RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APBA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030519

Ensembl transcript IDs: ENSMUST00000032732.15, ENSMUST00000205604.2, ENSMUST00000205613.2, ENSMUST00000206246.2, ENSMUST00000206630.2

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTaGGGTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGC +
Preference number: 1 (lower is better)
Translates to: VTRTHPSFEGARGPG*GGCKGVRGSGLCPG
Trigger: GCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
3UTR CCA 90 bp CTTACAATCAATCACACGTTCCCACACTTGGCACAAGTCTCAGCCTaGAAGCCAGGTTGCCCCTGTGCCTGTGCAGAGGAGGCAAGGCCA +
Preference number: 1 (lower is better)
Translates to: LTINHTFPHLAQVSA*KPGCPCACAEEARP
Trigger: TGGCCTTGCCTCCTCTGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGGGAACGTGTGATTGATTGTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR CCA 90 bp CCCTTGCTGCGTAAATACTTACAATCAATCACACGTTCCCACACTTaGCACAAGTCTCAGCCTGGAAGCCAGGTTGCCCCTGTGCCTGTG +
Preference number: 1 (lower is better)
Translates to: PLLRKYLQSITRSHT*HKSQPGSQVAPVPV
Trigger: CACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGGGAACGTGTGATTGATTGTAAGTATTTACGCAGCAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR CCA 90 bp CACAGAACTACCTGTGAGCACCCTTCATCAGCCGTGATGAGAATGTaGCAGAAGACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCT +
Preference number: 1 (lower is better)
Translates to: HRTTCEHPSSAVMRM*QKTGKFHKGLPCNS
Trigger: AGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGAAGGGTGCTCACAGGTAGTTCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR-3UTR CCA 90 bp GGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGCCAGGTGGGTCTGCCTaGTATCCCGGCTCCACGGTG +
Preference number: 2 (lower is better)
Translates to: GCKGVRGSGLCPGFWLVRPGGSA*YPGSTV
Trigger: CACCGTGGAGCCGGGATACCAGGCAGACCCACCTGG...CCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
3UTR-3UTR CCA 90 bp CCACACTTGGCACAAGTCTCAGCCTGGAAGCCAGGTTGCCCCTGTGCCTGTGCAGCCGTGATGAGAATGTaGCAGAAGACTGGTAAGTTT +
Preference number: 2 (lower is better)
Translates to: PHLAQVSAWKPGCPCACAAVMRM*QKTGKF
Trigger: AAACTTACCAGTCTTCTGCCACATTCTCATCACGGC...TGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR CAA 90 bp GCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATaGCCCTGCAACTCTCCTTCAGTAAGGACATACCTATTTTTCCCC +
Preference number: 2 (lower is better)
Translates to: AVMRMWQKTGKFHKG*PCNSPSVRTYLFFP
Trigger: GGGGAAAAATAGGTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR CCA 72 bp TGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTaGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCC +
Preference number: 3 (lower is better)
Translates to: WLQGGQGVRALS*LLARPDPGGSA
Trigger: GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
3UTR CCA 72 bp AAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTaGCTCGTCCGGACCCAGGTGGGTCTGCCTGGTATC +
Preference number: 3 (lower is better)
Translates to: KGVRGSGLCPGF*LVRTQVGLPGI
Trigger: GATACCAGGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
3UTR CCA 72 bp AATCACACGTTCCCACACTTGGCACAAGTCTCAGCCTaGAAGCCAGGTTGCCCCTGTGCCTGTGCAGAGGAG +
Preference number: 3 (lower is better)
Translates to: NHTFPHLAQVSA*KPGCPCACAEE
Trigger: CTCCTCTGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGGGAACGTGTGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR-3UTR CAA 90 bp GCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGCCCTGCAGCCAGAGGTCCTGGTaGGGGTGGCTGCAAGGGGGT +
Preference number: 3 (lower is better)
Translates to: AVMRMWQKTGKFHKGLPCSQRSW*GWLQGG
Trigger: ACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCT...GCAGGGCAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR CCA 72 bp ACCTGTGAGCACCCTTCATCAGCCGTGATGAGAATGTaGCAGAAGACTGGTAAGTTTCACAAAGGATTGCCC +
Preference number: 3 (lower is better)
Translates to: TCEHPSSAVMRM*QKTGKFHKGLP
Trigger: GGGCAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGAAGGGTGCTCACAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR CCA 72 bp CGTAAATACTTACAATCAATCACACGTTCCCACACTTaGCACAAGTCTCAGCCTGGAAGCCAGGTTGCCCCT +
Preference number: 3 (lower is better)
Translates to: RKYLQSITRSHT*HKSQPGSQVAP
Trigger: AGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGGGAACGTGTGATTGATTGTAAGTATTTACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp GCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAATGCTCAGCTTCCCTaGGCGAGCCGCTGGGCCGCC +
Preference number: 4 (lower is better)
Translates to: ARGSGGQGFVLASGSSGPNAQLP*ASRWAA
Trigger: GGCGGCCCAGCGGCTCGCTCAGGGAAGCTGAGCATT...GGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp GGTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCGCAGTCCTGAGAGGCTaGCCTGGGCATGCGGCGCCT +
Preference number: 4 (lower is better)
Translates to: GGCKGVRGSGLCPGFWLVAVLRG*PGHAAP
Trigger: AGGCGCCGCATGCCCAGGTCAGCCTCTCAGGACTGC...GACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp CTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACAATGCTCAGCTTCCCTaGGCGAGCCGCTGGGCCGCC +
Preference number: 4 (lower is better)
Translates to: LQGGQGVRALSWLLARPDNAQLP*ASRWAA
Trigger: GGCGGCCCAGCGGCTCGCTCAGGGAAGCTGAGCATT...GTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCTCCAGCTCCGGCATGTaGTCAGGGCTGGCCTCGCTG +
Preference number: 4 (lower is better)
Translates to: GVRALSWLLARPDPGGSASSSGM*SGLASL
Trigger: CAGCGAGGCCAGCCCTGAGCACATGCCGGAGCTGGA...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp GGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTTCCTCCACCGCCTCCTaGCACTCATCGGTGTCCACG +
Preference number: 4 (lower is better)
Translates to: GGQGVRALSWLLARPDPGSSTAS*HSSVST
Trigger: CGTGGACACCGATGAGTGTCAGGAGGCGGTGGAGGA...ACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGATCCAGCTCCGGCATGTaGTCAGGGCTGGCCTCGCTG +
Preference number: 4 (lower is better)
Translates to: AARGSGGQGFVLASGSSGSSSGM*SGLASL
Trigger: CAGCGAGGCCAGCCCTGAGCACATGCCGGAGCTGGA...TCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGGCCACGCTGAAGGCCTaGCCAATGGACTGGGCGATC +
Preference number: 4 (lower is better)
Translates to: GQGVRALSWLLARPDPGGATLKA*PMDWAI
Trigger: GATCGCCCAGTCCATTGGGCAGGCCTTCAGCGTGGC...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGCCTGGCCTGGCCCTGTaGTCCAGCATGCTGCTTGCA +
Preference number: 4 (lower is better)
Translates to: GQGVRALSWLLARPDPGGPGLAL*SSMLLA
Trigger: TGCAAGCAGCATGCTGGACCACAGGGCCAGGCCAGG...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCTGGCCACGCTGAAGGCCTaGCCAATGGACTGGGCGATC +
Preference number: 4 (lower is better)
Translates to: GQGFVLASGSSGPRWVCLATLKA*PMDWAI
Trigger: GATCGCCCAGTCCATTGGGCAGGCCTTCAGCGTGGC...CAGGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCCTGGCCTGGCCCTGTaGTCCAGCATGCTGCTTGCA +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTPGLAL*SSMLLA
Trigger: TGCAAGCAGCATGCTGGACCACAGGGCCAGGCCAGG...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGCATGGCCAGTGTCACTaGGTGGACAGGCCTCAGTGG +
Preference number: 4 (lower is better)
Translates to: GSGGQGFVLASGSSGPRWHGQCH*VDRPQW
