RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AP5B1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049562

Ensembl transcript IDs: ENSMUST00000096318.4, ENSMUST00000235542.2, ENSMUST00000235575.2

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp AGAACAAGGGCCAGAAGCAGGCTGACAGGCTGGATGGGACCTGTTTaGCCTGGGAGGCTCCGCAGCATCCCCAGGGCGCCGGCCAGCAGC +
Preference number: 5 (lower is better)
Translates to: RTRARSRLTGWMGPV*PGRLRSIPRAPASS
Trigger: GCTGCTGGCCGGCGCCCTGGGGATGCTGCGGAGCCTCCCAGGGCAAACAGGTCCCATCCAGCCTGTCAGCCTGCTTCTGGCCCTTGTTCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 90 bp CCGCCTGTCCGCAGCAGAGCACGGCACACCCGCAGTAGGGCCTGGTaGAGGCCCCAGTCGGTGCAGTGCACAGCTGCAGCCTGTAGAAAG +
Preference number: 5 (lower is better)
Translates to: PPVRSRARHTRSRAW*RPQSVQCTAAACRK
Trigger: CTTTCTACAGGCTGCAGCTGTGCACTGCACCGACTGGGGCCTCCACCAGGCCCTACTGCGGGTGTGCCGTGCTCTGCTGCGGACAGGCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 90 bp CAGAGAGTGGCCAAGGCCCGGGGACCACCATCCAGGGCTGCCCTTTaGTGTAGCCCAGCCAGCACCTCCTGTAGGAACCACTGTGGGCCC +
Preference number: 5 (lower is better)
Translates to: QRVAKARGPPSRAAL*CSPASTSCRNHCGP
Trigger: GGGCCCACAGTGGTTCCTACAGGAGGTGCTGGCTGGGCTACAGCAAAGGGCAGCCCTGGATGGTGGTCCCCGGGCCTTGGCCACTCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 90 bp CGGGCAGGGGCTGGGCATCGGGGCTGCAGAAGCAGGTACAGAGGATaGGCAGGTTGTCCCGGACGCAAGCAGGGTATGTGGACAGCCTCC +
Preference number: 5 (lower is better)
Translates to: RAGAGHRGCRSRYRG*AGCPGRKQGMWTAS
Trigger: GGAGGCTGTCCACATACCCTGCTTGCGTCCGGGACAACCTGCGCATCCTCTGTACCTGCTTCTGCAGCCCCGATGCCCAGCCCCTGCCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 90 bp GACCCAAATCCTCACCTTCGGCACCTGCCAGAAAGGCGGATGGGCTaGCTCGGAAGGCCCCCAGGCGCTGGGCCCAGGCTTCTCGACCTA +
Preference number: 5 (lower is better)
Translates to: DPNPHLRHLPERRMG*LGRPPGAGPRLLDL
Trigger: TAGGTCGAGAAGCCTGGGCCCAGCGCCTGGGGGCCTTCCGAGCCAGCCCATCCGCCTTTCTGGCAGGTGCCGAAGGTGAGGATTTGGGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096318.4
ENSMUST00000235542.2
ENSMUST00000235575.2
CDS CCA 90 bp TGCCAGCAAAGGGCTTCGCTCTCGCCTGGCCTGGCCACCGCCTCTTaGAGCAGCACCTCCCTGAGGGGCTCTCTCAGCTCAGGGCTTACC +
Preference number: 5 (lower is better)
Translates to: CQQRASLSPGLATAS*SSTSLRGSLSSGLT
Trigger: GGTAAGCCCTGAGCTGAGAGAGCCCCTCAGGGAGGTGCTGCTCCAAGAGGCGGTGGCCAGGCCAGGCGAGAGCGAAGCCCTTTGCTGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 90 bp ACAGTGTCAGCTGTGCCGTGCCCAGCAGCCGAACCAGCTGTGGCTTaGAAAGCACTGGTGGCTGTCCCCGAAGACCCCGGAGGGCCCAGC +
Preference number: 5 (lower is better)
Translates to: TVSAVPCPAAEPAVA*KALVAVPEDPGGPS
Trigger: GCTGGGCCCTCCGGGGTCTTCGGGGACAGCCACCAGTGCTTTTCAAGCCACAGCTGGTTCGGCTGCTGGGCACGGCACAGCTGACACTGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 90 bp GGTCAGCAAAGTTCACAGACAGGGGTGGCAGGCGGGCATGGCACGTaGGGCCAGCGGATGTGCTGTAAAGGGCCCGGACGTGTAGGCGGG +
