RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANXA7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021814

Ensembl transcript IDs: ENSMUST00000065504.17, ENSMUST00000100844.6, ENSMUST00000224975.2, ENSMUST00000225132.2, ENSMUST00000225941.2

Found 227 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTaGCACCAGCTAGCCTTGGGAGGCAGAGGGGTTTCAATCTTGCTT +
Preference number: 1 (lower is better)
Translates to: STRHSHHTVGFITNS*HQLALGGRGVSILL
Trigger: AAGCAAGATTGAAACCCCTCTGCCTCCCAAGGCTAGCTGGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR TCA 90 bp ACCAGGAAACTTCAGCCATCGACCCGAGTTACTGTGGCTTATTCCTaGGCTGAAAATCACACTCTGCAATCAACCAGAACAGCGTGTTTT +
Preference number: 1 (lower is better)
Translates to: TRKLQPSTRVTVAYS*AENHTLQSTRTACF
Trigger: AAAACACGCTGTTCTGGTTGATTGCAGAGTGTGATTTTCAGCTCAGGAATAAGCCACAGTAACTCGGGTCGATGGCTGAAGTTTCCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR TCA 90 bp GGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTACCCAGCACACCCCCTaGCAGTCTTCAGTAGAAAAC +
Preference number: 2 (lower is better)
Translates to: GSFLCFQLSSCCLRSILVTQHTP*QSSVEN
Trigger: GTTTTCTACTGAAGACTGTCAGGGGGTGTGCTGGGT...AACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp GTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCGGCAGTAACAACATGTaGAAACCCAGCACACCCCCT +
Preference number: 2 (lower is better)
Translates to: VPQGTPTTQWDSLLTAATGSNNM*KPSTPP
Trigger: AGGGGGTGTGCTGGGTTTGCACATGTTGTTACTGCC...GGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR CCA 90 bp GAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGACTGTCAGAGCTGTGTaGTGTTCCACAAGGCACTCC +
Preference number: 2 (lower is better)
Translates to: EGSFLCFQLSSCCLRSILTVRAV*CSTRHS
Trigger: GGAGTGCCTTGTGGAACACCACACAGCTCTGACAGT...CAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR CCA 90 bp GAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGAGGTGGTATCTGACATaGCTGCATGCAGGTCTCATT +
Preference number: 2 (lower is better)
Translates to: EGSFLCFQLSSCCLRSILRWYLT*LHAGLI
Trigger: AATGAGACCTGCATGCAGCCATGTCAGATACCACCT...CAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATTTAGAAGGCCAGCCTTaGACAGGACGTCACTGTCAG +
Preference number: 2 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHLEGQP*TGRHCQ
Trigger: CTGACAGTGACGTCCTGTGCAAGGCTGGCCTTCTAA...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR CCA 90 bp TTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTCATCTGGGGTCTCAGTaGCTTAGAAGGCCAGCCTTG +
Preference number: 2 (lower is better)
Translates to: LGFPTPSPSLCEKNRHASHLGSQ*LRRPAL
Trigger: CAAGGCTGGCCTTCTAAGCCACTGAGACCCCAGATG...ACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp GAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGCTGAAAATCACACTCTaGAATCAACCAGAACAGCGT +
Preference number: 2 (lower is better)
Translates to: EGSFLCFQLSSCCLRSILLKITL*NQPEQR
Trigger: ACGCTGTTCTGGTTGATTGCAGAGTGTGATTTTCAG...CAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR TCA 90 bp TCCATTTTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATACCCAGCACACCCCCTaGCAGTCTTCAGTAGAAAAC +
Preference number: 2 (lower is better)
Translates to: SILGFPTPSPSLCEKNRHTQHTP*QSSVEN
