Pregenerated sensors for AP1S3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054702Ensembl transcript IDs: ENSMUST00000159312.2, ENSMUST00000160706.2, ENSMUST00000162342.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTTGGCATGGTGCCAGAGGCCGTGCGGAGACTGGATGCAAGGAGTTaGTTGTTTGTAGGTTCACAGCATGGAGCGCTCAGAATCTTCAAG | + |
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Preference number: 1 (lower is better) Translates to: FGMVPEAVRRLDARS*LFVGSQHGALRIFK Trigger: CTTGAAGATTCTGAGCGCTCCATGCTGTGAACCTACAAACAAGCAACTCCTTGCATCCAGTCTCCGCACGGCCTCTGGCACCATGCCAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159312.2 ENSMUST00000162342.8 |
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| 3UTR GCA 90 bp | TTAAGTAGTTTTTGGCATGGTGCCAGAGGCCGTGCGGAGACTGGATaGAAGGAGTTGCTTGTTTGTAGGTTCACAGCATGGAGCGCTCAG | + |
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Preference number: 1 (lower is better) Translates to: LSSFWHGARGRAETG*KELLVCRFTAWSAQ Trigger: CTGAGCGCTCCATGCTGTGAACCTACAAACAAGCAACTCCTTGCATCCAGTCTCCGCACGGCCTCTGGCACCATGCCAAAAACTACTTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000159312.2 ENSMUST00000162342.8 |
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| 3UTR CCA 90 bp | GTCCTAGCACTCAGGTACAACGGCCACCAAACCTCAACACTTACATaGAGAACACATATACAAAACTGCAGCCAGAGACACCTCGAAGAA | + |
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Preference number: 1 (lower is better) Translates to: VLALRYNGHQTSTLT*RTHIQNCSQRHLEE Trigger: TTCTTCGAGGTGTCTCTGGCTGCAGTTTTGTATATGTGTTCTCCATGTAAGTGTTGAGGTTTGGTGGCCGTTGTACCTGAGTGCTAGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR CCA 90 bp | AAGGTAACATGGTCACAGCAATTACAGTCAGCAAAAATATTTTTCTaGGAAAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: KVTWSQQLQSAKIFF*ERGERERERERERE Trigger: CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTTCCCAGAAAAATATTTTTGCTGACTGTAATTGCTGTGACCATGTTACCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR CCA 90 bp | ATGGTTATTCTAAGGAATGGGTCCATCTGTCTGTCTGTTCTTCTCTaGTCTTGCCATCTTCCCTTAAGTATGTCTGATGAGATGAACCAA | + |
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Preference number: 1 (lower is better) Translates to: MVILRNGSICLSVLL*SCHLPLSMSDEMNQ Trigger: TTGGTTCATCTCATCAGACATACTTAAGGGAAGATGGCAAGACCAGAGAAGAACAGACAGACAGATGGACCCATTCCTTAGAATAACCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR CCA 90 bp | GCATGGAGCGCTCAGAATCTTCAAGTAGACTGTACACTTAAAACGTaGGCTTGTTCATGTATTCTTCCATTGTCTCTTGTAACATATCAG | + |
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Preference number: 1 (lower is better) Translates to: AWSAQNLQVDCTLKT*ACSCILPLSLVTYQ Trigger: CTGATATGTTACAAGAGACAATGGAAGAATACATGAACAAGCCCACGTTTTAAGTGTACAGTCTACTTGAAGATTCTGAGCGCTCCATGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159312.2 |
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| 3UTR CAA 90 bp | TTTTGGCATGGTGCCAGAGGCCGTGCGGAGACTGGATGCAAGGAGTaGCTTGTTTGTAGGTTCACAGCATGGAGCGCTCAGAATCTTCAA | + |
|
Preference number: 2 (lower is better) Translates to: FWHGARGRAETGCKE*LVCRFTAWSAQNLQ Trigger: TTGAAGATTCTGAGCGCTCCATGCTGTGAACCTACAAACAAGCAACTCCTTGCATCCAGTCTCCGCACGGCCTCTGGCACCATGCCAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159312.2 ENSMUST00000162342.8 |