Preference number: 5 (lower is better)
Translates to: GQQSSQTGVAGGHGT*GQRMCCKGPGRVGG
Trigger: CCCGCCTACACGTCCGGGCCCTTTACAGCACATCCGCTGGCCTCACGTGCCATGCCCGCCTGCCACCCCTGTCTGTGAACTTTGCTGACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 90 bp TTCCACACGGAAGCGCAGCTCCAGCGAGTAGACGGGAGCATCCAGTaGCTGCACCTGCAGACACAGCACCGGGAGCGGGCCTTTGGCCTG +
Preference number: 5 (lower is better)
Translates to: FHTEAQLQRVDGSIQ*LHLQTQHRERAFGL
Trigger: CAGGCCAAAGGCCCGCTCCCGGTGCTGTGTCTGCAGGTGCAGGCACTGGATGCTCCCGTCTACTCGCTGGAGCTGCGCTTCCGTGTGGAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 90 bp AGCACAGAGCAGACACAGCAAATGCAGGCGGGCCAGGAGAACCGTTaGGTCATGAAGGAGACTGGGCATGAGGCCCCGGCACAGCTGGGG +
Preference number: 5 (lower is better)
Translates to: STEQTQQMQAGQENR*VMKETGHEAPAQLG
Trigger: CCCCAGCTGTGCCGGGGCCTCATGCCCAGTCTCCTTCATGACCCAACGGTTCTCCTGGCCCGCCTGCATTTGCTGTGTCTGCTCTGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 90 bp CATCCAGTGCCTGCACCTGCAGACACAGCACCGGGAGCGGGCCTTTaGCCTGCTGAGGCCCCACACTCAACTGAATTGGGGCTGAGGTCT +
Preference number: 5 (lower is better)
Translates to: HPVPAPADTAPGAGL*PAEAPHSTELGLRS
Trigger: AGACCTCAGCCCCAATTCAGTTGAGTGTGGGGCCTCAGCAGGCCAAAGGCCCGCTCCCGGTGCTGTGTCTGCAGGTGCAGGCACTGGATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 90 bp GGAGGCCCCAGTCGGTGCAGTGCACAGCTGCAGCCTGTAGAAAGCTaGGTGTGGTACTCTGAGTGGCCCCCTCTGCCACCTTTGCCAGCA +
Preference number: 5 (lower is better)
Translates to: GGPSRCSAQLQPVES*VWYSEWPPLPPLPA
Trigger: TGCTGGCAAAGGTGGCAGAGGGGGCCACTCAGAGTACCACACTCAGCTTTCTACAGGCTGCAGCTGTGCACTGCACCGACTGGGGCCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 90 bp GTCCGTCAGCATTCTCTAGCTGTCTGGCCAGTTCCTGCAGCAAGTTaGCCAGACCATCTCCCCCGCCTGTCCGCAGCAGAGCACGGCACA +
Preference number: 5 (lower is better)
Translates to: VRQHSLAVWPVPAAS*PDHLPRLSAAEHGT
Trigger: TGTGCCGTGCTCTGCTGCGGACAGGCGGGGGAGATGGTCTGGCCAACTTGCTGCAGGAACTGGCCAGACAGCTAGAGAATGCTGACGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 90 bp GGGCCCAGCCCAACAGCCACAGAAGTTGAGCCTGAGCCACAGGAGTaGGCAGATAGGAAGTGTCCAGAAGCTGGGCCACGGCAGCCTTCA +
Preference number: 5 (lower is better)
Translates to: GPSPTATEVEPEPQE*ADRKCPEAGPRQPS
Trigger: TGAAGGCTGCCGTGGCCCAGCTTCTGGACACTTCCTATCTGCTCACTCCTGTGGCTCAGGCTCAACTTCTGTGGCTGTTGGGCTGGGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 90 bp ACAAAGGGCTCTAGGTACTGGGACACCAAGGCCTCCAGGCCCTGCTaGCCAAGTGGACACCACACACGGCTCTCTACGCCCTTTGGTAGG +
Preference number: 5 (lower is better)
Translates to: TKGSRYWDTKASRPC*PSGHHTRLSTPFGR
