RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AOAH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021322

Ensembl transcript IDs: ENSMUST00000021757.5, ENSMUST00000221982.2

Found 130 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGCTGCTGAAGAAGGTCTTCTGGGCCTGTTGCACAGCAGCCCCTaGAATGAGCAGGTGGGAGGGTTTATCCACCTTTCTCTCCCCCAG +
Preference number: 1 (lower is better)
Translates to: EAAEEGLLGLLHSSP*NEQVGGFIHLSLPQ
Trigger: CTGGGGGAGAGAAAGGTGGATAAACCCTCCCACCTGCTCATTCCAGGGGCTGCTGTGCAACAGGCCCAGAAGACCTTCTTCAGCAGCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CCA 90 bp CTGAGAGGAAAGTGGTCTGCAGAGAGGCTGCTGAAGAAGGTCTTCTaGGCCTGTTGCACAGCAGCCCCTGGAATGAGCAGGTGGGAGGGT +
Preference number: 1 (lower is better)
Translates to: LRGKWSAERLLKKVF*ACCTAAPGMSRWEG
Trigger: ACCCTCCCACCTGCTCATTCCAGGGGCTGCTGTGCAACAGGCCCAGAAGACCTTCTTCAGCAGCCTCTCTGCAGACCACTTTCCTCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR GCA 90 bp AAGTGGTCTGCAGAGAGGCTGCTGAAGAAGGTCTTCTGGGCCTGTTaGACAGCAGCCCCTGGAATGAGCAGGTGGGAGGGTTTATCCACC +
Preference number: 1 (lower is better)
Translates to: KWSAERLLKKVFWAC*TAAPGMSRWEGLST
Trigger: GGTGGATAAACCCTCCCACCTGCTCATTCCAGGGGCTGCTGTGCAACAGGCCCAGAAGACCTTCTTCAGCAGCCTCTCTGCAGACCACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CCA 90 bp TTAATGGACATTGCCATTAAGGTCTGTCCCCAACTGAGAGGAAAGTaGTCTGCAGAGAGGCTGCTGAAGAAGGTCTTCTGGGCCTGTTGC +
Preference number: 1 (lower is better)
Translates to: LMDIAIKVCPQLRGK*SAERLLKKVFWACC
Trigger: GCAACAGGCCCAGAAGACCTTCTTCAGCAGCCTCTCTGCAGACCACTTTCCTCTCAGTTGGGGACAGACCTTAATGGCAATGTCCATTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR GCA 90 bp TCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATGGGTCTTCTGGGCCTGTTaGACAGCAGCCCCTGGAATG +
Preference number: 2 (lower is better)
Translates to: SSDPGILASPGVNCPQRWVFWAC*TAAPGM
Trigger: CATTCCAGGGGCTGCTGTGCAACAGGCCCAGAAGAC...CCATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR GCA 90 bp AAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGTGGGCCAGCATTGCTAGAGAGGAAAGTGGTCTaGAGAGAGGCTGCTGAAGAA +
Preference number: 2 (lower is better)
Translates to: KQDKRIRAVRGGGGPALLERKVV*REAAEE
Trigger: TTCTTCAGCAGCCTCTCTGCAGACCACTTTCCTCTC...TAGCAATGCTGGCCCACCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR GCA 90 bp AAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGTGGGCCAGCATTGCTATCAATAGTTCCTACTTaGCACTGTGGGGCCAACTGT +
Preference number: 2 (lower is better)
Translates to: KQDKRIRAVRGGGGPALLSIVPT*HCGANC
Trigger: ACAGTTGGCCCCACAGTGGCAAGTAGGAACTATTGA...TAGCAATGCTGGCCCACCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CCA 90 bp TGGGCTACACCAAGCACAGGGGTACCTCTGGGCGTACAAAGATTGAACCCTAAACTGAAGAAGGTCTTCTaGGCCTGTTGCACAGCAGCC +
Preference number: 2 (lower is better)
Translates to: WATPSTGVPLGVQRLNPKLKKVF*ACCTAA
Trigger: GGCTGCTGTGCAACAGGCCCAGAAGACCTTCTTCAG...TTTAGGGTTCAATCTTTGTACGCCCAGAGGTACCCCTGTGCTTGGTGTAGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CCA 90 bp TGGGCTACACCAAGCACAGGGGTACCTCTGGGCGTACAAAGATTGAACCCTAAACAACTGAGAGGAAAGTaGTCTGCAGAGAGGCTGCTG +
Preference number: 2 (lower is better)
Translates to: WATPSTGVPLGVQRLNPKQLRGK*SAERLL
Trigger: CAGCAGCCTCTCTGCAGACCACTTTCCTCTCAGTTG...TTTAGGGTTCAATCTTTGTACGCCCAGAGGTACCCCTGTGCTTGGTGTAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CCA 90 bp ATTTCAATAGTTCCTACTTGCCACTGTGGGGCCAACTGTCTCATACCTGTGGGCCCTGGAATGAGCAGGTaGGAGGGTTTATCCACCTTT +
Preference number: 2 (lower is better)
Translates to: ISIVPTCHCGANCLIPVGPGMSR*EGLSTF
Trigger: AAAGGTGGATAAACCCTCCCACCTGCTCATTCCAGG...GCCCACAGGTATGAGACAGTTGGCCCCACAGTGGCAAGTAGGAACTATTGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR GCA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGAGTCCTGGAGTCAATTaGCCACAGAGATGGAGAGAA +
Preference number: 2 (lower is better)
Translates to: RQFILEAGQENQGCKGWGSPGVN*PQRWRE
Trigger: TTCTCTCCATCTCTGTGGGCAATTGACTCCAGGACT...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CAA 90 bp ACTTCCCTTTACAAGGAACTTGAATGTCCTCAGACCCTGGTATCCTaGCAAGTCCTGGAGTCAATTGCCCACAGAGATGGAGAGAAGACT +
Preference number: 2 (lower is better)
Translates to: TSLYKELECPQTLVS*QVLESIAHRDGEKT
Trigger: AGTCTTCTCTCCATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTTCCTTGTAAAGGGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CCA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGAGAGAAGACTTGCTGTaGGAAGCAAAGGACATTGCT +
Preference number: 2 (lower is better)
Translates to: RQFILEAGQENQGCKGWGREDLL*EAKDIA
Trigger: AGCAATGTCCTTTGCTTCCCACAGCAAGTCTTCTCT...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR TCA 90 bp GGGTGGGGGTGGGCCAGCATTGCTATAAGAATGTGTTCAGGTCATTGTTGTAGGAAAGTGTTTCAGAGTTaGACAGAGAAGACTTGCTGT +
Preference number: 2 (lower is better)
Translates to: GWGWASIAIRMCSGHCCRKVFQS*TEKTCC
Trigger: ACAGCAAGTCTTCTCTGTTCAACTCTGAAACACTTT...CCTACAACAATGACCTGAACACATTCTTATAGCAATGCTGGCCCACCCCCACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR TCA 90 bp TGGGCTACACCAAGCACAGGGGTACCTCTGGGCGTACAAAGATTGAACCCTAAAGACTCTAGTACAGATTaGAGTTCATATATGCACAGG +
Preference number: 2 (lower is better)
Translates to: WATPSTGVPLGVQRLNPKDSSTD*SSYMHR
Trigger: CCTGTGCATATATGAACTTCAATCTGTACTAGAGTC...TTTAGGGTTCAATCTTTGTACGCCCAGAGGTACCCCTGTGCTTGGTGTAGCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CCA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGAATTGCCCACAGAGATaGAGAGAAGACTCTAGTACA +
