Pregenerated sensors for AP1S2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031367Ensembl transcript IDs: ENSMUST00000033734.14, ENSMUST00000069041.15, ENSMUST00000112294.9, ENSMUST00000140845.2
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAAGACCAATGTTTTGTGAAGTTTCAGATGGTAATGGAGAGAGCTaGCCTGTACAGCTGCCTAACACTACATTTCCTAAGACATTTTAT | + |
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Preference number: 1 (lower is better) Translates to: ERPMFCEVSDGNGES*PVQLPNTTFPKTFY Trigger: ATAAAATGTCTTAGGAAATGTAGTGTTAGGCAGCTGTACAGGTCAGCTCTCTCCATTACCATCTGAAACTTCACAAAACATTGGTCTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR CCA 90 bp | AGAACATTTATTACATTAATTGGTGATGTGATAAGACAGTTCCGGTaGCTTGAAAGTTGTTCACAATCACAGCAAAGCTTACTCCAGCCT | + |
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Preference number: 1 (lower is better) Translates to: RTFITLIGDVIRQFR*LESCSQSQQSLLQP Trigger: AGGCTGGAGTAAGCTTTGCTGTGATTGTGAACAACTTTCAAGCCACCGGAACTGTCTTATCACATCACCAATTAATGTAATAAATGTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 |
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| 3UTR-3UTR TCA 90 bp | CCAACCAATGCCACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCCCAACGACTAGACAGTaGCAGGAAAGAATAGGGAGC | + |
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Preference number: 2 (lower is better) Translates to: PTNATLLSQLSLCYMKGIPTTRQ*QERIGS Trigger: GCTCCCTATTCTTTCCTGTCACTGTCTAGTCGTTGG...GATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTGGCATTGGTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR TCA 90 bp | GGCTTTAACAAGCACCCCGGAAGGAACATTCATGCTTTAGATAATGACTTTATGTTGGGTAGGCCTGAATaGAGCAGCTTAGCAAAACAG | + |
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Preference number: 2 (lower is better) Translates to: GFNKHPGRNIHALDNDFMLGRPE*SSLAKQ Trigger: CTGTTTTGCTAAGCTGCTTCATTCAGGCCTACCCAA...CATAAAGTCATTATCTAAAGCATGAATGTTCCTTCCGGGGTGCTTGTTAAAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR TCA 90 bp | AACCAATGCCACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCTTTTGGGTAGGCCTGAATaGAGCAGCTTAGCAAAACAG | + |
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Preference number: 2 (lower is better) Translates to: NQCHFAQSTLTLLYERYLLGRPE*SSLAKQ Trigger: CTGTTTTGCTAAGCTGCTTCATTCAGGCCTACCCAA...AAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTGGCATTGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR GCA 90 bp | GCAACATTAAAATCAGGTGAACAACATGTAGTGTGGGAGGATGGGAAAAATGGATATAGTAACTCATCTTaGTCCTGCATCAGCCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: ATLKSGEQHVVWEDGKNGYSNSS*SCISLP Trigger: TGGGAGGCTGATGCAGGAGCAAGATGAGTTACTATA...TCCATTTTTCCCATCCTCCCACACTACATGTTGTTCACCTGATTTTAATGTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR-3UTR TCA 90 bp | CACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCTTTTAAGCTGTTTGGGTAGGCCTGAATaGAGCAGCTTAGCAAAACAG | + |
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Preference number: 2 (lower is better) Translates to: HFAQSTLTLLYERYLLSCLGRPE*SSLAKQ Trigger: CTGTTTTGCTAAGCTGCTTCATTCAGGCCTACCCAA...ACAGCTTAAAAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR GCA 90 bp | AACCAATGCCACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCTTTATAGGGCCAACCAATaGCACTTTGCTCAGTCAACT | + |
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Preference number: 2 (lower is better) Translates to: NQCHFAQSTLTLLYERYLYRANQ*HFAQST Trigger: AGTTGACTGAGCAAAGTGGCATTGGTTGGCCCTATA...AAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTGGCATTGGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR CAA 90 bp | CCTTCTGAAGTTCCTAGAGTTTTTGGCATATTTAGTTTTTGTCTTTaGAGACAGGGATGCCCTAGGTACTATAGTAACTCATCTTGCTCC | + |
