RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AP4M1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019518

Ensembl transcript IDs: ENSMUST00000019662.11, ENSMUST00000143241.8, ENSMUST00000151318.8

Found 184 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGCTGGTCTCCACTaGTACCACTGCACCCCCAAGCACAGCCCCTGCTGGTTCTGGCAG +
Preference number: 1 (lower is better)
Translates to: HHGSQRAAHRQAGLH*YHCTPKHSPCWFWQ
Trigger: CTGCCAGAACCAGCAGGGGCTGTGCTTGGGGGTGCAGTGGTAGCAGTGGAGACCAGCTTGACGATGGGCTGCACGCTGGGAACCGTGGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 90 bp GGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTaGCTCCATTGCCTTGCCTGTTCAGACACTGGTGTCTGCGAGAGC +
Preference number: 1 (lower is better)
Translates to: GPSARPSHAWLIEGP*LHCLACSDTGVCES
Trigger: GCTCTCGCAGACACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 90 bp GCCAGGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTGGCTCCATTaGCTTGCCTGTTCAGACACTGGTGTCTGCGAGAGCTGCTGCTCC +
Preference number: 1 (lower is better)
Translates to: ARPSHAWLIEGPWLH*LACSDTGVCESCCS
Trigger: GGAGCAGCAGCTCTCGCAGACACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR TCA 90 bp CCCTTTCACAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATTaGAGGTCCCTGGCTCCATTGCCTTGCCTGTTCAGACACTGGTGT +
Preference number: 1 (lower is better)
Translates to: PFHRPLSQALARLAY*RSLAPLPCLFRHWC
Trigger: ACACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCCTGTGAAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 90 bp TCCCAGCGTGCAGCCCATCGTCAAGCTGGTCTCCACTGCTACCACTaGACCCCCAAGCACAGCCCCTGCTGGTTCTGGCAGTGTTCAGAA +
Preference number: 1 (lower is better)
Translates to: SQRAAHRQAGLHCYH*TPKHSPCWFWQCSE
Trigger: TTCTGAACACTGCCAGAACCAGCAGGGGCTGTGCTTGGGGGTGCAGTGGTAGCAGTGGAGACCAGCTTGACGATGGGCTGCACGCTGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 90 bp CAGGCTCTACTACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTaGAGCCCATCGTCAAGCTGGTCTCCACTGCTACCACTGCACCCC +
Preference number: 1 (lower is better)
Translates to: QALLLPLLSPPRFPA*SPSSSWSPLLPLHP
Trigger: GGGGTGCAGTGGTAGCAGTGGAGACCAGCTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGTAGTAGAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 90 bp GGCTCTGGTCAGAACGACTGGACAGGACAGGGCGGCTGGCTGCGCTaGTTGGGGCCACTTTATTCTGCTGTGTCTCTGCCCCGAACAATC +
Preference number: 1 (lower is better)
Translates to: GSGQNDWTGQGGWLR*LGPLYSAVSLPRTI
Trigger: GATTGTTCGGGGCAGAGACACAGCAGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCCGCCCTGTCCTGTCCAGTCGTTCTGACCAGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CCA 90 bp CACACTGACCCTTTCACAGGCCCCTCAGCCAGGCCCTCGCACGCCTaGCTTATTGAAGGTCCCTGGCTCCATTGCCTTGCCTGTTCAGAC +
Preference number: 1 (lower is better)
Translates to: HTDPFTGPSARPSHA*LIEGPWLHCLACSD
Trigger: GTCTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCCTGTGAAAGGGTCAGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR TCA 90 bp GGGGAGAATTTGGGTCCCTTGGGCCCCTTCTCTGTTCCCATGTGGTaGAGGCCAGGGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACA +
Preference number: 1 (lower is better)
Translates to: GENLGPLGPFSVPMW*RPGPRLLYKLSRST
Trigger: TGTTGACCTGCTGAGCTTGTAGAGCAGCCTGGGCCCTGGCCTTCACCACATGGGAACAGAGAAGGGGCCCAAGGGACCCAAATTCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 90 bp TGGGCCCCTTCTCTGTTCCCATGTGGTGAAGGCCAGGGCCCAGGCTaGTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATCAC +
Preference number: 1 (lower is better)
Translates to: WAPSLFPCGEGQGPG*STSSAGQQDHTHHH
Trigger: GTGATGGTGAGTGTGGTCCTGTTGACCTGCTGAGCTTGTAGAGCAGCCTGGGCCCTGGCCTTCACCACATGGGAACAGAGAAGGGGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 90 bp CTGGTCAGAACGACTGGACAGGACAGGGCGGCTGGCTGCGCTGCTTaGGGCCACTTTATTCTGCTGTGTCTCTGCCCCGAACAATCCAAC +
Preference number: 1 (lower is better)
Translates to: LVRTTGQDRAAGCAA*GHFILLCLCPEQSN
Trigger: GTTGGATTGTTCGGGGCAGAGACACAGCAGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCCGCCCTGTCCTGTCCAGTCGTTCTGACCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR TCA 90 bp ACATTTTCTTCCTGTGTCTGTTCTCTTCATAGCCTCGGCCCACACTaGCCCTTTCACAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCT +
Preference number: 1 (lower is better)
Translates to: TFSSCVCSLHSLGPH*PFHRPLSQALARLA
Trigger: AGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCCTGTGAAAGGGTCAGTGTGGGCCGAGGCTATGAAGAGAACAGACACAGGAAGAAAATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR TCA 90 bp GCCTTGGTCCCACTGCACAGAGGGAAAGAGCCGGAAGGGGAGTGGTaGGGGGAGGTCATCAGAGAGCTGGTATCTCATCACAGTCAGCTC +
Preference number: 1 (lower is better)
Translates to: ALVPLHRGKEPEGEW*GEVIRELVSHHSQL
Trigger: GAGCTGACTGTGATGAGATACCAGCTCTCTGATGACCTCCCCTCACCACTCCCCTTCCGGCTCTTTCCCTCTGTGCAGTGGGACCAAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 90 bp GACAGGACAGGGCGGCTGGCTGCGCTGCTTGGGGCCACTTTATTCTaGTGTGTCTCTGCCCCGAACAATCCAACACTGCTGAGGTCAAAG +
Preference number: 1 (lower is better)
Translates to: DRTGRLAALLGATLF*CVSAPNNPTLLRSK
Trigger: CTTTGACCTCAGCAGTGTTGGATTGTTCGGGGCAGAGACACAGCAGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCCGCCCTGTCCTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 90 bp CTAAAGGACAGTCTGAGGAATCGAACCTGGAGACCGGAGCATGTGTaGCGAGGGAGTTCAAAGGAGAGGCTGGCAGGACCCAGCCCCAAG +
Preference number: 1 (lower is better)
Translates to: LKDSLRNRTWRPEHV*RGSSKERLAGPSPK
Trigger: CTTGGGGCTGGGTCCTGCCAGCCTCTCCTTTGAACTCCCTCGGCACACATGCTCCGGTCTCCAGGTTCGATTCCTCAGACTGTCCTTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CCA 90 bp ACCCTCCTTTCTCGCTCAGGTTCTGTCCCTCAGCACCTCAGCTCCTaGCTCAGGCTCTACTACTACCTCTCCTGTCACCACCACGGTTCC +
Preference number: 1 (lower is better)
Translates to: TLLSRSGSVPQHLSS*LRLYYYLSCHHHGS
Trigger: GGAACCGTGGTGGTGACAGGAGAGGTAGTAGTAGAGCCTGAGCCAGGAGCTGAGGTGCTGAGGGACAGAACCTGAGCGAGAAAGGAGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 90 bp GCTGGTCTCCACTGCTACCACTGCACCCCCAAGCACAGCCCCTGCTaGTTCTGGCAGTGTTCAGAAATACATTGTGGTCTCTCTTCCCCC +
Preference number: 1 (lower is better)
Translates to: AGLHCYHCTPKHSPC*FWQCSEIHCGLSSP
Trigger: GGGGGAAGAGAGACCACAATGTATTTCTGAACACTGCCAGAACCAGCAGGGGCTGTGCTTGGGGGTGCAGTGGTAGCAGTGGAGACCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR TCA 90 bp AATGGCTCGCAGCCTACTGGACCTGGCTCTCCCCAGCCTGCTCTGTaGTGTGTCACATGTGCTGACCTCCTCTCTTGTGCAGATTCCTAC +
Preference number: 1 (lower is better)
Translates to: NGSQPTGPGSPQPAL*CVTCADLLSCADSY
Trigger: GTAGGAATCTGCACAAGAGAGGAGGTCAGCACATGTGACACATCACAGAGCAGGCTGGGGAGAGCCAGGTCCAGTAGGCTGCGAGCCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 90 bp CAAGCTGGTCTCCACTGCTACCACTGCACCCCCAAGCACAGCCCCTaGTGGTTCTGGCAGTGTTCAGAAATACATTGTGGTCTCTCTTCC +
Preference number: 1 (lower is better)
Translates to: QAGLHCYHCTPKHSP*WFWQCSEIHCGLSS
Trigger: GGAAGAGAGACCACAATGTATTTCTGAACACTGCCAGAACCAGCAGGGGCTGTGCTTGGGGGTGCAGTGGTAGCAGTGGAGACCAGCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 90 bp TTGGCATTACCACAGGCACTAAAGGACAGTCTGAGGAATCGAACCTaGAGACCGGAGCATGTGTGCCGAGGGAGTTCAAAGGAGAGGCTG +
Preference number: 1 (lower is better)
Translates to: LALPQALKDSLRNRT*RPEHVCRGSSKERL
Trigger: CAGCCTCTCCTTTGAACTCCCTCGGCACACATGCTCCGGTCTCCAGGTTCGATTCCTCAGACTGTCCTTTAGTGCCTGTGGTAATGCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR TCA 90 bp TGGACCTGGCTCTCCCCAGCCTGCTCTGTGATGTGTCACATGTGCTaGCCTCCTCTCTTGTGCAGATTCCTACACACTCAAACAACCTGT +
Preference number: 1 (lower is better)
Translates to: WTWLSPACSVMCHMC*PPLLCRFLHTQTTC
Trigger: ACAGGTTGTTTGAGTGTGTAGGAATCTGCACAAGAGAGGAGGTCAGCACATGTGACACATCACAGAGCAGGCTGGGGAGAGCCAGGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR TCA 90 bp CTGTCAAGCCAATGCATATCTCAGAACCGCTGGGAAGGAAGCTCTTaGGCCGTATCTCTCCTTGGACGTCCACCTTCAACAACGAGCCAT +