Trigger: GTTTTCTACTGAAGACTGTCAGGGGGTGTGCTGGGT...ATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAAAATGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR TCA 90 bp GGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTTCCTACACTACTAGCTaGGAGTTTTATTCCACTTGT +
Preference number: 2 (lower is better)
Translates to: GSFLCFQLSSCCLRSILVSYTTS*EFYSTC
Trigger: ACAAGTGGAATAAAACTCTCAGCTAGTAGTGTAGGA...AACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATTCTGACATGGCTGCATaGAGGTCTCATTGCATGGAA +
Preference number: 2 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHSDMAA*RSHCME
Trigger: TTCCATGCAATGAGACCTGCATGCAGCCATGTCAGA...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCATTCCAGTTAAGCTCCTaGTGCCTCAGGAGCATTCTG +
Preference number: 2 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQAFQLSS*CLRSIL
Trigger: CAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAA...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
3UTR-3UTR CCA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATACTACTCTGGTCAGGTaGTATCTGACATGGCTGCAT +
Preference number: 2 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHTTLVR*YLTWLH
Trigger: ATGCAGCCATGTCAGATACCACCTGACCAGAGTAGT...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR TCA 90 bp TGTGCAAACCCAGCACACCCCCTGACAGTCTTCAGTAGAAAACTACTCTGGTCATGGAAGGATAGGTCCTaGAGAGCTTCATTCCTTAAA +
Preference number: 2 (lower is better)
Translates to: CANPAHPLTVFSRKLLWSWKDRS*RASFLK
Trigger: TTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCA...TGACCAGAGTAGTTTTCTACTGAAGACTGTCAGGGGGTGTGCTGGGTTTGCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCATCTGACATGGCTGCATaGAGGTCTCATTGCATGGAA +
Preference number: 2 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQASDMAA*RSHCME
Trigger: TTCCATGCAATGAGACCTGCATGCAGCCATGTCAGA...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTGGCAGTAACAACATGTaGAAACCCAGCACACCCCCT +
Preference number: 2 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTGSNNM*KPSTPP
Trigger: AGGGGGTGTGCTGGGTTTGCACATGTTGTTACTGCC...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp TCCATTTTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATTCTGACATGGCTGCATaGAGGTCTCATTGCATGGAA +
Preference number: 2 (lower is better)
Translates to: SILGFPTPSPSLCEKNRHSDMAA*RSHCME
Trigger: TTCCATGCAATGAGACCTGCATGCAGCCATGTCAGA...ATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAAAATGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCATTCCAGTTAAGCTCCTaGTGCCTCAGGAGCATTCTG +
Preference number: 2 (lower is better)
Translates to: QHSHNSSQASVASILGFPFQLSS*CLRSIL
Trigger: CAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAA...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
3UTR-3UTR TCA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCATGGAAGGATAGGTCCTaGAGAGCTTCATTCCTTAAA +
Preference number: 2 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQAWKDRS*RASFLK
Trigger: TTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCA...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR CCA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTAGGTGGTATCTGACATaGCTGCATGCAGGTCTCATT +
Preference number: 2 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTRWYLT*LHAGLI
Trigger: AATGAGACCTGCATGCAGCCATGTCAGATACCACCT...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR CCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCAACTACTCTGGTCAGGTaGTATCTGACATGGCTGCAT +