Trigger: CCACTGAGGCCTGTCCACCCAGTGACACTGGCCATG...CCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTCTCTTGGGGCCACTTTaGCCTCTCCTCTGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: GGQGVRALSWLLARPDPGLLGPL*PLLWGP
Trigger: AGGACCCCAGAGGAGAGGCCAAAGTGGCCCCAAGAG...ACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCCTGGGCCCCAGGCGTaGTCTCAATGCAGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTPGPQA*SQCSPE
Trigger: CTCAGGACTGCATTGAGACCACGCCTGGGGCCCAGG...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACTCGCCAGGATCACAGTaGGCAGGATGGAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: LQGGQGVRALSWLLARPDSPGSQ*AGWSPS
Trigger: GCTGGGGCTCCATCCTGCCCACTGTGATCCTGGCGA...GTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCTCGCCAGGATCACAGTaGGCAGGATGGAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTSPGSQ*AGWSPS
Trigger: GCTGGGGCTCCATCCTGCCCACTGTGATCCTGGCGA...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCCCCTTGATGATGCCCTaGCACGTAGCCAGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: VAARGSGGQGFVLASGSSPLMMP*HVARGS
Trigger: GCTGCCCCTGGCTACGTGCCAGGGCATCATCAAGGG...GGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTACAGCGGGGTCTCCTaGCCCGTGAGGAGCCTAAAC +
Preference number: 4 (lower is better)
Translates to: GQGVRALSWLLARPDPGGYSGVS*PVRSLN
Trigger: GTTTAGGCTCCTCACGGGCCAGGAGACCCCGCTGTA...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR TCA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCTGTCAGTGGGCCCATTaGGATCAGAGCGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: GVRALSWLLARPDPGGSACQWAH*DQSAAA
Trigger: AGCAGCAGCGCTCTGATCTCAATGGGCCCACTGACA...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp ACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCGCAGTCCTGAGAGGCTaGCCTGGGCATGCGGCGCCT +
Preference number: 4 (lower is better)
Translates to: TRTHPSFEGARGPGWGGCAVLRG*PGHAAP
Trigger: AGGCGCCGCATGCCCAGGTCAGCCTCTCAGGACTGC...GCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp CCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAGGGGGTCAGGAGGCTGACCTGGGCATaGGGCGCCTGGCCATCAGAA +
Preference number: 4 (lower is better)
Translates to: PSFEGARGPGWGGCKGVRRLTWA*GAWPSE
Trigger: TTCTGATGGCCAGGCGCCGCATGCCCAGGTCAGCCT...CCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGGCCAGTGTCACTGGGTaGACAGGCCTCAGTGGAATC +
Preference number: 4 (lower is better)
Translates to: GCKGVRGSGLCPGFWLVRASVTG*TGLSGI
Trigger: GATTCCACTGAGGCCTGTCCACCCAGTGACACTGGC...CCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCTGTGGGCATGCGGCGCCTaGCCATCAGAACCACGATGT +
Preference number: 4 (lower is better)
Translates to: GQGFVLASGSSGPRWVCLWACGA*PSEPRC
Trigger: ACATCGTGGTTCTGATGGCCAGGCGCCGCATGCCCA...CAGGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CCACACTTGGCACAAGTCTCAGCCTGGAAGCCAGGTTGCCCCTGTGCCTGTGCACCTGAGAGGCTGACCTaGGCATGCGGCGCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: PHLAQVSAWKPGCPCACAPERLT*ACGAWP
Trigger: TGGCCAGGCGCCGCATGCCCAGGTCAGCCTCTCAGG...TGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCCCTGAGAGGCTGACCTaGGCATGCGGCGCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGPERLT*ACGAWP
Trigger: TGGCCAGGCGCCGCATGCCCAGGTCAGCCTCTCAGG...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACTGCTTCTTTCCCTCCTaGGCCCCAGGCGTGGTCTCA +
Preference number: 4 (lower is better)
Translates to: LQGGQGVRALSWLLARPDCFFPS*APGVVS
Trigger: TGAGACCACGCCTGGGGCCCAGGAGGGAAAGAAGCA...GTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR CAA 72 bp CCCACACTTGGCACAAGTCTCAGCCTGGAAGCCAGGTaGCCCCTGTGCCTGTGCAGAGGAGGCAAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: PTLGTSLSLEAR*PLCLCRGGKAS
Trigger: GCTGGCCTTGCCTCCTCTGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp GGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTCTGCTGACGGCTTCTTaGGCCTGCATCATTCGGATG +
Preference number: 4 (lower is better)
Translates to: GGQGVRALSWLLARPDPGLLTAS*ACIIRM
Trigger: CATCCGAATGATGCAGGCTCAAGAAGCCGTCAGCAG...ACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCTGTTTTTGGAGGGGTTaGGCTCAGAGAGCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: ARGSGGQGFVLASGSSGPCFWRG*AQRAAG
Trigger: CCCAGCTGCTCTCTGAGCGCAACCCCTCCAAAAACA...GGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCTCTGGGATAGGCAGGTaGCCATCTGGGTACTCCTGG +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTSGIGR*PSGYSW
Trigger: CCAGGAGTACCCAGATGGCCACCTGCCTATCCCAGA...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGCTTTGGCCTCTCCTCTaGGGTCCTGGTCTTGGTCTT +
Preference number: 4 (lower is better)
Translates to: GQGVRALSWLLARPDPGGLWPLL*GPGLGL
Trigger: AAGACCAAGACCAGGACCCCAGAGGAGAGGCCAAAG...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACTGCCTCACAGGGCCCTaGAACAGCCACAAAGCTTGG +
Preference number: 4 (lower is better)
Translates to: LQGGQGVRALSWLLARPDCLTGP*NSHKAW
Trigger: CCAAGCTTTGTGGCTGTTCCAGGGCCCTGTGAGGCA...GTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGACGCTGAAACCCAGCTaGTACTTGAGGTCTGGACGC +
Preference number: 4 (lower is better)
Translates to: GSGGQGFVLASGSSGPRWTLKPS*YLRSGR
Trigger: GCGTCCAGACCTCAAGTACCAGCTGGGTTTCAGCGT...CCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCACGCTGAAACCCAGCTaGTACTTGAGGTCTGGACGC +
Preference number: 4 (lower is better)
Translates to: GVRALSWLLARPDPGGSATLKPS*YLRSGR
Trigger: GCGTCCAGACCTCAAGTACCAGCTGGGTTTCAGCGT...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR TCA 90 bp GCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACTGCTGACGGCTTCTTaGGCCTGCATCATTCGGATG +
Preference number: 4 (lower is better)
Translates to: AARGSGGQGFVLASGSSGLLTAS*ACIIRM
Trigger: CATCCGAATGATGCAGGCTCAAGAAGCCGTCAGCAG...TCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp CCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAGGGGGTCAGGGTCTCAATGCAGTCCTaGGAGGCTGACCTGGGCATG +
Preference number: 4 (lower is better)
Translates to: PSFEGARGPGWGGCKGVRVSMQS*EADLGM
Trigger: CATGCCCAGGTCAGCCTCTCAGGACTGCATTGAGAC...CCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GGTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCTGTGGTCCAGCATGCTaGTTGCAGTGCTCTGACGCT +
Preference number: 4 (lower is better)
Translates to: GGCKGVRGSGLCPGFWLVCGPAC*LQCSDA
Trigger: AGCGTCAGAGCACTGCAAGCAGCATGCTGGACCACA...GACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCTCGATGTCTTCCTCCTaGTCCTCTAGGTCCCCATCC +
Preference number: 4 (lower is better)
Translates to: VAARGSGGQGFVLASGSSSMSSS*SSRSPS
Trigger: GGATGGGGACCTAGAGGAGCAGGAGGAAGACATCGA...GGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GGTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCATCGATGAGGTCTTCTaGCTCACAGGGCCCTGGAAC +
Preference number: 4 (lower is better)
Translates to: GGCKGVRGSGLCPGFWLVIDEVF*LTGPWN
Trigger: GTTCCAGGGCCCTGTGAGGCAGAAGACCTCATCGAT...GACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGATCGATGAGGTCTTCTaGCTCACAGGGCCCTGGAAC +
Preference number: 4 (lower is better)
Translates to: WLQGGQGVRALSWLLARPIDEVF*LTGPWN
Trigger: GTTCCAGGGCCCTGTGAGGCAGAAGACCTCATCGAT...CGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGATCAGGACTATGGTTGTaGCACTCCTGTTCCTCGGGC +
