RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AP4E1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001998

Ensembl transcript IDs: ENSMUST00000002063.15, ENSMUST00000110393.2, ENSMUST00000110394.8, ENSMUST00000142740.2, ENSMUST00000175663.8, ENSMUST00000177372.8

Found 234 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGCTGGAGGCCAGGAGAAGGCAGGGCGTTGGACTCCCCTGCAGTTaGTGGGTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCA +
Preference number: 1 (lower is better)
Translates to: WLEARRRQGVGLPCS*WVLETELGSSRRAA
Trigger: TGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATACCCACCAACTGCAGGGGAGTCCAACGCCCTGCCTTCTCCTGGCCTCCAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
3UTR TCA 90 bp GGCTTGGTCTACATTCTCCACTGTTGCACCCTCTGCAGGAACATGTaGGGCTTCCGGTTTATCACCAGTTCCACTCTCCTTCTTGGGCAG +
Preference number: 1 (lower is better)
Translates to: GLVYILHCCTLCRNM*GFRFITSSTLLLGQ
Trigger: CTGCCCAAGAAGGAGAGTGGAACTGGTGATAAACCGGAAGCCTCACATGTTCCTGCAGAGGGTGCAACAGTGGAGAATGTAGACCAAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR GCA 90 bp CTGAGAGAGCTGTTCCTCTTGGCGCTGGTGATGGGGCTTATAAGGTaGTGCTCCCTGACTGAGTCCTTCAGCCACAAAACCATCCAGAAA +
Preference number: 1 (lower is better)
Translates to: LRELFLLALVMGLIR*CSLTESFSHKTIQK
Trigger: TTTCTGGATGGTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR CCA 90 bp GAACATGTGAGGCTTCCGGTTTATCACCAGTTCCACTCTCCTTCTTaGGCAGATAGCCCTCTTTACCCCATAATTTCTTTATCCCTTCCA +
Preference number: 1 (lower is better)
Translates to: EHVRLPVYHQFHSPS*ADSPLYPIISLSLP
Trigger: TGGAAGGGATAAAGAAATTATGGGGTAAAGAGGGCTATCTGCCCAAGAAGGAGAGTGGAACTGGTGATAAACCGGAAGCCTCACATGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR TCA 90 bp ACCACCACCTGGCCTCCTCCTCAGCATCTTTACAGCAAGTATTGGTaGGATAACGTAAAACCAGAGTGCCTGACCACTAAGAATAACTTA +
Preference number: 1 (lower is better)
Translates to: TTTWPPPQHLYSKYW*DNVKPECLTTKNNL
Trigger: TAAGTTATTCTTAGTGGTCAGGCACTCTGGTTTTACGTTATCTCACCAATACTTGCTGTAAAGATGCTGAGGAGGAGGCCAGGTGGTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
3UTR GCA 90 bp GGCTGGAATCATTTCTCGAGGGAAAATCTGGCTGACAACAGTAAGTaGCATACATACTTCTACCAGATTAGTGCTCTGCAGGTCCTTTAC +
Preference number: 1 (lower is better)
Translates to: GWNHFSRENLADNSK*HTYFYQISALQVLY
Trigger: GTAAAGGACCTGCAGAGCACTAATCTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGCCAGATTTTCCCTCGAGAAATGATTCCAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR TCA 90 bp GGATGCATTACATCTCCTCCCACTGAAAACACAGCATTCATTGTCTaGATAAACCACACGTTGTCAGGAGCATATTTCTCAGCCAGCTCA +
Preference number: 1 (lower is better)
Translates to: GCITSPPTENTAFIV*INHTLSGAYFSASS
Trigger: TGAGCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
3UTR CCA 90 bp GTGGTCGGAGCAGAAACAGTTGCCTTCAGACTACTCAGTTCCTGCTaGATTAATTTCTCTTCTTCTTGCCCTCTCATACAAATTAGCAAC +
Preference number: 1 (lower is better)
Translates to: VVGAETVAFRLLSSC*INFSSSCPLIQISN
Trigger: GTTGCTAATTTGTATGAGAGGGCAAGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCGACCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR TCA 90 bp CTGTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTaGGAATATCTGGATGCATTACATCTCCTCCCACTGAAAACACAG +
Preference number: 1 (lower is better)
Translates to: LFHHQNLLLAVSGSC*EYLDALHLLPLKTQ
Trigger: CTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
3UTR GCA 90 bp AGCCCTCTTTACCCCATAATTTCTTTATCCCTTCCATCTTCAAACTaGTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAGATATAT +
Preference number: 1 (lower is better)
Translates to: SPLYPIISLSLPSSN*LSLSALSRHCFQIY
Trigger: ATATATCTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATGGAAGGGATAAAGAAATTATGGGGTAAAGAGGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR CCA 90 bp TCTATTAGTGGAAGAACGGCTGGAATCATTTCTCGAGGGAAAATCTaGCTGACAACAGTAAGTGCCATACATACTTCTACCAGATTAGTG +
Preference number: 1 (lower is better)
Translates to: SISGRTAGIISRGKI*LTTVSAIHTSTRLV
Trigger: CACTAATCTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGCCAGATTTTCCCTCGAGAAATGATTCCAGCCGTTCTTCCACTAATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR CCA 90 bp TTAATTTCTCAACTAAGGGAGAAGAATGAGCTTGAGGTGTCAACTTaGTTACCGCAGCAAACAACCATGCTTTCGTTTCTGAAGAAATGG +
Preference number: 1 (lower is better)
Translates to: LISQLREKNELEVST*LPQQTTMLSFLKKW
Trigger: CCATTTCTTCAGAAACGAAAGCATGGTTGTTTGCTGCGGTAACCAAGTTGACACCTCAAGCTCATTCTTCTCCCTTAGTTGAGAAATTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR GCA 90 bp GCTCTTCATAAGCTCTGTATTTTCATGCAGATGTTTCAATTCAAATaGATGCTGTCTCAGACAAGTATTCAAGGATACAGTGAATTCTTG +
Preference number: 1 (lower is better)
Translates to: ALHKLCIFMQMFQFK*MLSQTSIQGYSEFL
Trigger: CAAGAATTCACTGTATCCTTGAATACTTGTCTGAGACAGCATGCATTTGAATTGAAACATCTGCATGAAAATACAGAGCTTATGAAGAGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR CAA 90 bp TGCCACATGTGTGCAGGTGGCTGGAGGCCAGGAGAAGGCAGGGCGTaGGACTCCCCTGCAGTTGGTGGGTATTGGAAACTGAGCTCGGGT +
Preference number: 2 (lower is better)
Translates to: CHMCAGGWRPGEGRA*DSPAVGGYWKLSSG
Trigger: ACCCGAGCTCAGTTTCCAATACCCACCAACTGCAGGGGAGTCCAACGCCCTGCCTTCTCCTGGCCTCCAGCCACCTGCACACATGTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
3UTR-3UTR TCA 90 bp AGCCCTGTCTCGGCACTGTTTCCAGATATATCAGAGCCCAGGGAAATGCCAGCCGTGCTGCTCCCTGACTaGGTCCTTCAGCCACAAAAC +
Preference number: 2 (lower is better)
Translates to: SPVSALFPDISEPREMPAVLLPD*VLQPQN
Trigger: GTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCAC...GGCTGGCATTTCCCTGGGCTCTGATATATCTGGAAACAGTGCCGAGACAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR CAA 90 bp GAGCTTGGTCCTTTCTGGTCGTGGCTTGGTCTACATTCTCCACTGTaGCACCCTCTGCAGGAACATGTGAGGCTTCCGGTTTATCACCAG +
Preference number: 2 (lower is better)
Translates to: ELGPFWSWLGLHSPL*HPLQEHVRLPVYHQ
Trigger: CTGGTGATAAACCGGAAGCCTCACATGTTCCTGCAGAGGGTGCAACAGTGGAGAATGTAGACCAAGCCACGACCAGAAAGGACCAAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR CAA 90 bp CAGCTGCTTTTCTTTCTCCTCTGTAGAAGGGATATGGCCTTGAGCTaGGTCCTTTCTGGTCGTGGCTTGGTCTACATTCTCCACTGTTGC +
Preference number: 2 (lower is better)
Translates to: QLLFFLLCRRDMALS*VLSGRGLVYILHCC
Trigger: GCAACAGTGGAGAATGTAGACCAAGCCACGACCAGAAAGGACCAAGCTCAAGGCCATATCCCTTCTACAGAGGAGAAAGAAAAGCAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR-3UTR GCA 90 bp TCAAACTGCTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAGATATATCAGGGGCTTATAAGGTGCTaGTCCCTGACTGAGTCCTTC +
Preference number: 2 (lower is better)
Translates to: SNCLSLSALSRHCFQIYQGLIRC*SLTESF
Trigger: GAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCC...CTGATATATCTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR-3UTR TCA 90 bp AAGTTGCTGAGAATATCTGGATGCATTACATCTCCTCCCACTGAAAACACAGCAGTGCTGCTCCCTGACTaGGTCCTTCAGCCACAAAAC +
Preference number: 2 (lower is better)
Translates to: KLLRISGCITSPPTENTAVLLPD*VLQPQN
Trigger: GTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCAC...TGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCTCAGCAACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR-3UTR TCA 90 bp TCAAACTGCTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAGATATATCAGATGGTTATCTGGTGTTaGAGAGCCAGAGAAGGATCC +
Preference number: 2 (lower is better)
Translates to: SNCLSLSALSRHCFQIYQMVIWC*RAREGS
Trigger: GGATCCTTCTCTGGCTCTTCAACACCAGATAACCAT...CTGATATATCTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR-3UTR CCA 90 bp GCTGGAATCATTTCTCGAGGGAAAATCTGGCTGACAACAGTAAGTGCCATACATTCGTTTTCAGTGTCGTaGTCGGAGCAGAAACAGTTG +
Preference number: 2 (lower is better)
Translates to: AGIISRGKIWLTTVSAIHSFSVS*SEQKQL
Trigger: CAACTGTTTCTGCTCCGACCACGACACTGAAAACGA...ATGTATGGCACTTACTGTTGTCAGCCAGATTTTCCCTCGAGAAATGATTCCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR-3UTR TCA 90 bp GTTGATCTTCTGTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCGAGACTGTCGTCCAGTaGAGCCAGATGAAGAAAATG +
Preference number: 2 (lower is better)
Translates to: VDLLFHHQNLLLAVSGSCETVVQ*SQMKKM
Trigger: CATTTTCTTCATCTGGCTTCACTGGACGACAGTCTC...GCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAGAAGATCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR-3UTR GCA 90 bp GCTCTGCAGGTCCTTTACCACTGTATTCACAAGGAGAAGCAAAAGTTCATGACTTTCTCTTCTCCATGCTaGAGGCATTTACACTGCACT +
Preference number: 2 (lower is better)
Translates to: ALQVLYHCIHKEKQKFMTFSSPC*RHLHCT
Trigger: AGTGCAGTGTAAATGCCTGCAGCATGGAGAAGAGAA...AGTCATGAACTTTTGCTTCTCCTTGTGAATACAGTGGTAAAGGACCTGCAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR-3UTR GCA 90 bp GCTGGAATCATTTCTCGAGGGAAAATCTGGCTGACAACAGTAAGTGCCATACATTGTTTCTCTTCTCCATaGTGCAGGCATTTACACTGC +
Preference number: 2 (lower is better)
Translates to: AGIISRGKIWLTTVSAIHCFSSP*CRHLHC
Trigger: GCAGTGTAAATGCCTGCAGCATGGAGAAGAGAAACA...ATGTATGGCACTTACTGTTGTCAGCCAGATTTTCCCTCGAGAAATGATTCCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR-3UTR GCA 90 bp TCCATCTTCAAACTGCTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAGATGAACAAATTTTCCAATaGACTTGGCAGCCTTCTCAA +
Preference number: 2 (lower is better)
Translates to: SIFKLLVSFSPVSALFPDEQIFQ*TWQPSQ
Trigger: TTGAGAAGGCTGCCAAGTGCATTGGAAAATTTGTTC...ATCTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR-3UTR CCA 90 bp CACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGACACAGTTTCTTaGGGATCATTCTTAGCAGGA +
Preference number: 2 (lower is better)
Translates to: HRFSLQQVLHSKAKCDSGDDTVS*GSFLAG
Trigger: TCCTGCTAAGAATGATCCCCAAGAAACTGTGTCATC...ACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
3UTR CAA 90 bp TACATTCCTTCATCGTTTTCAGTGTCGTGGTCGGAGCAGAAACAGTaGCCTTCAGACTACTCAGTTCCTGCTGGATTAATTTCTCTTCTT +
Preference number: 2 (lower is better)
Translates to: YIPSSFSVSWSEQKQ*PSDYSVPAGLISLL