Preference number: 2 (lower is better)
Translates to: RQFILEAGQENQGCKGWGNCPQR*REDSST
Trigger: TGTACTAGAGTCTTCTCTCCATCTCTGTGGGCAATT...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CAA 90 bp GACACAGAAAAGAAAGTGATTGCTAGACTTCCCTTTACAAGGAACTaGAATGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAA +
Preference number: 2 (lower is better)
Translates to: DTEKKVIARLPFTRN*NVLRPWYPCKSWSQ
Trigger: TTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTTCCTTGTAAAGGGAAGTCTAGCAATCACTTTCTTTTCTGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR GCA 90 bp AACTTGAATGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCATTGAAGTTCATATATaGACAGGAACTCTGATCAGG +
Preference number: 2 (lower is better)
Translates to: NLNVLRPWYPCKSWSQLPIEVHI*TGTLIR
Trigger: CCTGATCAGAGTTCCTGTGCATATATGAACTTCAAT...GGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR GCA 72 bp GCAGAGAGGCTGCTGAAGAAGGTCTTCTGGGCCTGTTaGACAGCAGCCCCTGGAATGAGCAGGTGGGAGGGT +
Preference number: 3 (lower is better)
Translates to: AERLLKKVFWAC*TAAPGMSRWEG
Trigger: ACCCTCCCACCTGCTCATTCCAGGGGCTGCTGTGCAACAGGCCCAGAAGACCTTCTTCAGCAGCCTCTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CCA 72 bp CTACTTGCCACTGTGGGGCCAACTGTCTCATACCTGTaGGCTACACCAAGCACAGGGGTACCTCTGGGCGTA +
Preference number: 3 (lower is better)
Translates to: LLATVGPTVSYL*ATPSTGVPLGV
Trigger: TACGCCCAGAGGTACCCCTGTGCTTGGTGTAGCCCACAGGTATGAGACAGTTGGCCCCACAGTGGCAAGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CAA 90 bp ATTTCAATAGTTCCTACTTGCCACTGTGGGGCCAACTGTCTCATACCTGTGGGCGGTCTTCTGGGCCTGTaGCACAGCAGCCCCTGGAAT +
Preference number: 3 (lower is better)
Translates to: ISIVPTCHCGANCLIPVGGLLGL*HSSPWN
Trigger: ATTCCAGGGGCTGCTGTGCAACAGGCCCAGAAGACC...GCCCACAGGTATGAGACAGTTGGCCCCACAGTGGCAAGTAGGAACTATTGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CAA 90 bp AAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGTGGGCCAGCATTGCTAGGGAAGCAAAGGACATaGCTGTTAATGGACATTGCC +
Preference number: 3 (lower is better)
Translates to: KQDKRIRAVRGGGGPALLGKQRT*LLMDIA
Trigger: GGCAATGTCCATTAACAGCAATGTCCTTTGCTTCCC...TAGCAATGCTGGCCCACCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CAA 90 bp TGGGCTACACCAAGCACAGGGGTACCTCTGGGCGTACAAAGATTGAACCCTAAACAGACCCTGGTATCCTaGCAAGTCCTGGAGTCAATT +
Preference number: 3 (lower is better)
Translates to: WATPSTGVPLGVQRLNPKQTLVS*QVLESI
Trigger: AATTGACTCCAGGACTTGCAAGGATACCAGGGTCTG...TTTAGGGTTCAATCTTTGTACGCCCAGAGGTACCCCTGTGCTTGGTGTAGCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CAA 90 bp GGGTGGGGGTGGGCCAGCATTGCTATAAGAATGTGTTCAGGTCATTGTTGTAGGCCCTTTACAAGGAACTaGAATGTCCTCAGACCCTGG +
Preference number: 3 (lower is better)
Translates to: GWGWASIAIRMCSGHCCRPFTRN*NVLRPW
Trigger: CCAGGGTCTGAGGACATTCAAGTTCCTTGTAAAGGG...CCTACAACAATGACCTGAACACATTCTTATAGCAATGCTGGCCCACCCCCACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CCA 72 bp ATTGCCATTAAGGTCTGTCCCCAACTGAGAGGAAAGTaGTCTGCAGAGAGGCTGCTGAAGAAGGTCTTCTGG +
Preference number: 3 (lower is better)
Translates to: IAIKVCPQLRGK*SAERLLKKVFW
Trigger: CCAGAAGACCTTCTTCAGCAGCCTCTCTGCAGACCACTTTCCTCTCAGTTGGGGACAGACCTTAATGGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR GCA 72 bp ACAAGGAACTTGAATGTCCTCAGACCCTGGTATCCTTaGAAGTCCTGGAGTCAATTGCCCACAGAGATGGAG +
Preference number: 3 (lower is better)
Translates to: TRNLNVLRPWYP*KSWSQLPTEME
Trigger: CTCCATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTTCCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CCA 72 bp TTGAATGTCCTCAGACCCTGGTATCCTTGCAAGTCCTaGAGTCAATTGCCCACAGAGATGGAGAGAAGACTC +
Preference number: 3 (lower is better)
Translates to: LNVLRPWYPCKS*SQLPTEMERRL
Trigger: GAGTCTTCTCTCCATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR-3UTR CAA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGTTGAACAGAGAAGACTaGCTGTGGGAAGCAAAGGAC +
Preference number: 3 (lower is better)
Translates to: RQFILEAGQENQGCKGWGLNRED*LWEAKD
Trigger: GTCCTTTGCTTCCCACAGCAAGTCTTCTCTGTTCAA...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CCA 72 bp CTTCCCTTTACAAGGAACTTGAATGTCCTCAGACCCTaGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACA +
Preference number: 3 (lower is better)
Translates to: LPFTRNLNVLRP*YPCKSWSQLPT
Trigger: TGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTTCCTTGTAAAGGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR TCA 72 bp GGGGCTGATGTAAGAAGTCCACCAAATGCCAGTAACTaGGGAGACTTGTGCATGATTTCAATAGTTCCTACT +
Preference number: 3 (lower is better)
Translates to: GADVRSPPNASN*GDLCMISIVPT
Trigger: AGTAGGAACTATTGAAATCATGCACAAGTCTCCTCAGTTACTGGCATTTGGTGGACTTCTTACATCAGCCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR TCA 72 bp TGCCCACAGAGATGGAGAGAAGACTCTAGTACAGATTaGAGTTCATATATGCACAGGAACTCTGATCAGGAT +
Preference number: 3 (lower is better)
Translates to: CPQRWREDSSTD*SSYMHRNSDQD
Trigger: ATCCTGATCAGAGTTCCTGTGCATATATGAACTTCAATCTGTACTAGAGTCTTCTCTCCATCTCTGTGGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CCA 72 bp AAAAGTGTTTCAGAGTTGAACAGAGAAGACTTGCTGTaGGAAGCAAAGGACATTGCTGTTAATGGACATTGC +
Preference number: 3 (lower is better)
Translates to: KSVSELNREDLL*EAKDIAVNGHC