Preference number: 4 (lower is better)
Translates to: AARGSGGQGFVLASGSSGSGLWL*HSCSSG
Trigger: GCCCGAGGAACAGGAGTGCCACAACCATAGTCCTGA...TCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCTGGCCATCTTCTTCCTaGTCATGGACCTCCAGGACA +
Preference number: 4 (lower is better)
Translates to: GVRALSWLLARPDPGGSAWPSSS*SWTSRT
Trigger: TGTCCTGGAGGTCCATGACCAGGAAGAAGATGGCCA...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGGTCTTGAGTCCTCTCTaGAGGTCTCCAGGGTGCTTA +
Preference number: 4 (lower is better)
Translates to: GQGVRALSWLLARPDPGGVLSPL*RSPGCL
Trigger: TAAGCACCCTGGAGACCTCCAGAGAGGACTCAAGAC...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCTTTGGCCTCTCCTCTaGGGTCCTGGTCTTGGTCTT +
Preference number: 4 (lower is better)
Translates to: GGCKGVRGSGLCPGFWLVLWPLL*GPGLGL
Trigger: AAGACCAAGACCAGGACCCCAGAGGAGAGGCCAAAG...GACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGATGGTGCGCAAGGCATaGTCCATCATGGTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: GQGVRALSWLLARPDPGGMVRKA*SIMVSC
Trigger: GCAGGAAACCATGATGGACCATGCCTTGCGCACCAT...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTCTGCAATGTAGGAGATaGTGCGCAAGGCATGGTCCA +
Preference number: 4 (lower is better)
Translates to: GGQGVRALSWLLARPDPGLQCRR*CARHGP
Trigger: TGGACCATGCCTTGCGCACCATCTCCTACATTGCAG...ACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCCCTGGGCCCCAGGCGTaGTCTCAATGCAGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGPGPQA*SQCSPE
Trigger: CTCAGGACTGCATTGAGACCACGCCTGGGGCCCAGG...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp ACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCCCCTTGATGATGCCCTaGCACGTAGCCAGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: TRTHPSFEGARGPGWGGCPLMMP*HVARGS
Trigger: GCTGCCCCTGGCTACGTGCCAGGGCATCATCAAGGG...GCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGCTGGTACTTGAGGTCTaGACGCTTGATGAGGACGGT +
Preference number: 4 (lower is better)
Translates to: GQGVRALSWLLARPDPGGLVLEV*TLDEDG
Trigger: ACCGTCCTCATCAAGCGTCCAGACCTCAAGTACCAG...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCACGCTGAAACCCAGCTaGTACTTGAGGTCTGGACGC +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTTLKPS*YLRSGR
Trigger: GCGTCCAGACCTCAAGTACCAGCTGGGTTTCAGCGT...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp GCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGAATCTCGATGATACGGTaGCCGACTCGGACACCACCT +
Preference number: 4 (lower is better)
Translates to: AARGSGGQGFVLASGSSGISMIR*PTRTPP
Trigger: AGGTGGTGTCCGAGTCGGCCACCGTATCATCGAGAT...TCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGATCTCGATGATACGGTaGCCGACTCGGACACCACCT +
Preference number: 4 (lower is better)
Translates to: WLQGGQGVRALSWLLARPISMIR*PTRTPP
Trigger: AGGTGGTGTCCGAGTCGGCCACCGTATCATCGAGAT...CGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp GCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCGGCATGGTCTTCATGTaGATCTCTCCCACCGAGTTA +
Preference number: 4 (lower is better)
Translates to: ARGSGGQGFVLASGSSGPGMVFM*ISPTEL
Trigger: TAACTCGGTGGGAGAGATTCACATGAAGACCATGCC...GGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCTGCTGCTTCCTTGGCTaGTCTAAGCCATTGCAAACC +
Preference number: 4 (lower is better)
Translates to: ARGSGGQGFVLASGSSGPCCFLG*SKPLQT
Trigger: GGTTTGCAATGGCTTAGAGCAGCCAAGGAAGCAGCA...GGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCAGATCAGAGCGCTGCTaGTTCCTTGGCTGCTCTAAG +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTRSERC*FLGCSK
Trigger: CTTAGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCT...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp CCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAGGGGGTCAGGTGTTTTTGGAGGGGTTaGGCTCAGAGAGCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: PSFEGARGPGWGGCKGVRCFWRG*AQRAAG
Trigger: CCCAGCTGCTCTCTGAGCGCAACCCCTCCAAAAACA...CCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp CCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAGGGGGTCAGGGACACCACCTCGCTCTaGAATACCCCCTCTCATGAG +
Preference number: 4 (lower is better)
Translates to: PSFEGARGPGWGGCKGVRDTTSL*NTPSHE
Trigger: CTCATGAGAGGGGGTATTGCAGAGCGAGGTGGTGTC...CCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCGAGCCTAAACATGGCTaGAGGCATGGTCTTCATGTG +
Preference number: 4 (lower is better)
Translates to: GVRALSWLLARPDPGGSAEPKHG*RHGLHV
Trigger: CACATGAAGACCATGCCTGCAGCCATGTTTAGGCTC...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR GCA 90 bp GGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGGAGCCTAAACATGGCTaGAGGCATGGTCTTCATGTG +
Preference number: 4 (lower is better)
Translates to: GCKGVRGSGLCPGFWLVREPKHG*RHGLHV
Trigger: CACATGAAGACCATGCCTGCAGCCATGTTTAGGCTC...CCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCGTTCCCATTGGTCTCTaGGGGGTAATAGTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: GVRALSWLLARPDPGGSAVPIGL*GVIVLV
Trigger: TACCAGGACTATTACCCCCCAGAGACCAATGGGAAC...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCCATGGCCAGTGTCACTaGGTGGACAGGCCTCAGTGG +
Preference number: 4 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGHGQCH*VDRPQW
Trigger: CCACTGAGGCCTGTCCACCCAGTGACACTGGCCATG...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGAAGGCATGGTCCATCATaGTTTCCTGCGTGTCAGCGT +
Preference number: 4 (lower is better)
Translates to: AARGSGGQGFVLASGSSGRHGPS*FPACQR
Trigger: ACGCTGACACGCAGGAAACCATGATGGACCATGCCT...TCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCATGCTTCTTTCCCTCCTaGGCCCCAGGCGTGGTCTCA +
Preference number: 4 (lower is better)
Translates to: QGHTLPLREPEVLVGVAACFFPS*APGVVS
Trigger: TGAGACCACGCCTGGGGCCCAGGAGGGAAAGAAGCA...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp ACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCTGTCAGTGGGCCCATTaGGATCAGAGCGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: TRTHPSFEGARGPGWGGCCQWAH*DQSAAA
Trigger: AGCAGCAGCGCTCTGATCTCAATGGGCCCACTGACA...GCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCGGCATGGTCTTCATGTaGATCTCTCCCACCGAGTTA +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTGMVFM*ISPTEL
Trigger: TAACTCGGTGGGAGAGATTCACATGAAGACCATGCC...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp CCACACTTGGCACAAGTCTCAGCCTGGAAGCCAGGTTGCCCCTGTGCCTGTGCACCCTGTGGTCCAGCATaGTGCTTGCAGTGCTCTGAC +
Preference number: 4 (lower is better)
Translates to: PHLAQVSAWKPGCPCACAPCGPA*CLQCSD
Trigger: GTCAGAGCACTGCAAGCAGCATGCTGGACCACAGGG...TGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCACCCTGTGGTCCAGCATaGTGCTTGCAGTGCTCTGAC +
Preference number: 4 (lower is better)
Translates to: QGHTLPLREPEVLVGVAAPCGPA*CLQCSD
Trigger: GTCAGAGCACTGCAAGCAGCATGCTGGACCACAGGG...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GGTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCAGATGATTCCATTCTaGACGCTGAAACCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: GGCKGVRGSGLCPGFWLVQMIPF*TLKPSW
Trigger: CCAGCTGGGTTTCAGCGTGCAGAATGGAATCATCTG...GACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCGAGCCTAAACATGGCTaGAGGCATGGTCTTCATGTG +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTEPKHG*RHGLHV