Trigger: AAGAAGAGAAATTAATCCAGCAGGAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCGACCACGACACTGAAAACGATGAAGGAATGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR CAA 90 bp CCTCTTTACCCCATAATTTCTTTATCCCTTCCATCTTCAAACTGCTaGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAGATATATCAG +
Preference number: 2 (lower is better)
Translates to: PLYPIISLSLPSSNC*SLSALSRHCFQIYQ
Trigger: CTGATATATCTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATGGAAGGGATAAAGAAATTATGGGGTAAAGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR-3UTR TCA 90 bp GACTGTCGTCCAGTGAAGCCAGATGAAGAAAATGATAGTCCATATGGTTCAAAATTGAGAACCTTTTCCTaGGAGAGCTGTTCCTCTTGG +
Preference number: 2 (lower is better)
Translates to: DCRPVKPDEENDSPYGSKLRTFS*ESCSSW
Trigger: CCAAGAGGAACAGCTCTCTCAGGAAAAGGTTCTCAA...TTTTGAACCATATGGACTATCATTTTCTTCATCTGGCTTCACTGGACGACAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR-3UTR TCA 90 bp AGAATATCTGGATGCATTACATCTCCTCCCACTGAAAACACAGCATTCATTGTCTTGAGAACCTTTTCCTaGGAGAGCTGTTCCTCTTGG +
Preference number: 2 (lower is better)
Translates to: RISGCITSPPTENTAFIVLRTFS*ESCSSW
Trigger: CCAAGAGGAACAGCTCTCTCAGGAAAAGGTTCTCAA...GACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR-3UTR CCA 90 bp AAGATAAAGACGCATCTGCCACTATGTCTTCACAATTCTGAGCACCCTGAAGCACTAGGCATTCAATTATaGTTATCTGGTGTTGAAGAG +
Preference number: 2 (lower is better)
Translates to: KIKTHLPLCLHNSEHPEALGIQL*LSGVEE
Trigger: CTCTTCAACACCAGATAACCATAATTGAATGCCTAG...TGCTTCAGGGTGCTCAGAATTGTGAAGACATAGTGGCAGATGCGTCTTTATCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR-3UTR GCA 90 bp TATATAAGTCTCACCATACATTCCTTCATCGTTTTCAGTGTCGTGGTCGGAGCAAATTTCTCTTCTTCTTaGCCTCTCATACAAATTAGC +
Preference number: 2 (lower is better)
Translates to: YISLTIHSFIVFSVVVGANFSSS*PLIQIS
Trigger: GCTAATTTGTATGAGAGGGCAAGAAGAAGAGAAATT...TGCTCCGACCACGACACTGAAAACGATGAAGGAATGTATGGTGAGACTTATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR-3UTR GCA 90 bp AGATTAGTGCTCTGCAGGTCCTTTACCACTGTATTCACAAGGAGAAGCAAAAGTTTGGGCCAACTTGATTaGATGTATATAACCAAAAGA +
Preference number: 2 (lower is better)
Translates to: RLVLCRSFTTVFTRRSKSLGQLD*MYITKR
Trigger: TCTTTTGGTTATATACATGCAATCAAGTTGGCCCAA...ACTTTTGCTTCTCCTTGTGAATACAGTGGTAAAGGACCTGCAGAGCACTAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR GCA 72 bp CCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTaGATCACCACCACCACCACCACCTGGCCTCCTCCT +
Preference number: 3 (lower is better)
Translates to: PASASRVLGLKA*ITTTTTTWPPP
Trigger: AGGAGGAGGCCAGGTGGTGGTGGTGGTGGTGATGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
3UTR CCA 72 bp GTCTGTGTGAATATATGCCACATGTGTGCAGGTGGCTaGAGGCCAGGAGAAGGCAGGGCGTTGGACTCCCCT +
Preference number: 3 (lower is better)
Translates to: VCVNICHMCAGG*RPGEGRALDSP
Trigger: AGGGGAGTCCAACGCCCTGCCTTCTCCTGGCCTCCAGCCACCTGCACACATGTGGCATATATTCACACAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
3UTR-3UTR CAA 90 bp CACTGTTTCCAGATATATCAGAGCCCAGGGAAATGCCAGCCGGAGACTGTCGTCAGAGAGCTGTTCCTCTaGGCGCTGGTGATGGGGCTT +
Preference number: 3 (lower is better)
Translates to: HCFQIYQSPGKCQPETVVRELFL*ALVMGL
Trigger: AAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCT...GACGACAGTCTCCGGCTGGCATTTCCCTGGGCTCTGATATATCTGGAAACAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR GCA 72 bp CTGTTCCTCTTGGCGCTGGTGATGGGGCTTATAAGGTaGTGCTCCCTGACTGAGTCCTTCAGCCACAAAACC +
Preference number: 3 (lower is better)
Translates to: LFLLALVMGLIR*CSLTESFSHKT
Trigger: GGTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR GCA 72 bp TTCCTCTTGGCGCTGGTGATGGGGCTTATAAGGTGCTaGTCCCTGACTGAGTCCTTCAGCCACAAAACCATC +
Preference number: 3 (lower is better)
Translates to: FLLALVMGLIRC*SLTESFSHKTI
Trigger: GATGGTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR CCA 72 bp GGATTAAAGGCGTGCATCACCACCACCACCACCACCTaGCCTCCTCCTCAGCATCTTTACAGCAAGTATTGG +
Preference number: 3 (lower is better)
Translates to: GLKACITTTTTT*PPPQHLYSKYW
Trigger: CCAATACTTGCTGTAAAGATGCTGAGGAGGAGGCCAGGTGGTGGTGGTGGTGGTGATGCACGCCTTTAATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
3UTR CCA 72 bp AAGGGATATGGCCTTGAGCTTGGTCCTTTCTGGTCGTaGCTTGGTCTACATTCTCCACTGTTGCACCCTCTG +
Preference number: 3 (lower is better)
Translates to: KGYGLELGPFWS*LGLHSPLLHPL
Trigger: CAGAGGGTGCAACAGTGGAGAATGTAGACCAAGCCACGACCAGAAAGGACCAAGCTCAAGGCCATATCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR-3UTR CAA 90 bp TCAAACTGCTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAGATATATCAGAGAGAGCTGTTCCTCTaGGCGCTGGTGATGGGGCTT +
Preference number: 3 (lower is better)
Translates to: SNCLSLSALSRHCFQIYQRELFL*ALVMGL
Trigger: AAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCT...CTGATATATCTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR CCA 72 bp AGCTGGCTATGCTGTCACACCTATAATCCTGGCATTTaGTGGCAGAGGCAGGGGCATCACAAGTTTGAGTCT +
Preference number: 3 (lower is better)
Translates to: SWLCCHTYNPGI*WQRQGHHKFES
Trigger: AGACTCAAACTTGTGATGCCCCTGCCTCTGCCACCAAATGCCAGGATTATAGGTGTGACAGCATAGCCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
3UTR TCA 72 bp AGCCCAGGGAAATGCCAGCCGGAGACTGTCGTCCAGTaGAGCCAGATGAAGAAAATGATAGTCCATATGGTT +
Preference number: 3 (lower is better)
Translates to: SPGKCQPETVVQ*SQMKKMIVHMV
Trigger: AACCATATGGACTATCATTTTCTTCATCTGGCTTCACTGGACGACAGTCTCCGGCTGGCATTTCCCTGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR TCA 72 bp TACATTCTCCACTGTTGCACCCTCTGCAGGAACATGTaGGGCTTCCGGTTTATCACCAGTTCCACTCTCCTT +
Preference number: 3 (lower is better)
Translates to: YILHCCTLCRNM*GFRFITSSTLL
Trigger: AAGGAGAGTGGAACTGGTGATAAACCGGAAGCCTCACATGTTCCTGCAGAGGGTGCAACAGTGGAGAATGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR GCA 72 bp AGAGCCGAGAGCACAGATTTTCCTTACAGCAGGTTCTaGACTCCAAAGCCAAGTGTGATTCAGGTGATGAGC +
Preference number: 3 (lower is better)
Translates to: RAESTDFPYSRF*TPKPSVIQVMS
Trigger: GCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTGCTCTCGGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
3UTR GCA 72 bp GGTCCTAGCCCAACAAACAGCGATGATGCCAACAGCTaGTTTTCTTTCTCCTCTGTAGAAGGGATATGGCCT +
Preference number: 3 (lower is better)
Translates to: GPSPTNSDDANS*FSFSSVEGIWP
Trigger: AGGCCATATCCCTTCTACAGAGGAGAAAGAAAAGCAGCTGTTGGCATCATCGCTGTTTGTTGGGCTAGGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR TCA 72 bp TACCGAAGCTGTAGAAGGGGCACCAGCTTTCTTCAGTaGGTAGCCACCCATGTTCATGCAAGCAATTCTATC +
Preference number: 3 (lower is better)
Translates to: YRSCRRGTSFLQ*VATHVHASNSI
Trigger: GATAGAATTGCTTGCATGAACATGGGTGGCTACTCACTGAAGAAAGCTGGTGCCCCTTCTACAGCTTCGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
3UTR TCA 72 bp TGCTTTTCTTTCTCCTCTGTAGAAGGGATATGGCCTTaGGCTTGGTCCTTTCTGGTCGTGGCTTGGTCTACA +
Preference number: 3 (lower is better)
Translates to: CFSFSSVEGIWP*AWSFLVVAWST
Trigger: TGTAGACCAAGCCACGACCAGAAAGGACCAAGCTCAAGGCCATATCCCTTCTACAGAGGAGAAAGAAAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR-3UTR CAA 90 bp TTTCCAGATATATCAGAGCCCAGGGAAATGCCAGCCGGAGACTGTCGTCCAGTGAATTTTCCAATGCACTaGGCAGCCTTCTCAAGTAAT +
Preference number: 3 (lower is better)
Translates to: FPDISEPREMPAGDCRPVNFPMH*AAFSSN
Trigger: ATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAATT...CACTGGACGACAGTCTCCGGCTGGCATTTCCCTGGGCTCTGATATATCTGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR TCA 72 bp TGGCCTCCTCCTCAGCATCTTTACAGCAAGTATTGGTaGGATAACGTAAAACCAGAGTGCCTGACCACTAAG +
Preference number: 3 (lower is better)
Translates to: WPPPQHLYSKYW*DNVKPECLTTK
Trigger: CTTAGTGGTCAGGCACTCTGGTTTTACGTTATCTCACCAATACTTGCTGTAAAGATGCTGAGGAGGAGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
3UTR-3UTR CAA 90 bp AGAACGGCTGGAATCATTTCTCGAGGGAAAATCTGGCTGACAACAGTAAGTGCCACCTTTAAAGGCATCTaGTTTCTCTTCTCCATGCTG +
Preference number: 3 (lower is better)
Translates to: RTAGIISRGKIWLTTVSATFKGI*FLFSML
Trigger: CAGCATGGAGAAGAGAAACAAGATGCCTTTAAAGGT...GGCACTTACTGTTGTCAGCCAGATTTTCCCTCGAGAAATGATTCCAGCCGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR TCA 72 bp CATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTaGGAATATCTGGATGCATTACATCTCCTCCCACTG +
Preference number: 3 (lower is better)
Translates to: HQNLLLAVSGSC*EYLDALHLLPL
Trigger: CAGTGGGAGGAGATGTAATGCATCCAGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
3UTR GCA 72 bp CATTTCTCGAGGGAAAATCTGGCTGACAACAGTAAGTaGCATACATACTTCTACCAGATTAGTGCTCTGCAG +
Preference number: 3 (lower is better)
Translates to: HFSRENLADNSK*HTYFYQISALQ
Trigger: CTGCAGAGCACTAATCTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGCCAGATTTTCCCTCGAGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR GCA 72 bp TACCCCATAATTTCTTTATCCCTTCCATCTTCAAACTaGTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTC +
Preference number: 3 (lower is better)
Translates to: YPIISLSLPSSN*LSLSALSRHCF
Trigger: GAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATGGAAGGGATAAAGAAATTATGGGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
3UTR TCA 72 bp ACATCTCCTCCCACTGAAAACACAGCATTCATTGTCTaGATAAACCACACGTTGTCAGGAGCATATTTCTCA +
Preference number: 3 (lower is better)
Translates to: TSPPTENTAFIV*INHTLSGAYFS
Trigger: TGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
3UTR-3UTR CAA 90 bp ATGTTTCAATTCAAATGCATGCTGTCTCAGACAAGTATTCAAGGATACAGTGAATATGGTTATCTGGTGTaGAAGAGCCAGAGAAGGATC +
Preference number: 3 (lower is better)
Translates to: MFQFKCMLSQTSIQGYSEYGYLV*KSQRRI
Trigger: GATCCTTCTCTGGCTCTTCAACACCAGATAACCATA...TTCACTGTATCCTTGAATACTTGTCTGAGACAGCATGCATTTGAATTGAAACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
3UTR GCA 72 bp TTTAAACCTTTAAAGGCATCTTGTTTCTCTTCTCCATaGTGCAGGCATTTACACTGCACTGTAGTTACTTAT +
Preference number: 3 (lower is better)
Translates to: FKPLKASCFSSP*CRHLHCTVVTY
