RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AOC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029811

Ensembl transcript IDs: ENSMUST00000031835.14, ENSMUST00000162948.7, ENSMUST00000167529.3, ENSMUST00000204856.2

Found 243 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAGAGAATCTGGGGATATaGTTCAGAGGCTGGGGTCAG +
Preference number: 2 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRENLGI*FRGWGQ
Trigger: CTGACCCCAGCCTCTGAAGCATATCCCCAGATTCTC...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR TCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTCCCCCACAACCCACCTaGAGAGAATTCTGTGATCTT +
Preference number: 2 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPPPQPT*REFCDL
Trigger: AAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGG...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR TCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAATTTTCCAGTGTTTGTaGGAATCTGGGGATATGCTT +
Preference number: 2 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRIFQCL*ESGDML
Trigger: AAGCATATCCCCAGATTCTCACAAACACTGGAAAAT...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR GCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGAATCTGGGGATATaGTTCAGAGGCTGGGGTCAG +
Preference number: 2 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVENLGI*FRGWGQ
Trigger: CTGACCCCAGCCTCTGAAGCATATCCCCAGATTCTC...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR GCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGATCTGTGATCTTCCTTTaGATTGGTCATGGAAGTCTT +
Preference number: 2 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRSVIFL*IGHGSL
Trigger: AAGACTTCCATGACCAATGCAAAGGAAGATCACAGA...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR CCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTGTGTTTGTGAGAATCTaGGGATATGCTTCAGAGGCT +
Preference number: 2 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLVFVRI*GYASEA
Trigger: AGCCTCTGAAGCATATCCCCAGATTCTCACAAACAC...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR CCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTGATCTTCCTTTGCATTaGTCATGGAAGTCTTTGGCA +
Preference number: 2 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPDLPLH*SWKSLA
Trigger: TGCCAAAGACTTCCATGACCAATGCAAAGGAAGATC...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR GCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGAGAATCTGGGGATATaGTTCAGAGGCTGGGGTCAG +
Preference number: 2 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFENLGI*FRGWGQ
Trigger: CTGACCCCAGCCTCTGAAGCATATCCCCAGATTCTC...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR TCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTATTTTCCAGTGTTTGTaGGAATCTGGGGATATGCTT +
Preference number: 2 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLIFQCL*ESGDML
Trigger: AAGCATATCCCCAGATTCTCACAAACACTGGAAAAT...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR TCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTCCCCCACAACCCACCTaGAGAGAATTCTGTGATCTT +
Preference number: 2 (lower is better)
Translates to: ETISPKVSLQEEKILKCFPPQPT*REFCDL
Trigger: AAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGG...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR GCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCATCTGTGATCTTCCTTTaGATTGGTCATGGAAGTCTT +
Preference number: 2 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSSVIFL*IGHGSL
Trigger: AAGACTTCCATGACCAATGCAAAGGAAGATCACAGA...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR CCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTGTGTTTGTGAGAATCTaGGGATATGCTTCAGAGGCT +
Preference number: 2 (lower is better)
Translates to: ETISPKVSLQEEKILKCFVFVRI*GYASEA
Trigger: AGCCTCTGAAGCATATCCCCAGATTCTCACAAACAC...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR TCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGATTTTCCAGTGTTTGTaGGAATCTGGGGATATGCTT +
Preference number: 2 (lower is better)
Translates to: FALVMEVFGRYGNKTGVEIFQCL*ESGDML
Trigger: AAGCATATCCCCAGATTCTCACAAACACTGGAAAAT...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR CCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTGTGTTTGTGAGAATCTaGGGATATGCTTCAGAGGCT +
Preference number: 2 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIVFVRI*GYASEA
Trigger: AGCCTCTGAAGCATATCCCCAGATTCTCACAAACAC...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR TCA 72 bp ACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTaGTCTTCCTTTGCATTGGTCATGGAAGTCTTTGGC +
Preference number: 3 (lower is better)
Translates to: TTTPTTHLKRIL*SSFALVMEVFG
Trigger: GCCAAAGACTTCCATGACCAATGCAAAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR TCA 72 bp GATTTTCACATGAGTTTCTTTACTCCTGCCCATCGTTaGGGTGAGACAATTTCCCCCAAAGTCTCCTTACAG +
Preference number: 3 (lower is better)
Translates to: DFHMSFFTPAHR*GETISPKVSLQ
Trigger: CTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAACTCATGTGAAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR-3UTR CAA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCATTCTGTGATCTTCCTTaGCATTGGTCATGGAAGTCT +
Preference number: 3 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSFCDLP*HWSWKS
Trigger: AGACTTCCATGACCAATGCAAAGGAAGATCACAGAA...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAGGACAGATGGTGCCCTaGCCTGGGGGACAGTGCTTG +
Preference number: 4 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRGQMVP*PGGQCL
Trigger: CAAGCACTGTCCCCCAGGCCAGGGCACCATCTGTCC...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAGGGCCAGCTCGTGAGTaGCACTGCCCAGGCCCCAAC +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSGPARE*HCPGPN
Trigger: GTTGGGGCCTGGGCAGTGTCACTCACGAGCTGGCCC...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCGGGCCAGCTCGTGAGTaGCACTGCCCAGGCCCCAAC +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFGPARE*HCPGPN
Trigger: GTTGGGGCCTGGGCAGTGTCACTCACGAGCTGGCCC...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTGGACAGATGGTGCCCTaGCCTGGGGGACAGTGCTTG +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPGQMVP*PGGQCL
Trigger: CAAGCACTGTCCCCCAGGCCAGGGCACCATCTGTCC...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTGATGACCAGGACAGATaGTGCCCTGGCCTGGGGGAC +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPDDQDR*CPGLGD
Trigger: GTCCCCCAGGCCAGGGCACCATCTGTCCTGGTCATC...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAGATACCTGGCCCAAGTaGCAGCCCGCTCCTCCTGCC +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSDTWPK*QPAPPA
Trigger: GGCAGGAGGAGCGGGCTGTCACTTGGGCCAGGTATC...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTGGCTGGACTAGGGAGTaGCTTGGGCTCCAGGGATTG +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLGWTRE*LGLQGL
Trigger: CAATCCCTGGAGCCCAAGTCACTCCCTAGTCCAGCC...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCGACCAGGACAGATGGTaGCCTGGCCTGGGGGACAGT +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFDQDRW*PGLGDS
Trigger: ACTGTCCCCCAGGCCAGGGCACCATCTGTCCTGGTC...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGATGGGAGTACTGGGTCTaGTCAAGTGTGGGCTGGACT +
Preference number: 4 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRWEYWV*SSVGWT
Trigger: AGTCCAGCCCACACTTGAGCAGACCCAGTACTCCCA...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTCGGAATGCAGCCTGGTaGTCGTGGGAGTACTGGGTC +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLRNAAW*SWEYWV
Trigger: GACCCAGTACTCCCACGAGCACCAGGCTGCATTCCG...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTAAGCGGAATGCAGCCTaGTGCTCGTGGGAGTACTGG +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPKRNAA*CSWEYW
Trigger: CCAGTACTCCCACGAGCACCAGGCTGCATTCCGCTT...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGACAGGTGTGGCTGTGTTaGGGACATCCTCTGAGTGAG +