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| 3UTR-3UTR GCA 90 bp | CCTATTGTCTTAACCACAGAAGTCCTAGCACTCAGGTACAACGGCCACCAAACCGACACCTCGAAGAAATaGTACAATACAGGCAGCTTC | + |
|
Preference number: 2 (lower is better) Translates to: PIVLTTEVLALRYNGHQTDTSKK*YNTGSF Trigger: GAAGCTGCCTGTATTGTAGCATTTCTTCGAGGTGTC...GGTTTGGTGGCCGTTGTACCTGAGTGCTAGGACTTCTGTGGTTAAGACAATAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR-3UTR GCA 90 bp | AACACAGCAAGGAGCTATTCAATCTGCAGCAATTATGTGAAACACCTAGAGCCCCGTGCGGAGACTGGATaGAAGGAGTTGCTTGTTTGT | + |
|
Preference number: 2 (lower is better) Translates to: NTARSYSICSNYVKHLEPRAETG*KELLVC Trigger: ACAAACAAGCAACTCCTTGCATCCAGTCTCCGCACG...GGGCTCTAGGTGTTTCACATAATTGCTGCAGATTGAATAGCTCCTTGCTGTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159312.2 ENSMUST00000162342.8 |
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| 3UTR-3UTR GCA 90 bp | CCTATTGTCTTAACCACAGAAGTCCTAGCACTCAGGTACAACGGCCACCAAACCCTCAGTACCCAGCTATaGAGAACTTCTGTTTTGGAA | + |
|
Preference number: 2 (lower is better) Translates to: PIVLTTEVLALRYNGHQTLSTQL*RTSVLE Trigger: TTCCAAAACAGAAGTTCTGCATAGCTGGGTACTGAG...GGTTTGGTGGCCGTTGTACCTGAGTGCTAGGACTTCTGTGGTTAAGACAATAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR-3UTR TCA 90 bp | AAACACAGCAAGGAGCTATTCAATCTGCAGCAATTATGTGAAACACCTAGAGCCAGTCTTCAATGGCCTTaGCTGCTGTTTTCTTGGATG | + |
|
Preference number: 2 (lower is better) Translates to: KHSKELFNLQQLCETPRASLQWP*LLFSWM Trigger: CATCCAAGAAAACAGCAGTCAAGGCCATTGAAGACT...GGCTCTAGGTGTTTCACATAATTGCTGCAGATTGAATAGCTCCTTGCTGTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159312.2 |
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| 3UTR-3UTR CCA 90 bp | GTCCACTGTATGAGATCTCCCTATTGTCTTAACCACAGAAGTCCTAGCACTCAGACCTCAACACTTACATaGAGAACACATATACAAAAC | + |
|
Preference number: 2 (lower is better) Translates to: VHCMRSPYCLNHRSPSTQTSTLT*RTHIQN Trigger: GTTTTGTATATGTGTTCTCCATGTAAGTGTTGAGGT...CTGAGTGCTAGGACTTCTGTGGTTAAGACAATAGGGAGATCTCATACAGTGGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCAAGTAGACTGTACACTTAAAACGTGGGCTTGTTCATGTATTCTTCCATTGTTCAATGGCCTTGACTaGTGTTTTCTTGGATGTTTC | + |
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Preference number: 2 (lower is better) Translates to: LQVDCTLKTWACSCILPLFNGLD*CFLGCF Trigger: GAAACATCCAAGAAAACAGCAGTCAAGGCCATTGAA...CAATGGAAGAATACATGAACAAGCCCACGTTTTAAGTGTACAGTCTACTTGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159312.2 |
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| 3UTR GCA 72 bp | TGGAAAGAGAGGCCCATTGGACACGCAGACTTTGTGTaGCCCGGTACAGGGGAACGCCAGGGCCAAAGGGGG | + |
|
Preference number: 3 (lower is better) Translates to: WKERPIGHADFV*PGTGERQGQRG Trigger: CCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR CCA 72 bp | TGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTaGACACGCAGACTTTGTGTGCCCCGGTACAGGGGA | + |
|
Preference number: 3 (lower is better) Translates to: WPSRPSLEREAH*TRRLCVPRYRG Trigger: TCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR GCA 72 bp | TTTTGGCATGGTGCCAGAGGCCGTGCGGAGACTGGATaGAAGGAGTTGCTTGTTTGTAGGTTCACAGCATGG | + |