Trigger: ATAAGTAACTACAGTGCAGTGTAAATGCCTGCAGCATGGAGAAGAGAAACAAGATGCCTTTAAAGGTTTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR TCA 72 bp TTAATAAAAGAAGACGCCAGAACAGTATTAGGCACATaGGCACAACTTCTCTTCCAGGAAGATAAATTATCT +
Preference number: 3 (lower is better)
Translates to: LIKEDARTVLGT*AQLLFQEDKLS
Trigger: AGATAATTTATCTTCCTGGAAGAGAAGTTGTGCTCATGTGCCTAATACTGTTCTGGCGTCTTCTTTTATTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
3UTR CAA 72 bp AGGCAGGGCGTTGGACTCCCCTGCAGTTGGTGGGTATaGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: RQGVGLPCSWWV*ETELGSSRRAA
Trigger: TGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATACCCACCAACTGCAGGGGAGTCCAACGCCCTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCAGAAGAGCCCCGGCAGTaGGGTCAGCGTCCTCTCCAC +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESEEPRQ*GQRPLH
Trigger: GTGGAGAGGACGCTGACCGCACTGCCGGGGCTCTTC...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp TTTCCAGATATATCAGAGCCCAGGGAAATGCCAGCCGGAGACTGTCGTCCAGTGCCTGGAGAAGAAGGGTaGTCTGGAGGCCGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: FPDISEPREMPAGDCRPVPGEEG*SGGRRS
Trigger: GGACCTGCGGCCTCCAGAGCACCCTTCTTCTCCAGG...CACTGGACGACAGTCTCCGGCTGGCATTTCCCTGGGCTCTGATATATCTGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCCCTGGAGAAGAAGGGTaGTCTGGAGGCCGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: VLETELGSSRRAASTLNCPGEEG*SGGRRS
Trigger: GGACCTGCGGCCTCCAGAGCACCCTTCTTCTCCAGG...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR CCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCAGCAGGTCCTCCCAGCTaGTTCTGCAGGAAGAGCCCC +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESAGPPS*FCRKSP
Trigger: GGGGCTCTTCCTGCAGAACCAGCTGGGAGGACCTGC...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp TTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTGAAGAGCCCCGGCAGTaGGGTCAGCGTCCTCTCCAC +
Preference number: 4 (lower is better)
Translates to: LQQVLHSKAKCDSGDEQSEEPRQ*GQRPLH
Trigger: GTGGAGAGGACGCTGACCGCACTGCCGGGGCTCTTC...AGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp TACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTCCCTGGAGAAGAAGGGTaGTCTGGAGGCCGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: YSRFCTPKPSVIQVMSSLPGEEG*SGGRRS
Trigger: GGACCTGCGGCCTCCAGAGCACCCTTCTTCTCCAGG...GAGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp CCTTCCATCTTCAAACTGCTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAGCAGGTCCTCCCAGCTaGTTCTGCAGGAAGAGCCCC +
Preference number: 4 (lower is better)
Translates to: PSIFKLLVSFSPVSALFPAGPPS*FCRKSP
Trigger: GGGGCTCTTCCTGCAGAACCAGCTGGGAGGACCTGC...TGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATGGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCGCACGCTGTGGTAACTaGACTCTACCGGGAGCTTCC +
Preference number: 4 (lower is better)
Translates to: VLETELGSSRRAASTLNCARCGN*TLPGAS
Trigger: GGAAGCTCCCGGTAGAGTTCAGTTACCACAGCGTGC...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR TCA 90 bp GATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCAGCCTTGTGCTGCTCCCTGACTaGGTCCTTCAGCCACAAAAC +
Preference number: 4 (lower is better)
Translates to: DEQSLCPLHQSRELSLSLVLLPD*VLQPQN
Trigger: GTTTTGTGGCTGAAGGACTCAGTCAGGGAGCAGCAC...AAGGCTGAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp TGGCTGACAACAGTAAGTGCCATACATACTTCTACCAGATTAGTGCTCTGCAGGGAAGAGCCCCGGCAGTaGGGTCAGCGTCCTCTCCAC +
Preference number: 4 (lower is better)
Translates to: WLTTVSAIHTSTRLVLCREEPRQ*GQRPLH
Trigger: GTGGAGAGGACGCTGACCGCACTGCCGGGGCTCTTC...CCTGCAGAGCACTAATCTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR CAA 72 bp GATATGGCCTTGAGCTTGGTCCTTTCTGGTCGTGGCTaGGTCTACATTCTCCACTGTTGCACCCTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: DMALSLVLSGRG*VYILHCCTLCR
Trigger: CCTGCAGAGGGTGCAACAGTGGAGAATGTAGACCAAGCCACGACCAGAAAGGACCAAGCTCAAGGCCATATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp TACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTCGCACGCTGTGGTAACTaGACTCTACCGGGAGCTTCC +
Preference number: 4 (lower is better)
Translates to: YSRFCTPKPSVIQVMSSLARCGN*TLPGAS
Trigger: GGAAGCTCCCGGTAGAGTTCAGTTACCACAGCGTGC...GAGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp GAGCCGAGAGCACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGAAGGCACAGGCAAGCTaGCACTCTCGAGCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: EPRAQIFLTAGSALQSQVKAQAS*HSRASQ
Trigger: CTGAGAAGCTCGAGAGTGTCAGCTTGCCTGTGCCTT...CACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTGCTCTCGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp TCAGGTGATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCGGGCTTATAAGGTGCTaGTCCCTGACTGAGTCCTTC +
Preference number: 4 (lower is better)
Translates to: SGDEQSLCPLHQSRELSLGLIRC*SLTESF
Trigger: GAAGGACTCAGTCAGGGAGCAGCACCTTATAAGCCC...GAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATCACCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp GATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGGCAGGTCCTCCCAGCTaGTTCTGCAGGAAGAGCCCC +
Preference number: 4 (lower is better)
Translates to: DFPYSRFCTPKPSVIQVMAGPPS*FCRKSP
Trigger: GGGGCTCTTCCTGCAGAACCAGCTGGGAGGACCTGC...CATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp GTTGATCTTCTGTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCGAAGAGCCCCGGCAGTaGGGTCAGCGTCCTCTCCAC +
Preference number: 4 (lower is better)
Translates to: VDLLFHHQNLLLAVSGSCEEPRQ*GQRPLH
Trigger: GTGGAGAGGACGCTGACCGCACTGCCGGGGCTCTTC...GCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAGAAGATCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp CGGCACTGTTTCCAGATATATCAGAGCCCAGGGAAATGCCAGCCGGAGACTGTCCGGAGCAGAAACAGTTaGCTTCAGACTACTCAGTTC +
Preference number: 4 (lower is better)
Translates to: RHCFQIYQSPGKCQPETVRSRNS*LQTTQF
Trigger: GAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCG...GACAGTCTCCGGCTGGCATTTCCCTGGGCTCTGATATATCTGGAAACAGTGCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp TTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTGCAAAGAGGCAGCCATaGCCCCAACATCTCTGTCAC +
Preference number: 4 (lower is better)
Translates to: LQQVLHSKAKCDSGDEQSAKRQP*PQHLCH
Trigger: GTGACAGAGATGTTGGGGTCATGGCTGCCTCTTTGC...AGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp CATTGTCTGAATAAACCACACGTTGTCAGGAGCATATTTCTCAGCCAGCTCAGCGCACGCTGTGGTAACTaGACTCTACCGGGAGCTTCC +
Preference number: 4 (lower is better)
Translates to: HCLNKPHVVRSIFLSQLSARCGN*TLPGAS
Trigger: GGAAGCTCCCGGTAGAGTTCAGTTACCACAGCGTGC...GCTGAGCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp AGAATATCTGGATGCATTACATCTCCTCCCACTGAAAACACAGCATTCATTGTCGAAGAGCCCCGGCAGTaGGGTCAGCGTCCTCTCCAC +
Preference number: 4 (lower is better)
Translates to: RISGCITSPPTENTAFIVEEPRQ*GQRPLH
Trigger: GTGGAGAGGACGCTGACCGCACTGCCGGGGCTCTTC...GACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp AGATTAGTGCTCTGCAGGTCCTTTACCACTGTATTCACAAGGAGAAGCAAAAGTCCTGGAGAAGAAGGGTaGTCTGGAGGCCGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: RLVLCRSFTTVFTRRSKSPGEEG*SGGRRS
Trigger: GGACCTGCGGCCTCCAGAGCACCCTTCTTCTCCAGG...ACTTTTGCTTCTCCTTGTGAATACAGTGGTAAAGGACCTGCAGAGCACTAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
CDS-3UTR CCA 90 bp TATATAAGTCTCACCATACATTCCTTCATCGTTTTCAGTGTCGTGGTCGGAGCAGCAGGTCCTCCCAGCTaGTTCTGCAGGAAGAGCCCC +
Preference number: 4 (lower is better)
Translates to: YISLTIHSFIVFSVVVGAAGPPS*FCRKSP
Trigger: GGGGCTCTTCCTGCAGAACCAGCTGGGAGGACCTGC...TGCTCCGACCACGACACTGAAAACGATGAAGGAATGTATGGTGAGACTTATATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
CDS-3UTR CCA 90 bp TCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTGAGAATATCTGGATGCATTGCAGGTCCTCCCAGCTaGTTCTGCAGGAAGAGCCCC +
Preference number: 4 (lower is better)
Translates to: SKPSASSLRKLLRISGCIAGPPS*FCRKSP
Trigger: GGGGCTCTTCCTGCAGAACCAGCTGGGAGGACCTGC...AATGCATCCAGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp GATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCAGCCTTAGTATTCTCAGGAGCTaGATCTGTAACCATGGTGCT +
Preference number: 4 (lower is better)
Translates to: DEQSLCPLHQSRELSLSLSILRS*ICNHGA
Trigger: AGCACCATGGTTACAGATTCAGCTCCTGAGAATACT...AAGGCTGAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp CCTTTCTGGTCGTGGCTTGGTCTACATTCTCCACTGTTGCACCCTCTGCAGGAAAGTATTCTCAGGAGCTaGATCTGTAACCATGGTGCT +
Preference number: 4 (lower is better)
Translates to: PFWSWLGLHSPLLHPLQESILRS*ICNHGA
Trigger: AGCACCATGGTTACAGATTCAGCTCCTGAGAATACT...TTCCTGCAGAGGGTGCAACAGTGGAGAATGTAGACCAAGCCACGACCAGAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCATGGTTATCTGGTGTTaGAGAGCCAGAGAAGGATCC +
Preference number: 4 (lower is better)
Translates to: VLETELGSSRRAASTLNCMVIWC*RAREGS
Trigger: GGATCCTTCTCTGGCTCTTCAACACCAGATAACCAT...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR TCA 90 bp AATATACAATCTCAAGATTCTGGCCCATCACACACACAAGGCATAATCTCTTCTCCCACCAGCCACATCTaGGCCAAGGCTGAGGGCGGA +
Preference number: 4 (lower is better)
Translates to: NIQSQDSGPSHTQGIISSPTSHI*AKAEGG
Trigger: TCCGCCCTCAGCCTTGGCTCAGATGTGGCTGGTGGG...AGAAGAGATTATGCCTTGTGTGTGTGATGGGCCAGAATCTTGAGATTGTATATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp GTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTGAGAATATCTCCTGGAGAAGAAGGGTaGTCTGGAGGCCGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: VSSSKPSASSLRKLLRISPGEEG*SGGRRS
Trigger: GGACCTGCGGCCTCCAGAGCACCCTTCTTCTCCAGG...AGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCCGGAGCAGAAACAGTTaGCTTCAGACTACTCAGTTC +
Preference number: 4 (lower is better)
Translates to: VLETELGSSRRAASTLNCRSRNS*LQTTQF
Trigger: GAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCG...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp TTTCCAGATATATCAGAGCCCAGGGAAATGCCAGCCGGAGACTGTCGTCCAGTGACCAGATTAGTGCTCTaGAGGTCCTTTACCACTGTA +