Preference number: 4 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRQVWLC*GHPLSE
Trigger: CTCACTCAGAGGATGTCCCCAACACAGCCACACCTG...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAGTCAGATTCTTGGATaGCTCCAGCCCCAGCTCCTT +
Preference number: 4 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRSQILG*LQPQLL
Trigger: AAGGAGCTGGGGCTGGAGTCATCCAAGAATCTGACT...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTGGGCACCGAAGAAGATaGTGGCCCTGGCTTCCCGGA +
Preference number: 4 (lower is better)
Translates to: CVFDFPVFVRIWGYASEAGHRRR*WPWLPG
Trigger: TCCGGGAAGCCAGGGCCATCATCTTCTTCGGTGCCC...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCACAGCCTCCTGCACGCTaGCCTCATAGGCAACACGCT +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSQPPAR*PHRQHA
Trigger: AGCGTGTTGCCTATGAGGTCAGCGTGCAGGAGGCTG...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGGGCCAGCTCGTGAGTaGCACTGCCCAGGCCCCAAC +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFGPARE*HCPGPN
Trigger: GTTGGGGCCTGGGCAGTGTCACTCACGAGCTGGCCC...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCGGCTGGACTAGGGAGTaGCTTGGGCTCCAGGGATTG +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFGWTRE*LGLQGL
Trigger: CAATCCCTGGAGCCCAAGTCACTCCCTAGTCCAGCC...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAGGCTGGACTAGGGAGTaGCTTGGGCTCCAGGGATTG +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSGWTRE*LGLQGL
Trigger: CAATCCCTGGAGCCCAAGTCACTCCCTAGTCCAGCC...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTGACCAGGACAGATGGTaGCCTGGCCTGGGGGACAGT +
Preference number: 4 (lower is better)
Translates to: CVFDFPVFVRIWGYASEADQDRW*PGLGDS
Trigger: ACTGTCCCCCAGGCCAGGGCACCATCTGTCCTGGTC...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTCCTGGTGGTAGCACCTaGTCAGCCATAGAGTGGATC +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPPGGST*SAIEWI
Trigger: GATCCACTCTATGGCTGAGCAGGTGCTACCACCAGG...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAACATAGCAGGGCCGTaGCAGGGGCCCCACAGCAAA +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSNIAGP*QGPHSK
Trigger: TTTGCTGTGGGGCCCCTGCCACGGCCCTGCTATGTT...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTGATGACCAGGACAGATaGTGCCCTGGCCTGGGGGAC +
Preference number: 4 (lower is better)
Translates to: CVFDFPVFVRIWGYASEADDQDR*CPGLGD
Trigger: GTCCCCCAGGCCAGGGCACCATCTGTCCTGGTCATC...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTGGATCTCCAGCCCTGTaGGATGCAGGAAGTAGCCTT +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPGSPAL*DAGSSL
Trigger: AAGGCTACTTCCTGCATCCCACAGGGCTGGAGATCC...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCATGTAAGCGAGTGCCATaGCGCAGTCCCTCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSCKRVP*RSPSGV
Trigger: CACCCCTGAGGGACTGCGCCATGGCACTCGCTTACA...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCTGTAAGCGAGTGCCATaGCGCAGTCCCTCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFCKRVP*RSPSGV
Trigger: CACCCCTGAGGGACTGCGCCATGGCACTCGCTTACA...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTCAGGTGTGGCTGTGTTaGGGACATCCTCTGAGTGAG +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPQVWLC*GHPLSE
Trigger: CTCACTCAGAGGATGTCCCCAACACAGCCACACCTG...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGATCTGTAGAAGTAATATaGCAGCTGCCCAGCCGAAGG +
Preference number: 4 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRSVEVI*QLPSRR
Trigger: CCTTCGGCTGGGCAGCTGTCATATTACTTCTACAGA...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTCCAACTGCGTATTTCTaGGCCAGTTCCTCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLPTAYF*ASSSGL
Trigger: CAGCCCAGAGGAACTGGCTCAGAAATACGCAGTTGG...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTAGGGGTGTAGAAGGTTaGGTGGACATATCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPRGVEG*VDISSG
Trigger: GCCACTGGATATGTCCACGCAACCTTCTACACCCCT...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTCCTGGTGGTAGCACCTaGTCAGCCATAGAGTGGATC +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLPGGST*SAIEWI
Trigger: GATCCACTCTATGGCTGAGCAGGTGCTACCACCAGG...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAACAGCCCGCTCCTCCTaGCAACCTGGTGGTAGCACC +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVTARSS*QPGGST
Trigger: GGTGCTACCACCAGGTTGGCAGGAGGAGCGGGCTGT...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGACAGCCCGCTCCTCCTaGCAACCTGGTGGTAGCACC +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVETARSS*QPGGST
Trigger: GGTGCTACCACCAGGTTGGCAGGAGGAGCGGGCTGT...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCGATGGTGCCCTGGCCTaGGGGACAGTGCTTGAACAT +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFDGALA*GTVLEH
Trigger: ATGTTCAAGCACTGTCCCCCAGGCCAGGGCACCATC...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTGGTCATACTCCGCTGTaGAGATGGGTCTTGATGACC +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPGHTPL*RWVLMT
Trigger: GGTCATCAAGACCCATCTCCACAGCGGAGTATGACC...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAGTGTCAAGGAAAAACTaGTGCAGAGGCGTGATGGCT +
Preference number: 4 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRVSRKN*CRGVMA
Trigger: AGCCATCACGCCTCTGCACCAGTTTTTCCTTGACAC...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTCTGAGCCAGTTCCTCTaGGCTGTTGTAGAACTTGCC +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPLSQFL*AVVELA
Trigger: GGCAAGTTCTACAACAGCCCAGAGGAACTGGCTCAG...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTGGAAGAGAAGAGTGGTaGCTGCTCTGTGGCACCCGG +
Preference number: 4 (lower is better)
Translates to: CVFDFPVFVRIWGYASEAGREEW*LLCGTR
Trigger: CCGGGTGCCACAGAGCAGCCACCACTCTTCTCTTCC...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTTATATCTGGGGCCACTaGGCTGGACAACGTGGGGGC +
Preference number: 4 (lower is better)
Translates to: CVFDFPVFVRIWGYASEAYIWGH*AGQRGG
Trigger: GCCCCCACGTTGTCCAGCCCAGTGGCCCCAGATATA...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAAGCGGAATGCAGCCTaGTGCTCGTGGGAGTACTGG +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSKRNAA*CSWEYW
Trigger: CCAGTACTCCCACGAGCACCAGGCTGCATTCCGCTT...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCAAGCGGAATGCAGCCTaGTGCTCGTGGGAGTACTGG +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFKRNAA*CSWEYW
Trigger: CCAGTACTCCCACGAGCACCAGGCTGCATTCCGCTT...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGACACAATTTCCAGGTGTaGCTGTGTTGGGGACATCCT +
Preference number: 4 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRHNFQV*LCWGHP
Trigger: AGGATGTCCCCAACACAGCCACACCTGGAAATTGTG...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTCTGTAGAAGTAATATaGCAGCTGCCCAGCCGAAGG +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPSVEVI*QLPSRR
Trigger: CCTTCGGCTGGGCAGCTGTCATATTACTTCTACAGA...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTGGGCACCGAAGAAGATaGTGGCCCTGGCTTCCCGGA +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFGHRRR*WPWLPG
Trigger: TCCGGGAAGCCAGGGCCATCATCTTCTTCGGTGCCC...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCATCAGTGACATTGGGGTaGTCCTGGGCACCGAAGAAG +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSSVTLG*SWAPKK
Trigger: CTTCTTCGGTGCCCAGGATCACCCCAATGTCACTGA...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGATACCTGGCCCAAGTaGCAGCCCGCTCCTCCTGCC +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCDTWPK*QPAPPA
Trigger: GGCAGGAGGAGCGGGCTGTCACTTGGGCCAGGTATC...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTGATACCTGGCCCAAGTaGCAGCCCGCTCCTCCTGCC +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIDTWPK*QPAPPA
Trigger: GGCAGGAGGAGCGGGCTGTCACTTGGGCCAGGTATC...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCATCAGGGATCCAGCGCTaGACATGGTTGAGACCGTTG +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSSGIQR*TWLRPL