Trigger: CCTACCAAAGGGCGTAGAGAGCCGTGTGTGGTGTCCACTTGGGCAGCAGGGCCTGGAGGCCTTGGTGTCCCAGTACCTAGAGCCCTTTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 90 bp ACTGTACCACCAAGGTGTCGTGTAGAACAAGGGCCAGAAGCAGGCTaGCAGGCTGGATGGGACCTGTTTGCCCTGGGAGGCTCCGCAGCA +
Preference number: 5 (lower is better)
Translates to: TVPPRCRVEQGPEAG*QAGWDLFALGGSAA
Trigger: TGCTGCGGAGCCTCCCAGGGCAAACAGGTCCCATCCAGCCTGTCAGCCTGCTTCTGGCCCTTGTTCTACACGACACCTTGGTGGTACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 90 bp ACTACAAAGGGCTCTAGGTACTGGGACACCAAGGCCTCCAGGCCCTaGTGCCCAAGTGGACACCACACACGGCTCTCTACGCCCTTTGGT +
Preference number: 5 (lower is better)
Translates to: TTKGSRYWDTKASRP*CPSGHHTRLSTPFG
Trigger: ACCAAAGGGCGTAGAGAGCCGTGTGTGGTGTCCACTTGGGCAGCAGGGCCTGGAGGCCTTGGTGTCCCAGTACCTAGAGCCCTTTGTAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 90 bp AGTATAGTCGGGCATGGTCCCGTCCGTCAGCATTCTCTAGCTGTCTaGCCAGTTCCTGCAGCAAGTTGGCCAGACCATCTCCCCCGCCTG +
Preference number: 5 (lower is better)
Translates to: SIVGHGPVRQHSLAV*PVPAASWPDHLPRL
Trigger: CAGGCGGGGGAGATGGTCTGGCCAACTTGCTGCAGGAACTGGCCAGACAGCTAGAGAATGCTGACGGACGGGACCATGCCCGACTATACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 90 bp CTGAAGGTCTTGTGGGCAGGAGGACAAGCGTGTCCAACAGGGAAGTaGCAGCAGCCTCCGCGGCAGGTGCATCAGGCCAAAGTTTATCAG +
Preference number: 5 (lower is better)
Translates to: LKVLWAGGQACPTGK*QQPPRQVHQAKVYQ
Trigger: CTGATAAACTTTGGCCTGATGCACCTGCCGCGGAGGCTGCTGCCACTTCCCTGTTGGACACGCTTGTCCTCCTGCCCACAAGACCTTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096318.4
ENSMUST00000235542.2
ENSMUST00000235575.2
CDS GCA 90 bp CCATATGGACCACGGCAGGGCACACGGGCAGGACCTACCTTGGTCTaGTCGCTTAGCTTTTCACTCCTTAGGTCACTCAACAGGTCGCGA +
Preference number: 5 (lower is better)
Translates to: PYGPRQGTRAGPTLV*SLSFSLLRSLNRSR
Trigger: TCGCGACCTGTTGAGTGACCTAAGGAGTGAAAAGCTAAGCGAGCAGACCAAGGTAGGTCCTGCCCGTGTGCCCTGCCGTGGTCCATATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235542.2
CDS CCA 90 bp CCAGTGCAGGTGCAGCCAGTGAGGGGCCCAGCGCCATCCCCAACTTaGAACTTGACAGATGGGACAAGAGGACATAGTATAGTCGGGCAT +
Preference number: 5 (lower is better)
Translates to: PVQVQPVRGPAPSPT*NLTDGTRGHSIVGH
Trigger: ATGCCCGACTATACTATGTCCTCTTGTCCCATCTGTCAAGTTCCAAGTTGGGGATGGCGCTGGGCCCCTCACTGGCTGCACCTGCACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 90 bp GACAAGCGTGTCCAACAGGGAAGTGGCAGCAGCCTCCGCGGCAGGTaGATCAGGCCAAAGTTTATCAGAGTACTCCAAGCTCAGTGTCAG +
Preference number: 5 (lower is better)
Translates to: DKRVQQGSGSSLRGR*IRPKFIRVLQAQCQ
Trigger: CTGACACTGAGCTTGGAGTACTCTGATAAACTTTGGCCTGATGCACCTGCCGCGGAGGCTGCTGCCACTTCCCTGTTGGACACGCTTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096318.4
ENSMUST00000235542.2
ENSMUST00000235575.2
CDS CCA 90 bp AGGTCCACAAAGTGGGGTGCCAGGGAAGGCCGAGCTCGGTACAGTTaGGCCAGTCCGCGGATCAAAAATGTCTGTACTGTGGAGTGTCTA +
Preference number: 5 (lower is better)