Preference number: 4 (lower is better)
Translates to: FPDISEPREMPAGDCRPVTRLVL*RSFTTV
Trigger: TACAGTGGTAAAGGACCTGCAGAGCACTAATCTGGT...CACTGGACGACAGTCTCCGGCTGGCATTTCCCTGGGCTCTGATATATCTGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp CCTTTCTGGTCGTGGCTTGGTCTACATTCTCCACTGTTGCACCCTCTGCAGGAAATCCTAAGGTATATGTaGAAAGAGGCAGCCATGACC +
Preference number: 4 (lower is better)
Translates to: PFWSWLGLHSPLLHPLQEILRYM*KEAAMT
Trigger: GGTCATGGCTGCCTCTTTGCACATATACCTTAGGAT...TTCCTGCAGAGGGTGCAACAGTGGAGAATGTAGACCAAGCCACGACCAGAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp TACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTCCGAGACCTGAATGCCTaGACTCAGGAGTTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: YSRFCTPKPSVIQVMSSLRDLNA*TQEFLP
Trigger: AGGAAGAAACTCCTGAGTGCAGGCATTCAGGTCTCG...GAGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp GAGCCGAGAGCACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGAGTCTCAGGTTCTGCTaGAGCTCTGTTAGGACAGAA +
Preference number: 4 (lower is better)
Translates to: EPRAQIFLTAGSALQSQVSLRFC*SSVRTE
Trigger: TTCTGTCCTAACAGAGCTGCAGCAGAACCTGAGACT...CACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTGCTCTCGGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCATCGTTTTCAGTGTCGTaGTCGGAGCAGAAACAGTTG +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESSFSVS*SEQKQL
Trigger: CAACTGTTTCTGCTCCGACCACGACACTGAAAACGA...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
3UTR CAA 72 bp CTGCTTTTCTTTCTCCTCTGTAGAAGGGATATGGCCTaGAGCTTGGTCCTTTCTGGTCGTGGCTTGGTCTAC +
Preference number: 4 (lower is better)
Translates to: LLFFLLCRRDMA*SLVLSGRGLVY
Trigger: GTAGACCAAGCCACGACCAGAAAGGACCAAGCTCAAGGCCATATCCCTTCTACAGAGGAGAAAGAAAAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp TTCCTCTTGGCGCTGGTGATGGGGCTTATAAGGTGCTGCTCCCTGACTGAGTCCCTTGATTGGGGGCAATaGGGTAAAATTTGTATAATG +
Preference number: 4 (lower is better)
Translates to: FLLALVMGLIRCCSLTESLDWGQ*GKICIM
Trigger: CATTATACAAATTTTACCTCATTGCCCCCAATCAAG...GGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCAGTATTCTCAGGAGCTaGATCTGTAACCATGGTGCT +
Preference number: 4 (lower is better)
Translates to: VLETELGSSRRAASTLNCSILRS*ICNHGA
Trigger: AGCACCATGGTTACAGATTCAGCTCCTGAGAATACT...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR TCA 90 bp TCAGGTGATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCAGCATCTGTGAACTCTaGGTCAGTTTTACTAGTGAC +
Preference number: 4 (lower is better)
Translates to: SGDEQSLCPLHQSRELSLSICEL*VSFTSD
Trigger: GTCACTAGTAAAACTGACTCAGAGTTCACAGATGCT...GAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATCACCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCAACCAGATTAGTGCTCTaGAGGTCCTTTACCACTGTA +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESTRLVL*RSFTTV
Trigger: TACAGTGGTAAAGGACCTGCAGAGCACTAATCTGGT...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCATCCTAAGGTATATGTaGAAAGAGGCAGCCATGACC +
Preference number: 4 (lower is better)
Translates to: VLETELGSSRRAASTLNCILRYM*KEAAMT
Trigger: GGTCATGGCTGCCTCTTTGCACATATACCTTAGGAT...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp CAGCCCTGTCTCGGCACTGTTTCCAGATATATCAGAGCCCAGGGAAATGCCAGCTTCCCGCCCACCACCTaGTTTAAAATTGTTACAAAA +
Preference number: 4 (lower is better)
Translates to: QPCLGTVSRYIRAQGNASFPPTT*FKIVTK
Trigger: TTTTGTAACAATTTTAAAGCAGGTGGTGGGCGGGAA...GCTGGCATTTCCCTGGGCTCTGATATATCTGGAAACAGTGCCGAGACAGGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp CTGACCTGTGCAAAGCAGAGCCGAGAGCACAGATTTTCCTTACAGCAGGTTCTGCTTCCATCTTCAAACTaGTTGTCTCTTTCAGCCCTG +
Preference number: 4 (lower is better)
Translates to: LTCAKQSREHRFSLQQVLLPSSN*LSLSAL
Trigger: CAGGGCTGAAAGAGACAAGCAGTTTGAAGATGGAAG...CAGAACCTGCTGTAAGGAAAATCTGTGCTCTCGGCTCTGCTTTGCACAGGTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp GATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCAGCCTTGATGATGCCAACAGCTaGTTTTCTTTCTCCTCTGTA +
Preference number: 4 (lower is better)
Translates to: DEQSLCPLHQSRELSLSLDDANS*FSFSSV
Trigger: TACAGAGGAGAAAGAAAAGCAGCTGTTGGCATCATC...AAGGCTGAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
3UTR CAA 72 bp TTCTTTCTCCTCTGTAGAAGGGATATGGCCTTGAGCTaGGTCCTTTCTGGTCGTGGCTTGGTCTACATTCTC +
Preference number: 4 (lower is better)
Translates to: FFLLCRRDMALS*VLSGRGLVYIL
Trigger: GAGAATGTAGACCAAGCCACGACCAGAAAGGACCAAGCTCAAGGCCATATCCCTTCTACAGAGGAGAAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp CCACAAAACCATCCAGAAAAGATAAAGACGCATCTGCCACTATGTCTTCACAATGCACGCTGTGGTAACTaGACTCTACCGGGAGCTTCC +
Preference number: 4 (lower is better)
Translates to: PQNHPEKIKTHLPLCLHNARCGN*TLPGAS
Trigger: GGAAGCTCCCGGTAGAGTTCAGTTACCACAGCGTGC...ATTGTGAAGACATAGTGGCAGATGCGTCTTTATCTTTTCTGGATGGTTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp GATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCAGCCTTACAGCATTCATTGTCTaGATAAACCACACGTTGTCA +
Preference number: 4 (lower is better)
Translates to: DEQSLCPLHQSRELSLSLTAFIV*INHTLS
Trigger: TGACAACGTGTGGTTTATTCAGACAATGAATGCTGT...AAGGCTGAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp TTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTGAGACTGTCGTCCAGTaGAGCCAGATGAAGAAAATG +
Preference number: 4 (lower is better)
Translates to: LQQVLHSKAKCDSGDEQSETVVQ*SQMKKM
Trigger: CATTTTCTTCATCTGGCTTCACTGGACGACAGTCTC...AGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp GATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCAGCCTTATGGAAAATTCCAGTTaGACAGAATGCGTATCCATC +
Preference number: 4 (lower is better)
Translates to: DEQSLCPLHQSRELSLSLMENSS*TECVSI
Trigger: GATGGATACGCATTCTGTTCAACTGGAATTTTCCAT...AAGGCTGAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp CTGACCTGTGCAAAGCAGAGCCGAGAGCACAGATTTTCCTTACAGCAGGTTCTGGCTGACAACAGTAAGTaGCATACATACTTCTACCAG +
Preference number: 4 (lower is better)
Translates to: LTCAKQSREHRFSLQQVLADNSK*HTYFYQ
Trigger: CTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGC...CAGAACCTGCTGTAAGGAAAATCTGTGCTCTCGGCTCTGCTTTGCACAGGTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCAGCTGACAACAGTAAGTaGCATACATACTTCTACCAG +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESADNSK*HTYFYQ
Trigger: CTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGC...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp CACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTCGAAGTCTCAGGTTCTaGTGCAGCTCTGTTAGGACA +
Preference number: 4 (lower is better)
Translates to: HRFSLQQVLHSKAKCDSGRSLRF*CSSVRT
Trigger: TGTCCTAACAGAGCTGCAGCAGAACCTGAGACTTCG...ACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp CACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGGTCCTTTCTGGTCGTaGCTTGGTCTACATTCTCCA +
Preference number: 4 (lower is better)
Translates to: HRFSLQQVLHSKAKCDSGGPFWS*LGLHSP
Trigger: TGGAGAATGTAGACCAAGCCACGACCAGAAAGGACC...ACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp GACTGTCGTCCAGTGAAGCCAGATGAAGAAAATGATAGTCCATATGGTTCAAAAGGGTGGTGCCATTTCTaGGCTGGATGGTCCAGGGTT +
Preference number: 4 (lower is better)
Translates to: DCRPVKPDEENDSPYGSKGWCHF*AGWSRV
Trigger: AACCCTGGACCATCCAGCCCAGAAATGGCACCACCC...TTTTGAACCATATGGACTATCATTTTCTTCATCTGGCTTCACTGGACGACAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142740.2
CDS-3UTR TCA 90 bp TTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGATGGTTATCTGGTGTTaGAGAGCCAGAGAAGGATCC +
Preference number: 4 (lower is better)
Translates to: FSLQQVLHSKAKCDSGDEMVIWC*RAREGS
Trigger: GGATCCTTCTCTGGCTCTTCAACACCAGATAACCAT...CTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp AATAAACCACACGTTGTCAGGAGCATATTTCTCAGCCAGCTCAGCAATTCTGCCATGGTTATCTGGTGTTaGAGAGCCAGAGAAGGATCC +
Preference number: 4 (lower is better)
Translates to: NKPHVVRSIFLSQLSNSAMVIWC*RAREGS
Trigger: GGATCCTTCTCTGGCTCTTCAACACCAGATAACCAT...GGCAGAATTGCTGAGCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175663.8
CDS-3UTR TCA 90 bp GATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGCAGGAGTTTCTTCCTTaGCAGTTGAAGTTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: DFPYSRFCTPKPSVIQVMQEFLP*QLKLQR
Trigger: CCTCTGCAACTTCAACTGTCAAGGAAGAAACTCCTG...CATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCATTCCCGCCCACCACCTaGTTTAAAATTGTTACAAAA +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESFPPTT*FKIVTK
Trigger: TTTTGTAACAATTTTAAAGCAGGTGGTGGGCGGGAA...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCAGAACAAATTTTCCAATaGACTTGGCAGCCTTCTCAA +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESEQIFQ*TWQPSQ
Trigger: TTGAGAAGGCTGCCAAGTGCATTGGAAAATTTGTTC...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp TTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGTACATTCTCCACTGTTaGACCCTCTGCAGGAACATG +
Preference number: 4 (lower is better)
Translates to: FSLQQVLHSKAKCDSGDEYILHC*TLCRNM
Trigger: CATGTTCCTGCAGAGGGTGCAACAGTGGAGAATGTA...CTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCACTACTCAGTTCCTGCTaGATTAATTTCTCTTCTTCG +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESLLSSC*INFSSS
Trigger: CGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAG...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR CCA 90 bp CACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTTCGTTTTCAGTGTCGTaGTCGGAGCAGAAACAGTTG +
Preference number: 4 (lower is better)
Translates to: HRFSLQQVLHSKAKCDSGSFSVS*SEQKQL
Trigger: CAACTGTTTCTGCTCCGACCACGACACTGAAAACGA...ACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp AATAAACCACACGTTGTCAGGAGCATATTTCTCAGCCAGCTCAGCAATTCTGCCTCGTTTTCAGTGTCGTaGTCGGAGCAGAAACAGTTG +
Preference number: 4 (lower is better)