Preference number: 2 (lower is better)
Translates to: QHSHNSSQASVASILGFPTTLVR*YLTWLH
Trigger: ATGCAGCCATGTCAGATACCACCTGACCAGAGTAGT...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR CCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCATTTTGCCCTTATCCATaGGAATTGGGTAGAGACACA +
Preference number: 2 (lower is better)
Translates to: QHSHNSSQASVASILGFPFCPYP*ELGRDT
Trigger: TGTGTCTCTACCCAATTCCCATGGATAAGGGCAAAA...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
3UTR-3UTR CCA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATCAATTAAATGTAGAATaGTGCTTGCTTTTGCCCTTA +
Preference number: 2 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHQLNVE*CLLLPL
Trigger: TAAGGGCAAAAGCAAGCACCATTCTACATTTAATTG...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
3UTR-3UTR GCA 90 bp GAGGGGTTTCAATCTTGCTTGCATAGACTACGTTATTTAGGTGAACACTACATGCTGAAAATCACACTCTaGAATCAACCAGAACAGCGT +
Preference number: 2 (lower is better)
Translates to: EGFQSCLHRLRYLGEHYMLKITL*NQPEQR
Trigger: ACGCTGTTCTGGTTGATTGCAGAGTGTGATTTTCAG...CATGTAGTGTTCACCTAAATAACGTAGTCTATGCAAGCAAGATTGAAACCCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR TCA 90 bp GAGGGGTTTCAATCTTGCTTGCATAGACTACGTTATTTAGGTGAACACTACATGTCCTACACTACTAGCTaGGAGTTTTATTCCACTTGT +
Preference number: 2 (lower is better)
Translates to: EGFQSCLHRLRYLGEHYMSYTTS*EFYSTC
Trigger: ACAAGTGGAATAAAACTCTCAGCTAGTAGTGTAGGA...CATGTAGTGTTCACCTAAATAACGTAGTCTATGCAAGCAAGATTGAAACCCCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR GCA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTTTAAATGTAGAATGGTaGTTGCTTTTGCCCTTATCC +
Preference number: 2 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTLNVEW*LLLPLS
Trigger: GGATAAGGGCAAAAGCAAGCACCATTCTACATTTAA...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
3UTR-3UTR TCA 90 bp ACAGCGTGTTTTAACAAACTCCGTTCCCATCCTCTCATTCTTTTAACATTAAACTGGAAGGATAGGTCCTaGAGAGCTTCATTCCTTAAA +
Preference number: 2 (lower is better)
Translates to: TACFNKLRSHPLILLTLNWKDRS*RASFLK
Trigger: TTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCA...GTTTAATGTTAAAAGAATGAGAGGATGGGAACGGAGTTTGTTAAAACACGCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR CCA 72 bp GCCAGCCTTGCACAGGACGTCACTGTCAGAGCTGTGTaGTGTTCCACAAGGCACTCCCACCACACAGTGGGA +
Preference number: 3 (lower is better)
Translates to: ASLAQDVTVRAV*CSTRHSHHTVG
Trigger: TCCCACTGTGTGGTGGGAGTGCCTTGTGGAACACCACACAGCTCTGACAGTGACGTCCTGTGCAAGGCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR CAA 90 bp GGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTTGCCACCAGCTAGCCTaGGGAGGCAGAGGGGTTTCA +
Preference number: 3 (lower is better)
Translates to: GSFLCFQLSSCCLRSILVCHQLA*GGRGVS
Trigger: TGAAACCCCTCTGCCTCCCAAGGCTAGCTGGTGGCA...AACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR-3UTR CAA 90 bp TTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTTGCCACCAGCTAGCCTaGGGAGGCAGAGGGGTTTCA +
Preference number: 3 (lower is better)
Translates to: LGFPTPSPSLCEKNRHASCHQLA*GGRGVS
Trigger: TGAAACCCCTCTGCCTCCCAAGGCTAGCTGGTGGCA...ACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR TCA 72 bp GCCATCGACCCGAGTTACTGTGGCTTATTCCTGAGCTaGAAATCACACTCTGCAATCAACCAGAACAGCGTG +
Preference number: 3 (lower is better)
Translates to: AIDPSYCGLFLS*KSHSAINQNSV