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Preference number: 2 (lower is better) Translates to: PSEVPRVFGIFSFCL*RQGCPRYYSNSSCS Trigger: GGAGCAAGATGAGTTACTATAGTACCTAGGGCATCCCTGTCTCAAAAGACAAAAACTAAATATGCCAAAAACTCTAGGAACTTCAGAAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR-3UTR TCA 90 bp | GGCTTTAACAAGCACCCCGGAAGGAACATTCATGCTTTAGATAATGACTTTATGTTGAAAACACGATTATaGCCACCAAAACTTCACCTC | + |
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Preference number: 2 (lower is better) Translates to: GFNKHPGRNIHALDNDFMLKTRL*PPKLHL Trigger: GAGGTGAAGTTTTGGTGGTCATAATCGTGTTTTCAA...CATAAAGTCATTATCTAAAGCATGAATGTTCCTTCCGGGGTGCTTGTTAAAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR GCA 90 bp | CACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCTTTTAAGCTGTTATAGGGCCAACCAATaGCACTTTGCTCAGTCAACT | + |
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Preference number: 2 (lower is better) Translates to: HFAQSTLTLLYERYLLSCYRANQ*HFAQST Trigger: AGTTGACTGAGCAAAGTGGCATTGGTTGGCCCTATA...ACAGCTTAAAAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR CAA 90 bp | AAATATAGGGCCAACCAATGCCACTTTGCTCAGTCAACTCTCACTTaGCTATATGAAAGGTATCTTTTAAGCTGTCATAAGACTTCCAAC | + |
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Preference number: 2 (lower is better) Translates to: KYRANQCHFAQSTLT*LYERYLLSCHKTSN Trigger: GTTGGAAGTCTTATGACAGCTTAAAAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTGGCATTGGTTGGCCCTATATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR TCA 90 bp | GCAACATTAAAATCAGGTGAACAACATGTAGTGTGGGAGGATGGGAAAAATGGATATCCTACTACATTTTaGTGCATGTCTGTACTTCCA | + |
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Preference number: 2 (lower is better) Translates to: ATLKSGEQHVVWEDGKNGYPTTF*CMSVLP Trigger: TGGAAGTACAGACATGCATCAAAATGTAGTAGGATA...TCCATTTTTCCCATCCTCCCACACTACATGTTGTTCACCTGATTTTAATGTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR-3UTR GCA 90 bp | CACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCTTTTAAGCTGTCAACCAATGCCACTTTaGTCAGTCAACTCTCACTTT | + |
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Preference number: 2 (lower is better) Translates to: HFAQSTLTLLYERYLLSCQPMPL*SVNSHF Trigger: AAAGTGAGAGTTGACTGAGCAAAGTGGCATTGGTTG...ACAGCTTAAAAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR TCA 90 bp | CACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCTTTTAAGCTGTTTGAAAACACGATTATaGCCACCAAAACTTCACCTC | + |
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Preference number: 2 (lower is better) Translates to: HFAQSTLTLLYERYLLSCLKTRL*PPKLHL Trigger: GAGGTGAAGTTTTGGTGGTCATAATCGTGTTTTCAA...ACAGCTTAAAAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR GCA 90 bp | TTGGAAAGAGAAAAGCACACCACAGTGTTGCAGAACATTTATTACATTAATTGGCAACCAATGCCACTTTaGTCAGTCAACTCTCACTTT | + |
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Preference number: 2 (lower is better) Translates to: LEREKHTTVLQNIYYINWQPMPL*SVNSHF Trigger: AAAGTGAGAGTTGACTGAGCAAAGTGGCATTGGTTG...CCAATTAATGTAATAAATGTTCTGCAACACTGTGGTGTGCTTTTCTCTTTCCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069041.15 |
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| 3UTR-3UTR TCA 90 bp | TGGTTTTCTTCAACAGTGGAAGATCAAACTACATTAAATATTGTGGTGCTCCTATTTGGTAAACATTTGTaGTTGTTCCCGGTCTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: WFSSTVEDQTTLNIVVLLFGKHL*LFPVFL Trigger: GAGAAAGACCGGGAACAATCACAAATGTTTACCAAA...TAGGAGCACCACAATATTTAATGTAGTTTGATCTTCCACTGTTGAAGAAAACCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR-3UTR CCA 90 bp | TGGTTTTCTTCAACAGTGGAAGATCAAACTACATTAAATATTGTGGTGCTCCTAAAAAATATCCCAAGGTaGGGTCTGAAATGGACCTTA | + |