Trigger: CAACGGTCTCAACCATGTTCAGCGCTGGATCCCTGA...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCTCAGGGATCCAGCGCTaGACATGGTTGAGACCGTTG +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFSGIQR*TWLRPL
Trigger: CAACGGTCTCAACCATGTTCAGCGCTGGATCCCTGA...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTAGGGGTGTAGAAGGTTaGGTGGACATATCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLRGVEG*VDISSG
Trigger: GCCACTGGATATGTCCACGCAACCTTCTACACCCCT...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTACAGCCCGCTCCTCCTaGCAACCTGGTGGTAGCACC +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFTARSS*QPGGST
Trigger: GGTGCTACCACCAGGTTGGCAGGAGGAGCGGGCTGT...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTCCAAAGTCAGATTCTTaGATGACTCCAGCCCCAGCT +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPPKSDS*MTPAPA
Trigger: AGCTGGGGCTGGAGTCATCCAAGAATCTGACTTTGG...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGAACATAGCAGGGCCGTaGCAGGGGCCCCACAGCAAA +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVENIAGP*QGPHSK
Trigger: TTTGCTGTGGGGCCCCTGCCACGGCCCTGCTATGTT...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTGGACAGATGGTGCCCTaGCCTGGGGGACAGTGCTTG +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFGQMVP*PGGQCL
Trigger: CAAGCACTGTCCCCCAGGCCAGGGCACCATCTGTCC...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTACTCCGCTGTGGAGATaGGTCTTGATGACCAGGACA +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLTPLWR*VLMTRT
Trigger: TGTCCTGGTCATCAAGACCCATCTCCACAGCGGAGT...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGGAAGAGAAGAGTGGTaGCTGCTCTGTGGCACCCGG +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVGREEW*LLCGTR
Trigger: CCGGGTGCCACAGAGCAGCCACCACTCTTCTCTTCC...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGGGAAGAGAAGAGTGGTaGCTGCTCTGTGGCACCCGG +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVEGREEW*LLCGTR
Trigger: CCGGGTGCCACAGAGCAGCCACCACTCTTCTCTTCC...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTATATATCTGGGGCCACTaGGCTGGACAACGTGGGGGC +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVYIWGH*AGQRGG
Trigger: GCCCCCACGTTGTCCAGCCCAGTGGCCCCAGATATA...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGTGTAAGCGAGTGCCATaGCGCAGTCCCTCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVECKRVP*RSPSGV
Trigger: CACCCCTGAGGGACTGCGCCATGGCACTCGCTTACA...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCACAGGTGTGGCTGTGTTaGGGACATCCTCTGAGTGAG +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSQVWLC*GHPLSE
Trigger: CTCACTCAGAGGATGTCCCCAACACAGCCACACCTG...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAGTCAGATTCTTGGATaGCTCCAGCCCCAGCTCCTT +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSSQILG*LQPQLL
Trigger: AAGGAGCTGGGGCTGGAGTCATCCAAGAATCTGACT...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGGGCACCGAAGAAGATaGTGGCCCTGGCTTCCCGGA +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCGHRRR*WPWLPG
Trigger: TCCGGGAAGCCAGGGCCATCATCTTCTTCGGTGCCC...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTCAGCCTCCTGCACGCTaGCCTCATAGGCAACACGCT +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFQPPAR*PHRQHA
Trigger: AGCGTGTTGCCTATGAGGTCAGCGTGCAGGAGGCTG...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTGACCAGGACAGATGGTaGCCTGGCCTGGGGGACAGT +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIDQDRW*PGLGDS
Trigger: ACTGTCCCCCAGGCCAGGGCACCATCTGTCCTGGTC...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTCGGAATGCAGCCTGGTaGTCGTGGGAGTACTGGGTC +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFRNAAW*SWEYWV
Trigger: GACCCAGTACTCCCACGAGCACCAGGCTGCATTCCG...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTCGGAATGCAGCCTGGTaGTCGTGGGAGTACTGGGTC +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFRNAAW*SWEYWV
Trigger: GACCCAGTACTCCCACGAGCACCAGGCTGCATTCCG...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTACTGTCCAAAGCGGAATaGAGCCTGGTGCTCGTGGGA +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVLSKAE*SLVLVG
Trigger: TCCCACGAGCACCAGGCTGCATTCCGCTTTGGACAG...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAGAAACACGGAGTTCTTaGCCAAAGTCAGATTCTTGG +
Preference number: 4 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRETRSS*PKSDSW
Trigger: CCAAGAATCTGACTTTGGCCAAGAACTCCGTGTTTC...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGATGACCAGGACAGATaGTGCCCTGGCCTGGGGGAC +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCDDQDR*CPGLGD
Trigger: GTCCCCCAGGCCAGGGCACCATCTGTCCTGGTCATC...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAACTCCGCTGTGGAGATaGGTCTTGATGACCAGGACA +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSTPLWR*VLMTRT
Trigger: TGTCCTGGTCATCAAGACCCATCTCCACAGCGGAGT...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTGAGCCAGTTCCTCTaGGCTGTTGTAGAACTTGCC +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFLSQFL*AVVELA
Trigger: GGCAAGTTCTACAACAGCCCAGAGGAACTGGCTCAG...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGGGGTCTGCTCAAGTGTaGGCTGGACTAGGGAGTGAC +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVEGSAQV*AGLGSD
Trigger: GTCACTCCCTAGTCCAGCCCACACTTGAGCAGACCC...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTACCAACTGCGTATTTCTaGGCCAGTTCCTCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVPTAYF*ASSSGL
Trigger: CAGCCCAGAGGAACTGGCTCAGAAATACGCAGTTGG...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTCAGCCTCCTGCACGCTaGCCTCATAGGCAACACGCT +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCQPPAR*PHRQHA
Trigger: AGCGTGTTGCCTATGAGGTCAGCGTGCAGGAGGCTG...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTGCCACCTTTAAAGTTTaGGTCAAAGTGGCGCCTAAG +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLATFKV*VKVAPK
Trigger: CTTAGGCGCCACTTTGACTCAAACTTTAAAGGTGGC...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAGTCTGCAAATATCCTTaGTTTGTCATGAGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRVCKYP*FVMRSR
Trigger: ACGACTCCTCATGACAAAGCAAGGATATTTGCAGAC...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCATCAAGGAAAAACTGGTaGAGAGGCGTGATGGCTCTG +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSSRKNW*RGVMAL
Trigger: CAGAGCCATCACGCCTCTGCACCAGTTTTTCCTTGA...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTCTCCACTTCTCCAACTaGGTATTTCTGAGCCAGTTC +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLLHFSN*VFLSQF
Trigger: GAACTGGCTCAGAAATACGCAGTTGGAGAAGTGGAG...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGTGGGAGTACTGGGTCTaGTCAAGTGTGGGCTGGACT +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVEWEYWV*SSVGWT
Trigger: AGTCCAGCCCACACTTGAGCAGACCCAGTACTCCCA...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTCTGTCCAAAGCGGAATaGAGCCTGGTGCTCGTGGGA +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFLSKAE*SLVLVG
Trigger: TCCCACGAGCACCAGGCTGCATTCCGCTTTGGACAG...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTTCTGGTTGTAGAGGCTaGTGCTGTAGCGTTCAGATT +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLSGCRG*CCSVQI
Trigger: AATCTGAACGCTACAGCAGCAGCCTCTACAACCAGA...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATGGTGCCCTGGCCTaGGGGACAGTGCTTGAACAT +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFDGALA*GTVLEH
Trigger: ATGTTCAAGCACTGTCCCCCAGGCCAGGGCACCATC...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGTAGGAAGAGAAGAGTaGTGGCTGCTCTGTGGCACC +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVVGREE*WLLCGT
Trigger: GGTGCCACAGAGCAGCCACCACTCTTCTCTTCCTAC...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTTATATCTGGGGCCACTaGGCTGGACAACGTGGGGGC +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIYIWGH*AGQRGG
