAGSG*GLRAHLAGVDP Trigger: AGGATCGACCCCAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCCACCCGCACAACGGCGACCTGGAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | GACACCATCCATGAGCTCCTCCGGCCCACAGGGACCTaGGACCTCGGTGACGGCAGGGCACGAGGCCAGGGT | + |
|
Preference number: 6 (lower is better) Translates to: DTIHELLRPTGT*DLGDGRARGQG Trigger: ACCCTGGCCTCGTGCCCTGCCGTCACCGAGGTCCCAGGTCCCTGTGGGCCGGAGGAGCTCATGGATGGTGTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | CCCGCCTGCCTCGGCCGACAAGAGCCCACCAGCATCTaGGTTCTCCTGGGTGGCAAGTCCTTGGCCGGTAGC | + |
|
Preference number: 6 (lower is better) Translates to: PACLGRQEPTSI*VLLGGKSLAGS Trigger: GCTACCGGCCAAGGACTTGCCACCCAGGAGAACCCAGATGCTGGTGGGCTCTTGTCGGCCGAGGCAGGCGGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | CCCTTCCATCCATCCCGGGTCCCCATCAGGGTCCTCTaGCGGCTGCAGAAGGCGGGGTGCAGTCTGTGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: PFHPSRVPIRVL*RLQKAGCSLCR Trigger: CCTGCACAGACTGCACCCCGCCTTCTGCAGCCGCCAGAGGACCCTGATGGGGACCCGGGATGGATGGAAGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | GTGACGGCAGGGCACGAGGCCAGGGTCTCCCGGCTCTaGGTACCCACAGGTGGTTCCTGCTGTGTCACCAGG | + |
|
Preference number: 6 (lower is better) Translates to: VTAGHEARVSRL*VPTGGSCCVTR Trigger: CCTGGTGACACAGCAGGAACCACCTGTGGGTACCCAGAGCCGGGAGACCCTGGCCTCGTGCCCTGCCGTCAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | CCAGGGGTGCTGTCTCCAGCCAGGGCTCCGGGGAACTaGTGGAGCTCCTGCTGTCTGCTGGCTCTGCTGATG | + |
|
Preference number: 6 (lower is better) Translates to: PGVLSPARAPGN*WSSCCLLALLM Trigger: CATCAGCAGAGCCAGCAGACAGCAGGAGCTCCAGCAGTTCCCCGGAGCCCTGGCTGGAGACAGCACCCCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | CGTTGTGCGGGTGGCTGGCAGCGGTTGAGGGCTGCGTaGCCACCTGGCTGGGGTCGATCCTGTTCTCCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: RCAGGWQRLRAA*PPGWGRSCSPV Trigger: TACAGGAGAACAGGATCGACCCCAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCCACCCGCACAACG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | TTCTGGCTGTTGCAGAAGTGGTCCAGGTCGCCGTTGTaGGGGTGGCTGGCAGCGGTTGAGGGCTGCGTGCCC | + |
|
Preference number: 6 (lower is better) Translates to: FWLLQKWSRSPL*GWLAAVEGCVP Trigger: GGGCACGCAGCCCTCAACCGCTGCCAGCCACCCGCACAACGGCGACCTGGACCACTTCTGCAACAGCCAGAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | CCTCCAGGCCCTAAGGCCGACTGGGTGTTAGAGGGGTaGTTCTCAGAGGGCACCTCGGGGCCTTTGGGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: PPGPKADWVLEG*FSEGTSGPLGS Trigger: GGAGCCCAAAGGCCCCGAGGTGCCCTCTGAGAACCACCCCTCTAACACCCAGTCGGCCTTAGGGCCTGGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | CGAGGCCAGGGTCTCCCGGCTCTGGGTACCCACAGGTaGTTCCTGCTGTGTCACCAGGGGTGCTGTCTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: RGQGLPALGTHR*FLLCHQGCCLQ Trigger: CTGGAGACAGCACCCCTGGTGACACAGCAGGAACCACCTGTGGGTACCCAGAGCCGGGAGACCCTGGCCTCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | CGTGTGCTGGGCGCCGGGCTGCGCTCTGACAGCAGCTaGGTGGAGCCCAGGTATTTCGCCCCGAAGATGACA | + |
|