Trigger: CACGCTGTTCTGGTTGATTGCAGAGTGTGATTTTCAGCTCAGGAATAAGCCACAGTAACTCGGGTCGATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR GCA 72 bp GGAGAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTaGTGCCTCAGGAGCATTCTGGTTACCATGATAATG +
Preference number: 3 (lower is better)
Translates to: GEGSFLCFQLSS*CLRSILVTMIM
Trigger: CATTATCATGGTAACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
3UTR TCA 72 bp CTGCATGCAGGTCTCATTGCATGGAAGGATAGGTCCTaGAGAGCTTCATTCCTTAAAGGGGAAAAGGACCCT +
Preference number: 3 (lower is better)
Translates to: LHAGLIAWKDRS*RASFLKGEKDP
Trigger: AGGGTCCTTTTCCCCTTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCATGCAATGAGACCTGCATGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR TCA 72 bp GTCTTCAGTAGAAAACTACTCTGGTCAGGTGGTATCTaGCATGGCTGCATGCAGGTCTCATTGCATGGAAGG +
Preference number: 3 (lower is better)
Translates to: VFSRKLLWSGGI*HGCMQVSLHGR
Trigger: CCTTCCATGCAATGAGACCTGCATGCAGCCATGTCAGATACCACCTGACCAGAGTAGTTTTCTACTGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR TCA 72 bp CTTCAGCCATCGACCCGAGTTACTGTGGCTTATTCCTaGGCTGAAAATCACACTCTGCAATCAACCAGAACA +
Preference number: 3 (lower is better)
Translates to: LQPSTRVTVAYS*AENHTLQSTRT
Trigger: TGTTCTGGTTGATTGCAGAGTGTGATTTTCAGCTCAGGAATAAGCCACAGTAACTCGGGTCGATGGCTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR TCA 72 bp GAACACTACATGGCCTGTCAGTCCTACACTACTAGCTaGGAGTTTTATTCCACTTGTACCAGGAAACTTCAG +
Preference number: 3 (lower is better)
Translates to: EHYMACQSYTTS*EFYSTCTRKLQ
Trigger: CTGAAGTTTCCTGGTACAAGTGGAATAAAACTCTCAGCTAGTAGTGTAGGACTGACAGGCCATGTAGTGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
3UTR GCA 72 bp TTACTGTGGCTTATTCCTGAGCTGAAAATCACACTCTaGAATCAACCAGAACAGCGTGTTTTAACAAACTCC +
Preference number: 3 (lower is better)
Translates to: LLWLIPELKITL*NQPEQRVLTNS
Trigger: GGAGTTTGTTAAAACACGCTGTTCTGGTTGATTGCAGAGTGTGATTTTCAGCTCAGGAATAAGCCACAGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GGTAGAGACACAGAAGTAATCAGGTTACTCATGGGCCTGGGCCGTGGATGGGGAGCCTGCTCCACCGGGTaGGGCCCCAAAGCCTTGGCC +
Preference number: 4 (lower is better)
Translates to: GRDTEVIRLLMGLGRGWGACSTG*GPKALA
Trigger: GGCCAAGGCTTTGGGGCCCCACCCGGTGGAGCAGGC...TCCCCATCCACGGCCCAGGCCCATGAGTAACCTGATTACTTCTGTGTCTCTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGCCTGCTCCACCGGGTaGGGCCCCAAAGCCTTGGCC +
Preference number: 4 (lower is better)
Translates to: EGSFLCFQLSSCCLRSILACSTG*GPKALA
Trigger: GGCCAAGGCTTTGGGGCCCCACCCGGTGGAGCAGGC...CAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp CAGGACGTCACTGTCAGAGCTGTGTGGTGTTCCACAAGGCACTCCCACCACACAAAGGCGGGTAGCCGGTaGGGGGATAGCCTGGGTATG +
Preference number: 4 (lower is better)
Translates to: QDVTVRAVWCSTRHSHHTKAGSR*GDSLGM
Trigger: CATACCCAGGCTATCCCCCCACCGGCTACCCGCCTT...TGTGTGGTGGGAGTGCCTTGTGGAACACCACACAGCTCTGACAGTGACGTCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp CAGGACGTCACTGTCAGAGCTGTGTGGTGTTCCACAAGGCACTCCCACCACACACCCACCACTTGGTGCTaGTGGGTAAGCACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QDVTVRAVWCSTRHSHHTPTTWC*WVSTSS
Trigger: GGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGG...TGTGTGGTGGGAGTGCCTTGTGGAACACCACACAGCTCTGACAGTGACGTCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp GAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGAGAAGGCAGGGCGGTTaGGGGCGCACTGCAAGATGG +