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Preference number: 2 (lower is better) Translates to: WFSSTVEDQTTLNIVVLLKNIPR*GLKWTL Trigger: TAAGGTCCATTTCAGACCCCACCTTGGGATATTTTT...TAGGAGCACCACAATATTTAATGTAGTTTGATCTTCCACTGTTGAAGAAAACCA 37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR GCA 72 bp | TTTGTGCGTGTGTGCGTGCGTGCGTGCGTGCGTGCGTaGAAGCGCCATCACATTTCGCTGCAGGGCTGGGGT | + |
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Preference number: 3 (lower is better) Translates to: FVRVCVRACVRA*KRHHISLQGWG Trigger: ACCCCAGCCCTGCAGCGAAATGTGATGGCGCTTGCACGCACGCACGCACGCACGCACGCACACACGCACAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069041.15 |
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| 3UTR TCA 72 bp | CATCTTGCTCCTGCATCAGCCTCCCAGGTACTAGGATaGCAGGCATGCACTACCATGCCACTTAAGTTACTG | + |
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Preference number: 3 (lower is better) Translates to: HLAPASASQVLG*QACTTMPLKLL Trigger: CAGTAACTTAAGTGGCATGGTAGTGCATGCCTGTCATCCTAGTACCTGGGAGGCTGATGCAGGAGCAAGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR-3UTR CAA 90 bp | CACGATTATGACCACCAAAACTTCACCTCAGGGAGTCAAATGTTACTTGGCCTTATCCAATATGGGTATTaGGTATCAATTTGGTCGCTG | + |
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Preference number: 3 (lower is better) Translates to: HDYDHQNFTSGSQMLLGLIQYGY*VSIWSL Trigger: CAGCGACCAAATTGATACCAAATACCCATATTGGAT...AAGGCCAAGTAACATTTGACTCCCTGAGGTGAAGTTTTGGTGGTCATAATCGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR CAA 90 bp | CACGATTATGACCACCAAAACTTCACCTCAGGGAGTCAAATGTTACTTGGCCTTGGAGTCAAATGTTACTaGGCCTTAAAAATTATGTGC | + |
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Preference number: 3 (lower is better) Translates to: HDYDHQNFTSGSQMLLGLGVKCY*ALKIMC Trigger: GCACATAATTTTTAAGGCCAAGTAACATTTGACTCC...AAGGCCAAGTAACATTTGACTCCCTGAGGTGAAGTTTTGGTGGTCATAATCGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR CAA 90 bp | GCAACATTAAAATCAGGTGAACAACATGTAGTGTGGGAGGATGGGAAAAATGGATTTAGTTTTTGTCTTTaGAGACAGGGATGCCCTAGG | + |
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Preference number: 3 (lower is better) Translates to: ATLKSGEQHVVWEDGKNGFSFCL*RQGCPR Trigger: CCTAGGGCATCCCTGTCTCAAAAGACAAAAACTAAA...TCCATTTTTCCCATCCTCCCACACTACATGTTGTTCACCTGATTTTAATGTTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR-3UTR CAA 90 bp | CCAACCAATGCCACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCGGAGTCAAATGTTACTaGGCCTTAAAAATTATGTGC | + |
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Preference number: 3 (lower is better) Translates to: PTNATLLSQLSLCYMKGIGVKCY*ALKIMC Trigger: GCACATAATTTTTAAGGCCAAGTAACATTTGACTCC...GATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTGGCATTGGTTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR GCA 72 bp | TTTGGCATATTTAGTTTTTGTCTTTTGAGACAGGGATaGCCTAGGTACTATAGTAACTCATCTTGCTCCTGC | + |
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Preference number: 3 (lower is better) Translates to: FGIFSFCLLRQG*PRYYSNSSCSC Trigger: GCAGGAGCAAGATGAGTTACTATAGTACCTAGGGCATCCCTGTCTCAAAAGACAAAAACTAAATATGCCAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR-3UTR CAA 90 bp | AACCAATGCCACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCTTGGAGTCAAATGTTACTaGGCCTTAAAAATTATGTGC | + |
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Preference number: 3 (lower is better) Translates to: NQCHFAQSTLTLLYERYLGVKCY*ALKIMC Trigger: GCACATAATTTTTAAGGCCAAGTAACATTTGACTCC...AAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTGGCATTGGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR CAA 90 bp | TGGTTTTCTTCAACAGTGGAAGATCAAACTACATTAAATATTGTGGTGCTCCTAGCATCAGATTTGCTTTaGTTCTTTGGTTTGTGGCTG | + |