Trigger: GCAATGTCCATTAACAGCAATGTCCTTTGCTTCCCACAGCAAGTCTTCTCTGTTCAACTCTGAAACACTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp AAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGTGGGCCAGCATTGCTAGGGCGGACGGCAGGTTaGGGAAGGAGTTCACAGACA +
Preference number: 4 (lower is better)
Translates to: KQDKRIRAVRGGGGPALLGRTAG*GRSSQT
Trigger: TGTCTGTGAACTCCTTCCTCAACCTGCCGTCCGCCC...TAGCAATGCTGGCCCACCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp ATTTCAATAGTTCCTACTTGCCACTGTGGGGCCAACTGTCTCATACCTGTGGGCGGAGTAGCTGTCACCTaGCTGGTCCTCAGAGGGCAC +
Preference number: 4 (lower is better)
Translates to: ISIVPTCHCGANCLIPVGGVAVT*LVLRGH
Trigger: GTGCCCTCTGAGGACCAGCCAGGTGACAGCTACTCC...GCCCACAGGTATGAGACAGTTGGCCCCACAGTGGCAAGTAGGAACTATTGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp GGGTGGGGGTGGGCCAGCATTGCTATAAGAATGTGTTCAGGTCATTGTTGTAGGGGCCTCCTGGGGAAGTaGGTAGAGATGACACTGTGG +
Preference number: 4 (lower is better)
Translates to: GWGWASIAIRMCSGHCCRGLLGK*VEMTLW
Trigger: CCACAGTGTCATCTCTACCCACTTCCCCAGGAGGCC...CCTACAACAATGACCTGAACACATTCTTATAGCAATGCTGGCCCACCCCCACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp GTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATGGTTACACCAGAGAGTTaGGGCCAGTTGAGCTCATCG +
Preference number: 4 (lower is better)
Translates to: VLRPWYPCKSWSQLPTEMVTPES*GQLSSS
Trigger: CGATGAGCTCAACTGGCCCCAACTCTCTGGTGTAAC...CATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp GTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATGGTGAAGCCACCTCATTaGGGTGGAATCCATCCACAG +
Preference number: 4 (lower is better)
Translates to: VLRPWYPCKSWSQLPTEMVKPPH*GGIHPQ
Trigger: CTGTGGATGGATTCCACCCCAATGAGGTGGCTTCAC...CATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp TGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATAGTCTCCCAGCAAAATaGTTCCCCTGGGCTGTGAAC +
Preference number: 4 (lower is better)
Translates to: CPQTLVSLQVLESIAHRDSLPAK*FPWAVN
Trigger: GTTCACAGCCCAGGGGAATCATTTTGCTGGGAGACT...ATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp TGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATTTTCAGGCAGGTAGCTaGAGAGTCTCTCCATCGCCA +
Preference number: 4 (lower is better)
Translates to: CPQTLVSLQVLESIAHRDFQAGS*RVSPSP
Trigger: TGGCGATGGAGAGACTCTGCAGCTACCTGCCTGAAA...ATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp TGGGCTACACCAAGCACAGGGGTACCTCTGGGCGTACAAAGATTGAACCCTAAAGGACAGCACCCCGCTTaGAAAATTCCAGAGCATAGC +
Preference number: 4 (lower is better)
Translates to: WATPSTGVPLGVQRLNPKGQHPA*KIPEHS
Trigger: GCTATGCTCTGGAATTTTGCAAGCGGGGTGCTGTCC...TTTAGGGTTCAATCTTTGTACGCCCAGAGGTACCCCTGTGCTTGGTGTAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp TGGGCTACACCAAGCACAGGGGTACCTCTGGGCGTACAAAGATTGAACCCTAAAGCCACCTCATTGGGGTaGAATCCATCCACAGGTTCA +
Preference number: 4 (lower is better)
Translates to: WATPSTGVPLGVQRLNPKATSLG*NPSTGS
Trigger: TGAACCTGTGGATGGATTCCACCCCAATGAGGTGGC...TTTAGGGTTCAATCTTTGTACGCCCAGAGGTACCCCTGTGCTTGGTGTAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp GTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATGACAGGTTCAATAAGCTaGCATGGCTGTCCACCTCTT +
Preference number: 4 (lower is better)
Translates to: VLRPWYPCKSWSQLPTEMTGSIS*HGCPPL
Trigger: AAGAGGTGGACAGCCATGGCAGCTTATTGAACCTGT...CATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp TGTAAGGGGTGGGGGTGGGCCAGCATTGCTATAAGAATGTGTTCAGGTCATTGTTCCGGAGGGTCTTGTTaGAAGACATCCAGCCGTTAC +
Preference number: 4 (lower is better)
Translates to: CKGWGWASIAIRMCSGHCSGGSC*KTSSRY
Trigger: GTAACGGCTGGATGTCTTCCAACAAGACCCTCCGGA...ACAATGACCTGAACACATTCTTATAGCAATGCTGGCCCACCCCCACCCCTTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp AAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGTGGGCCAGCATTGCTAAACACTGTGCTTGTCTaGATCTATGTCTTTGAATGG +
Preference number: 4 (lower is better)
Translates to: KQDKRIRAVRGGGGPALLNTVLV*IYVFEW
Trigger: CCATTCAAAGACATAGATTCAGACAAGCACAGTGTT...TAGCAATGCTGGCCCACCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp GTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATGTTACAGTTGGAGTCCTaGTGGATATCCCAGTTGTCT +
Preference number: 4 (lower is better)
Translates to: VLRPWYPCKSWSQLPTEMLQLES*WISQLS
Trigger: AGACAACTGGGATATCCATCAGGACTCCAACTGTAA...CATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp AACTTGAATGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCAATGGCTGGATGGTCTaGTGCCTGGTTCCTAGACAA +
Preference number: 4 (lower is better)
Translates to: NLNVLRPWYPCKSWSQLPNGWMV*CLVPRQ
Trigger: TTGTCTAGGAACCAGGCATCAGACCATCCAGCCATT...GGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGAGCCGTTACAGGGATTaGGCTGCAGGCATCTTAGAA +
Preference number: 4 (lower is better)
Translates to: RQFILEAGQENQGCKGWGSRYRD*AAGILE
Trigger: TTCTAAGATGCCTGCAGCTCAATCCCTGTAACGGCT...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGATTTGCTTGCAGAAGTaGAGCCACCTCATTGGGGTG +
Preference number: 4 (lower is better)
Translates to: RQFILEAGQENQGCKGWGICLQK*SHLIGV
Trigger: CACCCCAATGAGGTGGCTTCACTTCTGCAAGCAAAT...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp GGGTGGGGGTGGGCCAGCATTGCTATAAGAATGTGTTCAGGTCATTGTTGTAGGGGGTGGTATCGGTTGTaGAAGCTATCCCAGAGAAAA +
Preference number: 4 (lower is better)
Translates to: GWGWASIAIRMCSGHCCRGWYRL*KLSQRK