Preference number: 4 (lower is better)
Translates to: EGSFLCFQLSSCCLRSILRRQGG*GRTARW
Trigger: CCATCTTGCAGTGCGCCCTCAACCGCCCTGCCTTCT...CAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp GGAGAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTATAGCCAGAAAAGCCTaGTCCACCGGGTGGGGCCCC +
Preference number: 4 (lower is better)
Translates to: GEGSFLCFQLSSCCLRSIIARKA*STGWGP
Trigger: GGGGCCCCACCCGGTGGAGCAGGCTTTTCTGGCTAT...AATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp AGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTATAGCCAGAAAAGCCTaGTCCACCGGGTGGGGCCCC +
Preference number: 4 (lower is better)
Translates to: RQFPVLPVKLLLPQEHSGIARKA*STGWGP
Trigger: GGGGCCCCACCCGGTGGAGCAGGCTTTTCTGGCTAT...ACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GGAGAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTAAGGCGGGTAGCCGGTaGGGGGATAGCCTGGGTATG +
Preference number: 4 (lower is better)
Translates to: GEGSFLCFQLSSCCLRSIKAGSR*GDSLGM
Trigger: CATACCCAGGCTATCCCCCCACCGGCTACCCGCCTT...AATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp TCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCAGTGGATAACCTCCAGGTaGGGGGTAGCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: STRHSHHTVGFITNSCHQWITSR*GVASSS
Trigger: GGAGCTGGAGGCTACCCCGCACCTGGAGGTTATCCA...CTGGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTCCCACCACTTGGTGCTaGTGGGTAAGCACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: RQFPVLPVKLLLPQEHSGPTTWC*WVSTSS
Trigger: GGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGG...ACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCAGTCCTGGGCCATCTGGTaGTTCACGCTCTGCCTCTCG +
Preference number: 4 (lower is better)
Translates to: STRHSHHTVGFITNSCHQSWAIW*FTLCLS
Trigger: CGAGAGGCAGAGCGTGAACCACCAGATGGCCCAGGA...CTGGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp GGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTATAGTGGCCTTCAGCTaGGGGAAGCTCCTTGTGGCG +
Preference number: 4 (lower is better)
Translates to: GSFLCFQLSSCCLRSILVIVAFS*GKLLVA
Trigger: CGCCACAAGGAGCTTCCCTCAGCTGAAGGCCACTAT...AACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCGTAGCCTCCAGCTCCTaGATACCCACCACTTGGTGC +
Preference number: 4 (lower is better)
Translates to: VPQGTPTTQWDSLLTAATVASSS*IPTTWC
Trigger: GCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTAC...GGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GGTAGAGACACAGAAGTAATCAGGTTACTCATGGGCCTGGGCCGTGGATGGGGACTGTGCAGGTGGCTGTaGATAGCCAGAAAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: GRDTEVIRLLMGLGRGWGLCRWL*IARKAC
Trigger: GCAGGCTTTTCTGGCTATCCACAGCCACCTGCACAG...TCCCCATCCACGGCCCAGGCCCATGAGTAACCTGATTACTTCTGTGTCTCTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCACCTCCTCCCATTGGTaGAAAGCCACTAGGGTACGG +
Preference number: 4 (lower is better)
Translates to: VPQGTPTTQWDSLLTAATTSSHW*KATRVR
Trigger: CCGTACCCTAGTGGCTTTCCACCAATGGGAGGAGGT...GGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGGTAGCCTCCAGCTCCTaGATACCCACCACTTGGTGC +
Preference number: 4 (lower is better)
Translates to: FQHPLPVSVRKIGMQVAGVASSS*IPTTWC
Trigger: GCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTAC...CCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCCTGTGCAGGTGGCTGTaGATAGCCAGAAAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: VPQGTPTTQWDSLLTAATLCRWL*IARKAC