Translates to: RSTKWGAREGRARYS*ASPRIKNVCTVECL
Trigger: TAGACACTCCACAGTACAGACATTTTTGATCCGCGGACTGGCCCAACTGTACCGAGCTCGGCCTTCCCTGGCACCCCACTTTGTGGACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 90 bp ACTGTGGAGTGTCTAGTCAGGCAGTTAGTAACAAGGTATGAGGCTTaGAAACAGAGAGTGGCCAAGGCCCGGGGACCACCATCCAGGGCT +
Preference number: 5 (lower is better)
Translates to: TVECLVRQLVTRYEA*KQRVAKARGPPSRA
Trigger: AGCCCTGGATGGTGGTCCCCGGGCCTTGGCCACTCTCTGTTTCCAAGCCTCATACCTTGTTACTAACTGCCTGACTAGACACTCCACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 90 bp TGTCTGTACTGTGGAGTGTCTAGTCAGGCAGTTAGTAACAAGGTATaGGGCTTGGAAACAGAGAGTGGCCAAGGCCCGGGGACCACCATC +
Preference number: 5 (lower is better)
Translates to: CLYCGVSSQAVSNKV*GLETESGQGPGTTI
Trigger: GATGGTGGTCCCCGGGCCTTGGCCACTCTCTGTTTCCAAGCCTCATACCTTGTTACTAACTGCCTGACTAGACACTCCACAGTACAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 90 bp CAAAGTTTATCAGAGTACTCCAAGCTCAGTGTCAGTAAGGAAACCTaGGATGGGGGATTTAAGAGGAACTCGTTGAGTTCAGCATGCGGT +
Preference number: 5 (lower is better)
Translates to: QSLSEYSKLSVSKET*DGGFKRNSLSSACG
Trigger: ACCGCATGCTGAACTCAACGAGTTCCTCTTAAATCCCCCATCTCAGGTTTCCTTACTGACACTGAGCTTGGAGTACTCTGATAAACTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235542.2
CDS CCA 72 bp CCTCACCTTCGGCACCTGCCAGAAAGGCGGATGGGCTaGCTCGGAAGGCCCCCAGGCGCTGGGCCCAGGCTT +
Preference number: 6 (lower is better)
Translates to: PHLRHLPERRMG*LGRPPGAGPRL
Trigger: AAGCCTGGGCCCAGCGCCTGGGGGCCTTCCGAGCCAGCCCATCCGCCTTTCTGGCAGGTGCCGAAGGTGAGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096318.4
ENSMUST00000235542.2
ENSMUST00000235575.2
CDS GCA 72 bp GCCAGAAGCAGGCTGACAGGCTGGATGGGACCTGTTTaGCCTGGGAGGCTCCGCAGCATCCCCAGGGCGCCG +
Preference number: 6 (lower is better)
Translates to: ARSRLTGWMGPV*PGRLRSIPRAP
Trigger: CGGCGCCCTGGGGATGCTGCGGAGCCTCCCAGGGCAAACAGGTCCCATCCAGCCTGTCAGCCTGCTTCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 72 bp AAGCAGGCTGACAGGCTGGATGGGACCTGTTTGCCCTaGGAGGCTCCGCAGCATCCCCAGGGCGCCGGCCAG +
Preference number: 6 (lower is better)
Translates to: KQADRLDGTCLP*EAPQHPQGAGQ
Trigger: CTGGCCGGCGCCCTGGGGATGCTGCGGAGCCTCCCAGGGCAAACAGGTCCCATCCAGCCTGTCAGCCTGCTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 72 bp CAAATCCTCACCTTCGGCACCTGCCAGAAAGGCGGATaGGCTGGCTCGGAAGGCCCCCAGGCGCTGGGCCCA +
Preference number: 6 (lower is better)
Translates to: QILTFGTCQKGG*AGSEGPQALGP
Trigger: TGGGCCCAGCGCCTGGGGGCCTTCCGAGCCAGCCCATCCGCCTTTCTGGCAGGTGCCGAAGGTGAGGATTTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096318.4
ENSMUST00000235542.2
ENSMUST00000235575.2
CDS CCA 72 bp CATCTGCAGGTGCCAGCAAAGGGCTTCGCTCTCGCCTaGCCTGGCCACCGCCTCTTGGAGCAGCACCTCCCT +
Preference number: 6 (lower is better)
Translates to: HLQVPAKGFALA*PGHRLLEQHLP