Preference number: 1 (lower is better)
Translates to: LSSQCISQNRWEGSS*AVSLLGRPPSTTSH
Trigger: ATGGCTCGTTGTTGAAGGTGGACGTCCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCAGCGGTTCTGAGATATGCATTGGCTTGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR TCA 90 bp GTGGCTGCAGGCGGAGGATCCGATGAGACTCAAACTCATCTAGATTaGCAGAACTATGGAATGACACCTCATCAACTCGAATCCCTGGCC +
Preference number: 1 (lower is better)
Translates to: VAAGGGSDETQTHLD*QNYGMTPHQLESLA
Trigger: GGCCAGGGATTCGAGTTGATGAGGTGTCATTCCATAGTTCTGTCAATCTAGATGAGTTTGAGTCTCATCGGATCCTCCGCCTGCAGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CCA 90 bp AGTCTTGACCATCCATTCACTGGGGACTACAAGGGAAGGTGGGAGTaGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGG +
Preference number: 1 (lower is better)
Translates to: SLDHPFTGDYKGRWE*RACVNSRYLEKDSG
Trigger: CCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCACCTTCCCTTGTAGTCCCCAGTGAATGGATGGTCAAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 90 bp CAGAGGCCATTGCTTTTCACTGTGACTTCTAACAGTAACACTGGATaGGCTCCTCTCATCTTTGTGGGAGGATACCAGCCCTTACTCTGC +
Preference number: 1 (lower is better)
Translates to: QRPLLFTVTSNSNTG*APLIFVGGYQPLLC
Trigger: GCAGAGTAAGGGCTGGTATCCTCCCACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAGCAATGGCCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 90 bp ATCTCAGAACCGCTGGGAAGGAAGCTCTTGAGCCGTATCTCTCCTTaGACGTCCACCTTCAACAACGAGCCATTAGATGCAATCAGTACA +
Preference number: 1 (lower is better)
Translates to: ISEPLGRKLLSRISP*TSTFNNEPLDAIST
Trigger: TGTACTGATTGCATCTAATGGCTCGTTGTTGAAGGTGGACGTCCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCAGCGGTTCTGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR TCA 90 bp TGCTTCAGCTCAAGTGCTGTGTCCAGAGGCCATTGCTTTTCACTGTaGCTTCTAACAGTAACACTGGATGGGCTCCTCTCATCTTTGTGG +
Preference number: 1 (lower is better)
Translates to: CFSSSAVSRGHCFSL*LLTVTLDGLLSSLW
Trigger: CCACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAGCAATGGCCTCTGGACACAGCACTTGAGCTGAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 90 bp CCGTATCTCTCCTTGGACGTCCACCTTCAACAACGAGCCATTAGATaGAATCAGTACAGACAGTCTCTCCACCACATCCAAAAACACCTC +
Preference number: 1 (lower is better)
Translates to: PYLSLDVHLQQRAIR*NQYRQSLHHIQKHL
Trigger: GAGGTGTTTTTGGATGTGGTGGAGAGACTGTCTGTACTGATTGCATCTAATGGCTCGTTGTTGAAGGTGGACGTCCAAGGAGAGATACGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 90 bp CCATATCCTTGCTTGGGGAGCTTCAAATCCGAATTACGTAGGCGTTaGTGTGGCTTAGATGTCGAACCCACTTGTGAGGATTGGCATTAC +
Preference number: 1 (lower is better)
Translates to: PYPCLGSFKSELRRR*CGLDVEPTCEDWHY
Trigger: GTAATGCCAATCCTCACAAGTGGGTTCGACATCTAAGCCACAGCAACGCCTACGTAATTCGGATTTGAAGCTCCCCAAGCAAGGATATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 90 bp GTCCAGGTCCAAAGCCACAAAGAAAATGTCCTCTTCCTGTTCAACTaGCTGCTCACATTGCTGTCCATATCCTTGCTTGGGGAGCTTCAA +
Preference number: 1 (lower is better)
Translates to: VQVQSHKENVLFLFN*LLTLLSISLLGELQ
Trigger: TTGAAGCTCCCCAAGCAAGGATATGGACAGCAATGTGAGCAGGCAGTTGAACAGGAAGAGGACATTTTCTTTGTGGCTTTGGACCTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 90 bp GTGATGCCCCTGGGGAAACCTCCAAGCTGTAACCTAATCCCTTCATaGTCAAACTCGGACAGCATAAGAGCTACTTCTCAGTATCTTAGA +
Preference number: 1 (lower is better)
Translates to: VMPLGKPPSCNLIPS*SNSDSIRATSQYLR
Trigger: TCTAAGATACTGAGAAGTAGCTCTTATGCTGTCCGAGTTTGAGCATGAAGGGATTAGGTTACAGCTTGGAGGTTTCCCCAGGGGCATCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp AAGGCCGGAGAGTTGAGAGCCTCCTTGTACCCGGGGCAGATCCCAGTGAAGGGCCAGCTCGCCCTGAGGTaGCTGCAGGCGGAGGATCCG +
Preference number: 2 (lower is better)
Translates to: KAGELRASLYPGQIPVKGQLALR*LQAEDP
Trigger: CGGATCCTCCGCCTGCAGCCACCTCAGGGCGAGCTG...GCCCTTCACTGGGATCTGCCCCGGGTACAAGGAGGCTCTCAACTCTCCGGCCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR TCA 90 bp GGACATCCATCTGGAAAAGGCCGGAGAGTTGAGAGCCTCCTTGTACCCGGGGCAACAGTCAGCTCGCCCTaGGGTGGCTGCAGGCGGAGG +
Preference number: 2 (lower is better)
Translates to: GHPSGKGRRVESLLVPGATVSSP*GGCRRR
Trigger: CCTCCGCCTGCAGCCACCTCAGGGCGAGCTGACTGT...TGCCCCGGGTACAAGGAGGCTCTCAACTCTCCGGCCTTTTCCAGATGGATGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CAA 90 bp GGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTGGCTCCATTGCCTaGCCTGTTCAGACACTGGTGTCTGCGAGAGCTGCTGCTCCTCCT +
Preference number: 2 (lower is better)
Translates to: GPRTPGLLKVPGSIA*PVQTLVSARAAAPP
Trigger: AGGAGGAGCAGCAGCTCTCGCAGACACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 90 bp ACCCTTTCACAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATaGAAGGTCCCTGGCTCCATTGCCTTGCCTGTTCAGACACTGGTG +
Preference number: 2 (lower is better)
Translates to: TLSQAPQPGPRTPGL*KVPGSIALPVQTLV
Trigger: CACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCCTGTGAAAGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 90 bp AAGTCCCTGCAAGCCAGGGACATCCATCTGGAAAAGGCCGGAGAGTaGAGAGCCTCCTTGTACCCGGGGCAGATCCCAGTGAAGGGCTCC +
Preference number: 2 (lower is better)
Translates to: KSLQARDIHLEKAGE*RASLYPGQIPVKGS
Trigger: GGAGCCCTTCACTGGGATCTGCCCCGGGTACAAGGAGGCTCTCAACTCTCCGGCCTTTTCCAGATGGATGTCCCTGGCTTGCAGGGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR GCA 90 bp TCAGGATGCCTACCGGGGAGAATTTGGGTCCCTTGGGCCCCTTCTCTGTTCCCAGTCTGCGAGAGCTGCTaGTCCTCCTCAGCCTTCTCC +
Preference number: 2 (lower is better)
Translates to: SGCLPGRIWVPWAPSLFPVCESC*SSSAFS
Trigger: GGAGAAGGCTGAGGAGGAGCAGCAGCTCTCGCAGAC...TGGGAACAGAGAAGGGGCCCAAGGGACCCAAATTCTCCCCGGTAGGCATCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp GGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATCACGCAGTCTCAGGGAGCTaGACCTCTCCCACGCCCAAT +
Preference number: 2 (lower is better)
Translates to: GPGCSTSSAGQQDHTHHHAVSGS*TSPTPN
Trigger: ATTGGGCGTGGGAGAGGTCCAGCTCCCTGAGACTGC...GTGATGGTGAGTGTGGTCCTGTTGACCTGCTGAGCTTGTAGAGCAGCCTGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 90 bp TCTGGTCAGAACGACTGGACAGGACAGGGCGGCTGGCTGCGCTGCTaGGGGCCACTTTATTCTGCTGTGTCTCTGCCCCGAACAATCCAA +
Preference number: 2 (lower is better)
Translates to: SGQNDWTGQGGWLRC*GPLYSAVSLPRTIQ
Trigger: TTGGATTGTTCGGGGCAGAGACACAGCAGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCCGCCCTGTCCTGTCCAGTCGTTCTGACCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR GCA 90 bp GCCCCAAGGGAGAAGGTCCATGGTTGGGAAGTCCCTGCAAGCCAGGGACATCCAGGGGCCACTTTATTCTaGTGTGTCTCTGCCCCGAAC +
Preference number: 2 (lower is better)
Translates to: APREKVHGWEVPASQGHPGATLF*CVSAPN
Trigger: GTTCGGGGCAGAGACACAGCAGAATAAAGTGGCCCC...TGGATGTCCCTGGCTTGCAGGGACTTCCCAACCATGGACCTTCTCCCTTGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR TCA 90 bp GCCCCAAGGGAGAAGGTCCATGGTTGGGAAGTCCCTGCAAGCCAGGGACATCCAAGGGGAAGGTGCAGATaGATGTTGAGAGCTTGGCTC +
Preference number: 2 (lower is better)
Translates to: APREKVHGWEVPASQGHPRGRCR*MLRAWL
Trigger: GAGCCAAGCTCTCAACATTCATCTGCACCTTCCCCT...TGGATGTCCCTGGCTTGCAGGGACTTCCCAACCATGGACCTTCTCCCTTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR CCA 90 bp AAGCAAGGACAACATGACCCTAGACCCTCCTTTCTCGCTCAGGTTCTGTCCCTCGCAGCCTACTGGACCTaGCTCTCCCCAGCCTGCTCT +
Preference number: 2 (lower is better)
Translates to: KQGQHDPRPSFLAQVLSLAAYWT*LSPACS
Trigger: AGAGCAGGCTGGGGAGAGCCAGGTCCAGTAGGCTGC...GAGGGACAGAACCTGAGCGAGAAAGGAGGGTCTAGGGTCATGTTGTCCTTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR TCA 90 bp GGACATCCATCTGGAAAAGGCCGGAGAGTTGAGAGCCTCCTTGTACCCGGGGCATGGGAAGGAAGCTCTTaGGCCGTATCTCTCCTTGGA +
Preference number: 2 (lower is better)
Translates to: GHPSGKGRRVESLLVPGAWEGSS*AVSLLG
Trigger: TCCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCA...TGCCCCGGGTACAAGGAGGCTCTCAACTCTCCGGCCTTTTCCAGATGGATGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR TCA 90 bp CCACTTGTGAGGATTGGCATTACCACAGGCACTAAAGGACAGTCTGAGGAATCGAACCTGGAGCCGGCCTaGGCCTTGGTCCCACTGCAC +