Trigger: CACATGAAGACCATGCCTGCAGCCATGTTTAGGCTC...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTCTGGGATAGGCAGGTaGCCATCTGGGTACTCCTGG +
Preference number: 4 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGSGIGR*PSGYSW
Trigger: CCAGGAGTACCCAGATGGCCACCTGCCTATCCCAGA...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGTTCCCATTGGTCTCTaGGGGGTAATAGTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: WLQGGQGVRALSWLLARPVPIGL*GVIVLV
Trigger: TACCAGGACTATTACCCCCCAGAGACCAATGGGAAC...CGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCGCCAGTGTCACTGGGTaGACAGGCCTCAGTGGAATC +
Preference number: 4 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGASVTG*TGLSGI
Trigger: GATTCCACTGAGGCCTGTCCACCCAGTGACACTGGC...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAGGGGGTCAGGGTCTTGAGTCCTCTCTaGAGGTCTCCAGGGTGCTTA +
Preference number: 4 (lower is better)
Translates to: PSFEGARGPGWGGCKGVRVLSPL*RSPGCL
Trigger: TAAGCACCCTGGAGACCTCCAGAGAGGACTCAAGAC...CCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAGGGGGTCAGGATGGTGCGCAAGGCATaGTCCATCATGGTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: PSFEGARGPGWGGCKGVRMVRKA*SIMVSC
Trigger: GCAGGAAACCATGATGGACCATGCCTTGCGCACCAT...CCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGAGCTTTACCTGGGTTTaGTTCTTCAGGCCCTTGATG +
Preference number: 4 (lower is better)
Translates to: GQGVRALSWLLARPDPGGSFTWV*FFRPLM
Trigger: CATCAAGGGCCTGAAGAACCAAACCCAGGTAAAGCT...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp GGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGATGTTGAGCTTTACCTaGGTTTGGTTCTTCAGGCCC +
Preference number: 4 (lower is better)
Translates to: GSGGQGFVLASGSSGPRWMLSFT*VWFFRP
Trigger: GGGCCTGAAGAACCAAACCCAGGTAAAGCTCAACAT...CCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp CCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAGGGGGTCAGGCTGGTACTTGAGGTCTaGACGCTTGATGAGGACGGT +
Preference number: 4 (lower is better)
Translates to: PSFEGARGPGWGGCKGVRLVLEV*TLDEDG
Trigger: ACCGTCCTCATCAAGCGTCCAGACCTCAAGTACCAG...CCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCTGGACTATCTTCTCATaGGCTGTGGCTACCACACTC +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTWTIFS*AVATTL
Trigger: GAGTGTGGTAGCCACAGCCCATGAGAAGATAGTCCA...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGGAGTTAGACAGAGCCTaGACTATCTTCTCATGGGCT +
Preference number: 4 (lower is better)
Translates to: GCKGVRGSGLCPGFWLVRELDRA*TIFSWA
Trigger: AGCCCATGAGAAGATAGTCCAGGCTCTGTCTAACTC...CCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCACATGGCTGCAGGCATaGTCTTCATGTGAATCTCTC +
Preference number: 4 (lower is better)
Translates to: GVRALSWLLARPDPGGSATWLQA*SSCESL
Trigger: GAGAGATTCACATGAAGACCATGCCTGCAGCCATGT...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCACATGGCTGCAGGCATaGTCTTCATGTGAATCTCTC +
Preference number: 4 (lower is better)
Translates to: ARGSGGQGFVLASGSSGPTWLQA*SSCESL
Trigger: GAGAGATTCACATGAAGACCATGCCTGCAGCCATGT...GGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCACTTCTGTCAGTGTCTaGGCATCACCCTCAGAATTC +
Preference number: 4 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTTSVSV*ASPSEF
Trigger: GAATTCTGAGGGTGATGCTCAGACACTGACAGAAGT...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp TGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGGCATGGTCTTCATGTaGATGATTCCATTCTGCACG +
Preference number: 4 (lower is better)
Translates to: WLQGGQGVRALSWLLARPGMVFM*MIPFCT
Trigger: CGTGCAGAATGGAATCATTCACATGAAGACCATGCC...CGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206630.2
CDS-3UTR GCA 90 bp ACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCTGTGGTCCAGCATGCTaGTTGCAGTGCTCTGACGCT +
Preference number: 4 (lower is better)
Translates to: TRTHPSFEGARGPGWGGCCGPAC*LQCSDA
Trigger: AGCGTCAGAGCACTGCAAGCAGCATGCTGGACCACA...GCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp ACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCTCGATGTCTTCCTCCTaGTCCTCTAGGTCCCCATCC +
Preference number: 4 (lower is better)
Translates to: TRTHPSFEGARGPGWGGCSMSSS*SSRSPS
Trigger: GGATGGGGACCTAGAGGAGCAGGAGGAAGACATCGA...GCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp CCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAGGGGGTCAGGTGCTGCTTCCTTGGCTaGTCTAAGCCATTGCAAACC +
Preference number: 4 (lower is better)
Translates to: PSFEGARGPGWGGCKGVRCCFLG*SKPLQT
Trigger: GGTTTGCAATGGCTTAGAGCAGCCAAGGAAGCAGCA...CCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCTGTCCATCATGGTTTCCTaGGTGTCAGCGTTTAAGACC +
Preference number: 4 (lower is better)
Translates to: GQGFVLASGSSGPRWVCLSIMVS*VSAFKT
Trigger: GGTCTTAAACGCTGACACGCAGGAAACCATGATGGA...CAGGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGTCCATCATGGTTTCCTaGGTGTCAGCGTTTAAGACC +
Preference number: 4 (lower is better)
Translates to: WLQGGQGVRALSWLLARPSIMVS*VSAFKT
Trigger: GGTCTTAAACGCTGACACGCAGGAAACCATGATGGA...CGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp GGTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCTAGCTGCAGCTCCTTaGAGTTCTCTGAGTTTGAGA +
Preference number: 4 (lower is better)
Translates to: GGCKGVRGSGLCPGFWLVLAAAP*SSLSLR
Trigger: TCTCAAACTCAGAGAACTGCAAGGAGCTGCAGCTAG...GACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGAAAATCTCACCCTTGTaGTTCTCTAGCTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: WLQGGQGVRALSWLLARPKISPL*FSSCSS
Trigger: GGAGCTGCAGCTAGAGAAGCACAAGGGTGAGATTTT...CGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTCACTCTCAGGCTCCTaGTCATGGGGGATAGGACCT +
Preference number: 4 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGSLSGS*SWGIGP
Trigger: AGGTCCTATCCCCCATGACCAGGAGCCTGAGAGTGA...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCATTGCAAACCTGCTCTTaGGGCCACTTTGGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: QGHTLPLREPEVLVGVAALQTCS*GHFGLS
Trigger: GGAGAGGCCAAAGTGGCCCCAAGAGCAGGTTTGCAA...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCATGTTGAGCTTTACCTaGGTTTGGTTCTTCAGGCCC +
Preference number: 4 (lower is better)
Translates to: VAARGSGGQGFVLASGSSMLSFT*VWFFRP
Trigger: GGGCCTGAAGAACCAAACCCAGGTAAAGCTCAACAT...GGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR GCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCAGATCAGAGCGCTGCTaGTTCCTTGGCTGCTCTAAG +
Preference number: 4 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGRSERC*FLGCSK
Trigger: CTTAGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCT...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CCACACTTGGCACAAGTCTCAGCCTGGAAGCCAGGTTGCCCCTGTGCCTGTGCATGGCCATCTTCTTCCTaGTCATGGACCTCCAGGACA +
Preference number: 4 (lower is better)
Translates to: PHLAQVSAWKPGCPCACAWPSSS*SWTSRT
Trigger: TGTCCTGGAGGTCCATGACCAGGAAGAAGATGGCCA...TGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCAGGCATGGTCCATCATaGTTTCCTGCGTGTCAGCGT +
Preference number: 4 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGRHGPS*FPACQR
Trigger: ACGCTGACACGCAGGAAACCATGATGGACCATGCCT...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp ACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCCTGGTACTTGAGGTCTaGACGCTTGATGAGGACGGT +