Trigger: GCCCCCACGTTGTCCAGCCCAGTGGCCCCAGATATA...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCATGTTGCCAAGCAGGTaGGTTTGTAAGCGAGTGCCA +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFMLPSR*VCKRVP
Trigger: TGGCACTCGCTTACAAACCCACCTGCTTGGCAACAT...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTTCCGGAAGCTGTTCTTaGTGCCTGCCACGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFSGSCS*CLPRPG
Trigger: ACCTGGACGTGGCAGGCACCAAGAACAGCTTCCGGA...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTGGGTCTGCTCAAGTGTaGGCTGGACTAGGGAGTGAC +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFGSAQV*AGLGSD
Trigger: GTCACTCCCTAGTCCAGCCCACACTTGAGCAGACCC...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTTCAGTGACATTGGGGTaGTCCTGGGCACCGAAGAAG +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFSVTLG*SWAPKK
Trigger: CTTCTTCGGTGCCCAGGATCACCCCAATGTCACTGA...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTCCAACTGCGTATTTCTaGGCCAGTTCCTCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFPTAYF*ASSSGL
Trigger: CAGCCCAGAGGAACTGGCTCAGAAATACGCAGTTGG...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAGCCACCTTTAAAGTTTaGGTCAAAGTGGCGCCTAAG +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSATFKV*VKVAPK
Trigger: CTTAGGCGCCACTTTGACTCAAACTTTAAAGGTGGC...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCACTCCACTTCTCCAACTaGGTATTTCTGAGCCAGTTC +
Preference number: 4 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSLHFSN*VFLSQF
Trigger: GAACTGGCTCAGAAATACGCAGTTGGAGAAGTGGAG...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTCTTAGTCTGCATGCCTaGAGGTGTGTGTCCTCCATA +
Preference number: 4 (lower is better)
Translates to: CVFDFPVFVRIWGYASEALSLHA*RCVSSI
Trigger: TATGGAGGACACACACCTGCAGGCATGCAGACTAAG...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAAGGGGTGTAGAAGGTTaGGTGGACATATCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVRGVEG*VDISSG
Trigger: GCCACTGGATATGTCCACGCAACCTTCTACACCCCT...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGGTGGGTGTGGATGTTaGCAAGCAGGTGGGTTTGTA +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVGGCGC*QAGGFV
Trigger: TACAAACCCACCTGCTTGGCAACATCCACACCCACC...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTCTGTCCAAAGCGGAATaGAGCCTGGTGCTCGTGGGA +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCLSKAE*SLVLVG
Trigger: TCCCACGAGCACCAGGCTGCATTCCGCTTTGGACAG...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTCCTGGTGGTAGCACCTaGTCAGCCATAGAGTGGATC +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFPGGST*SAIEWI
Trigger: GATCCACTCTATGGCTGAGCAGGTGCTACCACCAGG...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGATGGTGCCCTGGCCTaGGGGACAGTGCTTGAACAT +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCDGALA*GTVLEH
Trigger: ATGTTCAAGCACTGTCCCCCAGGCCAGGGCACCATC...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAACTCCGCTGTGGAGATaGGTCTTGATGACCAGGACA +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVTPLWR*VLMTRT
Trigger: TGTCCTGGTCATCAAGACCCATCTCCACAGCGGAGT...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTGGATCTCCAGCCCTGTaGGATGCAGGAAGTAGCCTT +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFGSPAL*DAGSSL
Trigger: AAGGCTACTTCCTGCATCCCACAGGGCTGGAGATCC...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGCTGAGCCAGTTCCTCTaGGCTGTTGTAGAACTTGCC +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVELSQFL*AVVELA
Trigger: GGCAAGTTCTACAACAGCCCAGAGGAACTGGCTCAG...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTCGTGGACATATCCAGTaGCATGCATCTTGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: CVFDFPVFVRIWGYASEARGHIQ*HASWSP
Trigger: TGGAGACCAAGATGCATGCCACTGGATATGTCCACG...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTTCCGGAAGCTGTTCTTaGTGCCTGCCACGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLISGSCS*CLPRPG
Trigger: ACCTGGACGTGGCAGGCACCAAGAACAGCTTCCGGA...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTTCCGGAAGCTGTTCTTaGTGCCTGCCACGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCSGSCS*CLPRPG
Trigger: ACCTGGACGTGGCAGGCACCAAGAACAGCTTCCGGA...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTGGGTCTGCTCAAGTGTaGGCTGGACTAGGGAGTGAC +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIGSAQV*AGLGSD
Trigger: GTCACTCCCTAGTCCAGCCCACACTTGAGCAGACCC...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGTCTGTAGAAGTAATATaGCAGCTGCCCAGCCGAAGG +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVESVEVI*QLPSRR
Trigger: CCTTCGGCTGGGCAGCTGTCATATTACTTCTACAGA...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTGCAGTAGCATCTCAATaGGAAACACGGAGTTCTTGG +
Preference number: 4 (lower is better)
Translates to: CVFDFPVFVRIWGYASEAAVASQ*ETRSSW
Trigger: CCAAGAACTCCGTGTTTCTCATTGAGATGCTACTGC...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTACTGGGGGCTCAGGTCTaGAAATATCCTTGCTTTGTC +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVLGAQV*KYPCFV
Trigger: GACAAAGCAAGGATATTTGCAGACCTGAGCCCCCAG...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGCCCCAGCTCCTTTCTaGTCATCAGGAAGCTGTGCA +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCAPAPF*SSGSCA
Trigger: TGCACAGCTTCCTGATGAGCAGAAAGGAGCTGGGGC...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTGCCCCAGCTCCTTTCTaGTCATCAGGAAGCTGTGCA +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIAPAPF*SSGSCA
Trigger: TGCACAGCTTCCTGATGAGCAGAAAGGAGCTGGGGC...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCAGTCCTGGACATCTGTaGTGCTATGATCTACAAGGA +
Preference number: 4 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFSPGHL*CYDLQG
Trigger: TCCTTGTAGATCATAGCAGCACAGATGTCCAGGACT...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTAGTACATTAAAGATCTaGAGCCCAGAAGAGGATCTT +
Preference number: 4 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPSTLKI*SPEEDL
Trigger: AAGATCCTCTTCTGGGCTGCAGATCTTTAATGTACT...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTTGGGAGTACTGGGTCTaGTCAAGTGTGGGCTGGACT +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIWEYWV*SSVGWT
Trigger: AGTCCAGCCCACACTTGAGCAGACCCAGTACTCCCA...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGGTCATACTCCGCTGTaGAGATGGGTCTTGATGACC +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFGHTPL*RWVLMT
Trigger: GGTCATCAAGACCCATCTCCACAGCGGAGTATGACC...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTGGTCATACTCCGCTGTaGAGATGGGTCTTGATGACC +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFGHTPL*RWVLMT
Trigger: GGTCATCAAGACCCATCTCCACAGCGGAGTATGACC...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGGTGTCAAGGAAAAACTaGTGCAGAGGCGTGATGGCT +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVEVSRKN*CRGVMA
Trigger: AGCCATCACGCCTCTGCACCAGTTTTTCCTTGACAC...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTGTAGGAAGAGAAGAGTaGTGGCTGCTCTGTGGCACC +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIVGREE*WLLCGT
Trigger: GGTGCCACAGAGCAGCCACCACTCTTCTCTTCCTAC...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTAGGAAGAGAAGAGTaGTGGCTGCTCTGTGGCACC +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCVGREE*WLLCGT
Trigger: GGTGCCACAGAGCAGCCACCACTCTTCTCTTCCTAC...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTACGTGGACATATCCAGTaGCATGCATCTTGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVRGHIQ*HASWSP
Trigger: TGGAGACCAAGATGCATGCCACTGGATATGTCCACG...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAATGTTGCCAAGCAGGTaGGTTTGTAAGCGAGTGCCA +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVMLPSR*VCKRVP
Trigger: TGGCACTCGCTTACAAACCCACCTGCTTGGCAACAT...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTACACAATTTCCAGGTGTaGCTGTGTTGGGGACATCCT +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVHNFQV*LCWGHP