Preference number: 2 (lower is better)
Translates to: PLVRIGITTGTKGQSEESNLEPA*ALVPLH
Trigger: GTGCAGTGGGACCAAGGCTCAGGCCGGCTCCAGGTT...CGATTCCTCAGACTGTCCTTTAGTGCCTGTGGTAATGCCAATCCTCACAAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR GCA 90 bp TTTGTGGGAGGATACCAGCCCTTACTCTGCCTTCTCTACAGAAACACTGTGCCCCCACGGTTCCCAGCGTaGAGCCCATCGTCAAGCTGG +
Preference number: 2 (lower is better)
Translates to: FVGGYQPLLCLLYRNTVPPRFPA*SPSSSW
Trigger: CCAGCTTGACGATGGGCTGCACGCTGGGAACCGTGG...GGGCACAGTGTTTCTGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR TCA 90 bp ATCTTCCAGTGCCTCATCAACCCAGCAGGTATGTGGAGCCAGGGTGAGGGGTGTCACTCAAACAACCTGTaGGGGAGGAAGGAGGAAAGG +
Preference number: 2 (lower is better)
Translates to: IFQCLINPAGMWSQGEGCHSNNL*GRKEER
Trigger: CCTTTCCTCCTTCCTCCCTCACAGGTTGTTTGAGTG...ACACCCCTCACCCTGGCTCCACATACCTGCTGGGTTGATGAGGCACTGGAAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp CAGGGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATCTTATTGAAGGTCCCTaGCTCCATTGCCTTGCCTGT +
Preference number: 2 (lower is better)
Translates to: QGPGCSTSSAGQQDHTHHLIEGP*LHCLAC
Trigger: ACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAG...ATGGTGAGTGTGGTCCTGTTGACCTGCTGAGCTTGTAGAGCAGCCTGGGCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR GCA 90 bp TTTGTGGGAGGATACCAGCCCTTACTCTGCCTTCTCTACAGAAACACTGTGCCCCCCAAGCACAGCCCCTaGTGGTTCTGGCAGTGTTCA +
Preference number: 2 (lower is better)
Translates to: FVGGYQPLLCLLYRNTVPPKHSP*WFWQCS
Trigger: TGAACACTGCCAGAACCAGCAGGGGCTGTGCTTGGG...GGGCACAGTGTTTCTGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp ACTACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGAGCCCCTGCTGGTTCTaGCAGTGTTCAGAAATACAT +
Preference number: 2 (lower is better)
Translates to: TTTSPVTTTVPSVQPIVKSPCWF*QCSEIH
Trigger: ATGTATTTCTGAACACTGCCAGAACCAGCAGGGGCT...CTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR TCA 90 bp CTGTTCAACTGCCTGCTCACATTGCTGTCCATATCCTTGCTTGGGGAGCTTCAAGGACTGCTCAGTTCCTaGGACAGGCTGATGACCCCT +
Preference number: 2 (lower is better)
Translates to: LFNCLLTLLSISLLGELQGLLSS*DRLMTP
Trigger: AGGGGTCATCAGCCTGTCTCAGGAACTGAGCAGTCC...TTGAAGCTCCCCAAGCAAGGATATGGACAGCAATGTGAGCAGGCAGTTGAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR GCA 90 bp TGGGAGTGGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGGGGATGGCTCTCCCCAGCCTaGTCTGTGATGTGTCACATG +
Preference number: 2 (lower is better)
Translates to: WEWRACVNSRYLEKDSGGWLSPA*SVMCHM
Trigger: CATGTGACACATCACAGAGCAGGCTGGGGAGAGCCA...TCCCCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR GCA 90 bp ACCACATCCAAAAACACCTCATTCTTTTGGCTCTGGTCAGAACGACTGGACAGGGGCGGCTGGCTGCGCTaGTTGGGGCCACTTTATTCT +
Preference number: 2 (lower is better)
Translates to: TTSKNTSFFWLWSERLDRGGWLR*LGPLYS
Trigger: AGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCCGCC...CCTGTCCAGTCGTTCTGACCAGAGCCAAAAGAATGAGGTGTTTTTGGATGTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR CCA 90 bp AGGTGGGAGTGGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGGAGCCCATCGTCAAGCTaGTCTCCACTGCTACCACTG +
Preference number: 2 (lower is better)
Translates to: RWEWRACVNSRYLEKDSGSPSSS*SPLLPL
Trigger: CAGTGGTAGCAGTGGAGACCAGCTTGACGATGGGCT...CCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp TGGGAGTGGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGGGGACAGCACCTCAGCTCCTaGCTCAGGCTCTACTACTAC +
Preference number: 2 (lower is better)
Translates to: WEWRACVNSRYLEKDSGGQHLSS*LRLYYY
Trigger: GTAGTAGTAGAGCCTGAGCCAGGAGCTGAGGTGCTG...TCCCCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR GCA 90 bp CTTTTCACTGTGACTTCTAACAGTAACACTGGATGGGCTCCTCTCATCTTTGTGCTCCACTGCTACCACTaGACCCCCAAGCACAGCCCC +
Preference number: 2 (lower is better)
Translates to: LFTVTSNSNTGWAPLIFVLHCYH*TPKHSP
Trigger: GGGGCTGTGCTTGGGGGTGCAGTGGTAGCAGTGGAG...CACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp CATGGTTGGGAAGTCCCTGCAAGCCAGGGACATCCATCTGGAAAAGGCCGGAGAAACACCTCATTCTTTTaGCTCTGGTCAGAACGACTG +
Preference number: 2 (lower is better)
Translates to: HGWEVPASQGHPSGKGRRNTSFF*LWSERL
Trigger: CAGTCGTTCTGACCAGAGCCAAAAGAATGAGGTGTT...TCTCCGGCCTTTTCCAGATGGATGTCCCTGGCTTGCAGGGACTTCCCAACCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CAA 90 bp AGAGCTACTTCTCAGTATCTTAGAGGCCTCAAGCTAGCAGCAGTCTaGACCATCCATTCACTGGGGACTACAAGGGAAGGTGGGAGTGGA +
Preference number: 2 (lower is better)
Translates to: RATSQYLRGLKLAAV*TIHSLGTTREGGSG
Trigger: TCCACTCCCACCTTCCCTTGTAGTCCCCAGTGAATGGATGGTCAAGACTGCTGCTAGCTTGAGGCCTCTAAGATACTGAGAAGTAGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR TCA 90 bp GTCCATATCCTTGCTTGGGGAGCTTCAAATCCGAATTACGTAGGCGTTGCTGTGGGTGCAGATGAATGTTaGGAGCTTGGCTCTTTGGGG +
Preference number: 2 (lower is better)
Translates to: VHILAWGASNPNYVGVAVGADEC*ELGSLG
Trigger: CCCCAAAGAGCCAAGCTCTCAACATTCATCTGCACC...CACAGCAACGCCTACGTAATTCGGATTTGAAGCTCCCCAAGCAAGGATATGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR CCA 90 bp CTGTTCAACTGCCTGCTCACATTGCTGTCCATATCCTTGCTTGGGGAGCTTCAAAAGGGAGAAGGTCCATaGTTGGGAAGTCCCTGCAAG +
Preference number: 2 (lower is better)
Translates to: LFNCLLTLLSISLLGELQKGEGP*LGSPCK
Trigger: CTTGCAGGGACTTCCCAACCATGGACCTTCTCCCTT...TTGAAGCTCCCCAAGCAAGGATATGGACAGCAATGTGAGCAGGCAGTTGAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CAA 90 bp TATCTCAGAACCGCTGGGAAGGAAGCTCTTGAGCCGTATCTCTCCTaGGACGTCCACCTTCAACAACGAGCCATTAGATGCAATCAGTAC +
Preference number: 2 (lower is better)
Translates to: YLRTAGKEALEPYLS*DVHLQQRAIRCNQY
Trigger: GTACTGATTGCATCTAATGGCTCGTTGTTGAAGGTGGACGTCCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCAGCGGTTCTGAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR GCA 90 bp CTTTTCACTGTGACTTCTAACAGTAACACTGGATGGGCTCCTCTCATCTTTGTGCAAGCTGGTCTCCACTaGTACCACTGCACCCCCAAG +
Preference number: 2 (lower is better)
Translates to: LFTVTSNSNTGWAPLIFVQAGLH*YHCTPK
Trigger: CTTGGGGGTGCAGTGGTAGCAGTGGAGACCAGCTTG...CACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR GCA 90 bp CTTTTCACTGTGACTTCTAACAGTAACACTGGATGGGCTCCTCTCATCTTTGTGCAGTACTGGCCAAGCTaGGCCCTCCACCTGACAATC +
Preference number: 2 (lower is better)
Translates to: LFTVTSNSNTGWAPLIFVQYWPS*ALHLTI
Trigger: GATTGTCAGGTGGAGGGCGCAGCTTGGCCAGTACTG...CACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp CTTTTCACTGTGACTTCTAACAGTAACACTGGATGGGCTCCTCTCATCTTTGTGAACCCAGCAGGTATGTaGAGCCAGGGTGAGGGGTGT +
Preference number: 2 (lower is better)
Translates to: LFTVTSNSNTGWAPLIFVNPAGM*SQGEGC
Trigger: ACACCCCTCACCCTGGCTCCACATACCTGCTGGGTT...CACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp AGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCTCTTAGGCCCTCGCACGCCTaGCTTATTGAAGGTCCCTGG +
Preference number: 2 (lower is better)
Translates to: SGSGLPSMLTFSSCVCSLRPSHA*LIEGPW
Trigger: CCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCT...AAGAGAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 90 bp TCTTCCTGTTCAACTGCCTGCTCACATTGCTGTCCATATCCTTGCTaGGGGAGCTTCAAATCCGAATTACGTAGGCGTTGCTGTGGCTTA +
Preference number: 2 (lower is better)
Translates to: SSCSTACSHCCPYPC*GSFKSELRRRCCGL
Trigger: TAAGCCACAGCAACGCCTACGTAATTCGGATTTGAAGCTCCCCAAGCAAGGATATGGACAGCAATGTGAGCAGGCAGTTGAACAGGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR GCA 90 bp GAATTACGTAGGCGTTGCTGTGGCTTAGATGTCGAACCCACTTGTGAGGATTGGATTCTGCTGTGTCTCTaGCCCGAACAATCCAACACT +
Preference number: 2 (lower is better)
Translates to: ELRRRCCGLDVEPTCEDWILLCL*PEQSNT