Trigger: TTTTCTCTGGGATAGCTTGCACAACCGATACCACCC...CCTACAACAATGACCTGAACACATTCTTATAGCAATGCTGGCCCACCCCCACCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp TCCCCAACTGAGAGGAAAGTGGTCTGCAGAGAGGCTGCTGAAGAAGGTCTTCTGAGGAGTGGTCATTTCTaGTACTGTGTCAGCTTTCGA +
Preference number: 4 (lower is better)
Translates to: SPTERKVVCREAAEEGLLRSGHF*YCVSFR
Trigger: TCGAAAGCTGACACAGTACCAGAAATGACCACTCCT...CAGAAGACCTTCTTCAGCAGCCTCTCTGCAGACCACTTTCCTCTCAGTTGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CAA 72 bp CTGAGGAGACTTGTGCATGATTTCAATAGTTCCTACTaGCCACTGTGGGGCCAACTGTCTCATACCTGTGGG +
Preference number: 4 (lower is better)
Translates to: LRRLVHDFNSSY*PLWGQLSHTCG
Trigger: CCCACAGGTATGAGACAGTTGGCCCCACAGTGGCAAGTAGGAACTATTGAAATCATGCACAAGTCTCCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp TGTTTCAGAGTTGAACAGAGAAGACTTGCTGTGGGAAGCAAAGGACATTGCTGTGGGCACAGAGGCCAATaGGTGAGAGAGCAGAAGAAG +
Preference number: 4 (lower is better)
Translates to: CFRVEQRRLAVGSKGHCCGHRGQ*VREQKK
Trigger: CTTCTTCTGCTCTCTCACTCATTGGCCTCTGTGCCC...ACAGCAATGTCCTTTGCTTCCCACAGCAAGTCTTCTCTGTTCAACTCTGAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp AACTTGAATGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCTGGACTGAAGAGTTGTaGACTTCAGCCAGTTGCTCA +
Preference number: 4 (lower is better)
Translates to: NLNVLRPWYPCKSWSQLPWTEEL*TSASCS
Trigger: TGAGCAACTGGCTGAAGTTCACAACTCTTCAGTCCA...GGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp TGTAAGGGGTGGGGGTGGGCCAGCATTGCTATAAGAATGTGTTCAGGTCATTGTCTGCCATTGGGCAGGTaGGAATTTAGATGTGTCAGA +
Preference number: 4 (lower is better)
Translates to: CKGWGWASIAIRMCSGHCLPLGR*EFRCVR
Trigger: TCTGACACATCTAAATTCTCACCTGCCCAATGGCAG...ACAATGACCTGAACACATTCTTATAGCAATGCTGGCCCACCCCCACCCCTTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp TGGGCTACACCAAGCACAGGGGTACCTCTGGGCGTACAAAGATTGAACCCTAAATTACAGGGATTGAGCTaGAGGCATCTTAGAAAGGAG +
Preference number: 4 (lower is better)
Translates to: WATPSTGVPLGVQRLNPKLQGLS*RHLRKE
Trigger: CTCCTTTCTAAGATGCCTGCAGCTCAATCCCTGTAA...TTTAGGGTTCAATCTTTGTACGCCCAGAGGTACCCCTGTGCTTGGTGTAGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp AACTTGAATGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCTGGCATAAAGGACAATaGCTGGATGGTCTGATGCCT +
Preference number: 4 (lower is better)
Translates to: NLNVLRPWYPCKSWSQLPWHKGQ*LDGLMP
Trigger: AGGCATCAGACCATCCAGCCATTGTCCTTTATGCCA...GGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CAA 72 bp TACAAGGAACTTGAATGTCCTCAGACCCTGGTATCCTaGCAAGTCCTGGAGTCAATTGCCCACAGAGATGGA +
Preference number: 4 (lower is better)
Translates to: YKELECPQTLVS*QVLESIAHRDG
Trigger: TCCATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTTCCTTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp GTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATGGTTGGGAAAACACTGTaGTTGTCTGAATCTATGTCT +
Preference number: 4 (lower is better)
Translates to: VLRPWYPCKSWSQLPTEMVGKTL*LSESMS
Trigger: AGACATAGATTCAGACAAGCACAGTGTTTTCCCAAC...CATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp GTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATGTGTCCACCTCTTTTCTaGCAGTCCTCTATTATTTCA +
Preference number: 4 (lower is better)
Translates to: VLRPWYPCKSWSQLPTEMCPPLF*QSSIIS
Trigger: TGAAATAATAGAGGACTGGCAGAAAAGAGGTGGACA...CATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp TGTTTCAGAGTTGAACAGAGAAGACTTGCTGTGGGAAGCAAAGGACATTGCTGTGTAGAGATGACACTGTaGTTGGACAGCACCCCGCTT +
Preference number: 4 (lower is better)
Translates to: CFRVEQRRLAVGSKGHCCVEMTL*LDSTPL
Trigger: AAGCGGGGTGCTGTCCAACCACAGTGTCATCTCTAC...ACAGCAATGTCCTTTGCTTCCCACAGCAAGTCTTCTCTGTTCAACTCTGAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp GGGTGGGGGTGGGCCAGCATTGCTATAAGAATGTGTTCAGGTCATTGTTGTAGGAATCTGAGAGTTGAATaGATTCTCCTTTCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: GWGWASIAIRMCSGHCCRNLRVE*ILLSQD
Trigger: GTCCTGGGAAAGGAGAATCCATTCAACTCTCAGATT...CCTACAACAATGACCTGAACACATTCTTATAGCAATGCTGGCCCACCCCCACCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp ATTGCTAGACTTCCCTTTACAAGGAACTTGAATGTCCTCAGACCCTGGTATCCTGTTCACAGACATCTGTaGAGCTGTCAGCCATTCAGG +
Preference number: 4 (lower is better)
Translates to: IARLPFTRNLNVLRPWYPVHRHL*SCQPFR
Trigger: CCTGAATGGCTGACAGCTTCACAGATGTCTGTGAAC...AGGATACCAGGGTCTGAGGACATTCAAGTTCCTTGTAAAGGGAAGTCTAGCAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGCTTCAATTCCACTCGTaGAGTCCAGAAATCCAGTTA +
Preference number: 4 (lower is better)
Translates to: RQFILEAGQENQGCKGWGLQFHS*SPEIQL
Trigger: TAACTGGATTTCTGGACTCCACGAGTGGAATTGAAG...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGCATCGTTTCCAATCATaGCATAAAGGACAATGGCTG +
Preference number: 4 (lower is better)
Translates to: RQFILEAGQENQGCKGWGHRFQS*HKGQWL
Trigger: CAGCCATTGTCCTTTATGCCATGATTGGAAACGATG...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGTTTTCTGGCAGATCTTaGTCAAAAATGGTAGGGAAC +
Preference number: 4 (lower is better)
Translates to: RQFILEAGQENQGCKGWGFSGRS*SKMVGN
Trigger: GTTCCCTACCATTTTTGACCAAGATCTGCCAGAAAA...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR TCA 90 bp TACAAGGAACTTGAATGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCACATCGAGTAGTTTTATaGTGTCTGAGCCAAATGTCT +
Preference number: 4 (lower is better)
Translates to: YKELECPQTLVSLQVLESHRVVL*CLSQMS
Trigger: AGACATTTGGCTCAGACATCATAAAACTACTCGATG...TGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTTCCTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp TGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATAAAGGAGAAGAACTGTaGATAGGTCACATCTTTATT +