Trigger: GCAGGCTTTTCTGGCTATCCACAGCCACCTGCACAG...GGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATTGGATAACCTCCAGGTaGGGGGTAGCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHWITSR*GVASSS
Trigger: GGAGCTGGAGGCTACCCCGCACCTGGAGGTTATCCA...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp CAGGACGTCACTGTCAGAGCTGTGTGGTGTTCCACAAGGCACTCCCACCACACAACATCCACAATTGCTTaGTCGTCTGTCCCAAACCCT +
Preference number: 4 (lower is better)
Translates to: QDVTVRAVWCSTRHSHHTTSTIA*SSVPNP
Trigger: AGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGT...TGTGTGGTGGGAGTGCCTTGTGGAACACCACACAGCTCTGACAGTGACGTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCAAAGGCGGGTAGCCGGTaGGGGGATAGCCTGGGTATG +
Preference number: 4 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQAKAGSR*GDSLGM
Trigger: CATACCCAGGCTATCCCCCCACCGGCTACCCGCCTT...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TGTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACGGTACTGACCCGCAGTaGGGAAAGATGACTCCTGAC +
Preference number: 4 (lower is better)
Translates to: CSTRHSHHTVGFITNSCHGTDPQ*GKMTPD
Trigger: GTCAGGAGTCATCTTTCCCCACTGCGGGTCAGTACC...GTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GGAGAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTAGCACCTCCTCCCATTaGTGGAAAGCCACTAGGGTA +
Preference number: 4 (lower is better)
Translates to: GEGSFLCFQLSSCCLRSISTSSH*WKATRV
Trigger: TACCCTAGTGGCTTTCCACCAATGGGAGGAGGTGCT...AATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GAGGGGTTTCAATCTTGCTTGCATAGACTACGTTATTTAGGTGAACACTACATGGCCTGCTCCACCGGGTaGGGCCCCAAAGCCTTGGCC +
Preference number: 4 (lower is better)
Translates to: EGFQSCLHRLRYLGEHYMACSTG*GPKALA
Trigger: GGCCAAGGCTTTGGGGCCCCACCCGGTGGAGCAGGC...CATGTAGTGTTCACCTAAATAACGTAGTCTATGCAAGCAAGATTGAAACCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TGTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACTACTGGAACCTGGGCTaGTCCGCCACCATAAGACTG +
Preference number: 4 (lower is better)
Translates to: CSTRHSHHTVGFITNSCHYWNLG*SATIRL
Trigger: CAGTCTTATGGTGGCGGACCAGCCCAGGTTCCAGTA...GTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATTCCTGGGCCATCTGGTaGTTCACGCTCTGCCTCTCG +
Preference number: 4 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHSWAIW*FTLCLS
Trigger: CGAGAGGCAGAGCGTGAACCACCAGATGGCCCAGGA...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp CAGGACGTCACTGTCAGAGCTGTGTGGTGTTCCACAAGGCACTCCCACCACACAGGGCGCACTGCAAGATaGTCTTCAAACCACTTTCAA +
Preference number: 4 (lower is better)
Translates to: QDVTVRAVWCSTRHSHHTGRTAR*SSNHFQ
Trigger: TTGAAAGTGGTTTGAAGACCATCTTGCAGTGCGCCC...TGTGTGGTGGGAGTGCCTTGTGGAACACCACACAGCTCTGACAGTGACGTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp TTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTTGGATAACCTCCAGGTaGGGGGTAGCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LGFPTPSPSLCEKNRHASWITSR*GVASSS
Trigger: GGAGCTGGAGGCTACCCCGCACCTGGAGGTTATCCA...ACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TCCATTTTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATATAGCCCCCAGGGGCTaGATAACCTCCAGGTGCGGG +
Preference number: 4 (lower is better)
Translates to: SILGFPTPSPSLCEKNRHIAPRG*ITSRCG