Trigger: AGTGTTGGATTGTTCGGGGCAGAGACACAGCAGAAT...CCAATCCTCACAAGTGGGTTCGACATCTAAGCCACAGCAACGCCTACGTAATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR CCA 90 bp TGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCTTTCACCATCCCCACTTaGGGGAAGTACCCTCTGTGG +
Preference number: 2 (lower is better)
Translates to: WSGSGLPSMLTFSSCVCSFTIPT*GKYPLW
Trigger: CCACAGAGGGTACTTCCCCCAAGTGGGGATGGTGAA...AGAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp CTTTTCACTGTGACTTCTAACAGTAACACTGGATGGGCTCCTCTCATCTTTGTGGAAGAGCTAGCTACCTaGAGTGGCTCAGGTCTGCCT +
Preference number: 2 (lower is better)
Translates to: LFTVTSNSNTGWAPLIFVEELAT*SGSGLP
Trigger: AGGCAGACCTGAGCCACTCCAGGTAGCTAGCTCTTC...CACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR TCA 90 bp GTTCCTCAGAATAAAAGTTGGATTTGTAAGTTTGTGAGCCTCCCGCATCACATACCCCAGCCTGCTCTGTaGTGTGTCACATGTGCTGAC +
Preference number: 2 (lower is better)
Translates to: VPQNKSWICKFVSLPHHIPQPAL*CVTCAD
Trigger: GTCAGCACATGTGACACATCACAGAGCAGGCTGGGG...TATGTGATGCGGGAGGCTCACAAACTTACAAATCCAACTTTTATTCTGAGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp AGGTGGGAGTGGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGGTTCAGAAATACATTGTaGTCTCTCTTCCCCCAACAG +
Preference number: 2 (lower is better)
Translates to: RWEWRACVNSRYLEKDSGFRNTL*SLFPQQ
Trigger: CTGTTGGGGGAAGAGAGACCACAATGTATTTCTGAA...CCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCACCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CCA 90 bp TGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCTAAGCACAGCCCCTGCTaGTTCTGGCAGTGTTCAGAA +
Preference number: 2 (lower is better)
Translates to: WSGSGLPSMLTFSSCVCSKHSPC*FWQCSE
Trigger: TTCTGAACACTGCCAGAACCAGCAGGGGCTGTGCTT...AGAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR GCA 90 bp CTGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCACTGCCTGCTCACATTaGTGTCCATATCCTTGCTTG +
Preference number: 2 (lower is better)
Translates to: LEWLRSAFNVNIFFLCLFTACSH*CPYPCL
Trigger: CAAGCAAGGATATGGACAGCAATGTGAGCAGGCAGT...GAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR GCA 90 bp GTTCCTCAGAATAAAAGTTGGATTTGTAAGTTTGTGAGCCTCCCGCATCACATACTGGCTCCATTGCCTTaGCTGTTCAGACACTGGTGT +
Preference number: 2 (lower is better)
Translates to: VPQNKSWICKFVSLPHHILAPLP*LFRHWC
Trigger: ACACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAG...TATGTGATGCGGGAGGCTCACAAACTTACAAATCCAACTTTTATTCTGAGGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR GCA 90 bp CTGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCAACCTAATCCCTTCATaGTCAAACTCGGACAGCATA +
Preference number: 2 (lower is better)
Translates to: LEWLRSAFNVNIFFLCLFNLIPS*SNSDSI
Trigger: TATGCTGTCCGAGTTTGAGCATGAAGGGATTAGGTT...GAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 90 bp TTGTTGTTATGCTGCTGGGAATTGAACTTGGGGCCATATACTTGTTaGCAAAGCATTCTACCAATGACGCTATATTCTCCTTGGCCCTTT +
Preference number: 2 (lower is better)
Translates to: LLLCCWELNLGPYTC*QSILPMTLYSPWPF
Trigger: AAAGGGCCAAGGAGAATATAGCGTCATTGGTAGAATGCTTTGCAAACAAGTATATGGCCCCAAGTTCAATTCCCAGCAGCATAACAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 90 bp CTTTTTGTTGTTATGCTGCTGGGAATTGAACTTGGGGCCATATACTaGTTTGCAAAGCATTCTACCAATGACGCTATATTCTCCTTGGCC +
Preference number: 2 (lower is better)
Translates to: LFVVMLLGIELGAIY*FAKHSTNDAIFSLA
Trigger: GGCCAAGGAGAATATAGCGTCATTGGTAGAATGCTTTGCAAACAAGTATATGGCCCCAAGTTCAATTCCCAGCAGCATAACAACAAAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR TCA 90 bp GTTCCTCAGAATAAAAGTTGGATTTGTAAGTTTGTGAGCCTCCCGCATCACATACAAACTCATCTAGATTaGCAGAACTATGGAATGACA +
Preference number: 2 (lower is better)
Translates to: VPQNKSWICKFVSLPHHIQTHLD*QNYGMT
Trigger: TGTCATTCCATAGTTCTGTCAATCTAGATGAGTTTG...TATGTGATGCGGGAGGCTCACAAACTTACAAATCCAACTTTTATTCTGAGGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CCA 72 bp CCTTTCACAGGCCCCTCAGCCAGGCCCTCGCACGCCTaGCTTATTGAAGGTCCCTGGCTCCATTGCCTTGCC +
Preference number: 3 (lower is better)
Translates to: PFTGPSARPSHA*LIEGPWLHCLA
Trigger: GGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCCTGTGAAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 72 bp GGCTCTGGTCAGAACGACTGGACAGGACAGGGCGGCTaGCTGCGCTGCTTGGGGCCACTTTATTCTGCTGTG +
Preference number: 3 (lower is better)
Translates to: GSGQNDWTGQGG*LRCLGPLYSAV
Trigger: CACAGCAGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCCGCCCTGTCCTGTCCAGTCGTTCTGACCAGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CCA 72 bp AGGCTGGCAGGACCCAGCCCCAAGGGAGAAGGTCCATaGTTGGGAAGTCCCTGCAAGCCAGGGACATCCATC +
Preference number: 3 (lower is better)
Translates to: RLAGPSPKGEGP*LGSPCKPGTSI
Trigger: GATGGATGTCCCTGGCTTGCAGGGACTTCCCAACCATGGACCTTCTCCCTTGGGGCTGGGTCCTGCCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CCA 72 bp CGGAGCATGTGTGCCGAGGGAGTTCAAAGGAGAGGCTaGCAGGACCCAGCCCCAAGGGAGAAGGTCCATGGT +
Preference number: 3 (lower is better)
Translates to: RSMCAEGVQRRG*QDPAPREKVHG
Trigger: ACCATGGACCTTCTCCCTTGGGGCTGGGTCCTGCCAGCCTCTCCTTTGAACTCCCTCGGCACACATGCTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR TCA 72 bp TCCTGTGTCTGTTCTCTTCATAGCCTCGGCCCACACTaGCCCTTTCACAGGCCCCTCAGCCAGGCCCTCGCA +
Preference number: 3 (lower is better)
Translates to: SCVCSLHSLGPH*PFHRPLSQALA
Trigger: TGCGAGGGCCTGGCTGAGGGGCCTGTGAAAGGGTCAGTGTGGGCCGAGGCTATGAAGAGAACAGACACAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR TCA 72 bp CTGTGCCCCAGTACTGGCCAAGCTGCGCCCTCCACCTaGCAATCAGGATGCCTACCGGGGAGAATTTGGGTC +
Preference number: 3 (lower is better)
Translates to: LCPSTGQAAPST*QSGCLPGRIWV
Trigger: GACCCAAATTCTCCCCGGTAGGCATCCTGATTGTCAGGTGGAGGGCGCAGCTTGGCCAGTACTGGGGCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 72 bp GGGCGGCTGGCTGCGCTGCTTGGGGCCACTTTATTCTaGTGTGTCTCTGCCCCGAACAATCCAACACTGCTG +
Preference number: 3 (lower is better)
Translates to: GRLAALLGATLF*CVSAPNNPTLL
Trigger: CAGCAGTGTTGGATTGTTCGGGGCAGAGACACAGCAGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCCGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 72 bp CTGGTCAGAACGACTGGACAGGACAGGGCGGCTGGCTaGGCTGCTTGGGGCCACTTTATTCTGCTGTGTCTC +
Preference number: 3 (lower is better)
Translates to: LVRTTGQDRAAG*AAWGHFILLCL
Trigger: GAGACACAGCAGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCCGCCCTGTCCTGTCCAGTCGTTCTGACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CCA 72 bp GCCAGGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTaGCTCCATTGCCTTGCCTGTTCAGACACTGGTGTC +
Preference number: 3 (lower is better)
Translates to: ARPSHAWLIEGP*LHCLACSDTGV
Trigger: GACACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 72 bp TGGCAGGACCCAGCCCCAAGGGAGAAGGTCCATGGTTaGGAAGTCCCTGCAAGCCAGGGACATCCATCTGGA +
Preference number: 3 (lower is better)
Translates to: WQDPAPREKVHG*EVPASQGHPSG
Trigger: TCCAGATGGATGTCCCTGGCTTGCAGGGACTTCCCAACCATGGACCTTCTCCCTTGGGGCTGGGTCCTGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 72 bp CTACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTaGAGCCCATCGTCAAGCTGGTCTCCACTGCTACCA +
Preference number: 3 (lower is better)
Translates to: LLPLLSPPRFPA*SPSSSWSPLLP
Trigger: TGGTAGCAGTGGAGACCAGCTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 72 bp AGCCCCAAGGGAGAAGGTCCATGGTTGGGAAGTCCCTaGAAGCCAGGGACATCCATCTGGAAAAGGCCGGAG +
Preference number: 3 (lower is better)
Translates to: SPKGEGPWLGSP*KPGTSIWKRPE
Trigger: CTCCGGCCTTTTCCAGATGGATGTCCCTGGCTTGCAGGGACTTCCCAACCATGGACCTTCTCCCTTGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 72 bp AGTCTGAGGAATCGAACCTGGAGACCGGAGCATGTGTaGCGAGGGAGTTCAAAGGAGAGGCTGGCAGGACCC +
Preference number: 3 (lower is better)
Translates to: SLRNRTWRPEHV*RGSSKERLAGP
Trigger: GGGTCCTGCCAGCCTCTCCTTTGAACTCCCTCGGCACACATGCTCCGGTCTCCAGGTTCGATTCCTCAGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CCA 72 bp AGGTCCCTGGCTCCATTGCCTTGCCTGTTCAGACACTaGTGTCTGCGAGAGCTGCTGCTCCTCCTCAGCCTT +