Preference number: 4 (lower is better)
Translates to: TRTHPSFEGARGPGWGGCLVLEV*TLDEDG
Trigger: ACCGTCCTCATCAAGCGTCCAGACCTCAAGTACCAG...GCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR TCA 90 bp CCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAGGGGGTCAGGCACAAAGCTTGGAAATaGTGCCACCTTCTTTGTCTC +
Preference number: 4 (lower is better)
Translates to: PSFEGARGPGWGGCKGVRHKAWK*CHLLCL
Trigger: GAGACAAAGAAGGTGGCATCATTTCCAAGCTTTGTG...CCTGACCCCCTTGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCAGTTTGAGAAGTGGATaGGGTCGTCATTATACATCT +
Preference number: 4 (lower is better)
Translates to: GVRALSWLLARPDPGGSASLRSG*GRHYTS
Trigger: AGATGTATAATGACGACCTCATCCACTTCTCAAACT...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCCACCTTCTTTGTCTCTaGGATGTTGTTATTGTCAGT +
Preference number: 4 (lower is better)
Translates to: GVRALSWLLARPDPGGSAHLLCL*DVVIVS
Trigger: ACTGACAATAACAACATCCCAGAGACAAAGAAGGTG...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGAGTTTGAGAAGTaGATGAGGTCGTCATTATAC +
Preference number: 4 (lower is better)
Translates to: GQGVRALSWLLARPDPGGSEFEK*MRSSLY
Trigger: GTATAATGACGACCTCATCCACTTCTCAAACTCAGA...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCATGGACTATCTTCTCATaGGCTGTGGCTACCACACTC +
Preference number: 4 (lower is better)
Translates to: QGHTLPLREPEVLVGVAAWTIFS*AVATTL
Trigger: GAGTGTGGTAGCCACAGCCCATGAGAAGATAGTCCA...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp GCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGCCCTGCTCCTCCACCGCCTCCTaGCACTCATCGGTGTCCACG +
Preference number: 4 (lower is better)
Translates to: AVMRMWQKTGKFHKGLPCSSTAS*HSSVST
Trigger: CGTGGACACCGATGAGTGTCAGGAGGCGGTGGAGGA...GCAGGGCAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp CCACACTTGGCACAAGTCTCAGCCTGGAAGCCAGGTTGCCCCTGTGCCTGTGCAACTTCTGTCAGTGTCTaGGCATCACCCTCAGAATTC +
Preference number: 4 (lower is better)
Translates to: PHLAQVSAWKPGCPCACATSVSV*ASPSEF
Trigger: GAATTCTGAGGGTGATGCTCAGACACTGACAGAAGT...TGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAGCCCAGGTAGTTGGCTaGAAAGATGATTCCATCGAT +
Preference number: 4 (lower is better)
Translates to: QGHTLPLREPEVLVGVAAAQVVG*KDDSID
Trigger: ATCGATGGAATCATCTTTGCAGCCAACTACCTGGGC...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGCCCTGCCCCTTGATGATGCCCTaGCACGTAGCCAGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: AVMRMWQKTGKFHKGLPCPLMMP*HVARGS
Trigger: GCTGCCCCTGGCTACGTGCCAGGGCATCATCAAGGG...GCAGGGCAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCAGCTTTACCTGGGTTTaGTTCTTCAGGCCCTTGATG +
Preference number: 4 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGSFTWV*FFRPLM
Trigger: CATCAAGGGCCTGAAGAACCAAACCCAGGTAAAGCT...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CCA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAATGTTGAGCTTTACCTaGGTTTGGTTCTTCAGGCCC +
Preference number: 4 (lower is better)
Translates to: QGHTLPLREPEVLVGVAAMLSFT*VWFFRP
Trigger: GGGCCTGAAGAACCAAACCCAGGTAAAGCTCAACAT...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR GCA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACCATCCCCACGCCTCATaGGATAGGGGGAGGCGCCAC +
Preference number: 4 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYHPHAS*DRGRRH
Trigger: GTGGCGCCTCCCCCTATCGCATGAGGCGTGGGGATG...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp CCACACTTGGCACAAGTCTCAGCCTGGAAGCCAGGTTGCCCCTGTGCCTGTGCATCTGAGTTTGAGAAGTaGATGAGGTCGTCATTATAC +
Preference number: 4 (lower is better)
Translates to: PHLAQVSAWKPGCPCACASEFEK*MRSSLY
Trigger: GTATAATGACGACCTCATCCACTTCTCAAACTCAGA...TGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGCTCTTGGGGCCACTTTaGCCTCTCCTCTGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLLLGPL*PLLWGP
Trigger: AGGACCCCAGAGGAGAGGCCAAAGTGGCCCCAAGAG...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGTGGGCATGCGGCGCCTaGCCATCAGAACCACGATGT +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLWACGA*PSEPRC
Trigger: ACATCGTGGTTCTGATGGCCAGGCGCCGCATGCCCA...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACTACAGCGGGGTCTCCTaGCCCGTGAGGAGCCTAAAC +
Preference number: 4 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYYSGVS*PVRSLN
Trigger: GTTTAGGCTCCTCACGGGCCAGGAGACCCCGCTGTA...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR TCA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACGTCTCAATGCAGTCCTaGGAGGCTGACCTGGGCATG +
Preference number: 4 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYVSMQS*EADLGM
Trigger: CATGCCCAGGTCAGCCTCTCAGGACTGCATTGAGAC...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGCAGGCGTGGTCTCAATaGAGTCCTGAGAGGCTGACC +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLQAWSQ*SPERLT
Trigger: GGTCAGCCTCTCAGGACTGCATTGAGACCACGCCTG...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACTGCCTCACAGGGCCCTaGAACAGCCACAAAGCTTGG +
Preference number: 4 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYCLTGP*NSHKAW
Trigger: CCAAGCTTTGTGGCTGTTCCAGGGCCCTGTGAGGCA...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGGACACCACCTCGCTCTaGAATACCCCCTCTCATGAG +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLDTTSL*NTPSHE
Trigger: CTCATGAGAGGGGGTATTGCAGAGCGAGGTGGTGTC...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACTCACTCTCAGGCTCCTaGTCATGGGGGATAGGACCT +
Preference number: 4 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYSLSGS*SWGIGP
Trigger: AGGTCCTATCCCCCATGACCAGGAGCCTGAGAGTGA...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGTTGCAAACCTGCTCTTaGGGCCACTTTGGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLLQTCS*GHFGLS
Trigger: GGAGAGGCCAAAGTGGCCCCAAGAGCAGGTTTGCAA...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGCCCTGCAGCTTTACCTGGGTTTaGTTCTTCAGGCCCTTGATG +
Preference number: 4 (lower is better)
Translates to: AVMRMWQKTGKFHKGLPCSFTWV*FFRPLM
Trigger: CATCAAGGGCCTGAAGAACCAAACCCAGGTAAAGCT...GCAGGGCAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp GCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGCCCTGCGAGTTAGACAGAGCCTaGACTATCTTCTCATGGGCT +
Preference number: 4 (lower is better)
Translates to: AVMRMWQKTGKFHKGLPCELDRA*TIFSWA
Trigger: AGCCCATGAGAAGATAGTCCAGGCTCTGTCTAACTC...GCAGGGCAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGAAGCCATTGCAAACCTaGTCTTGGGGCCACTTTGGC +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLKPLQT*SWGHFG
Trigger: GCCAAAGTGGCCCCAAGAGCAGGTTTGCAATGGCTT...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACAAGCCATTGCAAACCTaGTCTTGGGGCCACTTTGGC +
Preference number: 4 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYKPLQT*SWGHFG
Trigger: GCCAAAGTGGCCCCAAGAGCAGGTTTGCAATGGCTT...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGCTGCAATGTAGGAGATaGTGCGCAAGGCATGGTCCA +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLLQCRR*CARHGP
Trigger: TGGACCATGCCTTGCGCACCATCTCCTACATTGCAG...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGATCTTAGCAGCCTTCTaGATCCTCTTGACCCTGCTG +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLILAAF*ILLTLL
