Pregenerated sensors for AP1S1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004849Ensembl transcript IDs: ENSMUST00000111080.8, ENSMUST00000129356.2, ENSMUST00000144303.2, ENSMUST00000150603.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCCCATGCCACCTGCTTGGCTCCTGCCGCACCCTCACCGTGGAGTaGAGGAAAGGGGACAGGGTCAGTGTCCCAGAAAGCAGGCCTCTC | + |
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Preference number: 1 (lower is better) Translates to: GPCHLLGSCRTLTVE*RKGDRVSVPESRPL Trigger: GAGAGGCCTGCTTTCTGGGACACTGACCCTGTCCCCTTTCCTCCACTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTGGCATGGGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR CCA 90 bp | CACTTGGCCCATGCCACCTGCTTGGCTCCTGCCGCACCCTCACCGTaGAGTGGAGGAAAGGGGACAGGGTCAGTGTCCCAGAAAGCAGGC | + |
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Preference number: 1 (lower is better) Translates to: HLAHATCLAPAAPSP*SGGKGTGSVSQKAG Trigger: GCCTGCTTTCTGGGACACTGACCCTGTCCCCTTTCCTCCACTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTGGCATGGGCCAAGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR GCA 90 bp | GCCATACAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCAACAATaGTTCTTCAAAGGAAGGAAAATGGAAGCCACTGAGCACCCCCAT | + |
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Preference number: 1 (lower is better) Translates to: AIQGTWRARDGWAQQ*FFKGRKMEATEHPH Trigger: ATGGGGGTGCTCAGTGGCTTCCATTTTCCTTCCTTTGAAGAAGCATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR CCA 90 bp | TATATATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTaGGCTCAACAATGCTTCTTCAAAGGAAGGAAAATGGAAGCCACT | + |
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Preference number: 1 (lower is better) Translates to: YIFTAIQGTWRARDG*AQQCFFKGRKMEAT Trigger: AGTGGCTTCCATTTTCCTTCCTTTGAAGAAGCATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAATATATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR CCA 90 bp | TATTTATATATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATaGCTGGGCTCAACAATGCTTCTTCAAAGGAAGGAAAATGGAAGC | + |
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Preference number: 1 (lower is better) Translates to: YLYIYSHTGHMEGEG*LGSTMLLQRKENGS Trigger: GCTTCCATTTTCCTTCCTTTGAAGAAGCATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAATATATAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR-3UTR TCA 90 bp | CAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCAACAATGCTTCTTCAAAGGAGAAAATGGAAGCCACTaGGCACCCCCATCCAGGTCA | + |
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Preference number: 2 (lower is better) Translates to: QGTWRARDGWAQQCFFKGENGSH*APPSRS Trigger: TGACCTGGATGGGGGTGCTCAGTGGCTTCCATTTTC...TCCTTTGAAGAAGCATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR-3UTR CCA 90 bp | TTTATATATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCGAGGGAAGGGAGATTTaGAAGGAGGGAATGTTTGTA | + |
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Preference number: 2 (lower is better) Translates to: FIYLQPYRAHGGRGMAGLEGREI*KEGMFV Trigger: TACAAACATTCCCTCCTTCCAAATCTCCCTTCCCTC...GAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAATATATAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR GCA 72 bp | AGGCAGCCACTTGGCCCATGCCACCTGCTTGGCTCCTaGCGCACCCTCACCGTGGAGTGGAGGAAAGGGGAC | + |