Preference number: 3 (lower is better)
Translates to: RSLAPLPCLFRH*CLRELLLLLSL
Trigger: AAGGCTGAGGAGGAGCAGCAGCTCTCGCAGACACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR TCA 72 bp CAGCCTACTGGACCTGGCTCTCCCCAGCCTGCTCTGTaGTGTGTCACATGTGCTGACCTCCTCTCTTGTGCA +
Preference number: 3 (lower is better)
Translates to: QPTGPGSPQPAL*CVTCADLLSCA
Trigger: TGCACAAGAGAGGAGGTCAGCACATGTGACACATCACAGAGCAGGCTGGGGAGAGCCAGGTCCAGTAGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR TCA 72 bp CCACTGCACAGAGGGAAAGAGCCGGAAGGGGAGTGGTaGGGGGAGGTCATCAGAGAGCTGGTATCTCATCAC +
Preference number: 3 (lower is better)
Translates to: PLHRGKEPEGEW*GEVIRELVSHH
Trigger: GTGATGAGATACCAGCTCTCTGATGACCTCCCCTCACCACTCCCCTTCCGGCTCTTTCCCTCTGTGCAGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 72 bp TCGCACGCCTGGCTTATTGAAGGTCCCTGGCTCCATTaGCTTGCCTGTTCAGACACTGGTGTCTGCGAGAGC +
Preference number: 3 (lower is better)
Translates to: SHAWLIEGPWLH*LACSDTGVCES
Trigger: GCTCTCGCAGACACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 72 bp TCTCTGTTCCCATGTGGTGAAGGCCAGGGCCCAGGCTaGTCTACAAGCTCAGCAGGTCAACAGGACCACACT +
Preference number: 3 (lower is better)
Translates to: SLFPCGEGQGPG*STSSAGQQDHT
Trigger: AGTGTGGTCCTGTTGACCTGCTGAGCTTGTAGAGCAGCCTGGGCCCTGGCCTTCACCACATGGGAACAGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 72 bp CAATCAGGATGCCTACCGGGGAGAATTTGGGTCCCTTaGGCCCCTTCTCTGTTCCCATGTGGTGAAGGCCAG +
Preference number: 3 (lower is better)
Translates to: QSGCLPGRIWVP*APSLFPCGEGQ
Trigger: CTGGCCTTCACCACATGGGAACAGAGAAGGGGCCCAAGGGACCCAAATTCTCCCCGGTAGGCATCCTGATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 72 bp GAGCTGGTATCTCATCACAGTCAGCTCGCCCTGAGGTaGCTGCAGGCGGAGGATCCGATGAGACTCAAACTC +
Preference number: 3 (lower is better)
Translates to: ELVSHHSQLALR*LQAEDPMRLKL
Trigger: GAGTTTGAGTCTCATCGGATCCTCCGCCTGCAGCCACCTCAGGGCGAGCTGACTGTGATGAGATACCAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 72 bp CTCCACTGCTACCACTGCACCCCCAAGCACAGCCCCTaGTGGTTCTGGCAGTGTTCAGAAATACATTGTGGT +
Preference number: 3 (lower is better)
Translates to: LHCYHCTPKHSP*WFWQCSEIHCG
Trigger: ACCACAATGTATTTCTGAACACTGCCAGAACCAGCAGGGGCTGTGCTTGGGGGTGCAGTGGTAGCAGTGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 72 bp CCACAGGCACTAAAGGACAGTCTGAGGAATCGAACCTaGAGACCGGAGCATGTGTGCCGAGGGAGTTCAAAG +
Preference number: 3 (lower is better)
Translates to: PQALKDSLRNRT*RPEHVCRGSSK
Trigger: CTTTGAACTCCCTCGGCACACATGCTCCGGTCTCCAGGTTCGATTCCTCAGACTGTCCTTTAGTGCCTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR CAA 90 bp ACTACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGAACTGCCTGCTCACATaGCTGTCCATATCCTTGCTT +
Preference number: 3 (lower is better)
Translates to: TTTSPVTTTVPSVQPIVKNCLLT*LSISLL
Trigger: AAGCAAGGATATGGACAGCAATGTGAGCAGGCAGTT...CTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CCA 72 bp CCGCTGGGAAGGAAGCTCTTGAGCCGTATCTCTCCTTaGACGTCCACCTTCAACAACGAGCCATTAGATGCA +
Preference number: 3 (lower is better)
Translates to: PLGRKLLSRISP*TSTFNNEPLDA
Trigger: TGCATCTAATGGCTCGTTGTTGAAGGTGGACGTCCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCAGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR CAA 90 bp ACACCTCATCAACTCGAATCCCTGGCCCATAACCTCTCAGTTCTGACTTTCCAAGGCTGGCTGCGCTGCTaGGGGCCACTTTATTCTGCT +
Preference number: 3 (lower is better)
Translates to: TPHQLESLAHNLSVLTFQGWLRC*GPLYSA
Trigger: AGCAGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCC...TTGGAAAGTCAGAACTGAGAGGTTATGGGCCAGGGATTCGAGTTGATGAGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 72 bp CCTCTCATCTTTGTGGGAGGATACCAGCCCTTACTCTaGCTTCTCTACAGAAACACTGTGCCCCAGTACTGG +
Preference number: 3 (lower is better)
Translates to: PLIFVGGYQPLL*LLYRNTVPQYW
Trigger: CCAGTACTGGGGCACAGTGTTTCTGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAAGATGAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CAA 90 bp CTGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCAGGTCCCTGGCTCCATaGCCTTGCCTGTTCAGACAC +
Preference number: 3 (lower is better)
Translates to: LEWLRSAFNVNIFFLCLFRSLAP*PCLFRH
Trigger: GTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCT...GAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR-3UTR CAA 90 bp CCACTTGTGAGGATTGGCATTACCACAGGCACTAAAGGACAGTCTGAGGAATCGAAGAGGCTGAAGGGCTaGCTGACCACAGCTTCAGTT +
Preference number: 3 (lower is better)
Translates to: PLVRIGITTGTKGQSEESKRLKG*LTTASV
Trigger: AACTGAAGCTGTGGTCAGCAAGCCCTTCAGCCTCTT...CGATTCCTCAGACTGTCCTTTAGTGCCTGTGGTAATGCCAATCCTCACAAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR TCA 72 bp CAATGCATATCTCAGAACCGCTGGGAAGGAAGCTCTTaGGCCGTATCTCTCCTTGGACGTCCACCTTCAACA +
Preference number: 3 (lower is better)
Translates to: QCISQNRWEGSS*AVSLLGRPPST
Trigger: TGTTGAAGGTGGACGTCCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCAGCGGTTCTGAGATATGCATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 72 bp TGCTTGGGGAGCTTCAAATCCGAATTACGTAGGCGTTaGTGTGGCTTAGATGTCGAACCCACTTGTGAGGAT +
Preference number: 3 (lower is better)
Translates to: CLGSFKSELRRR*CGLDVEPTCED
Trigger: ATCCTCACAAGTGGGTTCGACATCTAAGCCACAGCAACGCCTACGTAATTCGGATTTGAAGCTCCCCAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CCA 72 bp CTAACAGTAACACTGGATGGGCTCCTCTCATCTTTGTaGGAGGATACCAGCCCTTACTCTGCCTTCTCTACA +
Preference number: 3 (lower is better)
Translates to: LTVTLDGLLSSL*EDTSPYSAFST
Trigger: TGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR TCA 72 bp TCAAGTGCTGTGTCCAGAGGCCATTGCTTTTCACTGTaGCTTCTAACAGTAACACTGGATGGGCTCCTCTCA +
Preference number: 3 (lower is better)
Translates to: SSAVSRGHCFSL*LLTVTLDGLLS
Trigger: TGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAGCAATGGCCTCTGGACACAGCACTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 72 bp CTGGGGAAACCTCCAAGCTGTAACCTAATCCCTTCATaGTCAAACTCGGACAGCATAAGAGCTACTTCTCAG +
Preference number: 3 (lower is better)
Translates to: LGKPPSCNLIPS*SNSDSIRATSQ
Trigger: CTGAGAAGTAGCTCTTATGCTGTCCGAGTTTGAGCATGAAGGGATTAGGTTACAGCTTGGAGGTTTCCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 72 bp TCCAACCAAGTTTATTGTAATGTCCTCATCTTCCAGTaGCTCATCAACCCAGCAGGTATGTGGAGCCAGGGT +
Preference number: 3 (lower is better)
Translates to: SNQVYCNVLIFQ*LINPAGMWSQG
Trigger: ACCCTGGCTCCACATACCTGCTGGGTTGATGAGGCACTGGAAGATGAGGACATTACAATAAACTTGGTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR GCA 72 bp TCCTTGGACGTCCACCTTCAACAACGAGCCATTAGATaGAATCAGTACAGACAGTCTCTCCACCACATCCAA +
Preference number: 3 (lower is better)
Translates to: SLDVHLQQRAIR*NQYRQSLHHIQ
Trigger: TTGGATGTGGTGGAGAGACTGTCTGTACTGATTGCATCTAATGGCTCGTTGTTGAAGGTGGACGTCCAAGGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR GCA 72 bp TGTTCAACTGCCTGCTCACATTGCTGTCCATATCCTTaGTTGGGGAGCTTCAAATCCGAATTACGTAGGCGT +
Preference number: 3 (lower is better)
Translates to: CSTACSHCCPYP*LGSFKSELRRR
Trigger: ACGCCTACGTAATTCGGATTTGAAGCTCCCCAAGCAAGGATATGGACAGCAATGTGAGCAGGCAGTTGAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR TCA 72 bp GGCGGAGGATCCGATGAGACTCAAACTCATCTAGATTaGCAGAACTATGGAATGACACCTCATCAACTCGAA +
Preference number: 3 (lower is better)
Translates to: GGGSDETQTHLD*QNYGMTPHQLE
Trigger: TTCGAGTTGATGAGGTGTCATTCCATAGTTCTGTCAATCTAGATGAGTTTGAGTCTCATCGGATCCTCCGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR-3UTR CAA 90 bp GTTCCTCAGAATAAAAGTTGGATTTGTAAGTTTGTGAGCCTCCCGCATCACATAAACTGCCTGCTCACATaGCTGTCCATATCCTTGCTT +
Preference number: 3 (lower is better)
Translates to: VPQNKSWICKFVSLPHHINCLLT*LSISLL
Trigger: AAGCAAGGATATGGACAGCAATGTGAGCAGGCAGTT...TATGTGATGCGGGAGGCTCACAAACTTACAAATCCAACTTTTATTCTGAGGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019662.11