Preference number: 4 (lower is better)
Translates to: CPQTLVSLQVLESIAHRDKGEEL*IGHIFI
Trigger: AATAAAGATGTGACCTATGCACAGTTCTTCTCCTTT...ATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CAA 72 bp AAGAAAGTGATTGCTAGACTTCCCTTTACAAGGAACTaGAATGTCCTCAGACCCTGGTATCCTTGCAAGTCC +
Preference number: 4 (lower is better)
Translates to: KKVIARLPFTRN*NVLRPWYPCKS
Trigger: GGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTTCCTTGTAAAGGGAAGTCTAGCAATCACTTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp GAGGCAAATATTGGAGTGCAGACAGTTTATTTTGGAAGCAGGACAAGAGAATCACAGACACGATTTGCTTaGAGAAGTGAAGCCACCTCA +
Preference number: 4 (lower is better)
Translates to: EANIGVQTVYFGSRTRESQTRFA*RSEATS
Trigger: TGAGGTGGCTTCACTTCTGCAAGCAAATCGTGTCTG...TGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCTGCACTCCAATATTTGCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CAA 72 bp TTATTGAGGCAAATATTGGAGTGCAGACAGTTTATTTaGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGG +
Preference number: 4 (lower is better)
Translates to: LLRQILECRQFI*EAGQENQGCKG
Trigger: CCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCTGCACTCCAATATTTGCCTCAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp GAGGCAAATATTGGAGTGCAGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGATCAATACCCCAGATaGCATTACAGTTGGAGTCCT +
Preference number: 4 (lower is better)
Translates to: EANIGVQTVYFGSRTRESDQYPR*HYSWSP
Trigger: AGGACTCCAACTGTAATGGCATCTGGGGTATTGATC...TGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCTGCACTCCAATATTTGCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp CCTAAATCTGTGGCATCTCAGAAAAGGCTGAGGAAAGTGAGACACAGAAAAGAAATCTATGTCTTTGAATaGCACGGCCTTCTTTATAGA +
Preference number: 4 (lower is better)
Translates to: PKSVASQKRLRKVRHRKEIYVFE*HGLLYR
Trigger: TCTATAAAGAAGGCCGTGCCATTCAAAGACATAGAT...TTCTTTTCTGTGTCTCACTTTCCTCAGCCTTTTCTGAGATGCCACAGATTTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
3UTR CAA 72 bp ATTGGAAAAAGTGTTTCAGAGTTGAACAGAGAAGACTaGCTGTGGGAAGCAAAGGACATTGCTGTTAATGGA +
Preference number: 4 (lower is better)
Translates to: IGKSVSELNRED*LWEAKDIAVNG
Trigger: TCCATTAACAGCAATGTCCTTTGCTTCCCACAGCAAGTCTTCTCTGTTCAACTCTGAAACACTTTTTCCAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR GCA 90 bp GAGGCAAATATTGGAGTGCAGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGATAGTCTCTGTGATTaGAATGGTTTCTCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: EANIGVQTVYFGSRTRESDSLCD*NGFSFS
Trigger: TGAGAAAGAGAAACCATTGCAATCACAGAGACTATC...TGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCTGCACTCCAATATTTGCCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CCA 90 bp ATGCACAGGAACTCTGATCAGGATCCTTGTAGAAAATGGTATATAGTATTTGTAAGATGCCATTACAGTTaGAGTCCTGATGGATATCCC +
Preference number: 4 (lower is better)
Translates to: MHRNSDQDPCRKWYIVFVRCHYS*SPDGYP
Trigger: GGGATATCCATCAGGACTCCAACTGTAATGGCATCT...TACAAATACTATATACCATTTTCTACAAGGATCCTGATCAGAGTTCCTGTGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 90 bp TCAATTCCACTCGTGGAGTCCAGAAATCCAGTTACACCAGAGAGTTaGGGCCAGTTGAGCTCATCGGTAAGGGCGGACGGCAGGTTGAGG +
Preference number: 5 (lower is better)
Translates to: SIPLVESRNPVTPES*GQLSSSVRADGRLR
Trigger: CCTCAACCTGCCGTCCGCCCTTACCGATGAGCTCAACTGGCCCCAACTCTCTGGTGTAACTGGATTTCTGGACTCCACGAGTGGAATTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp AAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGTGGGCCAGCATTGCTAAGAGGGTGGTATCGGTaGTGCAAGCTATCCCAGAGA +
Preference number: 5 (lower is better)
Translates to: KQDKRIRAVRGGGGPALLRGWYR*CKLSQR
Trigger: TCTCTGGGATAGCTTGCACAACCGATACCACCCTCT...TAGCAATGCTGGCCCACCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp TCCCCAACTGAGAGGAAAGTGGTCTGCAGAGAGGCTGCTGAAGAAGGTCTTCTGGTCCGGAGGGTCTTGTaGGAAGACATCCAGCCGTTA +
Preference number: 5 (lower is better)
Translates to: SPTERKVVCREAAEEGLLVRRVL*EDIQPL
Trigger: TAACGGCTGGATGTCTTCCAACAAGACCCTCCGGAC...CAGAAGACCTTCTTCAGCAGCCTCTCTGCAGACCACTTTCCTCTCAGTTGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp TGGGCTACACCAAGCACAGGGGTACCTCTGGGCGTACAAAGATTGAACCCTAAAAGAGTCCGGAGGGTCTaGTTGGAAGACATCCAGCCG +
Preference number: 5 (lower is better)
Translates to: WATPSTGVPLGVQRLNPKRVRRV*LEDIQP
Trigger: CGGCTGGATGTCTTCCAACAAGACCCTCCGGACTCT...TTTAGGGTTCAATCTTTGTACGCCCAGAGGTACCCCTGTGCTTGGTGTAGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 90 bp TCCCAGACACGATTTGCTTGCAGAAGTGAAGCCACCTCATTGGGGTaGAATCCATCCACAGGTTCAATAAGCTGCCATGGCTGTCCACCT +
Preference number: 5 (lower is better)
Translates to: SQTRFACRSEATSLG*NPSTGSISCHGCPP
Trigger: AGGTGGACAGCCATGGCAGCTTATTGAACCTGTGGATGGATTCCACCCCAATGAGGTGGCTTCACTTCTGCAAGCAAATCGTGTCTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp GTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTGCCCACAGAGATGCCCGGGTACACTGTCTaGTCACTGTCATTACAGTCA +
Preference number: 5 (lower is better)
Translates to: VLRPWYPCKSWSQLPTEMPGYTV*SLSLQS
Trigger: TGACTGTAATGACAGTGACAAGACAGTGTACCCGGG...CATCTCTGTGGGCAATTGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 90 bp CTTTTCAGGCAGGTAGCTGCAGAGTCTCTCCATCGCCACCTGGACTaGAGAGTTGTGAACTTCAGCCAGTTGCTCAATCACAGATACCAG +
Preference number: 5 (lower is better)
Translates to: LFRQVAAESLHRHLD*RVVNFSQLLNHRYQ