|
Preference number: 3 (lower is better) Translates to: FWHGARGRAETG*KELLVCRFTAW Trigger: CCATGCTGTGAACCTACAAACAAGCAACTCCTTGCATCCAGTCTCCGCACGGCCTCTGGCACCATGCCAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159312.2 ENSMUST00000162342.8 |
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| 3UTR-3UTR CAA 90 bp | ATCCCTTTAAGTAGTTTTTGGCATGGTGCCAGAGGCCGTGCGGAGACTGGATGCGAGTCTTCAATGGCCTaGACTGCTGTTTTCTTGGAT | + |
|
Preference number: 3 (lower is better) Translates to: IPLSSFWHGARGRAETGCESSMA*TAVFLD Trigger: ATCCAAGAAAACAGCAGTCAAGGCCATTGAAGACTC...GCATCCAGTCTCCGCACGGCCTCTGGCACCATGCCAAAAACTACTTAAAGGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159312.2 |
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| 3UTR-3UTR CAA 90 bp | GTCCACTGTATGAGATCTCCCTATTGTCTTAACCACAGAAGTCCTAGCACTCAGACTGGATGCAAGGAGTaGCTTGTTTGTAGGTTCACA | + |
|
Preference number: 3 (lower is better) Translates to: VHCMRSPYCLNHRSPSTQTGCKE*LVCRFT Trigger: TGTGAACCTACAAACAAGCAACTCCTTGCATCCAGT...CTGAGTGCTAGGACTTCTGTGGTTAAGACAATAGGGAGATCTCATACAGTGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR TCA 72 bp | AAATGCTACAATACAGGCAGCTTCCTACTTCATGTCTaGGCAGACTCAGTACCCAGCTATGCAGAACTTCTG | + |
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Preference number: 3 (lower is better) Translates to: KCYNTGSFLLHV*ADSVPSYAELL Trigger: CAGAAGTTCTGCATAGCTGGGTACTGAGTCTGCTCAGACATGAAGTAGGAAGCTGCCTGTATTGTAGCATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR GCA 72 bp | AATGGGTCCATCTGTCTGTCTGTTCTTCTCTGGTCTTaGCATCTTCCCTTAAGTATGTCTGATGAGATGAAC | + |
|
Preference number: 3 (lower is better) Translates to: NGSICLSVLLWS*HLPLSMSDEMN Trigger: GTTCATCTCATCAGACATACTTAAGGGAAGATGGCAAGACCAGAGAAGAACAGACAGACAGATGGACCCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR-3UTR CAA 90 bp | ACAACGGCCACCAAACCTCAACACTTACATGGAGAACACATATACAAAACTGCAGATGCAAGGAGTTGCTaGTTTGTAGGTTCACAGCAT | + |
|
Preference number: 3 (lower is better) Translates to: TTATKPQHLHGEHIYKTADARSC*FVGSQH Trigger: ATGCTGTGAACCTACAAACAAGCAACTCCTTGCATC...TGCAGTTTTGTATATGTGTTCTCCATGTAAGTGTTGAGGTTTGGTGGCCGTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR-3UTR CAA 90 bp | CTGCAGCAATTATGTGAAACACCTAGAGCCCCAGTGAGTATTGATACACAGTATACTGGATGCAAGGAGTaGCTTGTTTGTAGGTTCACA | + |
|
Preference number: 3 (lower is better) Translates to: LQQLCETPRAPVSIDTQYTGCKE*LVCRFT Trigger: TGTGAACCTACAAACAAGCAACTCCTTGCATCCAGT...ATACTGTGTATCAATACTCACTGGGGCTCTAGGTGTTTCACATAATTGCTGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159312.2 ENSMUST00000162342.8 |
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| 3UTR TCA 72 bp | CTTCCCTTAAGTATGTCTGATGAGATGAACCAAAGATaGCAACCACATTCTCTAAGGGTCCACTGTATGAGA | + |
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Preference number: 3 (lower is better) Translates to: LPLSMSDEMNQR*QPHSLRVHCMR Trigger: TCTCATACAGTGGACCCTTAGAGAATGTGGTTGTCATCTTTGGTTCATCTCATCAGACATACTTAAGGGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR CCA 72 bp | GCTCAGAATCTTCAAGTAGACTGTACACTTAAAACGTaGGCTTGTTCATGTATTCTTCCATTGTCTCTTGTA | + |