Trigger: AGGGAGGTGCTGCTCCAAGAGGCGGTGGCCAGGCCAGGCGAGAGCGAAGCCCTTTGCTGGCACCTGCAGATG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 72 bp GCTGTGCCGTGCCCAGCAGCCGAACCAGCTGTGGCTTaGAAAGCACTGGTGGCTGTCCCCGAAGACCCCGGA +
Preference number: 6 (lower is better)
Translates to: AVPCPAAEPAVA*KALVAVPEDPG
Trigger: TCCGGGGTCTTCGGGGACAGCCACCAGTGCTTTTCAAGCCACAGCTGGTTCGGCTGCTGGGCACGGCACAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 72 bp AGTTCACAGACAGGGGTGGCAGGCGGGCATGGCACGTaGGGCCAGCGGATGTGCTGTAAAGGGCCCGGACGT +
Preference number: 6 (lower is better)
Translates to: SSQTGVAGGHGT*GQRMCCKGPGR
Trigger: ACGTCCGGGCCCTTTACAGCACATCCGCTGGCCTCACGTGCCATGCCCGCCTGCCACCCCTGTCTGTGAACT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 72 bp CAACAGGTCGCGACCCAAATCCTCACCTTCGGCACCTaGCAGAAAGGCGGATGGGCTGGCTCGGAAGGCCCC +
Preference number: 6 (lower is better)
Translates to: QQVATQILTFGT*QKGGWAGSEGP
Trigger: GGGGCCTTCCGAGCCAGCCCATCCGCCTTTCTGGCAGGTGCCGAAGGTGAGGATTTGGGTCGCGACCTGTTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096318.4
ENSMUST00000235542.2
ENSMUST00000235575.2
CDS CCA 72 bp CCTGCACCTGCAGACACAGCACCGGGAGCGGGCCTTTaGCCTGCTGAGGCCCCACACTCAACTGAATTGGGG +
Preference number: 6 (lower is better)
Translates to: PAPADTAPGAGL*PAEAPHSTELG
Trigger: CCCCAATTCAGTTGAGTGTGGGGCCTCAGCAGGCCAAAGGCCCGCTCCCGGTGCTGTGTCTGCAGGTGCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CAA 90 bp GGCTGGGCATCGGGGCTGCAGAAGCAGGTACAGAGGATGCGCAGGTaGTCCCGGACGCAAGCAGGGTATGTGGACAGCCTCCAACGGCTC +
Preference number: 6 (lower is better)
Translates to: GWASGLQKQVQRMRR*SRTQAGYVDSLQRL
Trigger: GAGCCGTTGGAGGCTGTCCACATACCCTGCTTGCGTCCGGGACAACCTGCGCATCCTCTGTACCTGCTTCTGCAGCCCCGATGCCCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 72 bp TGGGCGAGGGTAAAGCTGGGTGCTGGGCTCCCAAGGTaGGCCTGCGGAGGAGCAGAGCTTCATCCTGTGCAG +
Preference number: 6 (lower is better)
Translates to: WARVKLGAGLPR*ACGGAELHPVQ
Trigger: CTGCACAGGATGAAGCTCTGCTCCTCCGCAGGCTCACCTTGGGAGCCCAGCACCCAGCTTTACCCTCGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 72 bp CTCCCAGTGGAGAAGTCCTCAGCCACCAGCAGGCCTTaGAGGCCAGCCCCAGACCTGGACTGTACCACCAAG +
Preference number: 6 (lower is better)
Translates to: LPVEKSSATSRP*RPAPDLDCTTK
Trigger: CTTGGTGGTACAGTCCAGGTCTGGGGCTGGCCTGCAAGGCCTGCTGGTGGCTGAGGACTTCTCCACTGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 72 bp GCTGGGCATCGGGGCTGCAGAAGCAGGTACAGAGGATaGGCAGGTTGTCCCGGACGCAAGCAGGGTATGTGG +
Preference number: 6 (lower is better)
Translates to: AGHRGCRSRYRG*AGCPGRKQGMW
Trigger: CCACATACCCTGCTTGCGTCCGGGACAACCTGCGCATCCTCTGTACCTGCTTCTGCAGCCCCGATGCCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CAA 90 bp CGTCCGTCAGCATTCTCTAGCTGTCTGGCCAGTTCCTGCAGCAAGTaGGCCAGACCATCTCCCCCGCCTGTCCGCAGCAGAGCACGGCAC +