Trigger: AGGATGTCCCCAACACAGCCACACCTGGAAATTGTG...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGCTCGAAGAAGTTGAATaGCCGGATCAAGAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVELEEVE*PDQEAH
Trigger: GTGGGCTTCTTGATCCGGCCATTCAACTTCTTCGAG...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTTCAAGGAAAAACTGGTaGAGAGGCGTGATGGCTCTG +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFSRKNW*RGVMAL
Trigger: CAGAGCCATCACGCCTCTGCACCAGTTTTTCCTTGA...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTAGTACATTAAAGATCTaGAGCCCAGAAGAGGATCTT +
Preference number: 4 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLSTLKI*SPEEDL
Trigger: AAGATCCTCTTCTGGGCTGCAGATCTTTAATGTACT...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTCTTAGTCTGCATGCCTaGAGGTGTGTGTCCTCCATA +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFLSLHA*RCVSSI
Trigger: TATGGAGGACACACACCTGCAGGCATGCAGACTAAG...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTATCTAGATGCCAGGGATaGATCCTCCTCGAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVSRCQG*ILLEEV
Trigger: AACTTCTTCGAGGAGGATCCATCCCTGGCATCTAGA...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTGCAGTAGCATCTCAATaGGAAACACGGAGTTCTTGG +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFAVASQ*ETRSSW
Trigger: CCAAGAACTCCGTGTTTCTCATTGAGATGCTACTGC...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGCAGTAGCATCTCAATaGGAAACACGGAGTTCTTGG +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFAVASQ*ETRSSW
Trigger: CCAAGAACTCCGTGTTTCTCATTGAGATGCTACTGC...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR TCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGCCACCTTTAAAGTTTaGGTCAAAGTGGCGCCTAAG +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFATFKV*VKVAPK
Trigger: CTTAGGCGCCACTTTGACTCAAACTTTAAAGGTGGC...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTCTGGGGGCTCAGGTCTaGAAATATCCTTGCTTTGTC +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCLGAQV*KYPCFV
Trigger: GACAAAGCAAGGATATTTGCAGACCTGAGCCCCCAG...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTTCAAGGAAAAACTGGTaGAGAGGCGTGATGGCTCTG +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLISRKNW*RGVMAL
Trigger: CAGAGCCATCACGCCTCTGCACCAGTTTTTCCTTGA...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGACATATCCAGTGGCATaGATCTTGGTCTCCATCACA +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVETYPVA*ILVSIT
Trigger: TGTGATGGAGACCAAGATGCATGCCACTGGATATGT...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTCCAAAGTCAGATTCTTaGATGACTCCAGCCCCAGCT +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIPKSDS*MTPAPA
Trigger: AGCTGGGGCTGGAGTCATCCAAGAATCTGACTTTGG...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTCCAAAGTCAGATTCTTaGATGACTCCAGCCCCAGCT +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCPKSDS*MTPAPA
Trigger: AGCTGGGGCTGGAGTCATCCAAGAATCTGACTTTGG...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTCAAGGAAAAACTaGTGCAGAGGCGTGATGGCT +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCVSRKN*CRGVMA
Trigger: AGCCATCACGCCTCTGCACCAGTTTTTCCTTGACAC...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTATGTTGCCAAGCAGGTaGGTTTGTAAGCGAGTGCCA +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCMLPSR*VCKRVP
Trigger: TGGCACTCGCTTACAAACCCACCTGCTTGGCAACAT...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTCACAATTTCCAGGTGTaGCTGTGTTGGGGACATCCT +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIHNFQV*LCWGHP
Trigger: AGGATGTCCCCAACACAGCCACACCTGGAAATTGTG...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTCTCGAAGAAGTTGAATaGCCGGATCAAGAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCLEEVE*PDQEAH
Trigger: GTGGGCTTCTTGATCCGGCCATTCAACTTCTTCGAG...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTTCTAGATGCCAGGGATaGATCCTCCTCGAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFSRCQG*ILLEEV
Trigger: AACTTCTTCGAGGAGGATCCATCCCTGGCATCTAGA...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGGTCTGCAAATATCCTTaGTTTGTCATGAGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: FALVMEVFGRYGNKTGVEVCKYP*FVMRSR
Trigger: ACGACTCCTCATGACAAAGCAAGGATATTTGCAGAC...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTAGTCCTGGACATCTGTaGTGCTATGATCTACAAGGA +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFSPGHL*CYDLQG
Trigger: TCCTTGTAGATCATAGCAGCACAGATGTCCAGGACT...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTAGTCCTGGACATCTGTaGTGCTATGATCTACAAGGA +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFSPGHL*CYDLQG
Trigger: TCCTTGTAGATCATAGCAGCACAGATGTCCAGGACT...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTCTCCACTTCTCCAACTaGGTATTTCTGAGCCAGTTC +
Preference number: 4 (lower is better)
Translates to: ACRVETEVLFVCLFVCLILHFSN*VFLSQF
Trigger: GAACTGGCTCAGAAATACGCAGTTGGAGAAGTGGAG...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTACATATCCAGTGGCATaGATCTTGGTCTCCATCACA +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFTYPVA*ILVSIT
Trigger: TGTGATGGAGACCAAGATGCATGCCACTGGATATGT...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTTCTGGTTGTAGAGGCTaGTGCTGTAGCGTTCAGATT +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCSGCRG*CCSVQI
Trigger: AATCTGAACGCTACAGCAGCAGCCTCTACAACCAGA...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTGTCTGCAAATATCCTTaGTTTGTCATGAGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: ETISPKVSLQEEKILKCFVCKYP*FVMRSR
Trigger: ACGACTCCTCATGACAAAGCAAGGATATTTGCAGAC...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR GCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTACATATCCAGTGGCATaGATCTTGGTCTCCATCACA +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCTYPVA*ILVSIT
Trigger: TGTGATGGAGACCAAGATGCATGCCACTGGATATGT...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CCA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGAAACACGGAGTTCTTaGCCAAAGTCAGATTCTTGG +
Preference number: 4 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCETRSS*PKSDSW
Trigger: CCAAGAATCTGACTTTGGCCAAGAACTCCGTGTTTC...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
3UTR CAA 72 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTaGTTTGTTTGTGTGTTTGATTTTCCAGTGTTTGTG +
Preference number: 4 (lower is better)
Translates to: SSLQGRNRSFVC*FVCVFDFPVFV
Trigger: CACAAACACTGGAAAATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 90 bp GTCACAGCCAAGGGATACCTGGCCCAAGTGACAGCCCGCTCCTCCTaGCAACCTGGTGGTAGCACCTGCTCAGCCATAGAGTGGATCTGC +
Preference number: 5 (lower is better)
Translates to: VTAKGYLAQVTARSS*QPGGSTCSAIEWIC
Trigger: GCAGATCCACTCTATGGCTGAGCAGGTGCTACCACCAGGTTGGCAGGAGGAGCGGGCTGTCACTTGGGCCAGGTATCCCTTGGCTGTGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS TCA 90 bp CAGATTCCCGATACTTTGTCACAGCCAAGGGATACCTGGCCCAAGTaGCAGCCCGCTCCTCCTGCCAACCTGGTGGTAGCACCTGCTCAG +
Preference number: 5 (lower is better)
Translates to: QIPDTLSQPRDTWPK*QPAPPANLVVAPAQ
Trigger: CTGAGCAGGTGCTACCACCAGGTTGGCAGGAGGAGCGGGCTGTCACTTGGGCCAGGTATCCCTTGGCTGTGACAAAGTATCGGGAATCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 90 bp GGCACCCGGCAGTGGGTCCTCGAGAACCACTTCCTCCAGAACCACTaGCTCCACTTCTCCAACTGCGTATTTCTGAGCCAGTTCCTCTGG +
Preference number: 5 (lower is better)
Translates to: GTRQWVLENHFLQNH*LHFSNCVFLSQFLW
Trigger: CCAGAGGAACTGGCTCAGAAATACGCAGTTGGAGAAGTGGAGGCAGTGGTTCTGGAGGAAGTGGTTCTCGAGGACCCACTGCCGGGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 90 bp CCAGGTGGGTGTGGATGTTGCCAAGCAGGTGGGTTTGTAAGCGAGTaGCATGGCGCAGTCCCTCAGGGGTGTAGAAGGTTGCGTGGACAT +
Preference number: 5 (lower is better)
Translates to: PGGCGCCQAGGFVSE*HGAVPQGCRRLRGH