Trigger: CAGCAGGGTCAAGAGGATGCAGAAGGCTGCTAAGAT...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032732.15
CDS-3UTR GCA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACCAGATGATTCCATTCTaGACGCTGAAACCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYQMIPF*TLKPSW
Trigger: CCAGCTGGGTTTCAGCGTGCAGAATGGAATCATCTG...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGCTAGCTGCAGCTCCTTaGAGTTCTCTGAGTTTGAGA +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLLAAAP*SSLSLR
Trigger: TCTCAAACTCAGAGAACTGCAAGGAGCTGCAGCTAG...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR GCA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGAAAATCTCACCCTTGTaGTTCTCTAGCTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLKISPL*FSSCSS
Trigger: GGAGCTGCAGCTAGAGAAGCACAAGGGTGAGATTTT...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
3UTR CAA 72 bp AGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATaGCCCTGCAACTCTCCTTCAGTAAGGACATACCTA +
Preference number: 4 (lower is better)
Translates to: RMWQKTGKFHKG*PCNSPSVRTYL
Trigger: TAGGTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CCA 90 bp GGGCCTTGCTTCTTGCCTACCGGGTCCATGGCCAGTGTCACTGGGTaGACAGGCCTCAGTGGAATCCCCGGGATCCAGCTCCGGCATGTG +
Preference number: 5 (lower is better)
Translates to: GPCFLPTGSMASVTG*TGLSGIPGIQLRHV
Trigger: CACATGCCGGAGCTGGATCCCGGGGATTCCACTGAGGCCTGTCCACCCAGTGACACTGGCCATGGACCCGGTAGGCAAGAAGCAAGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp GGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCTTGTCAGTGGGCCCATaGAGATCAGAGCGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: GVRALSWLLARPDPGGSALSVGP*RSERCC
Trigger: GCAGCAGCGCTCTGATCTCAATGGGCCCACTGACAA...GGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp GGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGGCCTTCTGCATCCTCTaGACCCTGCTGACGGCTTCT +
Preference number: 5 (lower is better)
Translates to: GQGVRALSWLLARPDPGGAFCIL*TLLTAS
Trigger: AGAAGCCGTCAGCAGGGTCAAGAGGATGCAGAAGGC...CCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032732.15
CDS GCA 90 bp GGTGGACAGGCCTCAGTGGAATCCCCGGGATCCAGCTCCGGCATGTaGTCAGGGCTGGCCTCGCTGGCACTGGTAATACTGGTCATGCTC +
Preference number: 5 (lower is better)
Translates to: GGQASVESPGSSSGM*SGLASLALVILVML
Trigger: GAGCATGACCAGTATTACCAGTGCCAGCGAGGCCAGCCCTGAGCACATGCCGGAGCTGGATCCCGGGGATTCCACTGAGGCCTGTCCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp GGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCCTGGTCTTGGTCTaGAGTCCTCTCTGGAGGTCT +
Preference number: 5 (lower is better)
Translates to: GSGGQGFVLASGSSGPRWVLVLV*SPLWRS
Trigger: AGACCTCCAGAGAGGACTCAAGACCAAGACCAGGAC...CCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCTCTGGGGTCCTGGTCTaGGTCTTGAGTCCTCTCTGG +
Preference number: 5 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTSGVLV*VLSPLW
Trigger: CCAGAGAGGACTCAAGACCAAGACCAGGACCCCAGA...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp CTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACTCTGGGGTCCTGGTCTaGGTCTTGAGTCCTCTCTGG +
Preference number: 5 (lower is better)
Translates to: LQGGQGVRALSWLLARPDSGVLV*VLSPLW
Trigger: CCAGAGAGGACTCAAGACCAAGACCAGGACCCCAGA...GTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCGGCTGCTCTAAGCCATaGCAAACCTGCTCTTGGGGC +
Preference number: 5 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTGCSKP*QTCSWG
Trigger: GCCCCAAGAGCAGGTTTGCAATGGCTTAGAGCAGCC...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp GGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGCCTGCTGACGGCTTCTaGAGCCTGCATCATTCGGAT +
Preference number: 5 (lower is better)
Translates to: GCKGVRGSGLCPGFWLVRPADGF*SLHHSD
Trigger: ATCCGAATGATGCAGGCTCAAGAAGCCGTCAGCAGG...CCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp GCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCTGGTTCTTCAGGCCCTaGATGATGCCCTGGCACGTA +
Preference number: 5 (lower is better)
Translates to: ARGSGGQGFVLASGSSGPWFFRP*MMPWHV
Trigger: TACGTGCCAGGGCATCATCAAGGGCCTGAAGAACCA...GGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp GGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCTGTTGAGGTCTGGACGCTaGATGAGGACGGTGGTGACC +
Preference number: 5 (lower is better)
Translates to: GQGFVLASGSSGPRWVCLLRSGR*MRTVVT
Trigger: GGTCACCACCGTCCTCATCAAGCGTCCAGACCTCAA...CAGGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp TGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCGTCCTGGTCTTGGTCTaGAGTCCTCTCTGGAGGTCT +
Preference number: 5 (lower is better)
Translates to: CKGVRGSGLCPGFWLVRTVLVLV*SPLWRS
Trigger: AGACCTCCAGAGAGGACTCAAGACCAAGACCAGGAC...GGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp TGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGTGGTTCTTCAGGCCCTaGATGATGCCCTGGCACGTA +
Preference number: 5 (lower is better)
Translates to: WLQGGQGVRALSWLLARPWFFRP*MMPWHV
Trigger: TACGTGCCAGGGCATCATCAAGGGCCTGAAGAACCA...CGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp GGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTAAACCCAGCTGGTACTaGAGGTCTGGACGCTTGATG +
Preference number: 5 (lower is better)
Translates to: GGQGVRALSWLLARPDPGKPSWY*RSGRLM
Trigger: CATCAAGCGTCCAGACCTCAAGTACCAGCTGGGTTT...ACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp GCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCGAGCTTTACCTGGGTTaGGTTCTTCAGGCCCTTGAT +
Preference number: 5 (lower is better)
Translates to: ARGSGGQGFVLASGSSGPELYLG*VLQALD
Trigger: ATCAAGGGCCTGAAGAACCAAACCCAGGTAAAGCTC...GGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp CTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACGGGCAGCTGACAATGTaGAGCTTTACCTGGGTTTGG +
Preference number: 5 (lower is better)
Translates to: LQGGQGVRALSWLLARPDGQLTM*SFTWVW
Trigger: CCAAACCCAGGTAAAGCTCAACATTGTCAGCTGCCC...GTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp TGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGGGCAGCTGACAATGTaGAGCTTTACCTGGGTTTGG +
Preference number: 5 (lower is better)
Translates to: WLQGGQGVRALSWLLARPGQLTM*SFTWVW
Trigger: CCAAACCCAGGTAAAGCTCAACATTGTCAGCTGCCC...CGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp GGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGTCAGCGTTTAAGACCTaGATCCTCTGGGTCGAAATG +
Preference number: 5 (lower is better)
Translates to: GSGGQGFVLASGSSGPRWSAFKT*ILWVEM
Trigger: CATTTCGACCCAGAGGATCAAGGTCTTAAACGCTGA...CCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp ACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCTTGAGGTCTGGACGCTaGATGAGGACGGTGGTGACC +
Preference number: 5 (lower is better)
Translates to: TRTHPSFEGARGPGWGGCLRSGR*MRTVVT
Trigger: GGTCACCACCGTCCTCATCAAGCGTCCAGACCTCAA...GCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCATTGAGGTCTGGACGCTaGATGAGGACGGTGGTGACC +
Preference number: 5 (lower is better)
Translates to: QGHTLPLREPEVLVGVAALRSGR*MRTVVT
Trigger: GGTCACCACCGTCCTCATCAAGCGTCCAGACCTCAA...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp GGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGACCCAGGTGGGTCTGCCTGGAACAGCCACAAAGCTaGGAAATGATGCCACCTTCT +