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Preference number: 3 (lower is better) Translates to: AQNLQVDCTLKT*ACSCILPLSLV Trigger: TACAAGAGACAATGGAAGAATACATGAACAAGCCCACGTTTTAAGTGTACAGTCTACTTGAAGATTCTGAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159312.2 |
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| 3UTR GCA 72 bp | TGTATCTCATGTTCACAATTATTGCTATATAAATGTTaGCATAGCTCTTCCTCTCAGGATTATGGTAAAAGC | + |
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Preference number: 3 (lower is better) Translates to: CISCSQLLLYKC*HSSSSQDYGKS Trigger: GCTTTTACCATAATCCTGAGAGGAAGAGCTATGGCAACATTTATATAGCAATAATTGTGAACATGAGATACA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| 3UTR CAA 72 bp | GGTGCCAGAGGCCGTGCGGAGACTGGATGCAAGGAGTaGCTTGTTTGTAGGTTCACAGCATGGAGCGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: GARGRAETGCKE*LVCRFTAWSAQ Trigger: CTGAGCGCTCCATGCTGTGAACCTACAAACAAGCAACTCCTTGCATCCAGTCTCCGCACGGCCTCTGGCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159312.2 ENSMUST00000162342.8 |
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| 3UTR CAA 72 bp | ATCACTGGAAAGAGAGGCCCATTGGACACGCAGACTTaGTGTGCCCCGGTACAGGGGAACGCCAGGGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: ITGKRGPLDTQT*CAPVQGNARAK Trigger: TTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR TCA 90 bp | CTTAACCACAGAAGTCCTAGCACTCAGGTACAACGGCCACCAAACCTCAACACTGCTCCTTCCAGTCAATaGAGCTGCTGGTCCTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: LNHRSPSTQVQRPPNLNTAPSSQ*SCWSCA Trigger: GGCACAGGACCAGCAGCTTCATTGACTGGAAGGAGC...AGTGTTGAGGTTTGGTGGCCGTTGTACCTGAGTGCTAGGACTTCTGTGGTTAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR GCA 90 bp | CCTATTGTCTTAACCACAGAAGTCCTAGCACTCAGGTACAACGGCCACCAAACCGTGGTGTACCATTTCTaGAGCCGCAGCTTCCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: PIVLTTEVLALRYNGHQTVVYHF*SRSFPC Trigger: ACAAGGGAAGCTGCGGCTGCAGAAATGGTACACCAC...GGTTTGGTGGCCGTTGTACCTGAGTGCTAGGACTTCTGTGGTTAAGACAATAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR TCA 90 bp | AACACAGCAAGGAGCTATTCAATCTGCAGCAATTATGTGAAACACCTAGAGCCCGCTCCTTCCAGTCAATaGAGCTGCTGGTCCTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: NTARSYSICSNYVKHLEPAPSSQ*SCWSCA Trigger: GGCACAGGACCAGCAGCTTCATTGACTGGAAGGAGC...GGGCTCTAGGTGTTTCACATAATTGCTGCAGATTGAATAGCTCCTTGCTGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159312.2 ENSMUST00000162342.8 |
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| CDS-3UTR TCA 90 bp | ATCCCTTTAAGTAGTTTTTGGCATGGTGCCAGAGGCCGTGCGGAGACTGGATGCAGTCTTCAATGGCCTTaGCTGCTGTTTTCTTGGATG | + |
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Preference number: 4 (lower is better) Translates to: IPLSSFWHGARGRAETGCSLQWP*LLFSWM Trigger: CATCCAAGAAAACAGCAGTCAAGGCCATTGAAGACT...GCATCCAGTCTCCGCACGGCCTCTGGCACCATGCCAAAAACTACTTAAAGGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR GCA 90 bp | ACACTTAAAACGTGGGCTTGTTCATGTATTCTTCCATTGTCTCTTGTAACATATAAGCTGCTGGTCCTGTaGCCACGAGAGAGGACGGTC | + |
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Preference number: 4 (lower is better) Translates to: TLKTWACSCILPLSLVTYKLLVL*PRERTV Trigger: GACCGTCCTCTCTCGTGGGCACAGGACCAGCAGCTT...ATATGTTACAAGAGACAATGGAAGAATACATGAACAAGCCCACGTTTTAAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159312.2 |