Preference number: 6 (lower is better) Translates to: RVLGAGLRSDSS*VEPRYFAPKMT Trigger: TGTCATCTTCGGGGCGAAATACCTGGGCTCCACCCAGCTGCTGTCAGAGCGCAGCCCGGCGCCCAGCACACG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | GGGTGGCTGGCAGCGGTTGAGGGCTGCGTGCCCACCTaGCTGGGGTCGATCCTGTTCTCCTGTAGGAACTGG | + |
|
Preference number: 6 (lower is better) Translates to: GWLAAVEGCVPT*LGSILFSCRNW Trigger: CCAGTTCCTACAGGAGAACAGGATCGACCCCAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCCACCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CAA 72 bp | GCATCTTGTAGAGTCGCCGCTGGCGGTCCTGGGGAGTaGTCCTCCTGGCCAGCCGCCTCCGGGCCATCAAGA | + |
|
Preference number: 6 (lower is better) Translates to: ASCRVAAGGPGE*SSWPAASGPSR Trigger: TCTTGATGGCCCGGAGGCGGCTGGCCAGGAGGACAACTCCCCAGGACCGCCAGCGGCGACTCTACAAGATGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | CTCATCCCTCAGCAGACCCAGAAGGTCGTCCCCGCCTaGCTCGGCCGACAAGAGCCCACCAGCATCTGGGTT | + |
|
Preference number: 6 (lower is better) Translates to: LIPQQTQKVVPA*LGRQEPTSIWV Trigger: AACCCAGATGCTGGTGGGCTCTTGTCGGCCGAGGCAGGCGGGGACGACCTTCTGGGTCTGCTGAGGGATGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | CTCAGGGTGACAGGGCCTCCAGGCCCTAAGGCCGACTaGGTGTTAGAGGGGTGGTTCTCAGAGGGCACCTCG | + |
|
Preference number: 6 (lower is better) Translates to: LRVTGPPGPKAD*VLEGWFSEGTS Trigger: CGAGGTGCCCTCTGAGAACCACCCCTCTAACACCCAGTCGGCCTTAGGGCCTGGAGGCCCTGTCACCCTGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | GGCTGGCAGCGGTTGAGGGCTGCGTGCCCACCTGGCTaGGGTCGATCCTGTTCTCCTGTAGGAACTGGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: GWQRLRAACPPG*GRSCSPVGTGC Trigger: ACAGCCAGTTCCTACAGGAGAACAGGATCGACCCCAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | GGCCGGCGGATGACGGCCGTGGTGACCGGTGGGCAGTaGATAATACTCAGCGTCACGGATGAAAGTCGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: GRRMTAVVTGGQ*IILSVTDESRR Trigger: GCGGCGACTTTCATCCGTGACGCTGAGTATTATCCACTGCCCACCGGTCACCACGGCCGTCATCCGCCGGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CAA 72 bp | CCCACCAGCATCTGGGTTCTCCTGGGTGGCAAGTCCTaGGCCGGTAGCAATGTGCAGGGGACAGGGGGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: PTSIWVLLGGKS*AGSNVQGTGGS Trigger: GGAGCCCCCTGTCCCCTGCACATTGCTACCGGCCAAGGACTTGCCACCCAGGAGAACCCAGATGCTGGTGGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CAA 90 bp | GTCCTCTGGCGGCTGCAGAAGGCGGGGTGCAGTCTGTGCAGGATCTaGGGGGACAGATTGGGCAGGCGAAGAGGCCTCATCCCTCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: VLWRLQKAGCSLCRI*GDRLGRRRGLIPQQ Trigger: CTGCTGAGGGATGAGGCCTCTTCGCCTGCCCAATCTGTCCCCCAAGATCCTGCACAGACTGCACCCCGCCTTCTGCAGCCGCCAGAGGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CAA 90 bp | CATGGCACAGCATCTTGTAGAGTCGCCGCTGGCGGTCCTGGGGAGTaGTCCTCCTGGCCAGCCGCCTCCGGGCCATCAAGACCAGTACAG | + |
|
Preference number: 6 (lower is better) Translates to: HGTASCRVAAGGPGE*SSWPAASGPSRPVQ Trigger: CTGTACTGGTCTTGATGGCCCGGAGGCGGCTGGCCAGGAGGACAACTCCCCAGGACCGCCAGCGGCGACTCTACAAGATGCTGTGCCATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | GTCCTCTGGCGGCTGCAGAAGGCGGGGTGCAGTCTGTaGAGGATCTTGGGGGACAGATTGGGCAGGCGAAGA | + |
|