Trigger: ATGTCCACGCAACCTTCTACACCCCTGAGGGACTGCGCCATGGCACTCGCTTACAAACCCACCTGCTTGGCAACATCCACACCCACCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 90 bp AGCAGGTACTTGGGCAGAGTCTGTCCAAAGCGGAATGCAGCCTGGTaGTCGTGGGAGTACTGGGTCTGCTCAAGTGTGGGCTGGACTAGG +
Preference number: 5 (lower is better)
Translates to: SRYLGRVCPKRNAAW*SWEYWVCSSVGWTR
Trigger: CCTAGTCCAGCCCACACTTGAGCAGACCCAGTACTCCCACGAGCACCAGGCTGCATTCCGCTTTGGACAGACTCTGCCCAAGTACCTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 90 bp GCTGCTAAAGAGCAGGTACTTGGGCAGAGTCTGTCCAAAGCGGAATaGAGCCTGGTGCTCGTGGGAGTACTGGGTCTGCTCAAGTGTGGG +
Preference number: 5 (lower is better)
Translates to: AAKEQVLGQSLSKAE*SLVLVGVLGLLKCG
Trigger: CCCACACTTGAGCAGACCCAGTACTCCCACGAGCACCAGGCTGCATTCCGCTTTGGACAGACTCTGCCCAAGTACCTGCTCTTTAGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 90 bp CTCTGTTCAGCATGTGGTAGAGGAGGTCATACTCCGCTGTGGAGATaGGTCTTGATGACCAGGACAGATGGTGCCCTGGCCTGGGGGACA +
Preference number: 5 (lower is better)
Translates to: LCSACGRGGHTPLWR*VLMTRTDGALAWGT
Trigger: TGTCCCCCAGGCCAGGGCACCATCTGTCCTGGTCATCAAGACCCATCTCCACAGCGGAGTATGACCTCCTCTACCACATGCTGAACAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS CCA 90 bp AAGAGCAGGTACTTGGGCAGAGTCTGTCCAAAGCGGAATGCAGCCTaGTGCTCGTGGGAGTACTGGGTCTGCTCAAGTGTGGGCTGGACT +
Preference number: 5 (lower is better)
Translates to: KSRYLGRVCPKRNAA*CSWEYWVCSSVGWT
Trigger: AGTCCAGCCCACACTTGAGCAGACCCAGTACTCCCACGAGCACCAGGCTGCATTCCGCTTTGGACAGACTCTGCCCAAGTACCTGCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS TCA 90 bp GAGTCGTCACAGCAGATGCTGTGTCTGCCGTCTGTAGAAGTAATATaGCAGCTGCCCAGCCGAAGGCCAGACTCATCTGTGCCAGCCTCA +
Preference number: 5 (lower is better)
Translates to: ESSQQMLCLPSVEVI*QLPSRRPDSSVPAS
Trigger: TGAGGCTGGCACAGATGAGTCTGGCCTTCGGCTGGGCAGCTGTCATATTACTTCTACAGACGGCAGACACAGCATCTGCTGTGACGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS TCA 90 bp AAAGGAGGAGACACCAAGCAGTCCCTGTTCTCAGGGATCCAGCGCTaGACATGGTTGAGACCGTTGTCCTGGGGCCACACTATCACAGTG +
Preference number: 5 (lower is better)
Translates to: KGGDTKQSLFSGIQR*TWLRPLSWGHTITV
Trigger: CACTGTGATAGTGTGGCCCCAGGACAACGGTCTCAACCATGTTCAGCGCTGGATCCCTGAGAACAGGGACTGCTTGGTGTCTCCTCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 90 bp ATCTTAGCCGGTAAGAGAAGCTCCAGTCTCCGTAGAGCACAACGTTaGCCTCTAGCTTATATCTGGGGCCACTGGGCTGGACAACGTGGG +
Preference number: 5 (lower is better)
Translates to: ILAGKRSSSLRRAQR*PLAYIWGHWAGQRG
Trigger: CCCACGTTGTCCAGCCCAGTGGCCCCAGATATAAGCTAGAGGGCAACGTTGTGCTCTACGGAGACTGGAGCTTCTCTTACCGGCTAAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS TCA 90 bp TCGTGGGAGTACTGGGTCTGCTCAAGTGTGGGCTGGACTAGGGAGTaGCTTGGGCTCCAGGGATTGGTGATGTTTTCCAGCTTTGTCTTC +
Preference number: 5 (lower is better)
Translates to: SWEYWVCSSVGWTRE*LGLQGLVMFSSFVF
Trigger: GAAGACAAAGCTGGAAAACATCACCAATCCCTGGAGCCCAAGTCACTCCCTAGTCCAGCCCACACTTGAGCAGACCCAGTACTCCCACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 90 bp CCTAAGGGGTACCCCTGTGGGCATCTCAAAGAGGCACAGAGCGCGTaGATAAAGGACAGGGCCATCGCTGTCATAATAGTGGAAAGCATC +
Preference number: 5 (lower is better)
Translates to: PKGYPCGHLKEAQSA*IKDRAIAVIIVESI
Trigger: GATGCTTTCCACTATTATGACAGCGATGGCCCTGTCCTTTATCCACGCGCTCTGTGCCTCTTTGAGATGCCCACAGGGGTACCCCTTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS TCA 90 bp CAAGTGTGGGCTGGACTAGGGAGTGACTTGGGCTCCAGGGATTGGTaGTGTTTTCCAGCTTTGTCTTCAGTGTCCGGAAGCTGTTCTTGG +
Preference number: 5 (lower is better)
Translates to: QVWAGLGSDLGSRDW*CFPALSSVSGSCSW
Trigger: CCAAGAACAGCTTCCGGACACTGAAGACAAAGCTGGAAAACATCACCAATCCCTGGAGCCCAAGTCACTCCCTAGTCCAGCCCACACTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 90 bp TTGGATGACTCCAGCCCCAGCTCCTTTCTGCTCATCAGGAAGCTGTaGACAGCCTTTATCTCCTGGGGGCTCAGGTCTGCAAATATCCTT +
Preference number: 5 (lower is better)
Translates to: LDDSSPSSFLLIRKL*TAFISWGLRSANIL
Trigger: AAGGATATTTGCAGACCTGAGCCCCCAGGAGATAAAGGCTGTGCACAGCTTCCTGATGAGCAGAAAGGAGCTGGGGCTGGAGTCATCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS GCA 90 bp TGCCGTTATACCAGAGCTGTTCCACTCTCCAGTCCTGGACATCTGTaGTGCTATGATCTACAAGGATCTCCAGCCCTGTGGGATGCAGGA +
Preference number: 5 (lower is better)
Translates to: CRYTRAVPLSSPGHL*CYDLQGSPALWDAG
Trigger: TCCTGCATCCCACAGGGCTGGAGATCCTTGTAGATCATAGCAGCACAGATGTCCAGGACTGGAGAGTGGAACAGCTCTGGTATAACGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 90 bp AAACCACAGGGGGATCCCAGGGGTCATTCTGGTTGTAGAGGCTGCTaGTGTAGCGTTCAGATTCCCGATACTTTGTCACAGCCAAGGGAT +
Preference number: 5 (lower is better)
Translates to: KPQGDPRGHSGCRGC*CSVQIPDTLSQPRD
Trigger: ATCCCTTGGCTGTGACAAAGTATCGGGAATCTGAACGCTACAGCAGCAGCCTCTACAACCAGAATGACCCCTGGGATCCCCCTGTGGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 90 bp CGTTATACCAGAGCTGTTCCACTCTCCAGTCCTGGACATCTGTGCTaGTATGATCTACAAGGATCTCCAGCCCTGTGGGATGCAGGAAGT +
Preference number: 5 (lower is better)
Translates to: RYTRAVPLSSPGHLC*YDLQGSPALWDAGS
Trigger: ACTTCCTGCATCCCACAGGGCTGGAGATCCTTGTAGATCATAGCAGCACAGATGTCCAGGACTGGAGAGTGGAACAGCTCTGGTATAACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp CTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGACAGGGGTGTAGAAGGTaGCGTGGACATATCCAGTGG +
Preference number: 5 (lower is better)
Translates to: LPIVEVRQFPPKSPYRKRQGCRR*RGHIQW
Trigger: CCACTGGATATGTCCACGCAACCTTCTACACCCCTG...TCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 90 bp CACTGCCTCCACTTCTCCAACTGCGTATTTCTGAGCCAGTTCCTCTaGGCTGTTGTAGAACTTGCCGTTATACCAGAGCTGTTCCACTCT +
Preference number: 5 (lower is better)
Translates to: HCLHFSNCVFLSQFL*AVVELAVIPELFHS
Trigger: AGAGTGGAACAGCTCTGGTATAACGGCAAGTTCTACAACAGCCCAGAGGAACTGGCTCAGAAATACGCAGTTGGAGAAGTGGAGGCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGCCTGGGGGACAGTGCTaGAACATAGCAGGGCCGTGG +
Preference number: 5 (lower is better)
Translates to: FALVMEVFGRYGNKTGVEPGGQC*NIAGPW
Trigger: CCACGGCCCTGCTATGTTCAAGCACTGTCCCCCAGG...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTCAGGGGTGTAGAAGGTaGCGTGGACATATCCAGTGG +
Preference number: 5 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLQGCRR*RGHIQW
Trigger: CCACTGGATATGTCCACGCAACCTTCTACACCCCTG...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGGTCCGGAAGCTGTTCTaGGTGCCTGCCACGTCCAGG +
Preference number: 5 (lower is better)
Translates to: FALVMEVFGRYGNKTGVEVRKLF*VPATSR
Trigger: CCTGGACGTGGCAGGCACCAAGAACAGCTTCCGGAC...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGTCCGGAAGCTGTTCTaGGTGCCTGCCACGTCCAGG +
Preference number: 5 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVVRKLF*VPATSR
Trigger: CCTGGACGTGGCAGGCACCAAGAACAGCTTCCGGAC...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp GTTTCTTTACTCCTGCCCATCGTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTCTAAAGAGCAGGTACTaGGGCAGAGTCTGTCCAAAG +
Preference number: 5 (lower is better)
Translates to: VSLLLPIVEVRQFPPKSPLKSRY*GRVCPK
Trigger: CTTTGGACAGACTCTGCCCAAGTACCTGCTCTTTAG...AGGAGACTTTGGGGGAAATTGTCTCACCTCAACGATGGGCAGGAGTAAAGAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTGTCCGGAAGCTGTTCTaGGTGCCTGCCACGTCCAGG +
Preference number: 5 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIVRKLF*VPATSR
Trigger: CCTGGACGTGGCAGGCACCAAGAACAGCTTCCGGAC...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS TCA 90 bp ATATCCTTTCAAACCCGCATAGAAGTTGAAGCCACCTTTAAAGTTTaGGTCAAAGTGGCGCCTAAGGGGTACCCCTGTGGGCATCTCAAA +
Preference number: 5 (lower is better)
Translates to: ISFQTRIEVEATFKV*VKVAPKGYPCGHLK
Trigger: TTTGAGATGCCCACAGGGGTACCCCTTAGGCGCCACTTTGACTCAAACTTTAAAGGTGGCTTCAACTTCTATGCGGGTTTGAAAGGATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTGGTCTGCAAATATCCTaGCTTTGTCATGAGGAGTCG +
Preference number: 5 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLGLQIS*LCHEES