ENSMUST00000143241.8
3UTR TCA 72 bp ATCAACTCGAATCCCTGGCCCATAACCTCTCAGTTCTaGCTTTCCAACACAAAATTCTTCTGTCAAGCCAAT +
Preference number: 3 (lower is better)
Translates to: INSNPWPITSQF*LSNTKFFCQAN
Trigger: ATTGGCTTGACAGAAGAATTTTGTGTTGGAAAGTCAGAACTGAGAGGTTATGGGCCAGGGATTCGAGTTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR TCA 90 bp ACAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTGGCTCCCGGAAGGGGAGTGGTaGGGGGAGGTCATCAGAGAG +
Preference number: 4 (lower is better)
Translates to: TGPSARPSHAWLIEGPWLPEGEW*GEVIRE
Trigger: CTCTCTGATGACCTCCCCTCACCACTCCCCTTCCGG...GAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCCTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp CAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATaGAAGGTCCCTGGCTCCATTGCCTTGCCTGTTCAG +
Preference number: 4 (lower is better)
Translates to: QAPQPGPRTPGL*KVPGSIALPVQ
Trigger: CTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp CTGGCAGGACCCAGCCCCAAGGGAGAAGGTCCATGGTaGGGAAGTCCCTGCAAGCCAGGGACATCCATCTGG +
Preference number: 4 (lower is better)
Translates to: LAGPSPKGEGPW*GSPCKPGTSIW
Trigger: CCAGATGGATGTCCCTGGCTTGCAGGGACTTCCCAACCATGGACCTTCTCCCTTGGGGCTGGGTCCTGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR GCA 90 bp AGGCTAATGGCTCGCAGCCTACTGGACCTGGCTCTCCCCAGCCTGCTCTGTGATGGCGGCTGGCTGCGCTaGTTGGGGCCACTTTATTCT +
Preference number: 4 (lower is better)
Translates to: RLMARSLLDLALPSLLCDGGWLR*LGPLYS
Trigger: AGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCCGCC...ATCACAGAGCAGGCTGGGGAGAGCCAGGTCCAGTAGGCTGCGAGCCATTAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp ACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGCTGGGACTGCTCAGTTCCTaGGACAGGCTGATGACCCCT +
Preference number: 4 (lower is better)
Translates to: TTSPVTTTVPSVQPIVKLGLLSS*DRLMTP
Trigger: AGGGGTCATCAGCCTGTCTCAGGAACTGAGCAGTCC...CAGCTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp ACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGCTGCCCAGCTCTGCCTTCTaGTCTGGACTGCTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: TTSPVTTTVPSVQPIVKLPSSAF*SGLLSS
Trigger: GGAACTGAGCAGTCCAGATCAGAAGGCAGAGCTGGG...CAGCTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp ACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGCTGAAAAGGCCGGAGAGTTaGGAGCCTCCTTGTACCCGG +
Preference number: 4 (lower is better)
Translates to: TTSPVTTTVPSVQPIVKLKRPES*EPPCTR
Trigger: CCGGGTACAAGGAGGCTCTCAACTCTCCGGCCTTTT...CAGCTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp CAAGCCAGGGACATCCATCTGGAAAAGGCCGGAGAGTaGAGAGCCTCCTTGTACCCGGGGCAGATCCCAGTG +
Preference number: 4 (lower is better)
Translates to: QARDIHLEKAGE*RASLYPGQIPV
Trigger: CACTGGGATCTGCCCCGGGTACAAGGAGGCTCTCAACTCTCCGGCCTTTTCCAGATGGATGTCCCTGGCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR TCA 90 bp CCCCTGCTGGTTCTGGCAGTGTTCAGAAATACATTGTGGTCTCTCTTCCCCCAAACAGTCAGCTCGCCCTaGGGTGGCTGCAGGCGGAGG +
Preference number: 4 (lower is better)
Translates to: PLLVLAVFRNTLWSLFPQTVSSP*GGCRRR
Trigger: CCTCCGCCTGCAGCCACCTCAGGGCGAGCTGACTGT...TTGGGGGAAGAGAGACCACAATGTATTTCTGAACACTGCCAGAACCAGCAGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp TGGGAGTGGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGGGGACAGCTCGCCCTGAGGTaGCTGCAGGCGGAGGATCCG +
Preference number: 4 (lower is better)
Translates to: WEWRACVNSRYLEKDSGGQLALR*LQAEDP
Trigger: CGGATCCTCCGCCTGCAGCCACCTCAGGGCGAGCTG...TCCCCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp CATCACAGTCAGCTCGCCCTGAGGTGGCTGCAGGCGGAGGATCCGATGAGACTCGCAGCTCCAGAAGGCTaGAAGGAGAGACGTTTTCTA +
Preference number: 4 (lower is better)
Translates to: HHSQLALRWLQAEDPMRLAAPEG*KERRFL
Trigger: TAGAAAACGTCTCTCCTTTCAGCCTTCTGGAGCTGC...GAGTCTCATCGGATCCTCCGCCTGCAGCCACCTCAGGGCGAGCTGACTGTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CAA 72 bp ATCCATCTGGAAAAGGCCGGAGAGTTGAGAGCCTCCTaGTACCCGGGGCAGATCCCAGTGAAGGGCTCCTTC +
Preference number: 4 (lower is better)
Translates to: IHLEKAGELRAS*YPGQIPVKGSF
Trigger: GAAGGAGCCCTTCACTGGGATCTGCCCCGGGTACAAGGAGGCTCTCAACTCTCCGGCCTTTTCCAGATGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR TCA 90 bp ACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGCTGGCAGCTCCAGAAGGCTaGAAGGAGAGACGTTTTCTA +
Preference number: 4 (lower is better)
Translates to: TTSPVTTTVPSVQPIVKLAAPEG*KERRFL
Trigger: TAGAAAACGTCTCTCCTTTCAGCCTTCTGGAGCTGC...CAGCTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp CAGGGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATGGTTCCCTCATTGAGTaGGCCACAGTAGTCACCCAA +
Preference number: 4 (lower is better)
Translates to: QGPGCSTSSAGQQDHTHHGSLIE*ATVVTQ
Trigger: TTGGGTGACTACTGTGGCTCACTCAATGAGGGAACC...ATGGTGAGTGTGGTCCTGTTGACCTGCTGAGCTTGTAGAGCAGCCTGGGCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR GCA 90 bp CATGGTTGGGAAGTCCCTGCAAGCCAGGGACATCCATCTGGAAAAGGCCGGAGACCGGTAGAAGAGCTCTaGCACATCACGACCACCACT +
Preference number: 4 (lower is better)
Translates to: HGWEVPASQGHPSGKGRRPVEEL*HITTTT
Trigger: AGTGGTGGTCGTGATGTGGCAGAGCTCTTCTACCGG...TCTCCGGCCTTTTCCAGATGGATGTCCCTGGCTTGCAGGGACTTCCCAACCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CAA 72 bp ACGCCTGGCTTATTGAAGGTCCCTGGCTCCATTGCCTaGCCTGTTCAGACACTGGTGTCTGCGAGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: TPGLLKVPGSIA*PVQTLVSARAA
Trigger: AGCAGCTCTCGCAGACACCAGTGTCTGAACAGGCAAGGCAATGGAGCCAGGGACCTTCAATAAGCCAGGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp TCAGGATGCCTACCGGGGAGAATTTGGGTCCCTTGGGCCCCTTCTCTGTTCCCAGGAAGTCTTTATAGATaGGCGGATCCCCCTTGGAAG +
Preference number: 4 (lower is better)
Translates to: SGCLPGRIWVPWAPSLFPGSLYR*ADPPWK
Trigger: CTTCCAAGGGGGATCCGCTCATCTATAAAGACTTCC...TGGGAACAGAGAAGGGGCCCAAGGGACCCAAATTCTCCCCGGTAGGCATCCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp GGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATCACTGTCGAACCCACTTGTaGGGATTGGCATTACCACAG +
Preference number: 4 (lower is better)
Translates to: GPGCSTSSAGQQDHTHHHCRTHL*GLALPQ
Trigger: CTGTGGTAATGCCAATCCTCACAAGTGGGTTCGACA...GTGATGGTGAGTGTGGTCCTGTTGACCTGCTGAGCTTGTAGAGCAGCCTGGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp GGTTCTGGCAGTGTTCAGAAATACATTGTGGTCTCTCTTCCCCCAACAGGGGAAAGCCGGCCTGAGCCTTaGTCCCACTGCACAGAGGGA +
Preference number: 4 (lower is better)
Translates to: GSGSVQKYIVVSLPPTGESRPEP*SHCTEG
Trigger: TCCCTCTGTGCAGTGGGACCAAGGCTCAGGCCGGCT...TTCCCCTGTTGGGGGAAGAGAGACCACAATGTATTTCTGAACACTGCCAGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp CGCCCTGAGGTGGCTGCAGGCGGAGGATCCGATGAGACTCAAACTCATCTAGATGGAAGTCTTTATAGATaGGCGGATCCCCCTTGGAAG +
Preference number: 4 (lower is better)
Translates to: RPEVAAGGGSDETQTHLDGSLYR*ADPPWK
Trigger: CTTCCAAGGGGGATCCGCTCATCTATAAAGACTTCC...ATCTAGATGAGTTTGAGTCTCATCGGATCCTCCGCCTGCAGCCACCTCAGGGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR TCA 90 bp ACAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTGGCTCATAACCTCTCAGTTCTaGCTTTCCAACACAAAATTC +
Preference number: 4 (lower is better)
Translates to: TGPSARPSHAWLIEGPWLITSQF*LSNTKF
Trigger: GAATTTTGTGTTGGAAAGTCAGAACTGAGAGGTTAT...GAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp CTGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCAACCTGGAGCCGGCCTaGGCCTTGGTCCCACTGCAC +
Preference number: 4 (lower is better)
Translates to: LEWLRSAFNVNIFFLCLFNLEPA*ALVPLH
Trigger: GTGCAGTGGGACCAAGGCTCAGGCCGGCTCCAGGTT...GAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR GCA 90 bp GGTTCTGGCAGTGTTCAGAAATACATTGTGGTCTCTCTTCCCCCAACAGGGGAAGAGCCTTGGTCCCACTaGACAGAGGGAAAGAGCCGG +
Preference number: 4 (lower is better)