Translates to: NKPHVVRSIFLSQLSNSASFSVS*SEQKQL
Trigger: CAACTGTTTCTGCTCCGACCACGACACTGAAAACGA...GGCAGAATTGCTGAGCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR CCA 90 bp TCAGGTGATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCATTTTCCAATGCACTTaGCAGCCTTCTCAAGTAATT +
Preference number: 4 (lower is better)
Translates to: SGDEQSLCPLHQSRELSLIFQCT*QPSQVI
Trigger: AATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAAT...GAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATCACCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCACTTGATTGGGGGCAATaGGGTAAAATTTGTATAATG +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESLDWGQ*GKICIM
Trigger: CATTATACAAATTTTACCTCATTGCCCCCAATCAAG...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR TCA 90 bp TTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTTTCCTCCTGAACTTGTaGGACACAACATCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: LQQVLHSKAKCDSGDEQSFLLNL*DTTSAF
Trigger: AAAAGCAGATGTTGTGTCTCACAAGTTCAGGAGGAA...AGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp TACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTCGTTTTGATTTCCTCCTaGACTTGTGAGACACAACAT +
Preference number: 4 (lower is better)
Translates to: YSRFCTPKPSVIQVMSSLVLISS*TCETQH
Trigger: ATGTTGTGTCTCACAAGTTCAGGAGGAAATCAAAAC...GAGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp CACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGGCTACCTTGAGTTTTaGTTTCCTCCTGAACTTGTG +
Preference number: 4 (lower is better)
Translates to: HRFSLQQVLHSKAKCDSGGYLEF*FPPELV
Trigger: CACAAGTTCAGGAGGAAATCAAAACTCAAGGTAGCC...ACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp CTTTTCCTGAGAGAGCTGTTCCTCTTGGCGCTGGTGATGGGGCTTATAAGGTGCTTCAATTCAAATGCATaGTGTCTCAGACAAGTATTC +
Preference number: 4 (lower is better)
Translates to: LFLRELFLLALVMGLIRCFNSNA*CLRQVF
Trigger: GAATACTTGTCTGAGACAGCATGCATTTGAATTGAA...GCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCTCAGGAAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142740.2
CDS-3UTR GCA 90 bp CACTGTTTCCAGATATATCAGAGCCCAGGGAAATGCCAGCCGGAGACTGTCGTCATGTTTCAATTCAAATaGATGCTGTCTCAGACAAGT +
Preference number: 4 (lower is better)
Translates to: HCFQIYQSPGKCQPETVVMFQFK*MLSQTS
Trigger: ACTTGTCTGAGACAGCATGCATTTGAATTGAAACAT...GACGACAGTCTCCGGCTGGCATTTCCCTGGGCTCTGATATATCTGGAAACAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142740.2
CDS-3UTR CCA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCATTTTCCAATGCACTTaGCAGCCTTCTCAAGTAATT +
Preference number: 4 (lower is better)
Translates to: VLETELGSSRRAASTLNCIFQCT*QPSQVI
Trigger: AATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAAT...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR CCA 90 bp CTGACCTGTGCAAAGCAGAGCCGAGAGCACAGATTTTCCTTACAGCAGGTTCTGCTAGGCATTCAATTATaGTTATCTGGTGTTGAAGAG +
Preference number: 4 (lower is better)
Translates to: LTCAKQSREHRFSLQQVLLGIQL*LSGVEE
Trigger: CTCTTCAACACCAGATAACCATAATTGAATGCCTAG...CAGAACCTGCTGTAAGGAAAATCTGTGCTCTCGGCTCTGCTTTGCACAGGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCACTAGGCATTCAATTATaGTTATCTGGTGTTGAAGAG +
Preference number: 4 (lower is better)
Translates to: KLSSGPLEGQQALLTAESLGIQL*LSGVEE
Trigger: CTCTTCAACACCAGATAACCATAATTGAATGCCTAG...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
3UTR CAA 72 bp TCATCGTTTTCAGTGTCGTGGTCGGAGCAGAAACAGTaGCCTTCAGACTACTCAGTTCCTGCTGGATTAATT +
Preference number: 4 (lower is better)
Translates to: SSFSVSWSEQKQ*PSDYSVPAGLI
Trigger: AATTAATCCAGCAGGAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCGACCACGACACTGAAAACGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110393.2
3UTR CAA 72 bp CCCATAATTTCTTTATCCCTTCCATCTTCAAACTGCTaGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAG +
Preference number: 4 (lower is better)
Translates to: PIISLSLPSSNC*SLSALSRHCFQ
Trigger: CTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATGGAAGGGATAAAGAAATTATGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142740.2
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp TTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGGTCTCAGGAAGTTGCTaGGAATATCTGGATGCATTA +
Preference number: 4 (lower is better)
Translates to: FSLQQVLHSKAKCDSGDEVSGSC*EYLDAL
Trigger: TAATGCATCCAGATATTCTCAGCAACTTCCTGAGAC...CTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp TTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGATCTGCACACTGTATTaGAAGGATTTGGTGCGTTCT +
Preference number: 4 (lower is better)
Translates to: FSLQQVLHSKAKCDSGDEICTLY*KDLVRS
Trigger: AGAACGCACCAAATCCTTTCAATACAGTGTGCAGAT...CTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTTGGGCCAACTTGATTaGATGTATATAACCAAAAGA +
Preference number: 4 (lower is better)
Translates to: VLETELGSSRRAASTLNCLGQLD*MYITKR
Trigger: TCTTTTGGTTATATACATGCAATCAAGTTGGCCCAA...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR GCA 90 bp GAGCCGAGAGCACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTTCAATTCAAATGCATaGTGTCTCAGACAAGTATTC +
Preference number: 4 (lower is better)
Translates to: EPRAQIFLTAGSALQSQVFNSNA*CLRQVF
Trigger: GAATACTTGTCTGAGACAGCATGCATTTGAATTGAA...CACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTGCTCTCGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp GAGCCGAGAGCACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGATGTTTCAATTCAAATaGATGCTGTCTCAGACAAGT +
Preference number: 4 (lower is better)
Translates to: EPRAQIFLTAGSALQSQVMFQFK*MLSQTS
Trigger: ACTTGTCTGAGACAGCATGCATTTGAATTGAAACAT...CACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTGCTCTCGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp TACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTCTTGCTTCACATCATTTaGAAAGGACAACCAGAGTTT +
Preference number: 4 (lower is better)
Translates to: YSRFCTPKPSVIQVMSSLLLHII*KGQPEF
Trigger: AAACTCTGGTTGTCCTTTGCAAATGATGTGAAGCAA...GAGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp TCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTGAGAATATCTGGATGCATTTCGTTTTCAGTGTCGTaGTCGGAGCAGAAACAGTTG +
Preference number: 4 (lower is better)
Translates to: SKPSASSLRKLLRISGCISFSVS*SEQKQL
Trigger: CAACTGTTTCTGCTCCGACCACGACACTGAAAACGA...AATGCATCCAGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR CCA 90 bp CACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGTTGCTGAGAATATCTaGATGCATTACATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: HRFSLQQVLHSKAKCDSGVAENI*MHYISS
Trigger: GGAGGAGATGTAATGCATCCAGATATTCTCAGCAAC...ACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp TTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTCTTGATTGGGGGCAATaGGGTAAAATTTGTATAATG +
Preference number: 4 (lower is better)
Translates to: LQQVLHSKAKCDSGDEQSLDWGQ*GKICIM
Trigger: CATTATACAAATTTTACCTCATTGCCCCCAATCAAG...AGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR TCA 90 bp TTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGGGAAAAATTTCTAACTaGGCATCTGTGAACTCTGAG +
Preference number: 4 (lower is better)
Translates to: FSLQQVLHSKAKCDSGDEGKISN*ASVNSE
Trigger: CTCAGAGTTCACAGATGCTCAGTTAGAAATTTTTCC...CTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp GTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTGAGAATATCTCGGAGCAGAAACAGTTaGCTTCAGACTACTCAGTTC +
Preference number: 4 (lower is better)
Translates to: VSSSKPSASSLRKLLRISRSRNS*LQTTQF
Trigger: GAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCG...AGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp CCTTCCATCTTCAAACTGCTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCATTGGGCCAACTTGATTaGATGTATATAACCAAAAGA +
Preference number: 4 (lower is better)
Translates to: PSIFKLLVSFSPVSALFPLGQLD*MYITKR
Trigger: TCTTTTGGTTATATACATGCAATCAAGTTGGCCCAA...TGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATGGAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp TCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTGAGAATATCTGGATGCATTATCCTAAGGTATATGTaGAAAGAGGCAGCCATGACC +
Preference number: 4 (lower is better)
Translates to: SKPSASSLRKLLRISGCIILRYM*KEAAMT
Trigger: GGTCATGGCTGCCTCTTTGCACATATACCTTAGGAT...AATGCATCCAGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp AATAAACCACACGTTGTCAGGAGCATATTTCTCAGCCAGCTCAGCAATTCTGCCGAACAAATTTTCCAATaGACTTGGCAGCCTTCTCAA +
Preference number: 4 (lower is better)
Translates to: NKPHVVRSIFLSQLSNSAEQIFQ*TWQPSQ
Trigger: TTGAGAAGGCTGCCAAGTGCATTGGAAAATTTGTTC...GGCAGAATTGCTGAGCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175663.8
CDS-3UTR CCA 90 bp GATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGCTACTCAGTTCCTGCTaGATTAATTTCTCTTCTTCG +
Preference number: 4 (lower is better)
Translates to: DFPYSRFCTPKPSVIQVMLLSSC*INFSSS
Trigger: CGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAG...CATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp CATCTTCAAACTGCTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAGATATCTACTCAGTTCCTGCTaGATTAATTTCTCTTCTTCG +
Preference number: 4 (lower is better)
Translates to: HLQTACLFQPCLGTVSRYLLSSC*INFSSS
Trigger: CGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAG...ATATCTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp AGAATATCTGGATGCATTACATCTCCTCCCACTGAAAACACAGCATTCATTGTCAGTATTCTCAGGAGCTaGATCTGTAACCATGGTGCT +
Preference number: 4 (lower is better)
Translates to: RISGCITSPPTENTAFIVSILRS*ICNHGA
Trigger: AGCACCATGGTTACAGATTCAGCTCCTGAGAATACT...GACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp AATATACAATCTCAAGATTCTGGCCCATCACACACACAAGGCATAATCTCTTCTTTGAGAACCTTTTCCTaGGAGAGCTGTTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: NIQSQDSGPSHTQGIISSLRTFS*ESCSSW