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Preference number: 3 (lower is better) Translates to: RQPLGPCHLLGS*RTLTVEWRKGD Trigger: GTCCCCTTTCCTCCACTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTGGCATGGGCCAAGTGGCTGCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR CCA 72 bp | CATGCCACCTGCTTGGCTCCTGCCGCACCCTCACCGTaGAGTGGAGGAAAGGGGACAGGGTCAGTGTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: HATCLAPAAPSP*SGGKGTGSVSQ Trigger: CTGGGACACTGACCCTGTCCCCTTTCCTCCACTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTGGCATG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR CCA 72 bp | CACCTGCTTGGCTCCTGCCGCACCCTCACCGTGGAGTaGAGGAAAGGGGACAGGGTCAGTGTCCCAGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: HLLGSCRTLTVE*RKGDRVSVPES Trigger: GCTTTCTGGGACACTGACCCTGTCCCCTTTCCTCCACTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR GCA 72 bp | AAAGGAGATAAAGGCAGCCACTTGGCCCATGCCACCTaGTTGGCTCCTGCCGCACCCTCACCGTGGAGTGGA | + |
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Preference number: 3 (lower is better) Translates to: KGDKGSHLAHAT*LAPAAPSPWSG Trigger: TCCACTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTGGCATGGGCCAAGTGGCTGCCTTTATCTCCTTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR-3UTR CAA 90 bp | CAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCAACAATGCTTCTTCAAAGGACCCCCAAGTGCTGTCTaGTCTTGTCTTCCCCCGGTC | + |
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Preference number: 3 (lower is better) Translates to: QGTWRARDGWAQQCFFKGPPSAV*SCLPPV Trigger: GACCGGGGGAAGACAAGACAAGACAGCACTTGGGGG...TCCTTTGAAGAAGCATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR-3UTR CAA 90 bp | ATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCAACAATGAAGTGCTGTCTTGTCTaGTCTTCCCCCGGTCCACAG | + |
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Preference number: 3 (lower is better) Translates to: IYSHTGHMEGEGWLGSTMKCCLV*SSPGPQ Trigger: CTGTGGACCGGGGGAAGACAAGACAAGACAGCACTT...CATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR GCA 72 bp | GGCACATGGAGGGCGAGGGATGGCTGGGCTCAACAATaGTTCTTCAAAGGAAGGAAAATGGAAGCCACTGAG | + |
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Preference number: 3 (lower is better) Translates to: GTWRARDGWAQQ*FFKGRKMEATE Trigger: CTCAGTGGCTTCCATTTTCCTTCCTTTGAAGAAGCATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR CCA 72 bp | ACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTaGGCTCAACAATGCTTCTTCAAAGGAAGGAAAATG | + |
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Preference number: 3 (lower is better) Translates to: TAIQGTWRARDG*AQQCFFKGRKM Trigger: CATTTTCCTTCCTTTGAAGAAGCATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| 3UTR CCA 72 bp | ATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATaGCTGGGCTCAACAATGCTTCTTCAAAGGAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: IYSHTGHMEGEG*LGSTMLLQRKE Trigger: TTCCTTCCTTTGAAGAAGCATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR CCA 90 bp | CAGCCACTTGGCCCATGCCACCTGCTTGGCTCCTGCCGCACCCTCACCGTGGAGATCAGCTCGTTGTCTTaGCCTTCGATGGCGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: QPLGPCHLLGSCRTLTVEISSLS*PSMAQQ Trigger: CTGCTGCGCCATCGAAGGCCAAGACAACGAGCTGAT...CTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTGGCATGGGCCAAGTGGCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR TCA 90 bp | CAGCCACTTGGCCCATGCCACCTGCTTGGCTCCTGCCGCACCCTCACCGTGGAGCTTCCTCTCCTTGTCTaGGGTGGCCAGGTACCATTT | + |