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Preference number: 3 (lower is better) Translates to: WFSSTVEDQTTLNIVVLLASDLL*FFGLWL Trigger: CAGCCACAAACCAAAGAACAAAAGCAAATCTGATGC...TAGGAGCACCACAATATTTAATGTAGTTTGATCTTCCACTGTTGAAGAAAACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| 3UTR CCA 72 bp | ATTACATTAATTGGTGATGTGATAAGACAGTTCCGGTaGCTTGAAAGTTGTTCACAATCACAGCAAAGCTTA | + |
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Preference number: 3 (lower is better) Translates to: ITLIGDVIRQFR*LESCSQSQQSL Trigger: TAAGCTTTGCTGTGATTGTGAACAACTTTCAAGCCACCGGAACTGTCTTATCACATCACCAATTAATGTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| 3UTR-3UTR CAA 90 bp | CACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCTTTTAAGCTGTCAGTCAACTCTCACTTaGCTATATGAAAGGTATCTT | + |
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Preference number: 3 (lower is better) Translates to: HFAQSTLTLLYERYLLSCQSTLT*LYERYL Trigger: AAGATACCTTTCATATAGCAAAGTGAGAGTTGACTG...ACAGCTTAAAAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033734.14 ENSMUST00000069041.15 ENSMUST00000140845.2 |
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| CDS-3UTR GCA 90 bp | CCAACCAATGCCACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCGTTTCAGCTTCCTCCTaGAGGAGATCGGCCTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PTNATLLSQLSLCYMKGIVSASS*RRSACS Trigger: TGAGCAGGCCGATCTCCTGCAGGAGGAAGCTGAAAC...GATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTGGCATTGGTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033734.14 |
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| CDS-3UTR GCA 90 bp | GCAACATTAAAATCAGGTGAACAACATGTAGTGTGGGAGGATGGGAAAAATGGAGTCTCTGTTTTCTCCTaGAGGAGATCGGCCTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: ATLKSGEQHVVWEDGKNGVSVFS*RRSACS Trigger: TGAGCAGGCCGATCTCCTGCAGGAGAAAACAGAGAC...TCCATTTTTCCCATCCTCCCACACTACATGTTGTTCACCTGATTTTAATGTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112294.9 |
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| CDS-3UTR GCA 90 bp | GGCTTTAACAAGCACCCCGGAAGGAACATTCATGCTTTAGATAATGACTTTATGGGTTTCAGCTTCTTTTaGATCCTCCTGCAGGAGATC | + |
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Preference number: 4 (lower is better) Translates to: GFNKHPGRNIHALDNDFMGFSFF*ILLQEI Trigger: GATCTCCTGCAGGAGGATGCAAAAGAAGCTGAAACC...CATAAAGTCATTATCTAAAGCATGAATGTTCCTTCCGGGGTGCTTGTTAAAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069041.15 |
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| CDS-3UTR CCA 90 bp | CACTTTGCTCAGTCAACTCTCACTTTGCTATATGAAAGGTATCTTTTAAGCTGTCCCCATTCTTCATTCTaGCTCTCCTGCAGGAGATCG | + |
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Preference number: 4 (lower is better) Translates to: HFAQSTLTLLYERYLLSCPHSSF*LSCRRS Trigger: CGATCTCCTGCAGGAGAGCCAGAATGAAGAATGGGG...ACAGCTTAAAAGATACCTTTCATATAGCAAAGTGAGAGTTGACTGAGCAAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140845.2 |
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| CDS-3UTR CCA 90 bp | GGCTTTAACAAGCACCCCGGAAGGAACATTCATGCTTTAGATAATGACTTTATGTTCAAGAACACTACGTaGGGTTTCAGCTTCTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: GFNKHPGRNIHALDNDFMFKNTT*GFSFFC Trigger: GCAAAAGAAGCTGAAACCCCACGTAGTGTTCTTGAA...CATAAAGTCATTATCTAAAGCATGAATGTTCCTTCCGGGGTGCTTGTTAAAGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069041.15 |
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| CDS-3UTR CAA 90 bp | GGCTTTAACAAGCACCCCGGAAGGAACATTCATGCTTTAGATAATGACTTTATGGGGTTTCAGCTTCTTTaGCATCCTCCTGCAGGAGAT | + |
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Preference number: 5 (lower is better) Translates to: GFNKHPGRNIHALDNDFMGFQLL*HPPAGD Trigger: ATCTCCTGCAGGAGGATGCAAAAGAAGCTGAAACCC...CATAAAGTCATTATCTAAAGCATGAATGTTCCTTCCGGGGTGCTTGTTAAAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069041.15 |
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