Pregenerated sensors for AP4S1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020955

Ensembl transcript IDs: ENSMUST00000021338.10, ENSMUST00000218820.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	TCAAGTCAATTTGAAGTTTATTGGCTGATGGACAACTGCCATGCTTaGATCACACTGCAACCCTGCAGTACCTATAGAAGGAAAAGCAAG	+
Preference number: 1 (lower is better) Translates to: SSQFEVYWLMDNCHA*ITLQPCSTYRRKSK Trigger: CTTGCTTTTCCTTCTATAGGTACTGCAGGGTTGCAGTGTGATGCAAGCATGGCAGTTGTCCATCAGCCAATAAACTTCAAATTGACTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021338.10
3UTR GCA 72 bp	TTTGAAGTTTATTGGCTGATGGACAACTGCCATGCTTaGATCACACTGCAACCCTGCAGTACCTATAGAAGG	+
Preference number: 3 (lower is better) Translates to: FEVYWLMDNCHA*ITLQPCSTYRR Trigger: CCTTCTATAGGTACTGCAGGGTTGCAGTGTGATGCAAGCATGGCAGTTGTCCATCAGCCAATAAACTTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021338.10
3UTR GCA 72 bp	TCAAGTCAATTTGAAGTTTATTGGCTGATGGACAACTaGCATGCTTGCATCACACTGCAACCCTGCAGTACC	+
Preference number: 3 (lower is better) Translates to: SSQFEVYWLMDN*HACITLQPCST Trigger: GGTACTGCAGGGTTGCAGTGTGATGCAAGCATGGCAGTTGTCCATCAGCCAATAAACTTCAAATTGACTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021338.10
CDS-3UTR GCA 90 bp	GCCATGCTTGCATCACACTGCAACCCTGCAGTACCTATAGAAGGAAAAGCAAGCCACAACAAAGAGAGCTaGATATTGCCGGTAGATCAG	+
Preference number: 4 (lower is better) Translates to: AMLASHCNPAVPIEGKASHNKES*ILPVDQ Trigger: CTGATCTACCGGCAATATGCAGCTCTCTTTGTTGTG...GCTTGCTTTTCCTTCTATAGGTACTGCAGGGTTGCAGTGTGATGCAAGCATGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021338.10
CDS-3UTR TCA 90 bp	GCATCACACTGCAACCCTGCAGTACCTATAGAAGGAAAAGCAAGCTTACAGTTAAATCCTTGTATTCAATaGATGAGCATTGTTCGCTGG	+
Preference number: 4 (lower is better) Translates to: ASHCNPAVPIEGKASLQLNPCIQ*MSIVRW Trigger: CCAGCGAACAATGCTCATTCATTGAATACAAGGATT...TAACTGTAAGCTTGCTTTTCCTTCTATAGGTACTGCAGGGTTGCAGTGTGATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021338.10
CDS-3UTR CAA 90 bp	ATGCTTGCATCACACTGCAACCCTGCAGTACCTATAGAAGGAAAAGCAAGCTTACAGCTTTCCGACAGCTaGTCAAGAATCAGCAGAGGG	+
Preference number: 5 (lower is better) Translates to: MLASHCNPAVPIEGKASLQLSDS*SRISRG Trigger: CCCTCTGCTGATTCTTGACAAGCTGTCGGAAAGCTG...TAAGCTTGCTTTTCCTTCTATAGGTACTGCAGGGTTGCAGTGTGATGCAAGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021338.10
CDS-3UTR CAA 90 bp	GGCTCTCTGTTAAGAGAAAAATGTGTACACAAGAATTGTTTTCTCTTTAGGAACCAGTCGGGTCTGCCCTaGCTTGTTCACCATAAGGAA	+
Preference number: 5 (lower is better) Translates to: GSLLREKCVHKNCFLFRNQSGLP*LVHHKE Trigger: TTCCTTATGGTGAACAAGCAAGGGCAGACCCGACTG...GTTCCTAAAGAGAAAACAATTCTTGTGTACACATTTTTCTCTTAACAGAGAGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021338.10
CDS-3UTR CAA 90 bp	CACTGCAACCCTGCAGTACCTATAGAAGGAAAAGCAAGCTTACAGTTACCAAGTAAAGAGAGCTGCATATaGCCGGTAGATCAGTTTAAA	+
Preference number: 5 (lower is better) Translates to: HCNPAVPIEGKASLQLPSKESCI*PVDQFK Trigger: TTTAAACTGATCTACCGGCAATATGCAGCTCTCTTT...ACTTGGTAACTGTAAGCTTGCTTTTCCTTCTATAGGTACTGCAGGGTTGCAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021338.10
CDS CAA 72 bp	AATGAGCATTGTTCGCTGGACCGAGACAGGCAACTCTaGCTGACCTCAGTCTCCAGAAGCGCACGTTTATTA	+
Preference number: 6 (lower is better) Translates to: NEHCSLDRDRQL*LTSVSRSARLL Trigger: TAATAAACGTGCGCTTCTGGAGACTGAGGTCAGCAAGAGTTGCCTGTCTCGGTCCAGCGAACAATGCTCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021338.10 ENSMUST00000218820.2
CDS CAA 90 bp	TATTCAATGAATGAGCATTGTTCGCTGGACCGAGACAGGCAACTCTaGCTGACCTCAGTCTCCAGAAGCGCACGTTTATTAATGTCCACA	+
Preference number: 6 (lower is better) Translates to: YSMNEHCSLDRDRQL*LTSVSRSARLLMST Trigger: TGTGGACATTAATAAACGTGCGCTTCTGGAGACTGAGGTCAGCAAGAGTTGCCTGTCTCGGTCCAGCGAACAATGCTCATTCATTGAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021338.10 ENSMUST00000218820.2

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