Preference number: 6 (lower is better)
Translates to: RPSAFSSCLASSCSK*ARPSPPPVRSRARH
Trigger: GTGCCGTGCTCTGCTGCGGACAGGCGGGGGAGATGGTCTGGCCAACTTGCTGCAGGAACTGGCCAGACAGCTAGAGAATGCTGACGGACG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 72 bp CGCAGTAGGGCCTGGTGGAGGCCCCAGTCGGTGCAGTaGACAGCTGCAGCCTGTAGAAAGCTGAGTGTGGTA +
Preference number: 6 (lower is better)
Translates to: RSRAWWRPQSVQ*TAAACRKLSVV
Trigger: TACCACACTCAGCTTTCTACAGGCTGCAGCTGTGCACTGCACCGACTGGGGCCTCCACCAGGCCCTACTGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 72 bp TTGTGGGCAGGAGGACAAGCGTGTCCAACAGGGAAGTaGCAGCAGCCTCCGCGGCAGGTGCATCAGGCCAAA +
Preference number: 6 (lower is better)
Translates to: LWAGGQACPTGK*QQPPRQVHQAK
Trigger: TTTGGCCTGATGCACCTGCCGCGGAGGCTGCTGCCACTTCCCTGTTGGACACGCTTGTCCTCCTGCCCACAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096318.4
ENSMUST00000235542.2
ENSMUST00000235575.2
CDS CCA 72 bp TCGTGTAGAACAAGGGCCAGAAGCAGGCTGACAGGCTaGATGGGACCTGTTTGCCCTGGGAGGCTCCGCAGC +
Preference number: 6 (lower is better)
Translates to: SCRTRARSRLTG*MGPVCPGRLRS
Trigger: GCTGCGGAGCCTCCCAGGGCAAACAGGTCCCATCCAGCCTGTCAGCCTGCTTCTGGCCCTTGTTCTACACGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 72 bp TGTCAGCTGTGCCGTGCCCAGCAGCCGAACCAGCTGTaGCTTGAAAAGCACTGGTGGCTGTCCCCGAAGACC +
Preference number: 6 (lower is better)
Translates to: CQLCRAQQPNQL*LEKHWWLSPKT
Trigger: GGTCTTCGGGGACAGCCACCAGTGCTTTTCAAGCCACAGCTGGTTCGGCTGCTGGGCACGGCACAGCTGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 72 bp CAGACACAGCAAATGCAGGCGGGCCAGGAGAACCGTTaGGTCATGAAGGAGACTGGGCATGAGGCCCCGGCA +
Preference number: 6 (lower is better)
Translates to: QTQQMQAGQENR*VMKETGHEAPA
Trigger: TGCCGGGGCCTCATGCCCAGTCTCCTTCATGACCCAACGGTTCTCCTGGCCCGCCTGCATTTGCTGTGTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CAA 72 bp TCGGGGCTGCAGAAGCAGGTACAGAGGATGCGCAGGTaGTCCCGGACGCAAGCAGGGTATGTGGACAGCCTC +
Preference number: 6 (lower is better)
Translates to: SGLQKQVQRMRR*SRTQAGYVDSL
Trigger: GAGGCTGTCCACATACCCTGCTTGCGTCCGGGACAACCTGCGCATCCTCTGTACCTGCTTCTGCAGCCCCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CAA 90 bp CTGTCCCCGAAGACCCCGGAGGGCCCAGCCCAACAGCCACAGAAGTaGAGCCTGAGCCACAGGAGTGAGCAGATAGGAAGTGTCCAGAAG +
Preference number: 6 (lower is better)
Translates to: LSPKTPEGPAQQPQK*SLSHRSEQIGSVQK
Trigger: CTTCTGGACACTTCCTATCTGCTCACTCCTGTGGCTCAGGCTCAACTTCTGTGGCTGTTGGGCTGGGCCCTCCGGGGTCTTCGGGGACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 72 bp CCAAGGTGTCGTGTAGAACAAGGGCCAGAAGCAGGCTaGCAGGCTGGATGGGACCTGTTTGCCCTGGGAGGC +
Preference number: 6 (lower is better)
Translates to: PRCRVEQGPEAG*QAGWDLFALGG