Trigger: CGACTCCTCATGACAAAGCAAGGATATTTGCAGACC...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGCAGGGGTGTAGAAGGTaGCGTGGACATATCCAGTGG +
Preference number: 5 (lower is better)
Translates to: FALVMEVFGRYGNKTGVEQGCRR*RGHIQW
Trigger: CCACTGGATATGTCCACGCAACCTTCTACACCCCTG...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp GTTGAGGTGAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCACTTGGGCTCCAGGGATaGGTGATGTTTTCCAGCTTT +
Preference number: 5 (lower is better)
Translates to: VEVRQFPPKSPYRKRKSSLGLQG*VMFSSF
Trigger: AAAGCTGGAAAACATCACCAATCCCTGGAGCCCAAG...TGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTCACCTCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp AAATGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTAAAGAGCAGGTACTaGGGCAGAGTCTGTCCAAAG +
Preference number: 5 (lower is better)
Translates to: KCFNHHPHNPPEENSVIFLKSRY*GRVCPK
Trigger: CTTTGGACAGACTCTGCCCAAGTACCTGCTCTTTAG...GAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTCTAAAGAGCAGGTACTaGGGCAGAGTCTGTCCAAAG +
Preference number: 5 (lower is better)
Translates to: CVFDFPVFVRIWGYASEALKSRY*GRVCPK
Trigger: CTTTGGACAGACTCTGCCCAAGTACCTGCTCTTTAG...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTTCCTCCTCGAAGAAGTaGAATGGCCGGATCAAGAAG +
Preference number: 5 (lower is better)
Translates to: CVFDFPVFVRIWGYASEASSSKK*NGRIKK
Trigger: CTTCTTGATCCGGCCATTCAACTTCTTCGAGGAGGA...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTCTGTGGAGATGGGTCTaGATGACCAGGACAGATGGT +
Preference number: 5 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFLWRWV*MTRTDG
Trigger: ACCATCTGTCCTGGTCATCAAGACCCATCTCCACAG...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTACCAGTGGCATGCATCTaGGTCTCCATCACACCATTA +
Preference number: 5 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVPVACI*VSITPL
Trigger: TAATGGTGTGATGGAGACCAAGATGCATGCCACTGG...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TGTTTTAACCACCACCCCCACAACCCACCTGAAGAGAATTCTGTGATCTTCCTTTTTTCAATGTTCTCGTaGTTCCGAAGGAACTCCTCA +
Preference number: 5 (lower is better)
Translates to: CFNHHPHNPPEENSVIFLFSMFS*FRRNSS
Trigger: TGAGGAGTTCCTTCGGAACAACGAGAACATTGAAAA...AAGGAAGATCACAGAATTCTCTTCAGGTGGGTTGTGGGGGTGGTGGTTAAAACA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTATCCTCCTCGAAGAAGTaGAATGGCCGGATCAAGAAG +
Preference number: 5 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVSSSKK*NGRIKK
Trigger: CTTCTTGATCCGGCCATTCAACTTCTTCGAGGAGGA...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGGTCTGCAAATATCCTaGCTTTGTCATGAGGAGTCG +
Preference number: 5 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVGLQIS*LCHEES
Trigger: CGACTCCTCATGACAAAGCAAGGATATTTGCAGACC...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp CTAAAAAGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTCTGTGGAGATGGGTCTaGATGACCAGGACAGATGGT +
Preference number: 5 (lower is better)
Translates to: LKSSLQGRNRSFVCLFVCLWRWV*MTRTDG
Trigger: ACCATCTGTCCTGGTCATCAAGACCCATCTCCACAG...ACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCTTTTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTCCAGTGGCATGCATCTaGGTCTCCATCACACCATTA +
Preference number: 5 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFPVACI*VSITPL
Trigger: TAATGGTGTGATGGAGACCAAGATGCATGCCACTGG...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp GAGACAATTTCCCCCAAAGTCTCCTTACAGGAAGAGAAAATCCTCAAATGTTTTCTTGGGCTCCAGGGATaGGTGATGTTTTCCAGCTTT +
Preference number: 5 (lower is better)
Translates to: ETISPKVSLQEEKILKCFLGLQG*VMFSSF
Trigger: AAAGCTGGAAAACATCACCAATCCCTGGAGCCCAAG...AAAACATTTGAGGATTTTCTCTTCCTGTAAGGAGACTTTGGGGGAAATTGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTCTTGGGCTCCAGGGATaGGTGATGTTTTCCAGCTTT +
Preference number: 5 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFLGLQG*VMFSSF
Trigger: AAAGCTGGAAAACATCACCAATCCCTGGAGCCCAAG...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp AGCAGCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTTCCTCCTCGAAGAAGTaGAATGGCCGGATCAAGAAG +
Preference number: 5 (lower is better)
Translates to: SSLQGRNRSFVCLFVCVFSSSKK*NGRIKK
Trigger: CTTCTTGATCCGGCCATTCAACTTCTTCGAGGAGGA...AAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAGAGAGAAACACGGAGTTCTaGGCCAAAGTCAGATTCTTG +
Preference number: 5 (lower is better)
Translates to: FALVMEVFGRYGNKTGVERNTEF*AKVRFL
Trigger: CAAGAATCTGACTTTGGCCAAGAACTCCGTGTTTCT...CTCTACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTAAGAAACACGGAGTTCTaGGCCAAAGTCAGATTCTTG +
Preference number: 5 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVRNTEF*AKVRFL
Trigger: CAAGAATCTGACTTTGGCCAAGAACTCCGTGTTTCT...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp GCCTGCAGGGTAGAAACAGAAGTTTTGTTTGTTTGTTTGTTTGTGTGTTTGATTCCAGTGGCATGCATCTaGGTCTCCATCACACCATTA +
Preference number: 5 (lower is better)
Translates to: ACRVETEVLFVCLFVCLIPVACI*VSITPL
Trigger: TAATGGTGTGATGGAGACCAAGATGCATGCCACTGG...AATCAAACACACAAACAAACAAACAAACAAAACTTCTGTTTCTACCCTGCAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TGTGTGTTTGATTTTCCAGTGTTTGTGAGAATCTGGGGATATGCTTCAGAGGCTTTTTCAATGTTCTCGTaGTTCCGAAGGAACTCCTCA +
Preference number: 5 (lower is better)
Translates to: CVFDFPVFVRIWGYASEAFSMFS*FRRNSS
Trigger: TGAGGAGTTCCTTCGGAACAACGAGAACATTGAAAA...AGCCTCTGAAGCATATCCCCAGATTCTCACAAACACTGGAAAATCAAACACACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS-3UTR CAA 90 bp TCCTTTGCATTGGTCATGGAAGTCTTTGGCAGGTATGGTAATAAAACAGGAGTATTTTCAATGTTCTCGTaGTTCCGAAGGAACTCCTCA +
Preference number: 5 (lower is better)
Translates to: SFALVMEVFGRYGNKTGVFSMFS*FRRNSS
Trigger: TGAGGAGTTCCTTCGGAACAACGAGAACATTGAAAA...TACTCCTGTTTTATTACCATACCTGCCAAAGACTTCCATGACCAATGCAAAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 72 bp AGAGAAGAGTGGTGGCTGCTCTGTGGCACCCGGCAGTaGGTCCTCGAGAACCACTTCCTCCAGAACCACTGC +
Preference number: 6 (lower is better)
Translates to: REEWWLLCGTRQ*VLENHFLQNHC
Trigger: GCAGTGGTTCTGGAGGAAGTGGTTCTCGAGGACCCACTGCCGGGTGCCACAGAGCAGCCACCACTCTTCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 72 bp CCCAGCCGAAGGCCAGACTCATCTGTGCCAGCCTCATaGCTCGCAGGGATAGAATCTGCCAGGTGCAGAGTG +
Preference number: 6 (lower is better)
Translates to: PSRRPDSSVPAS*LAGIESARCRV
Trigger: CACTCTGCACCTGGCAGATTCTATCCCTGCGAGCCATGAGGCTGGCACAGATGAGTCTGGCCTTCGGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204856.2
CDS CAA 72 bp GGTAGAGGAGGTCATACTCCGCTGTGGAGATGGGTCTaGATGACCAGGACAGATGGTGCCCTGGCCTGGGGG +
Preference number: 6 (lower is better)
Translates to: GRGGHTPLWRWV*MTRTDGALAWG
Trigger: CCCCCAGGCCAGGGCACCATCTGTCCTGGTCATCAAGACCCATCTCCACAGCGGAGTATGACCTCCTCTACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS CAA 72 bp CAGGCGGTAGCTCCGCCTGTGGCCCCAACGGTTCTTTaGGGGGCTGCTAAAGAGCAGGTACTTGGGCAGAGT +
Preference number: 6 (lower is better)
Translates to: QAVAPPVAPTVL*GAAKEQVLGQS
Trigger: ACTCTGCCCAAGTACCTGCTCTTTAGCAGCCCCCAAAAGAACCGTTGGGGCCACAGGCGGAGCTACCGCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 72 bp GAGCAGGTACTTGGGCAGAGTCTGTCCAAAGCGGAATaGAGCCTGGTGCTCGTGGGAGTACTGGGTCTGCTC +
Preference number: 6 (lower is better)
Translates to: EQVLGQSLSKAE*SLVLVGVLGLL
Trigger: GAGCAGACCCAGTACTCCCACGAGCACCAGGCTGCATTCCGCTTTGGACAGACTCTGCCCAAGTACCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 72 bp CTCCGTAGAGCACAACGTTGCCCTCTAGCTTATATCTaGGGCCACTGGGCTGGACAACGTGGGGGCCTGCAA +
Preference number: 6 (lower is better)
Translates to: LRRAQRCPLAYI*GHWAGQRGGLQ
Trigger: TTGCAGGCCCCCACGTTGTCCAGCCCAGTGGCCCCAGATATAAGCTAGAGGGCAACGTTGTGCTCTACGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CAA 90 bp GTGGATCTGCAGGCGGTAGCTCCGCCTGTGGCCCCAACGGTTCTTTaGGGGGCTGCTAAAGAGCAGGTACTTGGGCAGAGTCTGTCCAAA +
Preference number: 6 (lower is better)
Translates to: VDLQAVAPPVAPTVL*GAAKEQVLGQSLSK