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| CDS-3UTR GCA 90 bp | ATTCAAAATTGTGTGTTATCACAAAGCAGTTGTCAGTCTACAGGTAGAAGATCAAAGCTGCTGGTCCTGTaGCCACGAGAGAGGACGGTC | + |
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Preference number: 4 (lower is better) Translates to: IQNCVLSQSSCQSTGRRSKLLVL*PRERTV Trigger: GACCGTCCTCTCTCGTGGGCACAGGACCAGCAGCTT...TGATCTTCTACCTGTAGACTGACAACTGCTTTGTGATAACACACAATTTTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR GCA 90 bp | CTTCAAGTAGACTGTACACTTAAAACGTGGGCTTGTTCATGTATTCTTCCATTGGTGGTGTACCATTTCTaGAGCCGCAGCTTCCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: LQVDCTLKTWACSCILPLVVYHF*SRSFPC Trigger: ACAAGGGAAGCTGCGGCTGCAGAAATGGTACACCAC...CAATGGAAGAATACATGAACAAGCCCACGTTTTAAGTGTACAGTCTACTTGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159312.2 |
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| 3UTR CAA 72 bp | GAACAACATTATGAACTAACCAGTACCCCTGAGCTCTaGACTCTAGCTGCATATGTATCAAAAGATGGCCTA | + |
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Preference number: 4 (lower is better) Translates to: EQHYELTSTPEL*TLAAYVSKDGL Trigger: TAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR GCA 90 bp | CTGCAGCAATTATGTGAAACACCTAGAGCCCCAGTGAGTATTGATACACAGTATTTCAATGGCCTTGACTaGTGTTTTCTTGGATGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LQQLCETPRAPVSIDTQYFNGLD*CFLGCF Trigger: GAAACATCCAAGAAAACAGCAGTCAAGGCCATTGAA...ATACTGTGTATCAATACTCACTGGGGCTCTAGGTGTTTCACATAATTGCTGCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR TCA 90 bp | AAACACAGCAAGGAGCTATTCAATCTGCAGCAATTATGTGAAACACCTAGAGCCAAGAGCTCATTGTCTTaGTTTTCTATTGCACAGCAA | + |
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Preference number: 4 (lower is better) Translates to: KHSKELFNLQQLCETPRAKSSLS*FSIAQQ Trigger: TTGCTGTGCAATAGAAAATCAAGACAATGAGCTCTT...GGCTCTAGGTGTTTCACATAATTGCTGCAGATTGAATAGCTCCTTGCTGTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS CCA 90 bp | CAGTCAATGAAGCTGCTGGTCCTGTGCCCACGAGAGAGGACGGTCTaGATGATGTCGCGGGTGATCTTCTTCCTCTCCTTGTCAGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: QSMKLLVLCPRERTV*MMSRVIFFLSLSGS Trigger: ACTCCCTGACAAGGAGAGGAAGAAGATCACCCGCGACATCATCCAGACCGTCCTCTCTCGTGGGCACAGGACCAGCAGCTTCATTGACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000159312.2 ENSMUST00000160706.2 ENSMUST00000162342.8 |
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| CDS-3UTR CAA 90 bp | CCTATTGTCTTAACCACAGAAGTCCTAGCACTCAGGTACAACGGCCACCAAACCCAGCCGCAGCTTCCCTaGTCGACTGAAGAGCAAGAT | + |
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Preference number: 5 (lower is better) Translates to: PIVLTTEVLALRYNGHQTQPQLP*STEEQD Trigger: ATCTTGCTCTTCAGTCGACAAGGGAAGCTGCGGCTG...GGTTTGGTGGCCGTTGTACCTGAGTGCTAGGACTTCTGTGGTTAAGACAATAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR CAA 90 bp | CTGCAGCAATTATGTGAAACACCTAGAGCCCCAGTGAGTATTGATACACAGTATCAGCCGCAGCTTCCCTaGTCGACTGAAGAGCAAGAT | + |