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Preference number: 4 (lower is better) Translates to: QPLGPCHLLGSCRTLTVELPLLV*GGQVPF Trigger: AAATGGTACCTGGCCACCTCAGACAAGGAGAGGAAG...CTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTGGCATGGGCCAAGTGGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR CCA 90 bp | CAGCCACTTGGCCCATGCCACCTGCTTGGCTCCTGCCGCACCCTCACCGTGGAGTTCTTGGAGGTGTCCTaGACATCCCCACCCATCAGA | + |
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Preference number: 4 (lower is better) Translates to: QPLGPCHLLGSCRTLTVEFLEVS*TSPPIR Trigger: TCTGATGGGTGGGGATGTCCAGGACACCTCCAAGAA...CTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTGGCATGGGCCAAGTGGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR CCA 90 bp | CTGCCGCACCCTCACCGTGGAGTGGAGGAAAGGGGACAGGGTCAGTGTCCCAGATGTCTTGGCCTTCGATaGCGCAGCAGAAATAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: LPHPHRGVEERGQGQCPRCLGLR*RSRNRD Trigger: GTCTCTATTTCTGCTGCGCCATCGAAGGCCAAGACA...TCTGGGACACTGACCCTGTCCCCTTTCCTCCACTCCACGGTGAGGGTGCGGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR GCA 90 bp | ATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCAACAATGTCTCCTCCAGGACACTaGGCGGCGACTCATCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: IYSHTGHMEGEGWLGSTMSPPGH*AATHPP Trigger: AGGAGGATGAGTCGCCGCGCAGTGTCCTGGAGGAGA...CATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR GCA 90 bp | TCTGGGGGAGAGGTGAGAGAAACAGCCCCCAAGTGCTGTCTTGTCTTGTCTTCCGACTCATCCTCCTCCTaGAGCAGGTCAGCCTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: SGGEVRETAPKCCLVLSSDSSSS*SRSACS Trigger: TGAGCAGGCTGACCTGCTGCAGGAGGAGGATGAGTC...GGAAGACAAGACAAGACAGCACTTGGGGGCTGTTTCTCTCACCTCTCCCCCAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR TCA 90 bp | TTTATATATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCGGATCAGCTCCAGTGTaGTCAGCTCGTTGTCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: FIYLQPYRAHGGRGMAGLGSAPV*SARCLG Trigger: GCCAAGACAACGAGCTGATCACACTGGAGCTGATCC...GAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAATATATAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR GCA 90 bp | TTTATATATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCTGCAGCAGGTCAGCCTaGTCAATGGCCTTGAGCACA | + |
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Preference number: 4 (lower is better) Translates to: FIYLQPYRAHGGRGMAGLCSRSA*SMALST Trigger: TGTGCTCAAGGCCATTGAGCAGGCTGACCTGCTGCA...GAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAATATATAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR CCA 90 bp | ATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCAACAATGAGCTCTACGTATCGGTaGATCAGCTCCAGTGTGATC | + |
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Preference number: 4 (lower is better) Translates to: IYSHTGHMEGEGWLGSTMSSTYR*ISSSVI Trigger: GATCACACTGGAGCTGATCCACCGATACGTAGAGCT...CATTGTTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR GCA 90 bp | TATATATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCAAAGCCGAAGTTTTCCCTaGCGGCTGAACAGTAGCATG | + |
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Preference number: 4 (lower is better) Translates to: YIFTAIQGTWRARDGWAQSRSFP*RLNSSM Trigger: CATGCTACTGTTCAGCCGGCAGGGAAAACTTCGGCT...TTGAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAATATATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR CCA 90 bp | GGGATGGCTGGGCTCAACAATGCTTCTTCAAAGGAAGGAAAATGGAAGCCACTGTCTCCTTGTCTGAGGTaGCCAGGTACCATTTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: GMAGLNNASSKEGKWKPLSPCLR*PGTIFV Trigger: TACAAAAATGGTACCTGGCCACCTCAGACAAGGAGA...CAGTGGCTTCCATTTTCCTTCCTTTGAAGAAGCATTGTTGAGCCCAGCCATCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR CAA 90 bp | CAGCCACTTGGCCCATGCCACCTGCTTGGCTCCTGCCGCACCCTCACCGTGGAGGCCTGCTCAATGGCCTaGAGCACACTCTTCTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: QPLGPCHLLGSCRTLTVEACSMA*STLFLE Trigger: CTCCAAGAAGAGTGTGCTCAAGGCCATTGAGCAGGC...CTCCACGGTGAGGGTGCGGCAGGAGCCAAGCAGGTGGCATGGGCCAAGTGGCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS GCA 90 bp | AGGACACTGCGCGGCGACTCATCCTCCTCCTGCAGCAGGTCAGCCTaGTCAATGGCCTTGAGCACACTCTTCTTGGAGGTGTCCTGGACA | + |
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Preference number: 5 (lower is better) Translates to: RTLRGDSSSSCSRSA*SMALSTLFLEVSWT Trigger: TGTCCAGGACACCTCCAAGAAGAGTGTGCTCAAGGCCATTGAGCAGGCTGACCTGCTGCAGGAGGAGGATGAGTCGCCGCGCAGTGTCCT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS TCA 90 bp | AGCCGAAGTTTTCCCTGCCGGCTGAACAGTAGCATGAATCGCATCTaGGCCAGAACTCCGGGTGAGCTGTCAAGGAAGCGAGACAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: SRSFPCRLNSSMNRI*ARTPGELSRKRDRR Trigger: CCTCCTGTCTCGCTTCCTTGACAGCTCACCCGGAGTTCTGGCTCAGATGCGATTCATGCTACTGTTCAGCCGGCAGGGAAAACTTCGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150603.8 |
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| CDS-3UTR CAA 90 bp | GAGAGAAACAGCCCCCAAGTGCTGTCTTGTCTTGTCTTCCCCCGGTCCACAGGGATCTTCTTCCTCTCCTaGTCTGAGGTGGCCAGGTAC | + |
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Preference number: 5 (lower is better) Translates to: ERNSPQVLSCLVFPRSTGIFFLS*SEVARY Trigger: GTACCTGGCCACCTCAGACAAGGAGAGGAAGAAGAT...CCCTGTGGACCGGGGGAAGACAAGACAAGACAGCACTTGGGGGCTGTTTCTCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS-3UTR CAA 90 bp | TTTATATATTTACAGCCATACAGGGCACATGGAGGGCGAGGGATGGCTGGGCTCGATCAGCTCGTTGTCTaGGCCTTCGATGGCGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: FIYLQPYRAHGGRGMAGLDQLVV*AFDGAA Trigger: TGCTGCGCCATCGAAGGCCAAGACAACGAGCTGATC...GAGCCCAGCCATCCCTCGCCCTCCATGTGCCCTGTATGGCTGTAAATATATAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS CCA 90 bp | TCACATACGCTGCCGAAGTACTTGTCCAAGAGCTCTACGTATCGGTaGATCAGCTCCAGTGTGATCAGCTCGTTGTCTTGGCCTTCGATG | + |
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Preference number: 5 (lower is better) Translates to: SHTLPKYLSKSSTYR*ISSSVISSLSWPSM Trigger: CATCGAAGGCCAAGACAACGAGCTGATCACACTGGAGCTGATCCACCGATACGTAGAGCTCTTGGACAAGTACTTCGGCAGCGTATGTGA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111080.8 ENSMUST00000144303.2 ENSMUST00000150603.8 |
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| CDS TCA 90 bp | AGTACTTGTCCAAGAGCTCTACGTATCGGTGGATCAGCTCCAGTGTaGTCAGCTCGTTGTCTTGGCCTTCGATGGCGCAGCAGAAATAGA | + |
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Preference number: 5 (lower is better) Translates to: STCPRALRIGGSAPV*SARCLGLRWRSRNR Trigger: TCTATTTCTGCTGCGCCATCGAAGGCCAAGACAACGAGCTGATCACACTGGAGCTGATCCACCGATACGTAGAGCTCTTGGACAAGTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111080.8 ENSMUST00000144303.2 ENSMUST00000150603.8 |
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| CDS-3UTR CAA 90 bp | ATGGCTGGGCTCAACAATGCTTCTTCAAAGGAAGGAAAATGGAAGCCACTGAGCAGGAAGCTGCACATTTaGGGCTTTCTAGCCAGGACG | + |