Trigger: CTGGTATCTGTGATTGAGCAACTGGCTGAAGTTCACAACTCTTCAGTCCAGGTGGCGATGGAGAGACTCTGCAGCTACCTGCCTGAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021757.5
ENSMUST00000221982.2
CDS TCA 90 bp GAGTCCGGAGGGTCTTGTTGGAAGACATCCAGCCGTTACAGGGATTaGGCTGCAGGCATCTTAGAAAGGAGAAGAACTGTGCATAGGTCA +
Preference number: 5 (lower is better)
Translates to: ESGGSCWKTSSRYRD*AAGILERRRTVHRS
Trigger: TGACCTATGCACAGTTCTTCTCCTTTCTAAGATGCCTGCAGCTCAATCCCTGTAACGGCTGGATGTCTTCCAACAAGACCCTCCGGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp ATTTCAATAGTTCCTACTTGCCACTGTGGGGCCAACTGTCTCATACCTGTGGGCCAGCCGTTACAGGGATaGAGCTGCAGGCATCTTAGA +
Preference number: 5 (lower is better)
Translates to: ISIVPTCHCGANCLIPVGQPLQG*SCRHLR
Trigger: TCTAAGATGCCTGCAGCTCAATCCCTGTAACGGCTG...GCCCACAGGTATGAGACAGTTGGCCCCACAGTGGCAAGTAGGAACTATTGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGAGTGAAGCCACCTCATaGGGGTGGAATCCATCCACA +
Preference number: 5 (lower is better)
Translates to: RQFILEAGQENQGCKGWGSEATS*GWNPST
Trigger: TGTGGATGGATTCCACCCCAATGAGGTGGCTTCACT...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 90 bp ATGGAATTCCATCTTTCGGATCAATACCCCAGATGCCATTACAGTTaGAGTCCTGATGGATATCCCAGTTGTCTGGCCTTCTGCCCGGGT +
Preference number: 5 (lower is better)
Translates to: MEFHLSDQYPRCHYS*SPDGYPSCLAFCPG
Trigger: ACCCGGGCAGAAGGCCAGACAACTGGGATATCCATCAGGACTCCAACTGTAATGGCATCTGGGGTATTGATCCGAAAGATGGAATTCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 90 bp GGCTGCCATTGGGCAGGTGAGAATTTAGATGTGTCAGAGTCTGCATaGCGTTGGCGTACATTTGTTCAGGAGTGGTCATTTCTGGTACTG +
Preference number: 5 (lower is better)
Translates to: GCHWAGENLDVSESA*RWRTFVQEWSFLVL
Trigger: CAGTACCAGAAATGACCACTCCTGAACAAATGTACGCCAACGTCATGCAGACTCTGACACATCTAAATTCTCACCTGCCCAATGGCAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS GCA 90 bp GAAGCCACCTCATTGGGGTGGAATCCATCCACAGGTTCAATAAGCTaGCATGGCTGTCCACCTCTTTTCTGCCAGTCCTCTATTATTTCA +
Preference number: 5 (lower is better)
Translates to: EATSLGWNPSTGSIS*HGCPPLFCQSSIIS
Trigger: TGAAATAATAGAGGACTGGCAGAAAAGAGGTGGACAGCCATGGCAGCTTATTGAACCTGTGGATGGATTCCACCCCAATGAGGTGGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 90 bp CACCTCATTGGGGTGGAATCCATCCACAGGTTCAATAAGCTGCCATaGCTGTCCACCTCTTTTCTGCCAGTCCTCTATTATTTCATGGAA +
Preference number: 5 (lower is better)
Translates to: HLIGVESIHRFNKLP*LSTSFLPVLYYFME
Trigger: TTCCATGAAATAATAGAGGACTGGCAGAAAAGAGGTGGACAGCCATGGCAGCTTATTGAACCTGTGGATGGATTCCACCCCAATGAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 90 bp CCATCTGGTAAGCCGTATAAAATAACGTGGCTGCCATTGGGCAGGTaGGAATTTAGATGTGTCAGAGTCTGCATGACGTTGGCGTACATT +
Preference number: 5 (lower is better)
Translates to: PSGKPYKITWLPLGR*EFRCVRVCMTLAYI
Trigger: AATGTACGCCAACGTCATGCAGACTCTGACACATCTAAATTCTCACCTGCCCAATGGCAGCCACGTTATTTTATACGGCTTACCAGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 90 bp CCATTGAAGCTGTATCTTTTCCCAGACACGATTTGCTTGCAGAAGTaGAGCCACCTCATTGGGGTGGAATCCATCCACAGGTTCAATAAG +
Preference number: 5 (lower is better)
Translates to: PLKLYLFPDTICLQK*SHLIGVESIHRFNK
Trigger: CTTATTGAACCTGTGGATGGATTCCACCCCAATGAGGTGGCTTCACTTCTGCAAGCAAATCGTGTCTGGGAAAAGATACAGCTTCAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 90 bp GTGTCCTCCTTGGTCTCCAAACACCTCTTCAATCTGAGAGTTGAATaGATTCTCCTTTCCCAGGACATGAGGCCATTGAAGCTGTATCTT +
Preference number: 5 (lower is better)
Translates to: VSSLVSKHLFNLRVE*ILLSQDMRPLKLYL
Trigger: AAGATACAGCTTCAATGGCCTCATGTCCTGGGAAAGGAGAATCCATTCAACTCTCAGATTGAAGAGGTGTTTGGAGACCAAGGAGGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp AGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAGGGCTGTAAGGGGTGGGGGTCTGAATCTATGTCTTaGAATGGCACGGCCTTCTTT +
Preference number: 5 (lower is better)
Translates to: RQFILEAGQENQGCKGWGSESMS*NGTAFF
Trigger: AAAGAAGGCCGTGCCATTCAAAGACATAGATTCAGA...CCCCCACCCCTTACAGCCCTGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp TCCCCAACTGAGAGGAAAGTGGTCTGCAGAGAGGCTGCTGAAGAAGGTCTTCTGAAGATGCACCATTTTTaGAGATACTCTGATAGTCTC +
Preference number: 5 (lower is better)
Translates to: SPTERKVVCREAAEEGLLKMHHF*RYSDSL
Trigger: GAGACTATCAGAGTATCTCAAAAAATGGTGCATCTT...CAGAAGACCTTCTTCAGCAGCCTCTCTGCAGACCACTTTCCTCTCAGTTGGGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp TGTTTCAGAGTTGAACAGAGAAGACTTGCTGTGGGAAGCAAAGGACATTGCTGTGTGAACTTCAGCCAGTaGCTCAATCACAGATACCAG +
Preference number: 5 (lower is better)
Translates to: CFRVEQRRLAVGSKGHCCVNFSQ*LNHRYQ
Trigger: CTGGTATCTGTGATTGAGCAACTGGCTGAAGTTCAC...ACAGCAATGTCCTTTGCTTCCCACAGCAAGTCTTCTCTGTTCAACTCTGAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp ATGCACAGGAACTCTGATCAGGATCCTTGTAGAAAATGGTATATAGTATTTGTAGAGAGTTGGGGCCAGTaGAGCTCATCGGTAAGGGCG +
Preference number: 5 (lower is better)
Translates to: MHRNSDQDPCRKWYIVFVESWGQ*SSSVRA
Trigger: CGCCCTTACCGATGAGCTCAACTGGCCCCAACTCTC...TACAAATACTATATACCATTTTCTACAAGGATCCTGATCAGAGTTCCTGTGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp TACAAGGAACTTGAATGTCCTCAGACCCTGGTATCCTTGCAAGTCCTGGAGTCAATTTTCTGGCAGATCTaGGTCAAAAATGGTAGGGAA +
Preference number: 5 (lower is better)
Translates to: YKELECPQTLVSLQVLESIFWQI*VKNGRE
Trigger: TTCCCTACCATTTTTGACCAAGATCTGCCAGAAAAT...TGACTCCAGGACTTGCAAGGATACCAGGGTCTGAGGACATTCAAGTTCCTTGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp GAGGCAAATATTGGAGTGCAGACAGTTTATTTTGGAAGCAGGACAAGAGAATCAAGAGTCTGCATGACGTaGGCGTACATTTGTTCAGGA +