Preference number: 6 (lower is better) Translates to: VLWRLQKAGCSL*RILGDRLGRRR Trigger: TCTTCGCCTGCCCAATCTGTCCCCCAAGATCCTGCACAGACTGCACCCCGCCTTCTGCAGCCGCCAGAGGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | CCACCAGCATCTGGGTTCTCCTGGGTGGCAAGTCCTTaGCCGGTAGCAATGTGCAGGGGACAGGGGGCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: PPASGFSWVASP*PVAMCRGQGAP Trigger: TGGAGCCCCCTGTCCCCTGCACATTGCTACCGGCCAAGGACTTGCCACCCAGGAGAACCCAGATGCTGGTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | CGGGGTGCAGTCTGTGCAGGATCTTGGGGGACAGATTaGGCAGGCGAAGAGGCCTCATCCCTCAGCAGACCC | + |
|
Preference number: 6 (lower is better) Translates to: RGAVCAGSWGTD*AGEEASSLSRP Trigger: GGGTCTGCTGAGGGATGAGGCCTCTTCGCCTGCCCAATCTGTCCCCCAAGATCCTGCACAGACTGCACCCCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | GGCTGCAGAAGGCGGGGTGCAGTCTGTGCAGGATCTTaGGGGACAGATTGGGCAGGCGAAGAGGCCTCATCC | + |
|
Preference number: 6 (lower is better) Translates to: GCRRRGAVCAGS*GTDWAGEEASS Trigger: GGATGAGGCCTCTTCGCCTGCCCAATCTGTCCCCCAAGATCCTGCACAGACTGCACCCCGCCTTCTGCAGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CAA 72 bp | CGGCTGCAGAAGGCGGGGTGCAGTCTGTGCAGGATCTaGGGGGACAGATTGGGCAGGCGAAGAGGCCTCATC | + |
|
Preference number: 6 (lower is better) Translates to: RLQKAGCSLCRI*GDRLGRRRGLI Trigger: GATGAGGCCTCTTCGCCTGCCCAATCTGTCCCCCAAGATCCTGCACAGACTGCACCCCGCCTTCTGCAGCCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||
| CDS CAA 90 bp | CGACAAGAGCCCACCAGCATCTGGGTTCTCCTGGGTGGCAAGTCCTaGGCCGGTAGCAATGTGCAGGGGACAGGGGGCTCCATCTGGGAA | + |
|
Preference number: 6 (lower is better) Translates to: RQEPTSIWVLLGGKS*AGSNVQGTGGSIWE Trigger: TTCCCAGATGGAGCCCCCTGTCCCCTGCACATTGCTACCGGCCAAGGACTTGCCACCCAGGAGAACCCAGATGCTGGTGGGCTCTTGTCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CAA 90 bp | TCACCTGGCCGCTTCTGGATGCAAACCTCCCTACAGTTCTGGCTGTaGCAGAAGTGGTCCAGGTCGCCGTTGTGCGGGTGGCTGGCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: SPGRFWMQTSLQFWL*QKWSRSPLCGWLAA Trigger: CGCTGCCAGCCACCCGCACAACGGCGACCTGGACCACTTCTGCAACAGCCAGAACTGTAGGGAGGTTTGCATCCAGAAGCGGCCAGGTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS TCA 72 bp | GCACACTGGATGTGTCCAGCTCCATCTCACTCAGGGTaGCAGGGCCTCCAGGCCCTAAGGCCGACTGGGTGT | + |
|
Preference number: 6 (lower is better) Translates to: AHWMCPAPSHSG*QGLQALRPTGC Trigger: ACACCCAGTCGGCCTTAGGGCCTGGAGGCCCTGTCACCCTGAGTGAGATGGAGCTGGACACATCCAGTGTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS TCA 72 bp | CACGCTCAGCAGCGCCCCCACGCAGCAGGCTACAAATaGTTCCATCCTCCACACAGAAGCCCAGCTGCTCGC | + |
|
Preference number: 6 (lower is better) Translates to: HAQQRPHAAGYK*FHPPHRSPAAR Trigger: GCGAGCAGCTGGGCTTCTGTGTGGAGGATGGAATCATTTGTAGCCTGCTGCGTGGGGGCGCTGCTGAGCGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000218297.2 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | TTCTCCTGGGTGGCAAGTCCTTGGCCGGTAGCAATGTaGAGGGGACAGGGGGCTCCATCTGGGAATGGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: FSWVASPWPVAM*RGQGAPSGNGP Trigger: TGGCCCATTCCCAGATGGAGCCCCCTGTCCCCTGCACATTGCTACCGGCCAAGGACTTGCCACCCAGGAGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | AGGGGGCTCCATCTGGGAATGGGCCACCCAGGTCGCTaGGTAGAGCTTCTAGCTGCTGAACCAGCTCCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: RGLHLGMGHPGR*VELLAAEPAPA Trigger: TGCAGGAGCTGGTTCAGCAGCTAGAAGCTCTACCCAGCGACCTGGGTGGCCCATTCCCAGATGGAGCCCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | TCGGCCGACAAGAGCCCACCAGCATCTGGGTTCTCCTaGGTGGCAAGTCCTTGGCCGGTAGCAATGTGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: SADKSPPASGFS*VASPWPVAMCR Trigger: CCTGCACATTGCTACCGGCCAAGGACTTGCCACCCAGGAGAACCCAGATGCTGGTGGGCTCTTGTCGGCCGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057798.9 ENSMUST00000218742.2 ENSMUST00000219304.2 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | GCGCGACGCCCAGGCCTTCACCTGGCCGCTTCTGGATaGAAACCTCCCTACAGTTCTGGCTGTTGCAGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: ARRPGLHLAASG*KPPYSSGCCRS Trigger: ACTTCTGCAACAGCCAGAACTGTAGGGAGGTTTGCATCCAGAAGCGGCCAGGTGAAGGCCTGGGCGTCGCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | ATGCAAACCTCCCTACAGTTCTGGCTGTTGCAGAAGTaGTCCAGGTCGCCGTTGTGCGGGTGGCTGGCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: MQTSLQFWLLQK*SRSPLCGWLAA Trigger: CGCTGCCAGCCACCCGCACAACGGCGACCTGGACCACTTCTGCAACAGCCAGAACTGTAGGGAGGTTTGCAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | ACTAGCGCGACGCCCAGGCCTTCACCTGGCCGCTTCTaGATGCAAACCTCCCTACAGTTCTGGCTGTTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: TSATPRPSPGRF*MQTSLQFWLLQ Trigger: CTGCAACAGCCAGAACTGTAGGGAGGTTTGCATCCAGAAGCGGCCAGGTGAAGGCCTGGGCGTCGCGCTAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | GCTTCTGGATGCAAACCTCCCTACAGTTCTGGCTGTTaGAGAAGTGGTCCAGGTCGCCGTTGTGCGGGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: ASGCKPPYSSGC*RSGPGRRCAGG Trigger: GCCACCCGCACAACGGCGACCTGGACCACTTCTGCAACAGCCAGAACTGTAGGGAGGTTTGCATCCAGAAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000219460.2 ENSMUST00000220297.2 |
||
| CDS CCA 72 bp | TCTCTTGTCTCTGTGAGCAGCTGGATGATGCGCGCATaGGGCATAGCCACCACGCTCTGCCCGTTGACCTCA | + |
|
Preference number: 6 (lower is better) Translates to: SLVSVSSWMMRA*GIATTLCPLTS Trigger: TGAGGTCAACGGGCAGAGCGTGGTGGCTATGCCCCATGCGCGCATCATCCAGCTGCTCACAGAGACAAGAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057798.9 ENSMUST00000218297.2 ENSMUST00000220297.2 |
||
| CDS GCA 72 bp | CCTCCGGGCCATCAAGACCAGTACAGGCCCAATGTCTaGGATGTAGGAGATGGTCTGGGAGTCAGCAGCCAA | + |
|
Preference number: 6 (lower is better) Translates to: PPGHQDQYRPNV*DVGDGLGVSSQ Trigger: TTGGCTGCTGACTCCCAGACCATCTCCTACATCGCAGACATTGGGCCTGTACTGGTCTTGATGGCCCGGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219460.2 |
||
| CDS CCA 72 bp | GAGATGGTCTGCAGGGCATGGTCCATCAGGGCATCCTaGGAGTCAGCAGCCAACACTTTGACACGCTTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: EMVCRAWSIRAS*ESAANTLTRLV Trigger: CACCAAGCGTGTCAAAGTGTTGGCTGCTGACTCCCAGGATGCCCTGATGGACCATGCCCTGCAGACCATCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057798.9 ENSMUST00000220297.2 |
||