Trigger: CCAAGAGGAACAGCTCTCTCAGGAAAAGGTTCTCAA...AGAAGAGATTATGCCTTGTGTGTGTGATGGGCCAGAATCTTGAGATTGTATATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp GTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTGAGAATATCTACCAGATTAGTGCTCTaGAGGTCCTTTACCACTGTA +
Preference number: 4 (lower is better)
Translates to: VSSSKPSASSLRKLLRISTRLVL*RSFTTV
Trigger: TACAGTGGTAAAGGACCTGCAGAGCACTAATCTGGT...AGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp AAGTTGCTGAGAATATCTGGATGCATTACATCTCCTCCCACTGAAAACACAGCAGCTGACAACAGTAAGTaGCATACATACTTCTACCAG +
Preference number: 4 (lower is better)
Translates to: KLLRISGCITSPPTENTAADNSK*HTYFYQ
Trigger: CTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGC...TGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCTCAGCAACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp CCATCACACACACAAGGCATAATCTCTTCTTTTACTAATAGAGGGCCTAGAAGCCTGAGAATATCTGGATaGATTACATCTCCTCCCACT +
Preference number: 4 (lower is better)
Translates to: PSHTQGIISSFTNRGPRSLRISG*ITSPPT
Trigger: AGTGGGAGGAGATGTAATGCATCCAGATATTCTCAG...GCTTCTAGGCCCTCTATTAGTAAAAGAAGAGATTATGCCTTGTGTGTGTGATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp TTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGTTGGGCCAACTTGATTaGATGTATATAACCAAAAGA +
Preference number: 4 (lower is better)
Translates to: FSLQQVLHSKAKCDSGDELGQLD*MYITKR
Trigger: TCTTTTGGTTATATACATGCAATCAAGTTGGCCCAA...CTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp ACCTCCATCACAAGTACCACGAGTGCTTTTTACTTTGGTAAGGTTATAGATGTAACCAGATTAGTGCTCTaGAGGTCCTTTACCACTGTA +
Preference number: 4 (lower is better)
Translates to: TSITSTTSAFYFGKVIDVTRLVL*RSFTTV
Trigger: TACAGTGGTAAAGGACCTGCAGAGCACTAATCTGGT...TACATCTATAACCTTACCAAAGTAAAAAGCACTCGTGGTACTTGTGATGGAGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp ACCTCCATCACAAGTACCACGAGTGCTTTTTACTTTGGTAAGGTTATAGATGTAATCCTAAGGTATATGTaGAAAGAGGCAGCCATGACC +
Preference number: 4 (lower is better)
Translates to: TSITSTTSAFYFGKVIDVILRYM*KEAAMT
Trigger: GGTCATGGCTGCCTCTTTGCACATATACCTTAGGAT...TACATCTATAACCTTACCAAAGTAAAAAGCACTCGTGGTACTTGTGATGGAGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp CACAGCATTCATTGTCTGAATAAACCACACGTTGTCAGGAGCATATTTCTCAGCTTCCCGCCCACCACCTaGTTTAAAATTGTTACAAAA +
Preference number: 4 (lower is better)
Translates to: HSIHCLNKPHVVRSIFLSFPPTT*FKIVTK
Trigger: TTTTGTAACAATTTTAAAGCAGGTGGTGGGCGGGAA...GCTGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATGAATGCTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR TCA 90 bp CCATCACACACACAAGGCATAATCTCTTCTTTTACTAATAGAGGGCCTAGAAGCTGCTCTTCTTTGCTCTaGTGTAAGTATTCAAGCATT +
Preference number: 4 (lower is better)
Translates to: PSHTQGIISSFTNRGPRSCSSLL*CKYSSI
Trigger: AATGCTTGAATACTTACATCAGAGCAAAGAAGAGCA...GCTTCTAGGCCCTCTATTAGTAAAAGAAGAGATTATGCCTTGTGTGTGTGATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp ATCACAAGTACCACGAGTGCTTTTTACTTTGGTAAGGTTATAGATGTAAACCATCGGAGCAGAAACAGTTaGCTTCAGACTACTCAGTTC +
Preference number: 4 (lower is better)
Translates to: ITSTTSAFYFGKVIDVNHRSRNS*LQTTQF
Trigger: GAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCG...ATGGTTTACATCTATAACCTTACCAAAGTAAAAAGCACTCGTGGTACTTGTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp ACCTCCATCACAAGTACCACGAGTGCTTTTTACTTTGGTAAGGTTATAGATGTAGTGAGACACAACATCTaGTTTTCCCAACAAATCGAC +
Preference number: 4 (lower is better)
Translates to: TSITSTTSAFYFGKVIDVVRHNI*FSQQID
Trigger: GTCGATTTGTTGGGAAAAGCAGATGTTGTGTCTCAC...TACATCTATAACCTTACCAAAGTAAAAAGCACTCGTGGTACTTGTGATGGAGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CCA 90 bp GTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTGAGAATATCTCTACTCAGTTCCTGCTaGATTAATTTCTCTTCTTCG +
Preference number: 4 (lower is better)
Translates to: VSSSKPSASSLRKLLRISLLSSC*INFSSS
Trigger: CGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAG...AGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR CCA 90 bp GTTGATCTTCTGTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCATTTTCCAATGCACTTaGCAGCCTTCTCAAGTAATT +
Preference number: 4 (lower is better)
Translates to: VDLLFHHQNLLLAVSGSCIFQCT*QPSQVI
Trigger: AATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAAT...GCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAGAAGATCAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175663.8
CDS-3UTR TCA 90 bp GTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTGAGAATATCTCTTGATTGGGGGCAATaGGGTAAAATTTGTATAATG +
Preference number: 4 (lower is better)
Translates to: VSSSKPSASSLRKLLRISLDWGQ*GKICIM
Trigger: CATTATACAAATTTTACCTCATTGCCCCCAATCAAG...AGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp AAGTTGCTGAGAATATCTGGATGCATTACATCTCCTCCCACTGAAAACACAGCATTGGGCCAACTTGATTaGATGTATATAACCAAAAGA +
Preference number: 4 (lower is better)
Translates to: KLLRISGCITSPPTENTALGQLD*MYITKR
Trigger: TCTTTTGGTTATATACATGCAATCAAGTTGGCCCAA...TGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCTCAGCAACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp ACCTCCATCACAAGTACCACGAGTGCTTTTTACTTTGGTAAGGTTATAGATGTATTCCCGCCCACCACCTaGTTTAAAATTGTTACAAAA +
Preference number: 4 (lower is better)
Translates to: TSITSTTSAFYFGKVIDVFPPTT*FKIVTK
Trigger: TTTTGTAACAATTTTAAAGCAGGTGGTGGGCGGGAA...TACATCTATAACCTTACCAAAGTAAAAAGCACTCGTGGTACTTGTGATGGAGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
3UTR CAA 72 bp TGTAACAAGTTAAAAAGTAAAAGCCAGAGATTGTGTTaGCCTAACAGCCAGCATGCCATGGTCTTGTACAAT +
Preference number: 4 (lower is better)
Translates to: CNKLKSKSQRLC*PNSQHAMVLYN
Trigger: ATTGTACAAGACCATGGCATGCTGGCTGTTAGGCAAACACAATCTCTGGCTTTTACTTTTTAACTTGTTACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp ATGTTTCAATTCAAATGCATGCTGTCTCAGACAAGTATTCAAGGATACAGTGAAGCTGACAACAGTAAGTaGCATACATACTTCTACCAG +
Preference number: 4 (lower is better)
Translates to: MFQFKCMLSQTSIQGYSEADNSK*HTYFYQ
Trigger: CTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGC...TTCACTGTATCCTTGAATACTTGTCTGAGACAGCATGCATTTGAATTGAAACAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR GCA 90 bp AATATACAATCTCAAGATTCTGGCCCATCACACACACAAGGCATAATCTCTTCTATTGAAAGGATTTGGTaGGTTCTGTTTCTATCACAG +
Preference number: 4 (lower is better)
Translates to: NIQSQDSGPSHTQGIISSIERIW*VLFLSQ
Trigger: CTGTGATAGAAACAGAACGCACCAAATCCTTTCAAT...AGAAGAGATTATGCCTTGTGTGTGTGATGGGCCAGAATCTTGAGATTGTATATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR GCA 90 bp ATCACAAGTACCACGAGTGCTTTTTACTTTGGTAAGGTTATAGATGTAAACCATGAACAAATTTTCCAATaGACTTGGCAGCCTTCTCAA +
Preference number: 4 (lower is better)
Translates to: ITSTTSAFYFGKVIDVNHEQIFQ*TWQPSQ
Trigger: TTGAGAAGGCTGCCAAGTGCATTGGAAAATTTGTTC...ATGGTTTACATCTATAACCTTACCAAAGTAAAAAGCACTCGTGGTACTTGTGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CCA 90 bp AGCCTGGAGAAGAAGGGTGCTCTGGAGGCCGCAGGTCCTCCCAGCTaGTTCTGCAGGAAGAGCCCCGGCAGTGCGGTCAGCGTCCTCTCC +
Preference number: 5 (lower is better)
Translates to: SLEKKGALEAAGPPS*FCRKSPGSAVSVLS
Trigger: GGAGAGGACGCTGACCGCACTGCCGGGGCTCTTCCTGCAGAACCAGCTGGGAGGACCTGCGGCCTCCAGAGCACCCTTCTTCTCCAGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002063.15
ENSMUST00000110393.2
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS GCA 90 bp GAGAAGAAGGGTGCTCTGGAGGCCGCAGGTCCTCCCAGCTGGTTCTaGAGGAAGAGCCCCGGCAGTGCGGTCAGCGTCCTCTCCACCATG +
Preference number: 5 (lower is better)
Translates to: EKKGALEAAGPPSWF*RKSPGSAVSVLSTM
Trigger: CATGGTGGAGAGGACGCTGACCGCACTGCCGGGGCTCTTCCTGCAGAACCAGCTGGGAGGACCTGCGGCCTCCAGAGCACCCTTCTTCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002063.15
ENSMUST00000110393.2
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS CCA 90 bp TACCGCGTCAGCATGTACTCGGCAGTGCAGCACACAGGGGGTGGATaGGAGCAGCTTACAGGCCAACAGCCCTTCATTGCCTATGACGTC +
Preference number: 5 (lower is better)
Translates to: YRVSMYSAVQHTGGG*EQLTGQQPFIAYDV
Trigger: GACGTCATAGGCAATGAAGGGCTGTTGGCCTGTAAGCTGCTCCCATCCACCCCCTGTGTGCTGCACTGCCGAGTACATGCTGACGCGGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CCA 90 bp TTGGAGGGCCCAGTCCCCTGCGGGTGGTGCCATTTCTGGGCTGGATaGTCCAGGGTTCACTATGTCTTCACAATTCTGAGCACCCTGAAG +
Preference number: 5 (lower is better)
Translates to: LEGPVPCGWCHFWAG*SRVHYVFTILSTLK
Trigger: CTTCAGGGTGCTCAGAATTGTGAAGACATAGTGAACCCTGGACCATCCAGCCCAGAAATGGCACCACCCGCAGGGGACTGGGCCCTCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142740.2
CDS TCA 90 bp TCAGGAGCTGAATCTGTAACCATGGTGCTGGCACGCTGTGGTAACTaGACTCTACCGGGAGCTTCCCGCCCACCACCTGCTTTAAAATTG +
Preference number: 5 (lower is better)
Translates to: SGAESVTMVLARCGN*TLPGASRPPPALKL
Trigger: CAATTTTAAAGCAGGTGGTGGGCGGGAAGCTCCCGGTAGAGTTCAGTTACCACAGCGTGCCAGCACCATGGTTACAGATTCAGCTCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002063.15
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS TCA 90 bp GGGTGGATGGGAGCAGCTTACAGGCCAACAGCCCTTCATTGCCTATaGCGTCAATCACACGAAGTCTCAGGTTCTGCTGCAGCTCTGTTA +
Preference number: 5 (lower is better)
Translates to: GWMGAAYRPTALHCL*RQSHEVSGSAAALL
Trigger: TAACAGAGCTGCAGCAGAACCTGAGACTTCGTGTGATTGACGTCATAGGCAATGAAGGGCTGTTGGCCTGTAAGCTGCTCCCATCCACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS TCA 90 bp AGACTTCCATGTTGTTATCAGCAAATAAAGAAGGCACAGGCAAGCTaGCACTCTCGAGCTTCTCAGCTGAGGGCGGCCCCGAGAGAGACT +
Preference number: 5 (lower is better)
Translates to: RLPCCYQQIKKAQAS*HSRASQLRAAPRET
Trigger: AGTCTCTCTCGGGGCCGCCCTCAGCTGAGAAGCTCGAGAGTGTCAGCTTGCCTGTGCCTTCTTTATTTGCTGATAACAACATGGAAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp AGCCCTGTCTCGGCACTGTTTCCAGATATATCAGAGCCCAGGGAAATGCCAGCCGGGAGAAGAATGAGCTaGAGGTGTCAACTTGGTTAC +
Preference number: 5 (lower is better)
Translates to: SPVSALFPDISEPREMPAGRRMS*RCQLGY