Trigger: TTTGGACAGACTCTGCCCAAGTACCTGCTCTTTAGCAGCCCCCAAAAGAACCGTTGGGGCCACAGGCGGAGCTACCGCCTGCAGATCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CAA 90 bp TCAGCATGTGGTAGAGGAGGTCATACTCCGCTGTGGAGATGGGTCTaGATGACCAGGACAGATGGTGCCCTGGCCTGGGGGACAGTGCTT +
Preference number: 6 (lower is better)
Translates to: SACGRGGHTPLWRWV*MTRTDGALAWGTVL
Trigger: AAGCACTGTCCCCCAGGCCAGGGCACCATCTGTCCTGGTCATCAAGACCCATCTCCACAGCGGAGTATGACCTCCTCTACCACATGCTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS TCA 72 bp GACACCAAGCAGTCCCTGTTCTCAGGGATCCAGCGCTaGACATGGTTGAGACCGTTGTCCTGGGGCCACACT +
Preference number: 6 (lower is better)
Translates to: DTKQSLFSGIQR*TWLRPLSWGHT
Trigger: AGTGTGGCCCCAGGACAACGGTCTCAACCATGTTCAGCGCTGGATCCCTGAGAACAGGGACTGCTTGGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 72 bp GCATGTGGTAGAGGAGGTCATACTCCGCTGTGGAGATaGGTCTTGATGACCAGGACAGATGGTGCCCTGGCC +
Preference number: 6 (lower is better)
Translates to: ACGRGGHTPLWR*VLMTRTDGALA
Trigger: GGCCAGGGCACCATCTGTCCTGGTCATCAAGACCCATCTCCACAGCGGAGTATGACCTCCTCTACCACATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS GCA 72 bp TGTGGATGTTGCCAAGCAGGTGGGTTTGTAAGCGAGTaGCATGGCGCAGTCCCTCAGGGGTGTAGAAGGTTG +
Preference number: 6 (lower is better)
Translates to: CGCCQAGGFVSE*HGAVPQGCRRL
Trigger: CAACCTTCTACACCCCTGAGGGACTGCGCCATGGCACTCGCTTACAAACCCACCTGCTTGGCAACATCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 72 bp TACTTGGGCAGAGTCTGTCCAAAGCGGAATGCAGCCTaGTGCTCGTGGGAGTACTGGGTCTGCTCAAGTGTG +
Preference number: 6 (lower is better)
Translates to: YLGRVCPKRNAA*CSWEYWVCSSV
Trigger: CACACTTGAGCAGACCCAGTACTCCCACGAGCACCAGGCTGCATTCCGCTTTGGACAGACTCTGCCCAAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CAA 72 bp GAGTGCCATGGCGCAGTCCCTCAGGGGTGTAGAAGGTaGCGTGGACATATCCAGTGGCATGCATCTTGGTCT +
Preference number: 6 (lower is better)
Translates to: ECHGAVPQGCRR*RGHIQWHASWS
Trigger: AGACCAAGATGCATGCCACTGGATATGTCCACGCAACCTTCTACACCCCTGAGGGACTGCGCCATGGCACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS TCA 72 bp AGTCCCTGTTCTCAGGGATCCAGCGCTGAACATGGTTaGGACCGTTGTCCTGGGGCCACACTATCACAGTGT +
Preference number: 6 (lower is better)
Translates to: SPCSQGSSAEHG*DRCPGATLSQC
Trigger: ACACTGTGATAGTGTGGCCCCAGGACAACGGTCTCAACCATGTTCAGCGCTGGATCCCTGAGAACAGGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 72 bp GGTAAGAGAAGCTCCAGTCTCCGTAGAGCACAACGTTaGCCTCTAGCTTATATCTGGGGCCACTGGGCTGGA +
Preference number: 6 (lower is better)
Translates to: GKRSSSLRRAQR*PLAYIWGHWAG
Trigger: TCCAGCCCAGTGGCCCCAGATATAAGCTAGAGGGCAACGTTGTGCTCTACGGAGACTGGAGCTTCTCTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CAA 72 bp CAACGGTTCTTTTGGGGGCTGCTAAAGAGCAGGTACTaGGGCAGAGTCTGTCCAAAGCGGAATGCAGCCTGG +
Preference number: 6 (lower is better)
Translates to: QRFFWGLLKSRY*GRVCPKRNAAW
Trigger: CCAGGCTGCATTCCGCTTTGGACAGACTCTGCCCAAGTACCTGCTCTTTAGCAGCCCCCAAAAGAACCGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CAA 90 bp TTTGTAAGCGAGTGCCATGGCGCAGTCCCTCAGGGGTGTAGAAGGTaGCGTGGACATATCCAGTGGCATGCATCTTGGTCTCCATCACAC +
Preference number: 6 (lower is better)
Translates to: FVSECHGAVPQGCRR*RGHIQWHASWSPSH
Trigger: GTGTGATGGAGACCAAGATGCATGCCACTGGATATGTCCACGCAACCTTCTACACCCCTGAGGGACTGCGCCATGGCACTCGCTTACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS TCA 72 bp CAGCAGATGCTGTGTCTGCCGTCTGTAGAAGTAATATaGCAGCTGCCCAGCCGAAGGCCAGACTCATCTGTG +
Preference number: 6 (lower is better)
Translates to: QQMLCLPSVEVI*QLPSRRPDSSV
Trigger: CACAGATGAGTCTGGCCTTCGGCTGGGCAGCTGTCATATTACTTCTACAGACGGCAGACACAGCATCTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS TCA 72 bp TGGGGGCTCAGGTCTGCAAATATCCTTGCTTTGTCATaGGGAGTCGTCACAGCAGATGCTGTGTCTGCCGTC +
Preference number: 6 (lower is better)
Translates to: WGLRSANILALS*GVVTADAVSAV
Trigger: GACGGCAGACACAGCATCTGCTGTGACGACTCCTCATGACAAAGCAAGGATATTTGCAGACCTGAGCCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS TCA 72 bp TGTTCCACTCTCCAGTCCTGGACATCTGTGCTGCTATaGTCTACAAGGATCTCCAGCCCTGTGGGATGCAGG +
Preference number: 6 (lower is better)
Translates to: CSTLQSWTSVLL*STRISSPVGCR
Trigger: CCTGCATCCCACAGGGCTGGAGATCCTTGTAGATCATAGCAGCACAGATGTCCAGGACTGGAGAGTGGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS TCA 72 bp GCTGGACTAGGGAGTGACTTGGGCTCCAGGGATTGGTaGTGTTTTCCAGCTTTGTCTTCAGTGTCCGGAAGC +
Preference number: 6 (lower is better)
Translates to: AGLGSDLGSRDW*CFPALSSVSGS
Trigger: GCTTCCGGACACTGAAGACAAAGCTGGAAAACATCACCAATCCCTGGAGCCCAAGTCACTCCCTAGTCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 72 bp TGTTCAGCATGTGGTAGAGGAGGTCATACTCCGCTGTaGAGATGGGTCTTGATGACCAGGACAGATGGTGCC +
Preference number: 6 (lower is better)
Translates to: CSACGRGGHTPL*RWVLMTRTDGA
Trigger: GGCACCATCTGTCCTGGTCATCAAGACCCATCTCCACAGCGGAGTATGACCTCCTCTACCACATGCTGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS CCA 72 bp TACCCCTGTGGGCATCTCAAAGAGGCACAGAGCGCGTaGATAAAGGACAGGGCCATCGCTGTCATAATAGTG +
Preference number: 6 (lower is better)
Translates to: YPCGHLKEAQSA*IKDRAIAVIIV
Trigger: CACTATTATGACAGCGATGGCCCTGTCCTTTATCCACGCGCTCTGTGCCTCTTTGAGATGCCCACAGGGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS GCA 72 bp GCTGTGCACAGCCTTTATCTCCTGGGGGCTCAGGTCTaGAAATATCCTTGCTTTGTCATGAGGAGTCGTCAC +
Preference number: 6 (lower is better)
Translates to: AVHSLYLLGAQV*KYPCFVMRSRH
Trigger: GTGACGACTCCTCATGACAAAGCAAGGATATTTGCAGACCTGAGCCCCCAGGAGATAAAGGCTGTGCACAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS GCA 72 bp AGAGCTGTTCCACTCTCCAGTCCTGGACATCTGTGCTaGTATGATCTACAAGGATCTCCAGCCCTGTGGGAT +
Preference number: 6 (lower is better)
Translates to: RAVPLSSPGHLC*YDLQGSPALWD
Trigger: ATCCCACAGGGCTGGAGATCCTTGTAGATCATAGCAGCACAGATGTCCAGGACTGGAGAGTGGAACAGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CCA 72 bp CCTAGGAATGAGAAGCCAGTAGTGTCAAGGAAAAACTaGTGCAGAGGCGTGATGGCTCTGTTCAGCATGTGG +
Preference number: 6 (lower is better)
Translates to: PRNEKPVVSRKN*CRGVMALFSMW
Trigger: CCACATGCTGAACAGAGCCATCACGCCTCTGCACCAGTTTTTCCTTGACACTACTGGCTTCTCATTCCTAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS CAA 72 bp CCTTTATCTCCTGGGGGCTCAGGTCTGCAAATATCCTaGCTTTGTCATGAGGAGTCGTCACAGCAGATGCTG +
Preference number: 6 (lower is better)
Translates to: PLSPGGSGLQIS*LCHEESSQQML
Trigger: CAGCATCTGCTGTGACGACTCCTCATGACAAAGCAAGGATATTTGCAGACCTGAGCCCCCAGGAGATAAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS CAA 90 bp AGCATCTCAATGAGAAACACGGAGTTCTTGGCCAAAGTCAGATTCTaGGATGACTCCAGCCCCAGCTCCTTTCTGCTCATCAGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: SISMRNTEFLAKVRF*DDSSPSSFLLIRKL
Trigger: CAGCTTCCTGATGAGCAGAAAGGAGCTGGGGCTGGAGTCATCCAAGAATCTGACTTTGGCCAAGAACTCCGTGTTTCTCATTGAGATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS GCA 72 bp CTTTATCTCCTGGGGGCTCAGGTCTGCAAATATCCTTaGTTTGTCATGAGGAGTCGTCACAGCAGATGCTGT +
Preference number: 6 (lower is better)
Translates to: LYLLGAQVCKYP*FVMRSRHSRCC
Trigger: ACAGCATCTGCTGTGACGACTCCTCATGACAAAGCAAGGATATTTGCAGACCTGAGCCCCCAGGAGATAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2
CDS CCA 72 bp CACTTCTCCAACTGCGTATTTCTGAGCCAGTTCCTCTaGGCTGTTGTAGAACTTGCCGTTATACCAGAGCTG +
Preference number: 6 (lower is better)
Translates to: HFSNCVFLSQFL*AVVELAVIPEL
Trigger: CAGCTCTGGTATAACGGCAAGTTCTACAACAGCCCAGAGGAACTGGCTCAGAAATACGCAGTTGGAGAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
CDS CAA 72 bp ATGAGAAACACGGAGTTCTTGGCCAAAGTCAGATTCTaGGATGACTCCAGCCCCAGCTCCTTTCTGCTCATC +
Preference number: 6 (lower is better)
Translates to: MRNTEFLAKVRF*DDSSPSSFLLI
Trigger: GATGAGCAGAAAGGAGCTGGGGCTGGAGTCATCCAAGAATCTGACTTTGGCCAAGAACTCCGTGTTTCTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000031835.14
ENSMUST00000162948.7
ENSMUST00000167529.3
ENSMUST00000204856.2