Preference number: 5 (lower is better)
Translates to: GQGFVLASGSSGPRWVCLEQPQS*EMMPPS
Trigger: AGAAGGTGGCATCATTTCCAAGCTTTGTGGCTGTTC...CAGGCAGACCCACCTGGGTCCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp GTGACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCCCTGCTGACGGCTTCTaGAGCCTGCATCATTCGGAT +
Preference number: 5 (lower is better)
Translates to: VTRTHPSFEGARGPGWGGPADGF*SLHHSD
Trigger: ATCCGAATGATGCAGGCTCAAGAAGCCGTCAGCAGG...GCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp GTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCTCAGCGTTTAAGACCTaGATCCTCTGGGTCGAAATG +
Preference number: 5 (lower is better)
Translates to: VAARGSGGQGFVLASGSSSAFKT*ILWVEM
Trigger: CATTTCGACCCAGAGGATCAAGGTCTTAAACGCTGA...GGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCATGGTTCTTCAGGCCCTaGATGATGCCCTGGCACGTA +
Preference number: 5 (lower is better)
Translates to: QGHTLPLREPEVLVGVAAWFFRP*MMPWHV
Trigger: TACGTGCCAGGGCATCATCAAGGGCCTGAAGAACCA...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS CCA 90 bp CTCCAGGACAGTAGGGTCATCCTCTGGGATAGGCAGGTGGCCATCTaGGTACTCCTGGCTGTTTTCAGCCCCGTGGCTATGAGTATGAGG +
Preference number: 5 (lower is better)
Translates to: LQDSRVILWDRQVAI*VLLAVFSPVAMSMR
Trigger: CCTCATACTCATAGCCACGGGGCTGAAAACAGCCAGGAGTACCCAGATGGCCACCTGCCTATCCCAGAGGATGACCCTACTGTCCTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp GGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCCGGATGATGCCACCTTCTTaGTCTCTGGGATGTTGTTAT +
Preference number: 5 (lower is better)
Translates to: GCKGVRGSGLCPGFWLVRMMPPS*SLGCCY
Trigger: ATAACAACATCCCAGAGACAAAGAAGGTGGCATCAT...CCGGACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp ACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCGGGCAGCTGACAATGTaGAGCTTTACCTGGGTTTGG +
Preference number: 5 (lower is better)
Translates to: TRTHPSFEGARGPGWGGCGQLTM*SFTWVW
Trigger: CCAAACCCAGGTAAAGCTCAACATTGTCAGCTGCCC...GCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAAAACCCAGCTGGTACTaGAGGTCTGGACGCTTGATG +
Preference number: 5 (lower is better)
Translates to: QGHTLPLREPEVLVGVAAKPSWY*RSGRLM
Trigger: CATCAAGCGTCCAGACCTCAAGTACCAGCTGGGTTT...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp ACAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCTCACCCTCAGAATTCTaGACCCTGCTGACGGCTTCT +
Preference number: 5 (lower is better)
Translates to: TRTHPSFEGARGPGWGGCSPSEF*TLLTAS
Trigger: AGAAGCCGTCAGCAGGGTCAAGAATTCTGAGGGTGA...GCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206246.2
CDS GCA 90 bp TTGTCAGTGGGCCCATTGAGATCAGAGCGCTGCTGCTTCCTTGGCTaGTCTAAGCCATTGCAAACCTGCTCTTGGGGCCACTTTGGCCTC +
Preference number: 5 (lower is better)
Translates to: LSVGPLRSERCCFLG*SKPLQTCSWGHFGL
Trigger: GAGGCCAAAGTGGCCCCAAGAGCAGGTTTGCAATGGCTTAGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCTCAATGGGCCCACTGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAGAGCTTTACCTGGGTTaGGTTCTTCAGGCCCTTGAT +
Preference number: 5 (lower is better)
Translates to: QGHTLPLREPEVLVGVAAELYLG*VLQALD
Trigger: ATCAAGGGCCTGAAGAACCAAACCCAGGTAAAGCTC...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp CCACACTTGGCACAAGTCTCAGCCTGGAAGCCAGGTTGCCCCTGTGCCTGTGCAGAGCTTTACCTGGGTTaGGTTCTTCAGGCCCTTGAT +
Preference number: 5 (lower is better)
Translates to: PHLAQVSAWKPGCPCACAELYLG*VLQALD
Trigger: ATCAAGGGCCTGAAGAACCAAACCCAGGTAAAGCTC...TGCACAGGCACAGGGGCAACCTGGCTTCCAGGCTGAGACTTGTGCCAAGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS GCA 90 bp GATGTACAGCGGGGTCTCCTGGCCCGTGAGGAGCCTAAACATGGCTaGAGGCATGGTCTTCATGTGAATGATTCCATTCTGCACGCTGAA +
Preference number: 5 (lower is better)
Translates to: DVQRGLLAREEPKHG*RHGLHVNDSILHAE
Trigger: TTCAGCGTGCAGAATGGAATCATTCACATGAAGACCATGCCTGCAGCCATGTTTAGGCTCCTCACGGGCCAGGAGACCCCGCTGTACATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206630.2
CDS-3UTR CAA 90 bp GGTGGCTGCAAGGGGGTCAGGGGGTCAGGGCTTTGTCCTGGCTTCTGGCTCGTCGTCATTATACATCTCTaGGGTATTTATGATGTCGCT +
Preference number: 5 (lower is better)
Translates to: GGCKGVRGSGLCPGFWLVVIIHL*GIYDVA
Trigger: AGCGACATCATAAATACCCAAGAGATGTATAATGAC...GACGAGCCAGAAGCCAGGACAAAGCCCTGACCCCCTGACCCCCTTGCAGCCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp TCATCAGCCGTGATGAGAATGTGGCAGAAGACTGGTAAGTTTCACAAAGGATTGGCTCTTGGGGCCACTTaGGCCTCTCCTCTGGGGTCC +
Preference number: 5 (lower is better)
Translates to: SSAVMRMWQKTGKFHKGLALGAT*ASPLGS
Trigger: GGACCCCAGAGGAGAGGCCAAAGTGGCCCCAAGAGC...CAATCCTTTGTGAAACTTACCAGTCTTCTGCCACATTCTCATCACGGCTGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp CAAGGACACACCCTTCCTTTGAGGGAGCCAGAGGTCCTGGTTGGGGTGGCTGCAATGATGCCACCTTCTTaGTCTCTGGGATGTTGTTAT +
Preference number: 5 (lower is better)
Translates to: QGHTLPLREPEVLVGVAAMMPPS*SLGCCY
Trigger: ATAACAACATCCCAGAGACAAAGAAGGTGGCATCAT...TGCAGCCACCCCAACCAGGACCTCTGGCTCCCTCAAAGGAAGGGTGTGTCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS TCA 90 bp CCACCTTCTTTGTCTCTGGGATGTTGTTATTGTCAGTGGGCCCATTaGGATCAGAGCGCTGCTGCTTCCTTGGCTGCTCTAAGCCATTGC +
Preference number: 5 (lower is better)
Translates to: PPSLSLGCCYCQWAH*DQSAAASLAALSHC
Trigger: GCAATGGCTTAGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCTCAATGGGCCCACTGACAATAACAACATCCCAGAGACAAAGAAGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS GCA 90 bp TCTGGGATGTTGTTATTGTCAGTGGGCCCATTGAGATCAGAGCGCTaGTGCTTCCTTGGCTGCTCTAAGCCATTGCAAACCTGCTCTTGG +
Preference number: 5 (lower is better)
Translates to: SGMLLLSVGPLRSER*CFLGCSKPLQTCSW
Trigger: CCAAGAGCAGGTTTGCAATGGCTTAGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCTCAATGGGCCCACTGACAATAACAACATCCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS TCA 90 bp GTCTTCTGCCTCACAGGGCCCTGGAACAGCCACAAAGCTTGGAAATaGTGCCACCTTCTTTGTCTCTGGGATGTTGTTATTGTCAGTGGG +
Preference number: 5 (lower is better)
Translates to: VFCLTGPWNSHKAWK*CHLLCLWDVVIVSG
Trigger: CCCACTGACAATAACAACATCCCAGAGACAAAGAAGGTGGCATCATTTCCAAGCTTTGTGGCTGTTCCAGGGCCCTGTGAGGCAGAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACGGCTGCTCTAAGCCATaGCAAACCTGCTCTTGGGGC +
Preference number: 5 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYGCSKP*QTCSWG
Trigger: GCCCCAAGAGCAGGTTTGCAATGGCTTAGAGCAGCC...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACAAACCCAGCTGGTACTaGAGGTCTGGACGCTTGATG +
Preference number: 5 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYKPSWY*RSGRLM
Trigger: CATCAAGCGTCCAGACCTCAAGTACCAGCTGGGTTT...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS-3UTR CAA 90 bp ACTGGTAAGTTTCACAAAGGATTGCCCTGCAACTCTCCTTCAGTAAGGACATACGAACAGCCACAAAGCTaGGAAATGATGCCACCTTCT +
Preference number: 5 (lower is better)
Translates to: TGKFHKGLPCNSPSVRTYEQPQS*EMMPPS
Trigger: AGAAGGTGGCATCATTTCCAAGCTTTGTGGCTGTTC...GTATGTCCTTACTGAAGGAGAGTTGCAGGGCAATCCTTTGTGAAACTTACCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS TCA 72 bp CCCTCCTGGGCCCCAGGCGTGGTCTCAATGCAGTCCTaGGAGGCTGACCTGGGCATGCGGCGCCTGGCCATC +
Preference number: 6 (lower is better)
Translates to: PSWAPGVVSMQS*EADLGMRRLAI