Trigger: GTAACCAAGTTGACACCTCAAGCTCATTCTTCTCCC...GGCTGGCATTTCCCTGGGCTCTGATATATCTGGAAACAGTGCCGAGACAGGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142740.2
CDS-3UTR CAA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCATTCTCTTCTTCGTGCTaGGATGAGAGTGCAGTGACG +
Preference number: 5 (lower is better)
Translates to: KLSSGPLEGQQALLTAESFSSSC*DESAVT
Trigger: CGTCACTGCACTCTCATCCAAGCACGAAGAAGAGAA...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR CAA 90 bp TCAGGTGATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCCCATCTTCAAACTGCTaGTCTCTTTCAGCCCTGTCT +
Preference number: 5 (lower is better)
Translates to: SGDEQSLCPLHQSRELSLPSSNC*SLSALS
Trigger: AGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATGG...GAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATCACCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp TCAGGTGATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCTCGCTTTGGGCTACCTaGAGTTTTGATTTCCTCCTG +
Preference number: 5 (lower is better)
Translates to: SGDEQSLCPLHQSRELSLSLWAT*SFDFLL
Trigger: CAGGAGGAAATCAAAACTCAAGGTAGCCCAAAGCGA...GAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATCACCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp TACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTCTTCTCTTCTTCGTGCTaGGATGAGAGTGCAGTGACG +
Preference number: 5 (lower is better)
Translates to: YSRFCTPKPSVIQVMSSLFSSSC*DESAVT
Trigger: CGTCACTGCACTCTCATCCAAGCACGAAGAAGAGAA...GAGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTCGGAGCAGAAACAGTaGCCTTCAGACTACTCAGTT +
Preference number: 5 (lower is better)
Translates to: VLETELGSSRRAASTLNCSEQKQ*PSDYSV
Trigger: AACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCGA...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS GCA 90 bp GTCGTGGTCGGAGCAGAAACAGTTGCCTTCAGACTACTCAGTTCCTaGTGGATTAATTTCTCTTCTTCGTGCTTGGATGAGAGTGCAGTG +
Preference number: 5 (lower is better)
Translates to: VVVGAETVAFRLLSS*WINFSSSCLDESAV
Trigger: CACTGCACTCTCATCCAAGCACGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCGACCACGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002063.15
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS GCA 90 bp GACACAGACACGGCTTCATTACTGCAGATTTCCACGAGACCTGAATaGCTGCACTCAGGAGTTTCTTCCTTGACAGTTGAAGTTGCAGAG +
Preference number: 5 (lower is better)
Translates to: DTDTASLLQISTRPE*LHSGVSSLTVEVAE
Trigger: CTCTGCAACTTCAACTGTCAAGGAAGAAACTCCTGAGTGCAGGCATTCAGGTCTCGTGGAAATCTGCAGTAATGAAGCCGTGTCTGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CCA 90 bp GTGGTCGGAGCAGAAACAGTTGCCTTCAGACTACTCAGTTCCTGCTaGATTAATTTCTCTTCTTCGTGCTTGGATGAGAGTGCAGTGACG +
Preference number: 5 (lower is better)
Translates to: VVGAETVAFRLLSSC*INFSSSCLDESAVT
Trigger: CGTCACTGCACTCTCATCCAAGCACGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCGACCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002063.15
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR CAA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTATGGTTATCTGGTGTaGAAGAGCCAGAGAAGGATC +
Preference number: 5 (lower is better)
Translates to: VLETELGSSRRAASTLNCYGYLV*KSQRRI
Trigger: GATCCTTCTCTGGCTCTTCAACACCAGATAACCATA...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR CAA 90 bp TACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTCGGGAGAAGAATGAGCTaGAGGTGTCAACTTGGTTAC +
Preference number: 5 (lower is better)
Translates to: YSRFCTPKPSVIQVMSSLGRRMS*RCQLGY
Trigger: GTAACCAAGTTGACACCTCAAGCTCATTCTTCTCCC...GAGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS TCA 90 bp AGTAGGAGCGCTGGGTGTCTTGTCGCTTTGGGCTACCTTGAGTTTTaGTTTCCTCCTGAACTTGTGAGACACAACATCTGCTTTTCCCAA +
Preference number: 5 (lower is better)
Translates to: SRSAGCLVALGYLEF*FPPELVRHNICFSQ
Trigger: TTGGGAAAAGCAGATGTTGTGTCTCACAAGTTCAGGAGGAAATCAAAACTCAAGGTAGCCCAAAGCGACAAGACACCCAGCGCTCCTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp TTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTTCGGAGCAGAAACAGTaGCCTTCAGACTACTCAGTT +
Preference number: 5 (lower is better)
Translates to: LQQVLHSKAKCDSGDEQSSEQKQ*PSDYSV
Trigger: AACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCGA...AGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp TCAGGTGATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCAATTTTCCAATGCACTaGGCAGCCTTCTCAAGTAAT +
Preference number: 5 (lower is better)
Translates to: SGDEQSLCPLHQSRELSLNFPMH*AAFSSN
Trigger: ATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAATT...GAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATCACCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp GATGAGCAGTCTCTGTGTCCCCTGCACCAAAGCAGAGAACTGAGTCTCAGCCTTCACCCAACTCATAACTaGAAGAAATCTCTGTGGATA +
Preference number: 5 (lower is better)
Translates to: DEQSLCPLHQSRELSLSLHPTHN*KKSLWI
Trigger: TATCCACAGAGATTTCTTCAAGTTATGAGTTGGGTG...AAGGCTGAGACTCAGTTCTCTGCTTTGGTGCAGGGGACACAGAGACTGCTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp GAGCCGAGAGCACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGCCACCTGCTTTAAAATaGTTACAAAACTCTCCGTCA +
Preference number: 5 (lower is better)
Translates to: EPRAQIFLTAGSALQSQVPPALK*LQNSPS
Trigger: TGACGGAGAGTTTTGTAACAATTTTAAAGCAGGTGG...CACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTGCTCTCGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp GTATTGGAAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCCCACCTGCTTTAAAATaGTTACAAAACTCTCCGTCA +
Preference number: 5 (lower is better)
Translates to: VLETELGSSRRAASTLNCPPALK*LQNSPS
Trigger: TGACGGAGAGTTTTGTAACAATTTTAAAGCAGGTGG...GCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTTCCAATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR CAA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCAAATTTTCCAATGCACTaGGCAGCCTTCTCAAGTAAT +
Preference number: 5 (lower is better)
Translates to: KLSSGPLEGQQALLTAESNFPMH*AAFSSN
Trigger: ATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAATT...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS-3UTR CAA 90 bp TTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGAGCAGTCTTATGGTTATCTGGTGTaGAAGAGCCAGAGAAGGATC +
Preference number: 5 (lower is better)
Translates to: LQQVLHSKAKCDSGDEQSYGYLV*KSQRRI
Trigger: GATCCTTCTCTGGCTCTTCAACACCAGATAACCATA...AGACTGCTCATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp CACAGATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTAGCAGTCTCAGGAAGTaGCTGAGAATATCTGGATGC +
Preference number: 5 (lower is better)
Translates to: HRFSLQQVLHSKAKCDSGSSLRK*LRISGC
Trigger: GCATCCAGATATTCTCAGCAACTTCCTGAGACTGCT...ACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp AGCATTCATTGTCTGAATAAACCACACGTTGTCAGGAGCATATTTCTCAGCCAGTTCTCTTCTTCGTGCTaGGATGAGAGTGCAGTGACG +
Preference number: 5 (lower is better)
Translates to: SIHCLNKPHVVRSIFLSQFSSSC*DESAVT
Trigger: CGTCACTGCACTCTCATCCAAGCACGAAGAAGAGAA...CTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATGAATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR CAA 90 bp AAACTGAGCTCGGGTCCTCTAGAAGGGCAGCAAGCACTCTTAACTGCTGAGTCACATACATTAATTCACTaGTCCTTTCATCGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: KLSSGPLEGQQALLTAESHTLIH*SFHRLS
Trigger: GGAAAGACGATGAAAGGACAAGTGAATTAATGTATG...TGACTCAGCAGTTAAGAGTGCTTGCTGCCCTTCTAGAGGACCCGAGCTCAGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110394.8
CDS TCA 90 bp GAGAGAGTCCCCTCTATACAAGGGCTTTCCATCTGCACACTGTATTaGAAGGATTTGGTGCGTTCTGTTTCTATCACAGGAGAAGAACAT +
Preference number: 5 (lower is better)
Translates to: ERVPSIQGLSICTLY*KDLVRSVSITGEEH
Trigger: ATGTTCTTCTCCTGTGATAGAAACAGAACGCACCAAATCCTTTCAATACAGTGTGCAGATGGAAAGCCCTTGTATAGAGGGGACTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp TCCATCTTCAAACTGCTTGTCTCTTTCAGCCCTGTCTCGGCACTGTTTCCAGATCCACCTGCTTTAAAATaGTTACAAAACTCTCCGTCA +
Preference number: 5 (lower is better)
Translates to: SIFKLLVSFSPVSALFPDPPALK*LQNSPS
Trigger: TGACGGAGAGTTTTGTAACAATTTTAAAGCAGGTGG...ATCTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTGAAGATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177372.8
CDS-3UTR CAA 90 bp ATCACAAGTACCACGAGTGCTTTTTACTTTGGTAAGGTTATAGATGTAAACCATAGAGAGCTGTTCCTCTaGGCGCTGGTGATGGGGCTT +
Preference number: 5 (lower is better)
Translates to: ITSTTSAFYFGKVIDVNHRELFL*ALVMGL
Trigger: AAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCT...ATGGTTTACATCTATAACCTTACCAAAGTAAAAAGCACTCGTGGTACTTGTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CCA 90 bp CCTCTATACAAGGGCTTTCCATCTGCACACTGTATTGAAAGGATTTaGTGCGTTCTGTTTCTATCACAGGAGAAGAACATTCAGGTTGCT +
Preference number: 5 (lower is better)
Translates to: PLYKGFPSAHCIERI*CVLFLSQEKNIQVA
Trigger: AGCAACCTGAATGTTCTTCTCCTGTGATAGAAACAGAACGCACCAAATCCTTTCAATACAGTGTGCAGATGGAAAGCCCTTGTATAGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp AGCATTCATTGTCTGAATAAACCACACGTTGTCAGGAGCATATTTCTCAGCCAGTATGGTTATCTGGTGTaGAAGAGCCAGAGAAGGATC +
Preference number: 5 (lower is better)
Translates to: SIHCLNKPHVVRSIFLSQYGYLV*KSQRRI
Trigger: GATCCTTCTCTGGCTCTTCAACACCAGATAACCATA...CTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATGAATGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175663.8
CDS-3UTR CAA 90 bp GATTTTCCTTACAGCAGGTTCTGCACTCCAAAGCCAAGTGTGATTCAGGTGATGCATACATTAATTCACTaGTCCTTTCATCGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: DFPYSRFCTPKPSVIQVMHTLIH*SFHRLS
Trigger: GGAAAGACGATGAAAGGACAAGTGAATTAATGTATG...CATCACCTGAATCACACTTGGCTTTGGAGTGCAGAACCTGCTGTAAGGAAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp AATAAACCACACGTTGTCAGGAGCATATTTCTCAGCCAGCTCAGCAATTCTGCCCATACATTAATTCACTaGTCCTTTCATCGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: NKPHVVRSIFLSQLSNSAHTLIH*SFHRLS