Trigger: GCCTCCCAGGGCAAACAGGTCCCATCCAGCCTGTCAGCCTGCTTCTGGCCCTTGTTCTACACGACACCTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 72 bp CGTCCGTCAGCATTCTCTAGCTGTCTGGCCAGTTCCTaGAGCAAGTTGGCCAGACCATCTCCCCCGCCTGTC +
Preference number: 6 (lower is better)
Translates to: RPSAFSSCLASS*SKLARPSPPPV
Trigger: GACAGGCGGGGGAGATGGTCTGGCCAACTTGCTGCAGGAACTGGCCAGACAGCTAGAGAATGCTGACGGACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CAA 72 bp GCATTCTCTAGCTGTCTGGCCAGTTCCTGCAGCAAGTaGGCCAGACCATCTCCCCCGCCTGTCCGCAGCAGA +
Preference number: 6 (lower is better)
Translates to: AFSSCLASSCSK*ARPSPPPVRSR
Trigger: TCTGCTGCGGACAGGCGGGGGAGATGGTCTGGCCAACTTGCTGCAGGAACTGGCCAGACAGCTAGAGAATGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 72 bp AGTCGGTGCAGTGCACAGCTGCAGCCTGTAGAAAGCTaGGTGTGGTACTCTGAGTGGCCCCCTCTGCCACCT +
Preference number: 6 (lower is better)
Translates to: SRCSAQLQPVES*VWYSEWPPLPP
Trigger: AGGTGGCAGAGGGGGCCACTCAGAGTACCACACTCAGCTTTCTACAGGCTGCAGCTGTGCACTGCACCGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 72 bp CCAACAACAGGAGCCTCCGGAGAGCTGAAGGTCTTGTaGGCAGGAGGACAAGCGTGTCCAACAGGGAAGTGG +
Preference number: 6 (lower is better)
Translates to: PTTGASGELKVL*AGGQACPTGKW
Trigger: CCACTTCCCTGTTGGACACGCTTGTCCTCCTGCCCACAAGACCTTCAGCTCTCCGGAGGCTCCTGTTGTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096318.4
ENSMUST00000235542.2
ENSMUST00000235575.2
CDS CAA 90 bp CAGGTGCAGCCAGTGAGGGGCCCAGCGCCATCCCCAACTTGGAACTaGACAGATGGGACAAGAGGACATAGTATAGTCGGGCATGGTCCC +
Preference number: 6 (lower is better)
Translates to: QVQPVRGPAPSPTWN*TDGTRGHSIVGHGP
Trigger: GGGACCATGCCCGACTATACTATGTCCTCTTGTCCCATCTGTCAAGTTCCAAGTTGGGGATGGCGCTGGGCCCCTCACTGGCTGCACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CAA 90 bp GGCCCTGCTGCCCAAGTGGACACCACACACGGCTCTCTACGCCCTTaGGTAGGCAGGAGTTCCAGAGCTCATCGAAGAAACGCAACTCAG +
Preference number: 6 (lower is better)
Translates to: GPAAQVDTTHGSLRP*VGRSSRAHRRNATQ
Trigger: CTGAGTTGCGTTTCTTCGATGAGCTCTGGAACTCCTGCCTACCAAAGGGCGTAGAGAGCCGTGTGTGGTGTCCACTTGGGCAGCAGGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 72 bp ACCTCCCTGAGGGGCTCTCTCAGCTCAGGGCTTACCTaGTCTAAGAGGTCCACAAAGTGGGGTGCCAGGGAA +
Preference number: 6 (lower is better)
Translates to: TSLRGSLSSGLT*SKRSTKWGARE
Trigger: TTCCCTGGCACCCCACTTTGTGGACCTCTTAGATCAGGTAAGCCCTGAGCTGAGAGAGCCCCTCAGGGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 72 bp AAGTGGGGTGCCAGGGAAGGCCGAGCTCGGTACAGTTaGGCCAGTCCGCGGATCAAAAATGTCTGTACTGTG +
Preference number: 6 (lower is better)
Translates to: KWGAREGRARYS*ASPRIKNVCTV
Trigger: CACAGTACAGACATTTTTGATCCGCGGACTGGCCCAACTGTACCGAGCTCGGCCTTCCCTGGCACCCCACTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CAA 72 bp CCAGTGAGGGGCCCAGCGCCATCCCCAACTTGGAACTaGACAGATGGGACAAGAGGACATAGTATAGTCGGG +