Translates to: GSGSVQKYIVVSLPPTGEEPWSH*TEGKSR
Trigger: CCGGCTCTTTCCCTCTGTGCAGTGGGACCAAGGCTC...TTCCCCTGTTGGGGGAAGAGAGACCACAATGTATTTCTGAACACTGCCAGAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp GGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATCACAGGTCATCAGAGAGCTaGTATCTCATCACAGTCAGC +
Preference number: 4 (lower is better)
Translates to: GPGCSTSSAGQQDHTHHHRSSES*YLITVS
Trigger: GCTGACTGTGATGAGATACCAGCTCTCTGATGACCT...GTGATGGTGAGTGTGGTCCTGTTGACCTGCTGAGCTTGTAGAGCAGCCTGGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp ACCGCTGGGAAGGAAGCTCTTGAGCCGTATCTCTCCTaGGACGTCCACCTTCAACAACGAGCCATTAGATGC +
Preference number: 4 (lower is better)
Translates to: TAGKEALEPYLS*DVHLQQRAIRC
Trigger: GCATCTAATGGCTCGTTGTTGAAGGTGGACGTCCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCAGCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR GCA 90 bp TGGGAGTGGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGGGGAGGGGCCACTTTATTCTaGTGTGTCTCTGCCCCGAAC +
Preference number: 4 (lower is better)
Translates to: WEWRACVNSRYLEKDSGGGATLF*CVSAPN
Trigger: GTTCGGGGCAGAGACACAGCAGAATAAAGTGGCCCC...TCCCCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp CATCCATCTGGAAAAGGCCGGAGAGTTGAGAGCCTCCTTGTACCCGGGGCAGATCGTTTTCTAAGGTTGTaGCCACCAAATAGAGCCCAC +
Preference number: 4 (lower is better)
Translates to: HPSGKGRRVESLLVPGADRFLRL*PPNRAH
Trigger: GTGGGCTCTATTTGGTGGCCACAACCTTAGAAAACG...ATCTGCCCCGGGTACAAGGAGGCTCTCAACTCTCCGGCCTTTTCCAGATGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
3UTR CAA 72 bp CCAATGCATATCTCAGAACCGCTGGGAAGGAAGCTCTaGAGCCGTATCTCTCCTTGGACGTCCACCTTCAAC +
Preference number: 4 (lower is better)
Translates to: PMHISEPLGRKL*SRISPWTSTFN
Trigger: GTTGAAGGTGGACGTCCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCAGCGGTTCTGAGATATGCATTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR TCA 90 bp TGGGAGTGGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGGGGAGGTGCAGATGAATGTTaGGAGCTTGGCTCTTTGGGG +
Preference number: 4 (lower is better)
Translates to: WEWRACVNSRYLEKDSGGGADEC*ELGSLG
Trigger: CCCCAAAGAGCCAAGCTCTCAACATTCATCTGCACC...TCCCCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp AGGTGGGAGTGGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGGAGGGGAAGGTGCAGATaGATGTTGAGAGCTTGGCTC +
Preference number: 4 (lower is better)
Translates to: RWEWRACVNSRYLEKDSGRGRCR*MLRAWL
Trigger: GAGCCAAGCTCTCAACATTCATCTGCACCTTCCCCT...CCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp ACTACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGACCACAGCTTCAGTTTaGATGAAGTTCCTCAGCATT +
Preference number: 4 (lower is better)
Translates to: TTTSPVTTTVPSVQPIVKTTASV*MKFLSI
Trigger: AATGCTGAGGAACTTCATCCAAACTGAAGCTGTGGT...CTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp AGGTCAGCTGCTGAGGGAGGAAATGTACCCAGGTTTGGGATAGCGTTTGTCATACTGAGGAATCGAACCTaGAGACCGGAGCATGTGTGC +
Preference number: 4 (lower is better)
Translates to: RSAAEGGNVPRFGIAFVILRNRT*RPEHVC
Trigger: GCACACATGCTCCGGTCTCCAGGTTCGATTCCTCAG...TATGACAAACGCTATCCCAAACCTGGGTACATTTCCTCCCTCAGCAGCTGACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR GCA 90 bp CTCTCATCTTTGTGGGAGGATACCAGCCCTTACTCTGCCTTCTCTACAGAAACACCGGTAGAAGAGCTCTaGCACATCACGACCACCACT +
Preference number: 4 (lower is better)
Translates to: LSSLWEDTSPYSAFSTETPVEEL*HITTTT
Trigger: AGTGGTGGTCGTGATGTGGCAGAGCTCTTCTACCGG...TGTTTCTGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAAGATGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp AGGCTAATGGCTCGCAGCCTACTGGACCTGGCTCTCCCCAGCCTGCTCTGTGATAGATTGACAGAACTATaGAATGACACCTCATCAACT +
Preference number: 4 (lower is better)
Translates to: RLMARSLLDLALPSLLCDRLTEL*NDTSST
Trigger: AGTTGATGAGGTGTCATTCCATAGTTCTGTCAATCT...ATCACAGAGCAGGCTGGGGAGAGCCAGGTCCAGTAGGCTGCGAGCCATTAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR GCA 90 bp TTTGTGGGAGGATACCAGCCCTTACTCTGCCTTCTCTACAGAAACACTGTGCCCATTCTGCTGTGTCTCTaGCCCGAACAATCCAACACT +
Preference number: 4 (lower is better)
Translates to: FVGGYQPLLCLLYRNTVPILLCL*PEQSNT
Trigger: AGTGTTGGATTGTTCGGGGCAGAGACACAGCAGAAT...GGGCACAGTGTTTCTGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR GCA 90 bp CTGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCTGGTTGGGAAGTCCCTaGAAGCCAGGGACATCCATC +
Preference number: 4 (lower is better)
Translates to: LEWLRSAFNVNIFFLCLFWLGSP*KPGTSI
Trigger: GATGGATGTCCCTGGCTTGCAGGGACTTCCCAACCA...GAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp CTCTCATCTTTGTGGGAGGATACCAGCCCTTACTCTGCCTTCTCTACAGAAACAAAGGGAGAAGGTCCATaGTTGGGAAGTCCCTGCAAG +
Preference number: 4 (lower is better)
Translates to: LSSLWEDTSPYSAFSTETKGEGP*LGSPCK
Trigger: CTTGCAGGGACTTCCCAACCATGGACCTTCTCCCTT...TGTTTCTGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAAGATGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp TCTCAGTATCTTAGAGGCCTCAAGCTAGCAGCAGTCTaGACCATCCATTCACTGGGGACTACAAGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: SQYLRGLKLAAV*TIHSLGTTREG
Trigger: ACCTTCCCTTGTAGTCCCCAGTGAATGGATGGTCAAGACTGCTGCTAGCTTGAGGCCTCTAAGATACTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp CTTCTAACAGTAACACTGGATGGGCTCCTCTCATCTTaGTGGGAGGATACCAGCCCTTACTCTGCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: LLTVTLDGLLSS*WEDTSPYSAFS
Trigger: AGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp TCAACTGCCTGCTCACATTGCTGTCCATATCCTTGCTaGGGGAGCTTCAAATCCGAATTACGTAGGCGTTGC +
Preference number: 4 (lower is better)
Translates to: STACSHCCPYPC*GSFKSELRRRC
Trigger: GCAACGCCTACGTAATTCGGATTTGAAGCTCCCCAAGCAAGGATATGGACAGCAATGTGAGCAGGCAGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR TCA 90 bp CTTTTCACTGTGACTTCTAACAGTAACACTGGATGGGCTCCTCTCATCTTTGTGTGGGAAGGAAGCTCTTaGGCCGTATCTCTCCTTGGA +
Preference number: 4 (lower is better)
Translates to: LFTVTSNSNTGWAPLIFVWEGSS*AVSLLG
Trigger: TCCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCA...CACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR TCA 90 bp AAGCAAGGACAACATGACCCTAGACCCTCCTTTCTCGCTCAGGTTCTGTCCCTCCAAACTCATCTAGATTaGCAGAACTATGGAATGACA +
Preference number: 4 (lower is better)
Translates to: KQGQHDPRPSFLAQVLSLQTHLD*QNYGMT
Trigger: TGTCATTCCATAGTTCTGTCAATCTAGATGAGTTTG...GAGGGACAGAACCTGAGCGAGAAAGGAGGGTCTAGGGTCATGTTGTCCTTGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp TTCCTGCTTCAGCTCAAGTGCTGTGTCCAGAGGCCATaGCTTTTCACTGTGACTTCTAACAGTAACACTGGA +
Preference number: 4 (lower is better)
Translates to: FLLQLKCCVQRP*LFTVTSNSNTG
Trigger: TCCAGTGTTACTGTTAGAAGTCACAGTGAAAAGCAATGGCCTCTGGACACAGCACTTGAGCTGAAGCAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp GAAAATGTCCTCTTCCTGTTCAACTGCCTGCTCACATaGCTGTCCATATCCTTGCTTGGGGAGCTTCAAATC +
Preference number: 4 (lower is better)
Translates to: ENVLFLFNCLLT*LSISLLGELQI
Trigger: GATTTGAAGCTCCCCAAGCAAGGATATGGACAGCAATGTGAGCAGGCAGTTGAACAGGAAGAGGACATTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR CCA 90 bp TGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCTCGTTTTCTAAGGTTGTaGCCACCAAATAGAGCCCAC +
Preference number: 4 (lower is better)
Translates to: WSGSGLPSMLTFSSCVCSRFLRL*PPNRAH
Trigger: GTGGGCTCTATTTGGTGGCCACAACCTTAGAAAACG...AGAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp AGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCTCTTAGCCGTATCTCTCCTTaGACGTCCACCTTCAACAAC +
Preference number: 4 (lower is better)
Translates to: SGSGLPSMLTFSSCVCSLSRISP*TSTFNN
Trigger: GTTGTTGAAGGTGGACGTCCAAGGAGAGATACGGCT...AAGAGAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CCA 90 bp TGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCTAACACCTCATTCTTTTaGCTCTGGTCAGAACGACTG +
Preference number: 4 (lower is better)