Trigger: GGAAAGACGATGAAAGGACAAGTGAATTAATGTATG...GGCAGAATTGCTGAGCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175663.8
CDS GCA 90 bp AGGACAGAAGTCAGAGCAACTCCAGGCTCTGATATTTTTATAGTTTaGTTCACATCATTTGCAAAGGACAACCAGAGTTTGCCAAAGTCT +
Preference number: 5 (lower is better)
Translates to: RTEVRATPGSDIFIV*FTSFAKDNQSLPKS
Trigger: AGACTTTGGCAAACTCTGGTTGTCCTTTGCAAATGATGTGAAGCAAACTATAAAAATATCAGAGCCTGGAGTTGCTCTGACTTCTGTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp CCATCACACACACAAGGCATAATCTCTTCTTTTACTAATAGAGGGCCTAGAAGCTTTGCTTCACATCATTaGCAAAGGACAACCAGAGTT +
Preference number: 5 (lower is better)
Translates to: PSHTQGIISSFTNRGPRSFASHH*QRTTRV
Trigger: AACTCTGGTTGTCCTTTGCAAATGATGTGAAGCAAA...GCTTCTAGGCCCTCTATTAGTAAAAGAAGAGATTATGCCTTGTGTGTGTGATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp AGAATATCTGGATGCATTACATCTCCTCCCACTGAAAACACAGCATTCATTGTCCCACCTGCTTTAAAATaGTTACAAAACTCTCCGTCA +
Preference number: 5 (lower is better)
Translates to: RISGCITSPPTENTAFIVPPALK*LQNSPS
Trigger: TGACGGAGAGTTTTGTAACAATTTTAAAGCAGGTGG...GACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS-3UTR CAA 90 bp GTTTCATCATCAAAACCTTCTGCTAGCAGTCTCAGGAAGTTGCTGAGAATATCTAATTTTCCAATGCACTaGGCAGCCTTCTCAAGTAAT +
Preference number: 5 (lower is better)
Translates to: VSSSKPSASSLRKLLRISNFPMH*AAFSSN
Trigger: ATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAATT...AGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175663.8
CDS-3UTR CAA 90 bp ACCTCCATCACAAGTACCACGAGTGCTTTTTACTTTGGTAAGGTTATAGATGTAGGTTGCTCAATGATCTaGAAATTTTCCACAGGAAAA +
Preference number: 5 (lower is better)
Translates to: TSITSTTSAFYFGKVIDVGCSMI*KFSTGK
Trigger: TTTTCCTGTGGAAAATTTCAAGATCATTGAGCAACC...TACATCTATAACCTTACCAAAGTAAAAAGCACTCGTGGTACTTGTGATGGAGGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS-3UTR CAA 90 bp ATCACAAGTACCACGAGTGCTTTTTACTTTGGTAAGGTTATAGATGTAAACCATCATGGAAAATTCCAGTaGAACAGAATGCGTATCCAT +
Preference number: 5 (lower is better)
Translates to: ITSTTSAFYFGKVIDVNHHGKFQ*NRMRIH
Trigger: ATGGATACGCATTCTGTTCAACTGGAATTTTCCATG...ATGGTTTACATCTATAACCTTACCAAAGTAAAAAGCACTCGTGGTACTTGTGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS GCA 72 bp GGTGCTCTGGAGGCCGCAGGTCCTCCCAGCTGGTTCTaGAGGAAGAGCCCCGGCAGTGCGGTCAGCGTCCTC +
Preference number: 6 (lower is better)
Translates to: GALEAAGPPSWF*RKSPGSAVSVL
Trigger: GAGGACGCTGACCGCACTGCCGGGGCTCTTCCTGCAGAACCAGCTGGGAGGACCTGCGGCCTCCAGAGCACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002063.15
ENSMUST00000110393.2
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS CCA 72 bp AAGAAGGGTGCTCTGGAGGCCGCAGGTCCTCCCAGCTaGTTCTGCAGGAAGAGCCCCGGCAGTGCGGTCAGC +
Preference number: 6 (lower is better)
Translates to: KKGALEAAGPPS*FCRKSPGSAVS
Trigger: GCTGACCGCACTGCCGGGGCTCTTCCTGCAGAACCAGCTGGGAGGACCTGCGGCCTCCAGAGCACCCTTCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002063.15
ENSMUST00000110393.2
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS CCA 72 bp AGCATGTACTCGGCAGTGCAGCACACAGGGGGTGGATaGGAGCAGCTTACAGGCCAACAGCCCTTCATTGCC +
Preference number: 6 (lower is better)
Translates to: SMYSAVQHTGGG*EQLTGQQPFIA
Trigger: GGCAATGAAGGGCTGTTGGCCTGTAAGCTGCTCCCATCCACCCCCTGTGTGCTGCACTGCCGAGTACATGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CCA 72 bp TTGGAGGGCCCAGTCCCCTGCGGGTGGTGCCATTTCTaGGCTGGATGGTCCAGGGTTCACTATGTCTTCACA +
Preference number: 6 (lower is better)
Translates to: LEGPVPCGWCHF*AGWSRVHYVFT
Trigger: TGTGAAGACATAGTGAACCCTGGACCATCCAGCCCAGAAATGGCACCACCCGCAGGGGACTGGGCCCTCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142740.2
CDS TCA 72 bp GAATCTGTAACCATGGTGCTGGCACGCTGTGGTAACTaGACTCTACCGGGAGCTTCCCGCCCACCACCTGCT +
Preference number: 6 (lower is better)
Translates to: ESVTMVLARCGN*TLPGASRPPPA
Trigger: AGCAGGTGGTGGGCGGGAAGCTCCCGGTAGAGTTCAGTTACCACAGCGTGCCAGCACCATGGTTACAGATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002063.15
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS CCA 72 bp GGGCCCAGTCCCCTGCGGGTGGTGCCATTTCTGGGCTaGATGGTCCAGGGTTCACTATGTCTTCACAATTCT +
Preference number: 6 (lower is better)
Translates to: GPSPLRVVPFLG*MVQGSLCLHNS
Trigger: AGAATTGTGAAGACATAGTGAACCCTGGACCATCCAGCCCAGAAATGGCACCACCCGCAGGGGACTGGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142740.2
CDS CCA 72 bp CCAGTCCCCTGCGGGTGGTGCCATTTCTGGGCTGGATaGTCCAGGGTTCACTATGTCTTCACAATTCTGAGC +
Preference number: 6 (lower is better)
Translates to: PVPCGWCHFWAG*SRVHYVFTILS
Trigger: GCTCAGAATTGTGAAGACATAGTGAACCCTGGACCATCCAGCCCAGAAATGGCACCACCCGCAGGGGACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142740.2
CDS TCA 72 bp TGTTGTTATCAGCAAATAAAGAAGGCACAGGCAAGCTaGCACTCTCGAGCTTCTCAGCTGAGGGCGGCCCCG +
Preference number: 6 (lower is better)
Translates to: CCYQQIKKAQAS*HSRASQLRAAP
Trigger: CGGGGCCGCCCTCAGCTGAGAAGCTCGAGAGTGTCAGCTTGCCTGTGCCTTCTTTATTTGCTGATAACAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CAA 90 bp TTCAGACTACTCAGTTCCTGCTGGATTAATTTCTCTTCTTCGTGCTaGGATGAGAGTGCAGTGACGCCACGGATGAGGCCGCCCAGCCTG +
Preference number: 6 (lower is better)
Translates to: FRLLSSCWINFSSSC*DESAVTPRMRPPSL
Trigger: CAGGCTGGGCGGCCTCATCCGTGGCGTCACTGCACTCTCATCCAAGCACGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAGTCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002063.15
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS TCA 72 bp GGAGCAGCTTACAGGCCAACAGCCCTTCATTGCCTATaGCGTCAATCACACGAAGTCTCAGGTTCTGCTGCA +
Preference number: 6 (lower is better)
Translates to: GAAYRPTALHCL*RQSHEVSGSAA
Trigger: TGCAGCAGAACCTGAGACTTCGTGTGATTGACGTCATAGGCAATGAAGGGCTGTTGGCCTGTAAGCTGCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CAA 72 bp CTCAGTTCCTGCTGGATTAATTTCTCTTCTTCGTGCTaGGATGAGAGTGCAGTGACGCCACGGATGAGGCCG +
Preference number: 6 (lower is better)
Translates to: LSSCWINFSSSC*DESAVTPRMRP
Trigger: CGGCCTCATCCGTGGCGTCACTGCACTCTCATCCAAGCACGAAGAAGAGAAATTAATCCAGCAGGAACTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002063.15
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS CAA 72 bp GTGGATGGGAGCAGCTTACAGGCCAACAGCCCTTCATaGCCTATGACGTCAATCACACGAAGTCTCAGGTTC +
Preference number: 6 (lower is better)
Translates to: VDGSSLQANSPS*PMTSITRSLRF
Trigger: GAACCTGAGACTTCGTGTGATTGACGTCATAGGCAATGAAGGGCTGTTGGCCTGTAAGCTGCTCCCATCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS TCA 72 bp GCTGGGTGTCTTGTCGCTTTGGGCTACCTTGAGTTTTaGTTTCCTCCTGAACTTGTGAGACACAACATCTGC +
Preference number: 6 (lower is better)
Translates to: AGCLVALGYLEF*FPPELVRHNIC
Trigger: GCAGATGTTGTGTCTCACAAGTTCAGGAGGAAATCAAAACTCAAGGTAGCCCAAAGCGACAAGACACCCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CAA 72 bp CTACCGGGAGCTTCCCGCCCACCACCTGCTTTAAAATaGTTACAAAACTCTCCGTCAAGTCTTTATAGCCAG +
Preference number: 6 (lower is better)
Translates to: LPGASRPPPALK*LQNSPSSLYSQ
Trigger: CTGGCTATAAAGACTTGACGGAGAGTTTTGTAACAATTTTAAAGCAGGTGGTGGGCGGGAAGCTCCCGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002063.15
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS GCA 72 bp ACGGCTTCATTACTGCAGATTTCCACGAGACCTGAATaGCTGCACTCAGGAGTTTCTTCCTTGACAGTTGAA +
Preference number: 6 (lower is better)
Translates to: TASLLQISTRPE*LHSGVSSLTVE
Trigger: TTCAACTGTCAAGGAAGAAACTCCTGAGTGCAGGCATTCAGGTCTCGTGGAAATCTGCAGTAATGAAGCCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CAA 90 bp ACAGTTGAAGTTGCAGAGGATGAAGGGGGATTAAAGACTTCCATGTaGTTATCAGCAAATAAAGAAGGCACAGGCAAGCTGACACTCTCG +
Preference number: 6 (lower is better)
Translates to: TVEVAEDEGGLKTSM*LSANKEGTGKLTLS
Trigger: CGAGAGTGTCAGCTTGCCTGTGCCTTCTTTATTTGCTGATAACAACATGGAAGTCTTTAATCCCCCTTCATCCTCTGCAACTTCAACTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CAA 90 bp AGAGAGAGTCCCCTCTATACAAGGGCTTTCCATCTGCACACTGTATaGAAAGGATTTGGTGCGTTCTGTTTCTATCACAGGAGAAGAACA +
Preference number: 6 (lower is better)
Translates to: RESPLYTRAFHLHTV*KGFGAFCFYHRRRT
Trigger: TGTTCTTCTCCTGTGATAGAAACAGAACGCACCAAATCCTTTCAATACAGTGTGCAGATGGAAAGCCCTTGTATAGAGGGGACTCTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS TCA 72 bp CCCTCTATACAAGGGCTTTCCATCTGCACACTGTATTaGAAGGATTTGGTGCGTTCTGTTTCTATCACAGGA +
Preference number: 6 (lower is better)
Translates to: PSIQGLSICTLY*KDLVRSVSITG
Trigger: TCCTGTGATAGAAACAGAACGCACCAAATCCTTTCAATACAGTGTGCAGATGGAAAGCCCTTGTATAGAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CCA 72 bp GCAGAAACAGTTGCCTTCAGACTACTCAGTTCCTGCTaGATTAATTTCTCTTCTTCGTGCTTGGATGAGAGT +
Preference number: 6 (lower is better)
Translates to: AETVAFRLLSSC*INFSSSCLDES
Trigger: ACTCTCATCCAAGCACGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAGTCTGAAGGCAACTGTTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002063.15
ENSMUST00000110394.8
ENSMUST00000175663.8
ENSMUST00000177372.8
CDS CAA 72 bp GTTGCAGAGGATGAAGGGGGATTAAAGACTTCCATGTaGTTATCAGCAAATAAAGAAGGCACAGGCAAGCTG +
Preference number: 6 (lower is better)
Translates to: VAEDEGGLKTSM*LSANKEGTGKL
Trigger: CAGCTTGCCTGTGCCTTCTTTATTTGCTGATAACAACATGGAAGTCTTTAATCCCCCTTCATCCTCTGCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CAA 72 bp GTTTGCTTCACATCATTTGCAAAGGACAACCAGAGTTaGCCAAAGTCTTCAGTTGAGATCTTTAATGGTCTA +
Preference number: 6 (lower is better)
Translates to: VCFTSFAKDNQS*PKSSVEIFNGL
Trigger: TAGACCATTAAAGATCTCAACTGAAGACTTTGGCAAACTCTGGTTGTCCTTTGCAAATGATGTGAAGCAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15
CDS CAA 72 bp GCGTTCTGTTTCTATCACAGGAGAAGAACATTCAGGTaGCTCAATGATCTTGAAATTTTCCACAGGAAAAAT +
Preference number: 6 (lower is better)
Translates to: AFCFYHRRRTFR*LNDLEIFHRKN
Trigger: ATTTTTCCTGTGGAAAATTTCAAGATCATTGAGCAACCTGAATGTTCTTCTCCTGTGATAGAAACAGAACGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002063.15