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Preference number: 5 (lower is better) Translates to: MAGLNNASSKEGKWKPLSRKLHI*GFLART Trigger: CGTCCTGGCTAGAAAGCCCAAAATGTGCAGCTTCCT...GCTCAGTGGCTTCCATTTTCCTTCCTTTGAAGAAGCATTGTTGAGCCCAGCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS GCA 72 bp | CGCGGCGACTCATCCTCCTCCTGCAGCAGGTCAGCCTaGTCAATGGCCTTGAGCACACTCTTCTTGGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: RGDSSSSCSRSA*SMALSTLFLEV Trigger: CACCTCCAAGAAGAGTGTGCTCAAGGCCATTGAGCAGGCTGACCTGCTGCAGGAGGAGGATGAGTCGCCGCG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111080.8 |
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| CDS TCA 72 bp | CCAAGAGCTCTACGTATCGGTGGATCAGCTCCAGTGTaGTCAGCTCGTTGTCTTGGCCTTCGATGGCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PRALRIGGSAPV*SARCLGLRWRS Trigger: GCTGCGCCATCGAAGGCCAAGACAACGAGCTGATCACACTGGAGCTGATCCACCGATACGTAGAGCTCTTGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111080.8 ENSMUST00000144303.2 ENSMUST00000150603.8 |
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| CDS TCA 72 bp | TTTCCCTGCCGGCTGAACAGTAGCATGAATCGCATCTaGGCCAGAACTCCGGGTGAGCTGTCAAGGAAGCGA | + |
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Preference number: 6 (lower is better) Translates to: FPCRLNSSMNRI*ARTPGELSRKR Trigger: TCGCTTCCTTGACAGCTCACCCGGAGTTCTGGCTCAGATGCGATTCATGCTACTGTTCAGCCGGCAGGGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150603.8 |
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| CDS CAA 72 bp | TCGGTGGATCAGCTCCAGTGTGATCAGCTCGTTGTCTaGGCCTTCGATGGCGCAGCAGAAATAGAGACTGGC | + |
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Preference number: 6 (lower is better) Translates to: SVDQLQCDQLVV*AFDGAAEIETG Trigger: GCCAGTCTCTATTTCTGCTGCGCCATCGAAGGCCAAGACAACGAGCTGATCACACTGGAGCTGATCCACCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111080.8 ENSMUST00000144303.2 ENSMUST00000150603.8 |
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| CDS CCA 72 bp | CTGCCGAAGTACTTGTCCAAGAGCTCTACGTATCGGTaGATCAGCTCCAGTGTGATCAGCTCGTTGTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: LPKYLSKSSTYR*ISSSVISSLSW Trigger: CCAAGACAACGAGCTGATCACACTGGAGCTGATCCACCGATACGTAGAGCTCTTGGACAAGTACTTCGGCAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111080.8 ENSMUST00000144303.2 ENSMUST00000150603.8 |
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| CDS CAA 90 bp | CTCTACGTATCGGTGGATCAGCTCCAGTGTGATCAGCTCGTTGTCTaGGCCTTCGATGGCGCAGCAGAAATAGAGACTGGCGTATCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LYVSVDQLQCDQLVV*AFDGAAEIETGVSL Trigger: AAGAGATACGCCAGTCTCTATTTCTGCTGCGCCATCGAAGGCCAAGACAACGAGCTGATCACACTGGAGCTGATCCACCGATACGTAGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111080.8 ENSMUST00000144303.2 ENSMUST00000150603.8 |
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| CDS CAA 72 bp | GAAGCTGCACATTTTGGGCTTTCTAGCCAGGACGACTaGCATGAGCTCTCGGACCATCTTCTTCCTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: EAAHFGLSSQDD*HELSDHLLPLL Trigger: AAGGAGAGGAAGAAGATGGTCCGAGAGCTCATGCAAGTCGTCCTGGCTAGAAAGCCCAAAATGTGCAGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111080.8 ENSMUST00000129356.2 ENSMUST00000144303.2 ENSMUST00000150603.8 |
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| CDS CAA 72 bp | AAGATGATGTCCAACTCACATACGCTGCCGAAGTACTaGTCCAAGAGCTCTACGTATCGGTGGATCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: KMMSNSHTLPKY*SKSSTYRWISS Trigger: GGAGCTGATCCACCGATACGTAGAGCTCTTGGACAAGTACTTCGGCAGCGTATGTGAGTTGGACATCATCTT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111080.8 ENSMUST00000144303.2 ENSMUST00000150603.8 |
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