Translates to: WSGSGLPSMLTFSSCVCSNTSFF*LWSERL
Trigger: CAGTCGTTCTGACCAGAGCCAAAAGAATGAGGTGTT...AGAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp TGCTGCTGGGAATTGAACTTGGGGCCATATACTTGTTaGCAAAGCATTCTACCAATGACGCTATATTCTCCT +
Preference number: 4 (lower is better)
Translates to: CCWELNLGPYTC*QSILPMTLYSP
Trigger: AGGAGAATATAGCGTCATTGGTAGAATGCTTTGCAAACAAGTATATGGCCCCAAGTTCAATTCCCAGCAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
3UTR CAA 72 bp GTTATGCTGCTGGGAATTGAACTTGGGGCCATATACTaGTTTGCAAAGCATTCTACCAATGACGCTATATTC +
Preference number: 4 (lower is better)
Translates to: VMLLGIELGAIY*FAKHSTNDAIF
Trigger: GAATATAGCGTCATTGGTAGAATGCTTTGCAAACAAGTATATGGCCCCAAGTTCAATTCCCAGCAGCATAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CAA 90 bp ACAGGCCCCTCAGCCAGGCCCTCGCACGCCTGGCTTATTGAAGGTCCCTGGCTCGAGTTGAGAGCCTCCTaGTACCCGGGGCAGATCCCA +
Preference number: 5 (lower is better)
Translates to: TGPSARPSHAWLIEGPWLELRAS*YPGQIP
Trigger: TGGGATCTGCCCCGGGTACAAGGAGGCTCTCAACTC...GAGCCAGGGACCTTCAATAAGCCAGGCGTGCGAGGGCCTGGCTGAGGGGCCTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS GCA 90 bp GGACTCGCCTCCAGGCAGTCCCGTCAGCTTCCGGTAGAAGAGCTCTaGCACATCACGACCACCACTGTCCCCGCGGAAGTCTTTATAGAT +
Preference number: 5 (lower is better)
Translates to: GLASRQSRQLPVEEL*HITTTTVPAEVFID
Trigger: ATCTATAAAGACTTCCGCGGGGACAGTGGTGGTCGTGATGTGGCAGAGCTCTTCTACCGGAAGCTGACGGGACTGCCTGGAGGCGAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019662.11
ENSMUST00000143241.8
ENSMUST00000151318.8
CDS-3UTR CAA 90 bp GCATGTGTGCCGAGGGAGTTCAAAGGAGAGGCTGGCAGGACCCAGCCCCAAGGGATGAGCGGATCCCCCTaGGAAGACAGAATGAAGAAC +
Preference number: 5 (lower is better)
Translates to: ACVPREFKGEAGRTQPQGMSGSP*EDRMKN
Trigger: GTTCTTCATTCTGTCTTCCAAGGGGGATCCGCTCAT...CCCTTGGGGCTGGGTCCTGCCAGCCTCTCCTTTGAACTCCCTCGGCACACATGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143241.8
CDS-3UTR CAA 90 bp ACTACTACCTCTCCTGTCACCACCACGGTTCCCAGCGTGCAGCCCATCGTCAAGCTGGGAAGGAAGCTCTaGAGCCGTATCTCTCCTTGG +
Preference number: 5 (lower is better)
Translates to: TTTSPVTTTVPSVQPIVKLGRKL*SRISPW
Trigger: CCAAGGAGAGATACGGCTCAAGAGCTTCCTTCCCAG...CTTGACGATGGGCTGCACGCTGGGAACCGTGGTGGTGACAGGAGAGGTAGTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS TCA 90 bp GGAGTTCGTAGACAAGCGCCACATTGCGTGAGATGGTTCCCTCATTaGGTGAGCCACAGTAGTCACCCAAGAGAGTGGCTAGCCGGGAAA +
Preference number: 5 (lower is better)
Translates to: GVRRQAPHCVRWFPH*VSHSSHPREWLAGK
Trigger: TTTCCCGGCTAGCCACTCTCTTGGGTGACTACTGTGGCTCACTCAATGAGGGAACCATCTCACGCAATGTGGCGCTTGTCTACGAACTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019662.11
ENSMUST00000151318.8
CDS-3UTR CAA 90 bp CAGGGCCCAGGCTGCTCTACAAGCTCAGCAGGTCAACAGGACCACACTCACCATGACCACAGCTTCAGTTaGGATGAAGTTCCTCAGCAT +
Preference number: 5 (lower is better)
Translates to: QGPGCSTSSAGQQDHTHHDHSFS*DEVPQH
Trigger: ATGCTGAGGAACTTCATCCAAACTGAAGCTGTGGTC...ATGGTGAGTGTGGTCCTGTTGACCTGCTGAGCTTGTAGAGCAGCCTGGGCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CAA 90 bp TGGGAGTGGAGGGCATGTGTCAACAGTAGATACCTGGAAAAGGATTCTGGGGGAAAGAGGCTGAAGGGCTaGCTGACCACAGCTTCAGTT +
Preference number: 5 (lower is better)
Translates to: WEWRACVNSRYLEKDSGGKRLKG*LTTASV
Trigger: AACTGAAGCTGTGGTCAGCAAGCCCTTCAGCCTCTT...TCCCCCAGAATCCTTTTCCAGGTATCTACTGTTGACACATGCCCTCCACTCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CAA 90 bp CTGGAGTGGCTCAGGTCTGCCTTCAATGTTAACATTTTCTTCCTGTGTCTGTTCGGCTGGCTGCGCTGCTaGGGGCCACTTTATTCTGCT +
Preference number: 5 (lower is better)
Translates to: LEWLRSAFNVNIFFLCLFGWLRC*GPLYSA
Trigger: AGCAGAATAAAGTGGCCCCAAGCAGCGCAGCCAGCC...GAACAGACACAGGAAGAAAATGTTAACATTGAAGGCAGACCTGAGCCACTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CAA 90 bp CTCTCATCTTTGTGGGAGGATACCAGCCCTTACTCTGCCTTCTCTACAGAAACAGAAAAGGCCGGAGAGTaGAGAGCCTCCTTGTACCCG +
Preference number: 5 (lower is better)
Translates to: LSSLWEDTSPYSAFSTETEKAGE*RASLYP
Trigger: CGGGTACAAGGAGGCTCTCAACTCTCCGGCCTTTTC...TGTTTCTGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAAGATGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CAA 90 bp CTCTCATCTTTGTGGGAGGATACCAGCCCTTACTCTGCCTTCTCTACAGAAACAGGAGAAGGTCCATGGTaGGGAAGTCCCTGCAAGCCA +
Preference number: 5 (lower is better)
Translates to: LSSLWEDTSPYSAFSTETGEGPW*GSPCKP
Trigger: TGGCTTGCAGGGACTTCCCAACCATGGACCTTCTCC...TGTTTCTGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAAGATGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CAA 90 bp AGGTCAGCTGCTGAGGGAGGAAATGTACCCAGGTTTGGGATAGCGTTTGTCATAATGAGCGGATCCCCCTaGGAAGACAGAATGAAGAAC +
Preference number: 5 (lower is better)
Translates to: RSAAEGGNVPRFGIAFVIMSGSP*EDRMKN
Trigger: GTTCTTCATTCTGTCTTCCAAGGGGGATCCGCTCAT...TATGACAAACGCTATCCCAAACCTGGGTACATTTCCTCCCTCAGCAGCTGACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CAA 90 bp CTTTTCACTGTGACTTCTAACAGTAACACTGGATGGGCTCCTCTCATCTTTGTGATGAATGTTGAGAGCTaGGCTCTTTGGGGGCAGGTC +
Preference number: 5 (lower is better)
Translates to: LFTVTSNSNTGWAPLIFVMNVES*ALWGQV
Trigger: GACCTGCCCCCAAAGAGCCAAGCTCTCAACATTCAT...CACAAAGATGAGAGGAGCCCATCCAGTGTTACTGTTAGAAGTCACAGTGAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CAA 90 bp CTCTCATCTTTGTGGGAGGATACCAGCCCTTACTCTGCCTTCTCTACAGAAACAAAACACCTCATTCTTTaGGCTCTGGTCAGAACGACT +
Preference number: 5 (lower is better)
Translates to: LSSLWEDTSPYSAFSTETKHLIL*ALVRTT
Trigger: AGTCGTTCTGACCAGAGCCAAAAGAATGAGGTGTTT...TGTTTCTGTAGAGAAGGCAGAGTAAGGGCTGGTATCCTCCCACAAAGATGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019662.11
CDS-3UTR CAA 90 bp GTTCCTCAGAATAAAAGTTGGATTTGTAAGTTTGTGAGCCTCCCGCATCACATAAGACGTTTTCTAAGGTaGTGGCCACCAAATAGAGCC +
Preference number: 5 (lower is better)
Translates to: VPQNKSWICKFVSLPHHIRRFLR*WPPNRA
Trigger: GGCTCTATTTGGTGGCCACAACCTTAGAAAACGTCT...TATGTGATGCGGGAGGCTCACAAACTTACAAATCCAACTTTTATTCTGAGGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019662.11
ENSMUST00000143241.8
CDS GCA 72 bp TCCAGGCAGTCCCGTCAGCTTCCGGTAGAAGAGCTCTaGCACATCACGACCACCACTGTCCCCGCGGAAGTC +
Preference number: 6 (lower is better)
Translates to: SRQSRQLPVEEL*HITTTTVPAEV
Trigger: GACTTCCGCGGGGACAGTGGTGGTCGTGATGTGGCAGAGCTCTTCTACCGGAAGCTGACGGGACTGCCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019662.11
ENSMUST00000143241.8
ENSMUST00000151318.8
CDS TCA 72 bp AGAGAGTGGCTAGCCGGGAAAGCAGCTCCAGAAGGCTaGAAGGAGAGACGTTTTCTAAGGTTGTGGCCACCA +
Preference number: 6 (lower is better)
Translates to: REWLAGKAAPEG*KERRFLRLWPP
Trigger: TGGTGGCCACAACCTTAGAAAACGTCTCTCCTTTCAGCCTTCTGGAGCTGCTTTCCCGGCTAGCCACTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019662.11
ENSMUST00000151318.8
CDS TCA 72 bp AGACAAGCGCCACATTGCGTGAGATGGTTCCCTCATTaGGTGAGCCACAGTAGTCACCCAAGAGAGTGGCTA +
Preference number: 6 (lower is better)
Translates to: RQAPHCVRWFPH*VSHSSHPREWL
Trigger: TAGCCACTCTCTTGGGTGACTACTGTGGCTCACTCAATGAGGGAACCATCTCACGCAATGTGGCGCTTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019662.11
ENSMUST00000151318.8
CDS CAA 72 bp AATCCAACACTGCTGAGGTCAAAGAGGCTGAAGGGCTaGCTGACCACAGCTTCAGTTTGGATGAAGTTCCTC +
Preference number: 6 (lower is better)
Translates to: NPTLLRSKRLKG*LTTASVWMKFL
Trigger: GAGGAACTTCATCCAAACTGAAGCTGTGGTCAGCAAGCCCTTCAGCCTCTTTGACCTCAGCAGTGTTGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019662.11
ENSMUST00000151318.8
CDS CAA 90 bp GCTGAGGTCAAAGAGGCTGAAGGGCTTGCTGACCACAGCTTCAGTTaGGATGAAGTTCCTCAGCATTTCTGTGGATGTAGTCTGCACATA +
Preference number: 6 (lower is better)
Translates to: AEVKEAEGLADHSFS*DEVPQHFCGCSLHI
Trigger: TATGTGCAGACTACATCCACAGAAATGCTGAGGAACTTCATCCAAACTGAAGCTGTGGTCAGCAAGCCCTTCAGCCTCTTTGACCTCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019662.11
ENSMUST00000151318.8