Trigger: GATGGCCAGGCGCCGCATGCCCAGGTCAGCCTCTCAGGACTGCATTGAGACCACGCCTGGGGCCCAGGAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS TCA 72 bp GGCCCCAGGCGTGGTCTCAATGCAGTCCTGAGAGGCTaGCCTGGGCATGCGGCGCCTGGCCATCAGAACCAC +
Preference number: 6 (lower is better)
Translates to: GPRRGLNAVLRG*PGHAAPGHQNH
Trigger: GTGGTTCTGATGGCCAGGCGCCGCATGCCCAGGTCAGCCTCTCAGGACTGCATTGAGACCACGCCTGGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS TCA 72 bp GGGCCCACTGAGTCCGTCCAGTCCTCCACCGCCTCCTaGCACTCATCGGTGTCCACGGGATGTGCACCGTGT +
Preference number: 6 (lower is better)
Translates to: GPTESVQSSTAS*HSSVSTGCAPC
Trigger: ACACGGTGCACATCCCGTGGACACCGATGAGTGTCAGGAGGCGGTGGAGGACTGGACGGACTCAGTGGGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS GCA 72 bp GCCTCAGTGGAATCCCCGGGATCCAGCTCCGGCATGTaGTCAGGGCTGGCCTCGCTGGCACTGGTAATACTG +
Preference number: 6 (lower is better)
Translates to: ASVESPGSSSGM*SGLASLALVIL
Trigger: CAGTATTACCAGTGCCAGCGAGGCCAGCCCTGAGCACATGCCGGAGCTGGATCCCGGGGATTCCACTGAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CCA 72 bp TCCAGAGGCAGTTCTGTGTCCTCACTCTCAGGCTCCTaGTCATGGGGGATAGGACCTGGCCTGGCCCTGTGG +
Preference number: 6 (lower is better)
Translates to: SRGSSVSSLSGS*SWGIGPGLALW
Trigger: CCACAGGGCCAGGCCAGGTCCTATCCCCCATGACCAGGAGCCTGAGAGTGAGGACACAGAACTGCCTCTGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032732.15
ENSMUST00000205604.2
ENSMUST00000205613.2
ENSMUST00000206246.2
CDS CCA 72 bp TTCTTGCCTACCGGGTCCATGGCCAGTGTCACTGGGTaGACAGGCCTCAGTGGAATCCCCGGGATCCAGCTC +
Preference number: 6 (lower is better)
Translates to: FLPTGSMASVTG*TGLSGIPGIQL
Trigger: GAGCTGGATCCCGGGGATTCCACTGAGGCCTGTCCACCCAGTGACACTGGCCATGGACCCGGTAGGCAAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CCA 72 bp CAGGCGTGGTCTCAATGCAGTCCTGAGAGGCTGACCTaGGCATGCGGCGCCTGGCCATCAGAACCACGATGT +
Preference number: 6 (lower is better)
Translates to: QAWSQCSPERLT*ACGAWPSEPRC
Trigger: ACATCGTGGTTCTGATGGCCAGGCGCCGCATGCCCAGGTCAGCCTCTCAGGACTGCATTGAGACCACGCCTG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CCA 72 bp TTGCTTCTTGCCTACCGGGTCCATGGCCAGTGTCACTaGGTGGACAGGCCTCAGTGGAATCCCCGGGATCCA +
Preference number: 6 (lower is better)
Translates to: LLLAYRVHGQCH*VDRPQWNPRDP
Trigger: TGGATCCCGGGGATTCCACTGAGGCCTGTCCACCCAGTGACACTGGCCATGGACCCGGTAGGCAAGAAGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CCA 72 bp CTGGTCATGGACCTCCAGGACAGTAGGGTCATCCTCTaGGATAGGCAGGTGGCCATCTGGGTACTCCTGGCT +
Preference number: 6 (lower is better)
Translates to: LVMDLQDSRVIL*DRQVAIWVLLA
Trigger: AGCCAGGAGTACCCAGATGGCCACCTGCCTATCCCAGAGGATGACCCTACTGTCCTGGAGGTCCATGACCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CCA 72 bp GCAAACCTGCTCTTGGGGCCACTTTGGCCTCTCCTCTaGGGTCCTGGTCTTGGTCTTGAGTCCTCTCTGGAG +
Preference number: 6 (lower is better)
Translates to: ANLLLGPLWPLL*GPGLGLESSLE
Trigger: CTCCAGAGAGGACTCAAGACCAAGACCAGGACCCCAGAGGAGAGGCCAAAGTGGCCCCAAGAGCAGGTTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CAA 90 bp ACCTGCTCTTGGGGCCACTTTGGCCTCTCCTCTGGGGTCCTGGTCTaGGTCTTGAGTCCTCTCTGGAGGTCTCCAGGGTGCTTAACCTCA +
Preference number: 6 (lower is better)
Translates to: TCSWGHFGLSSGVLV*VLSPLWRSPGCLTS
Trigger: TGAGGTTAAGCACCCTGGAGACCTCCAGAGAGGACTCAAGACCAAGACCAGGACCCCAGAGGAGAGGCCAAAGTGGCCCCAAGAGCAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS GCA 72 bp GGCCCATTGAGATCAGAGCGCTGCTGCTTCCTTGGCTaGTCTAAGCCATTGCAAACCTGCTCTTGGGGCCAC +
Preference number: 6 (lower is better)
Translates to: GPLRSERCCFLG*SKPLQTCSWGH
Trigger: GTGGCCCCAAGAGCAGGTTTGCAATGGCTTAGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCTCAATGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CAA 72 bp CACTTTGGCCTCTCCTCTGGGGTCCTGGTCTTGGTCTaGAGTCCTCTCTGGAGGTCTCCAGGGTGCTTAACC +
Preference number: 6 (lower is better)
Translates to: HFGLSSGVLVLV*SPLWRSPGCLT
Trigger: GGTTAAGCACCCTGGAGACCTCCAGAGAGGACTCAAGACCAAGACCAGGACCCCAGAGGAGAGGCCAAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS GCA 72 bp CACCGCCTCCTGACACTCATCGGTGTCCACGGGATGTaGACCGTGTGCTATGTATTCCTCCCCATTACAGTC +
Preference number: 6 (lower is better)
Translates to: HRLLTLIGVHGM*TVCYVFLPITV
Trigger: GACTGTAATGGGGAGGAATACATAGCACACGGTGCACATCCCGTGGACACCGATGAGTGTCAGGAGGCGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS TCA 72 bp AGGAGCCTAAACATGGCTGCAGGCATGGTCTTCATGTaGATCTCTCCCACCGAGTTAGACAGAGCCTGGACT +
Preference number: 6 (lower is better)
Translates to: RSLNMAAGMVFM*ISPTELDRAWT
Trigger: AGTCCAGGCTCTGTCTAACTCGGTGGGAGAGATTCACATGAAGACCATGCCTGCAGCCATGTTTAGGCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS GCA 72 bp GATTCCACGACCACCACACCCAAAATCTCACCCTTGTaGTTCTCTAGCTGCAGCTCCTTGCAGTTCTCTGAG +
Preference number: 6 (lower is better)
Translates to: DSTTTTPKISPL*FSSCSSLQFSE
Trigger: CTCAGAGAACTGCAAGGAGCTGCAGCTAGAGAAGCACAAGGGTGAGATTTTGGGTGTGGTGGTCGTGGAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CAA 90 bp GCCACCTTCTTTGTCTCTGGGATGTTGTTATTGTCAGTGGGCCCATaGAGATCAGAGCGCTGCTGCTTCCTTGGCTGCTCTAAGCCATTG +
Preference number: 6 (lower is better)
Translates to: ATFFVSGMLLLSVGP*RSERCCFLGCSKPL
Trigger: CAATGGCTTAGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCTCAATGGGCCCACTGACAATAACAACATCCCAGAGACAAAGAAGGTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS TCA 72 bp TTGTCTCTGGGATGTTGTTATTGTCAGTGGGCCCATTaGGATCAGAGCGCTGCTGCTTCCTTGGCTGCTCTA +
Preference number: 6 (lower is better)
Translates to: LSLGCCYCQWAH*DQSAAASLAAL
Trigger: TAGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCTCAATGGGCCCACTGACAATAACAACATCCCAGAGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS GCA 72 bp TTGTTATTGTCAGTGGGCCCATTGAGATCAGAGCGCTaGTGCTTCCTTGGCTGCTCTAAGCCATTGCAAACC +
Preference number: 6 (lower is better)
Translates to: LLLSVGPLRSER*CFLGCSKPLQT
Trigger: GGTTTGCAATGGCTTAGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCTCAATGGGCCCACTGACAATAACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CAA 72 bp TTTGTCTCTGGGATGTTGTTATTGTCAGTGGGCCCATaGAGATCAGAGCGCTGCTGCTTCCTTGGCTGCTCT +
Preference number: 6 (lower is better)
Translates to: FVSGMLLLSVGP*RSERCCFLGCS
Trigger: AGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCTCAATGGGCCCACTGACAATAACAACATCCCAGAGACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CAA 72 bp AATGATGCCACCTTCTTTGTCTCTGGGATGTTGTTATaGTCAGTGGGCCCATTGAGATCAGAGCGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: NDATFFVSGMLL*SVGPLRSERCC
Trigger: GCAGCAGCGCTCTGATCTCAATGGGCCCACTGACAATAACAACATCCCAGAGACAAAGAAGGTGGCATCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS TCA 72 bp CTCACAGGGCCCTGGAACAGCCACAAAGCTTGGAAATaGTGCCACCTTCTTTGTCTCTGGGATGTTGTTATT +
Preference number: 6 (lower is better)
Translates to: LTGPWNSHKAWK*CHLLCLWDVVI
Trigger: AATAACAACATCCCAGAGACAAAGAAGGTGGCATCATTTCCAAGCTTTGTGGCTGTTCCAGGGCCCTGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2
CDS CAA 72 bp GAACAGCCACAAAGCTTGGAAATGATGCCACCTTCTTaGTCTCTGGGATGTTGTTATTGTCAGTGGGCCCAT +
Preference number: 6 (lower is better)
Translates to: EQPQSLEMMPPS*SLGCCYCQWAH
Trigger: ATGGGCCCACTGACAATAACAACATCCCAGAGACAAAGAAGGTGGCATCATTTCCAAGCTTTGTGGCTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032732.15
ENSMUST00000206246.2