Preference number: 6 (lower is better)
Translates to: PVRGPAPSPTWN*TDGTRGHSIVG
Trigger: CCCGACTATACTATGTCCTCTTGTCCCATCTGTCAAGTTCCAAGTTGGGGATGGCGCTGGGCCCCTCACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CAA 72 bp GCCCAAGTGGACACCACACACGGCTCTCTACGCCCTTaGGTAGGCAGGAGTTCCAGAGCTCATCGAAGAAAC +
Preference number: 6 (lower is better)
Translates to: AQVDTTHGSLRP*VGRSSRAHRRN
Trigger: GTTTCTTCGATGAGCTCTGGAACTCCTGCCTACCAAAGGGCGTAGAGAGCCGTGTGTGGTGTCCACTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 72 bp CTGGACCTAGTGGGCAATTCTCGGGGAAGCTCAGGATaGAATGCAGGTAAAAGAGGTGTGTGGGCGAGGGTA +
Preference number: 6 (lower is better)
Translates to: LDLVGNSRGSSG*NAGKRGVWARV
Trigger: TACCCTCGCCCACACACCTCTTTTACCTGCATTGCATCCTGAGCTTCCCCGAGAATTGCCCACTAGGTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 72 bp AGTTCTCCAAGGCATTCACAGGCTGTGGCCTGTAGATaGCGCTGTTCTGAAGGGGTTCCAAAGCTTCGTCCC +
Preference number: 6 (lower is better)
Translates to: SSPRHSQAVACR*RCSEGVPKLRP
Trigger: GGGACGAAGCTTTGGAACCCCTTCAGAACAGCGCCATCTACAGGCCACAGCCTGTGAATGCCTTGGAGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096318.4
ENSMUST00000235542.2
ENSMUST00000235575.2
CDS CCA 72 bp GTGCAGCCAGTGAGGGGCCCAGCGCCATCCCCAACTTaGAACTTGACAGATGGGACAAGAGGACATAGTATA +
Preference number: 6 (lower is better)
Translates to: VQPVRGPAPSPT*NLTDGTRGHSI
Trigger: TATACTATGTCCTCTTGTCCCATCTGTCAAGTTCCAAGTTGGGGATGGCGCTGGGCCCCTCACTGGCTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS TCA 72 bp TGTGGAGTGTCTAGTCAGGCAGTTAGTAACAAGGTATaGGGCTTGGAAACAGAGAGTGGCCAAGGCCCGGGG +
Preference number: 6 (lower is better)
Translates to: CGVSSQAVSNKV*GLETESGQGPG
Trigger: CCCCGGGCCTTGGCCACTCTCTGTTTCCAAGCCTCATACCTTGTTACTAACTGCCTGACTAGACACTCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS CCA 72 bp TGTCTAGTCAGGCAGTTAGTAACAAGGTATGAGGCTTaGAAACAGAGAGTGGCCAAGGCCCGGGGACCACCA +
Preference number: 6 (lower is better)
Translates to: CLVRQLVTRYEA*KQRVAKARGPP
Trigger: TGGTGGTCCCCGGGCCTTGGCCACTCTCTGTTTCCAAGCCTCATACCTTGTTACTAACTGCCTGACTAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096318.4
ENSMUST00000235575.2
CDS GCA 72 bp GATGGGGGATTTAAGAGGAACTCGTTGAGTTCAGCATaGGGTAGTATGAAGCAACCATATGGACCACGGCAG +
Preference number: 6 (lower is better)
Translates to: DGGFKRNSLSSA*GSMKQPYGPRQ
Trigger: CTGCCGTGGTCCATATGGTTGCTTCATACTACCGCATGCTGAACTCAACGAGTTCCTCTTAAATCCCCCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235542.2
CDS TCA 72 bp TCAGAGTACTCCAAGCTCAGTGTCAGTAAGGAAACCTaGGATGGGGGATTTAAGAGGAACTCGTTGAGTTCA +
Preference number: 6 (lower is better)
Translates to: SEYSKLSVSKET*DGGFKRNSLSS
Trigger: TGAACTCAACGAGTTCCTCTTAAATCCCCCATCTCAGGTTTCCTTACTGACACTGAGCTTGGAGTACTCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235542.2