Preference number: 5 (lower is better)
Translates to: EANIGVQTVYFGSRTRESRVCMT*AYICSG
Trigger: TCCTGAACAAATGTACGCCAACGTCATGCAGACTCT...TGATTCTCTTGTCCTGCTTCCAAAATAAACTGTCTGCACTCCAATATTTGCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp CCTAAATCTGTGGCATCTCAGAAAAGGCTGAGGAAAGTGAGACACAGAAAAGAAGGGAAAACACTGTGCTaGTCTGAATCTATGTCTTTG +
Preference number: 5 (lower is better)
Translates to: PKSVASQKRLRKVRHRKEGKTLC*SESMSL
Trigger: CAAAGACATAGATTCAGACAAGCACAGTGTTTTCCC...TTCTTTTCTGTGTCTCACTTTCCTCAGCCTTTTCTGAGATGCCACAGATTTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 90 bp AACATCGTTTCCAATCATGGCATAAAGGACAATGGCTGGATGGTCTaGTGCCTGGTTCCTAGACAAGCTTTCAATAAAATTCTTCAGATT +
Preference number: 5 (lower is better)
Translates to: NIVSNHGIKDNGWMV*CLVPRQAFNKILQI
Trigger: AATCTGAAGAATTTTATTGAAAGCTTGTCTAGGAACCAGGCATCAGACCATCCAGCCATTGTCCTTTATGCCATGATTGGAAACGATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS-3UTR CAA 90 bp ATGCACAGGAACTCTGATCAGGATCCTTGTAGAAAATGGTATATAGTATTTGTACAGGACATGAGGCCATaGAAGCTGTATCTTTTCCCA +
Preference number: 5 (lower is better)
Translates to: MHRNSDQDPCRKWYIVFVQDMRP*KLYLFP
Trigger: TGGGAAAAGATACAGCTTCAATGGCCTCATGTCCTG...TACAAATACTATATACCATTTTCTACAAGGATCCTGATCAGAGTTCCTGTGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 90 bp ATGTCTTTGAATGGCACGGCCTTCTTTATAGATAATTCAATTTTCTaGCAGATCTTGGTCAAAAATGGTAGGGAACAAATGTTACGACCA +
Preference number: 5 (lower is better)
Translates to: MSLNGTAFFIDNSIF*QILVKNGREQMLRP
Trigger: TGGTCGTAACATTTGTTCCCTACCATTTTTGACCAAGATCTGCCAGAAAATTGAATTATCTATAAAGAAGGCCGTGCCATTCAAAGACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 72 bp CTCGTGGAGTCCAGAAATCCAGTTACACCAGAGAGTTaGGGCCAGTTGAGCTCATCGGTAAGGGCGGACGGC +
Preference number: 6 (lower is better)
Translates to: LVESRNPVTPES*GQLSSSVRADG
Trigger: GCCGTCCGCCCTTACCGATGAGCTCAACTGGCCCCAACTCTCTGGTGTAACTGGATTTCTGGACTCCACGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 90 bp ACGACCACTTCTGGGATATTTCATGGTAGAGGACCTCCTGAGGACTaGTCTCGCCTTCTCCAGTGCAGACTCCCAGGCCTCCTGGGGAAG +
Preference number: 6 (lower is better)
Translates to: TTTSGIFHGRGPPED*SRLLQCRLPGLLGK
Trigger: CTTCCCCAGGAGGCCTGGGAGTCTGCACTGGAGAAGGCGAGACAAGTCCTCAGGAGGTCCTCTACCATGAAATATCCCAGAAGTGGTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 90 bp CTCGTGGAGTCCAGAAATCCAGTTACACCAGAGAGTTGGGGCCAGTaGAGCTCATCGGTAAGGGCGGACGGCAGGTTGAGGAAGGAGTTC +
Preference number: 6 (lower is better)
Translates to: LVESRNPVTPESWGQ*SSSVRADGRLRKEF
Trigger: GAACTCCTTCCTCAACCTGCCGTCCGCCCTTACCGATGAGCTCAACTGGCCCCAACTCTCTGGTGTAACTGGATTTCTGGACTCCACGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 72 bp GGCCAGTTGAGCTCATCGGTAAGGGCGGACGGCAGGTaGAGGAAGGAGTTCACAGACATCTGTGAAGCTGTC +
Preference number: 6 (lower is better)
Translates to: GQLSSSVRADGR*RKEFTDICEAV
Trigger: GACAGCTTCACAGATGTCTGTGAACTCCTTCCTCAACCTGCCGTCCGCCCTTACCGATGAGCTCAACTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 90 bp GAGAGTTGGGGCCAGTTGAGCTCATCGGTAAGGGCGGACGGCAGGTaGAGGAAGGAGTTCACAGACATCTGTGAAGCTGTCAGCCATTCA +
Preference number: 6 (lower is better)
Translates to: ESWGQLSSSVRADGR*RKEFTDICEAVSHS
Trigger: TGAATGGCTGACAGCTTCACAGATGTCTGTGAACTCCTTCCTCAACCTGCCGTCCGCCCTTACCGATGAGCTCAACTGGCCCCAACTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS GCA 72 bp AGGCGGTCTTCAAGAACAGCTTTTCAGGCAGGTAGCTaGAGAGTCTCTCCATCGCCACCTGGACTGAAGAGT +
Preference number: 6 (lower is better)
Translates to: RRSSRTAFQAGS*RVSPSPPGLKS
Trigger: ACTCTTCAGTCCAGGTGGCGATGGAGAGACTCTGCAGCTACCTGCCTGAAAAGCTGTTCTTGAAGACCGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021757.5
ENSMUST00000221982.2
CDS CAA 72 bp TACAGTCACGCCCTCGCCAGTGGTAGCCCCGCAGCGTaGGGAAAACACTGTGCTTGTCTGAATCTATGTCTT +
Preference number: 6 (lower is better)
Translates to: YSHALASGSPAA*GKHCACLNLCL
Trigger: AAGACATAGATTCAGACAAGCACAGTGTTTTCCCAACGCTGCGGGGCTACCACTGGCGAGGGCGTGACTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 90 bp GAGAGTTGTTCGGCTCTCTCTGAAGTGAGAGTCCGGAGGGTCTTGTaGGAAGACATCCAGCCGTTACAGGGATTGAGCTGCAGGCATCTT +
Preference number: 6 (lower is better)
Translates to: ESCSALSEVRVRRVL*EDIQPLQGLSCRHL
Trigger: AAGATGCCTGCAGCTCAATCCCTGTAACGGCTGGATGTCTTCCAACAAGACCCTCCGGACTCTCACTTCAGAGAGAGCCGAACAACTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 90 bp TTGGAGAGTTGTTCGGCTCTCTCTGAAGTGAGAGTCCGGAGGGTCTaGTTGGAAGACATCCAGCCGTTACAGGGATTGAGCTGCAGGCAT +
Preference number: 6 (lower is better)
Translates to: LESCSALSEVRVRRV*LEDIQPLQGLSCRH
Trigger: ATGCCTGCAGCTCAATCCCTGTAACGGCTGGATGTCTTCCAACAAGACCCTCCGGACTCTCACTTCAGAGAGAGCCGAACAACTCTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 72 bp CAGGTAGCTGCAGAGTCTCTCCATCGCCACCTGGACTaGAGAGTTGTGAACTTCAGCCAGTTGCTCAATCAC +
Preference number: 6 (lower is better)
Translates to: QVAAESLHRHLD*RVVNFSQLLNH
Trigger: GTGATTGAGCAACTGGCTGAAGTTCACAACTCTTCAGTCCAGGTGGCGATGGAGAGACTCTGCAGCTACCTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021757.5
ENSMUST00000221982.2
CDS GCA 72 bp GGTAGAGATGACACTGTGGTTGGACAGCACCCCGCTTaGAAAATTCCAGAGCATAGCACACCACATCAGCCT +
Preference number: 6 (lower is better)
Translates to: GRDDTVVGQHPA*KIPEHSTPHQP
Trigger: AGGCTGATGTGGTGTGCTATGCTCTGGAATTTTGCAAGCGGGGTGCTGTCCAACCACAGTGTCATCTCTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021757.5