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Preference number: 5 (lower is better) Translates to: LQQLCETPRAPVSIDTQYQPQLP*STEEQD Trigger: ATCTTGCTCTTCAGTCGACAAGGGAAGCTGCGGCTG...ATACTGTGTATCAATACTCACTGGGGCTCTAGGTGTTTCACATAATTGCTGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159312.2 ENSMUST00000162342.8 |
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| CDS-3UTR CAA 90 bp | GTCCACTGTATGAGATCTCCCTATTGTCTTAACCACAGAAGTCCTAGCACTCAGATCTTCTTCCTCTCCTaGTCAGGGAGTGTGGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: VHCMRSPYCLNHRSPSTQIFFLS*SGSVVY Trigger: GTACACCACACTCCCTGACAAGGAGAGGAAGAAGAT...CTGAGTGCTAGGACTTCTGTGGTTAAGACAATAGGGAGATCTCATACAGTGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR CAA 90 bp | CTTAACCACAGAAGTCCTAGCACTCAGGTACAACGGCCACCAAACCTCAACACTGAGTCTTCAATGGCCTaGACTGCTGTTTTCTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: LNHRSPSTQVQRPPNLNTESSMA*TAVFLD Trigger: ATCCAAGAAAACAGCAGTCAAGGCCATTGAAGACTC...AGTGTTGAGGTTTGGTGGCCGTTGTACCTGAGTGCTAGGACTTCTGTGGTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS-3UTR CAA 90 bp | ACACTTAAAACGTGGGCTTGTTCATGTATTCTTCCATTGTCTCTTGTAACATATATCTTCTTCCTCTCCTaGTCAGGGAGTGTGGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: TLKTWACSCILPLSLVTYIFFLS*SGSVVY Trigger: GTACACCACACTCCCTGACAAGGAGAGGAAGAAGAT...ATATGTTACAAGAGACAATGGAAGAATACATGAACAAGCCCACGTTTTAAGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159312.2 |
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| CDS-3UTR CAA 90 bp | AAACACAGCAAGGAGCTATTCAATCTGCAGCAATTATGTGAAACACCTAGAGCCCAAGAGCTCATTGTCTaGATTTTCTATTGCACAGCA | + |
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Preference number: 5 (lower is better) Translates to: KHSKELFNLQQLCETPRAQELIV*IFYCTA Trigger: TGCTGTGCAATAGAAAATCAAGACAATGAGCTCTTG...GGCTCTAGGTGTTTCACATAATTGCTGCAGATTGAATAGCTCCTTGCTGTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162342.8 |
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| CDS CCA 72 bp | AAGCTGCTGGTCCTGTGCCCACGAGAGAGGACGGTCTaGATGATGTCGCGGGTGATCTTCTTCCTCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: KLLVLCPRERTV*MMSRVIFFLSL Trigger: CAAGGAGAGGAAGAAGATCACCCGCGACATCATCCAGACCGTCCTCTCTCGTGGGCACAGGACCAGCAGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000159312.2 ENSMUST00000160706.2 ENSMUST00000162342.8 |
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| CDS CAA 72 bp | GTCTGGATGATGTCGCGGGTGATCTTCTTCCTCTCCTaGTCAGGGAGTGTGGTGTACCATTTCTGCAGCCGC | + |
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Preference number: 6 (lower is better) Translates to: VWMMSRVIFFLS*SGSVVYHFCSR Trigger: GCGGCTGCAGAAATGGTACACCACACTCCCTGACAAGGAGAGGAAGAAGATCACCCGCGACATCATCCAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000159312.2 ENSMUST00000160706.2 ENSMUST00000162342.8 |
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| CDS GCA 72 bp | TTCCTCTCCTTGTCAGGGAGTGTGGTGTACCATTTCTaGAGCCGCAGCTTCCCTTGTCGACTGAAGAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: FLSLSGSVVYHF*SRSFPCRLKSK Trigger: CTTGCTCTTCAGTCGACAAGGGAAGCTGCGGCTGCAGAAATGGTACACCACACTCCCTGACAAGGAGAGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000159312.2 ENSMUST00000160706.2 ENSMUST00000162342.8 |
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