ENSMUST00000221982.2
CDS GCA 72 bp TCATTGGGGTGGAATCCATCCACAGGTTCAATAAGCTaGCATGGCTGTCCACCTCTTTTCTGCCAGTCCTCT +
Preference number: 6 (lower is better)
Translates to: SLGWNPSTGSIS*HGCPPLFCQSS
Trigger: AGAGGACTGGCAGAAAAGAGGTGGACAGCCATGGCAGCTTATTGAACCTGTGGATGGATTCCACCCCAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 90 bp CCAGGACATGAGGCCATTGAAGCTGTATCTTTTCCCAGACACGATTaGCTTGCAGAAGTGAAGCCACCTCATTGGGGTGGAATCCATCCA +
Preference number: 6 (lower is better)
Translates to: PGHEAIEAVSFPRHD*LAEVKPPHWGGIHP
Trigger: TGGATGGATTCCACCCCAATGAGGTGGCTTCACTTCTGCAAGCAAATCGTGTCTGGGAAAAGATACAGCTTCAATGGCCTCATGTCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 72 bp CAGAGTCTCTCCATCGCCACCTGGACTGAAGAGTTGTaGACTTCAGCCAGTTGCTCAATCACAGATACCAGT +
Preference number: 6 (lower is better)
Translates to: QSLSIATWTEEL*TSASCSITDTS
Trigger: ACTGGTATCTGTGATTGAGCAACTGGCTGAAGTTCACAACTCTTCAGTCCAGGTGGCGATGGAGAGACTCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021757.5
ENSMUST00000221982.2
CDS TCA 72 bp GGGTCTTGTTGGAAGACATCCAGCCGTTACAGGGATTaGGCTGCAGGCATCTTAGAAAGGAGAAGAACTGTG +
Preference number: 6 (lower is better)
Translates to: GSCWKTSSRYRD*AAGILERRRTV
Trigger: CACAGTTCTTCTCCTTTCTAAGATGCCTGCAGCTCAATCCCTGTAACGGCTGGATGTCTTCCAACAAGACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 72 bp CTGTATCTTTTCCCAGACACGATTTGCTTGCAGAAGTaGAGCCACCTCATTGGGGTGGAATCCATCCACAGG +
Preference number: 6 (lower is better)
Translates to: LYLFPDTICLQK*SHLIGVESIHR
Trigger: CCTGTGGATGGATTCCACCCCAATGAGGTGGCTTCACTTCTGCAAGCAAATCGTGTCTGGGAAAAGATACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 72 bp GGGGTGGAATCCATCCACAGGTTCAATAAGCTGCCATaGCTGTCCACCTCTTTTCTGCCAGTCCTCTATTAT +
Preference number: 6 (lower is better)
Translates to: GVESIHRFNKLP*LSTSFLPVLYY
Trigger: ATAATAGAGGACTGGCAGAAAAGAGGTGGACAGCCATGGCAGCTTATTGAACCTGTGGATGGATTCCACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 72 bp CAGACACGATTTGCTTGCAGAAGTGAAGCCACCTCATaGGGGTGGAATCCATCCACAGGTTCAATAAGCTGC +
Preference number: 6 (lower is better)
Translates to: QTRFACRSEATS*GWNPSTGSISC
Trigger: GCAGCTTATTGAACCTGTGGATGGATTCCACCCCAATGAGGTGGCTTCACTTCTGCAAGCAAATCGTGTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 72 bp GAGGCCATTGAAGCTGTATCTTTTCCCAGACACGATTaGCTTGCAGAAGTGAAGCCACCTCATTGGGGTGGA +
Preference number: 6 (lower is better)
Translates to: EAIEAVSFPRHD*LAEVKPPHWGG
Trigger: TCCACCCCAATGAGGTGGCTTCACTTCTGCAAGCAAATCGTGTCTGGGAAAAGATACAGCTTCAATGGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 90 bp ATCTTTTCCCAGACACGATTTGCTTGCAGAAGTGAAGCCACCTCATaGGGGTGGAATCCATCCACAGGTTCAATAAGCTGCCATGGCTGT +
Preference number: 6 (lower is better)
Translates to: IFSQTRFACRSEATS*GWNPSTGSISCHGC
Trigger: ACAGCCATGGCAGCTTATTGAACCTGTGGATGGATTCCACCCCAATGAGGTGGCTTCACTTCTGCAAGCAAATCGTGTCTGGGAAAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 72 bp CATCTTTCGGATCAATACCCCAGATGCCATTACAGTTaGAGTCCTGATGGATATCCCAGTTGTCTGGCCTTC +
Preference number: 6 (lower is better)
Translates to: HLSDQYPRCHYS*SPDGYPSCLAF
Trigger: GAAGGCCAGACAACTGGGATATCCATCAGGACTCCAACTGTAATGGCATCTGGGGTATTGATCCGAAAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 72 bp AGGGTCTTGTTGGAAGACATCCAGCCGTTACAGGGATaGAGCTGCAGGCATCTTAGAAAGGAGAAGAACTGT +
Preference number: 6 (lower is better)
Translates to: RVLLEDIQPLQG*SCRHLRKEKNC
Trigger: ACAGTTCTTCTCCTTTCTAAGATGCCTGCAGCTCAATCCCTGTAACGGCTGGATGTCTTCCAACAAGACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 72 bp AAGCCGTATAAAATAACGTGGCTGCCATTGGGCAGGTaGGAATTTAGATGTGTCAGAGTCTGCATGACGTTG +
Preference number: 6 (lower is better)
Translates to: KPYKITWLPLGR*EFRCVRVCMTL
Trigger: CAACGTCATGCAGACTCTGACACATCTAAATTCTCACCTGCCCAATGGCAGCCACGTTATTTTATACGGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 72 bp TTGGTCTCCAAACACCTCTTCAATCTGAGAGTTGAATaGATTCTCCTTTCCCAGGACATGAGGCCATTGAAG +
Preference number: 6 (lower is better)
Translates to: LVSKHLFNLRVE*ILLSQDMRPLK
Trigger: CTTCAATGGCCTCATGTCCTGGGAAAGGAGAATCCATTCAACTCTCAGATTGAAGAGGTGTTTGGAGACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CAA 72 bp GTTGAATGGATTCTCCTTTCCCAGGACATGAGGCCATaGAAGCTGTATCTTTTCCCAGACACGATTTGCTTG +
Preference number: 6 (lower is better)
Translates to: VEWILLSQDMRP*KLYLFPDTICL
Trigger: CAAGCAAATCGTGTCTGGGAAAAGATACAGCTTCAATGGCCTCATGTCCTGGGAAAGGAGAATCCATTCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 72 bp AACGATGGTAAATGGATTTTTCTTCAATTCCACTCGTaGAGTCCAGAAATCCAGTTACACCAGAGAGTTGGG +
Preference number: 6 (lower is better)
Translates to: NDGKWIFLQFHS*SPEIQLHQRVG
Trigger: CCCAACTCTCTGGTGTAACTGGATTTCTGGACTCCACGAGTGGAATTGAAGAAAAATCCATTTACCATCGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS CCA 72 bp TGTCAGCTTTCGAATTACAAACATCGTTTCCAATCATaGCATAAAGGACAATGGCTGGATGGTCTGATGCCT +
Preference number: 6 (lower is better)
Translates to: CQLSNYKHRFQS*HKGQWLDGLMP
Trigger: AGGCATCAGACCATCCAGCCATTGTCCTTTATGCCATGATTGGAAACGATGTTTGTAATTCGAAAGCTGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5
CDS TCA 72 bp TCCAATCATGGCATAAAGGACAATGGCTGGATGGTCTaGTGCCTGGTTCCTAGACAAGCTTTCAATAAAATT +
Preference number: 6 (lower is better)
Translates to: SNHGIKDNGWMV*CLVPRQAFNKI
Trigger: AATTTTATTGAAAGCTTGTCTAGGAACCAGGCATCAGACCATCCAGCCATTGTCCTTTATGCCATGATTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021757.5