Trigger: CCCGCACCTGGAGGTTATCCAGCCCCTGGGGGCTAT...ATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAAAATGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCATCCTGGGCCATCTGGTaGTTCACGCTCTGCCTCTCG +
Preference number: 4 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQASWAIW*FTLCLS
Trigger: CGAGAGGCAGAGCGTGAACCACCAGATGGCCCAGGA...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp TGTGCAAACCCAGCACACCCCCTGACAGTCTTCAGTAGAAAACTACTCTGGTCAGGGAAAGATGACTCCTaGCCTGCAGGAGGATATCCA +
Preference number: 4 (lower is better)
Translates to: CANPAHPLTVFSRKLLWSGKDDS*PAGGYP
Trigger: TGGATATCCTCCTGCAGGTCAGGAGTCATCTTTCCC...TGACCAGAGTAGTTTTCTACTGAAGACTGTCAGGGGGTGTGCTGGGTTTGCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp AGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTATGTCCCGAGGTATCTaGCCTAATGTCCTTCTCAAG +
Preference number: 4 (lower is better)
Translates to: RQFPVLPVKLLLPQEHSGMSRGI*PNVLLK
Trigger: CTTGAGAAGGACATTAGGTCAGATACCTCGGGACAT...ACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp CCTAACATTAGAATTAAGGCAGTAACAACATGTGCAAACCCAGCACACCCCCTGATAGTGGCCTTCAGCTaGGGGAAGCTCCTTGTGGCG +
Preference number: 4 (lower is better)
Translates to: PNIRIKAVTTCANPAHPLIVAFS*GKLLVA
Trigger: CGCCACAAGGAGCTTCCCTCAGCTGAAGGCCACTAT...CAGGGGGTGTGCTGGGTTTGCACATGTTGTTACTGCCTTAATTCTAATGTTAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp TTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTATAGTGGCCTTCAGCTaGGGGAAGCTCCTTGTGGCG +
Preference number: 4 (lower is better)
Translates to: LGFPTPSPSLCEKNRHASIVAFS*GKLLVA
Trigger: CGCCACAAGGAGCTTCCCTCAGCTGAAGGCCACTAT...ACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp AGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTGCTGCTTTGATTTGTTaGCTCTGGTCATTGGAACGG +
Preference number: 4 (lower is better)
Translates to: RQFPVLPVKLLLPQEHSGAALIC*LWSLER
Trigger: CCGTTCCAATGACCAGAGGCAACAAATCAAAGCAGC...ACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CCA 90 bp CAGGTCTCATTGCATGGAAGGATAGGTCCTGAAGAGCTTCATTCCTTAAAGGGGGGTACTGACCCGCAGTaGGGAAAGATGACTCCTGAC +
Preference number: 4 (lower is better)
Translates to: QVSLHGRIGPEELHSLKGGTDPQ*GKMTPD
Trigger: GTCAGGAGTCATCTTTCCCCACTGCGGGTCAGTACC...CCCCTTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCATGCAATGAGACCTG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp CCTAACATTAGAATTAAGGCAGTAACAACATGTGCAAACCCAGCACACCCCCTGGTAGCCTCCAGCTCCTaGATACCCACCACTTGGTGC +
Preference number: 4 (lower is better)
Translates to: PNIRIKAVTTCANPAHPLVASSS*IPTTWC
Trigger: GCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTAC...CAGGGGGTGTGCTGGGTTTGCACATGTTGTTACTGCCTTAATTCTAATGTTAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCAATAGCCCCCAGGGGCTaGATAACCTCCAGGTGCGGG +
Preference number: 4 (lower is better)
Translates to: QHSHNSSQASVASILGFPIAPRG*ITSRCG
Trigger: CCCGCACCTGGAGGTTATCCAGCCCCTGGGGGCTAT...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTATAGCCCCCAGGGGCTaGATAACCTCCAGGTGCGGG +
Preference number: 4 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTIAPRG*ITSRCG
Trigger: CCCGCACCTGGAGGTTATCCAGCCCCTGGGGGCTAT...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCATCAAAGTTGGAGGCTaGGAGGATTGTTCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: VPQGTPTTQWDSLLTAATIKVGG*EDCSLG
Trigger: ACCCAAGGAACAATCCTCCCAGCCTCCAACTTTGAT...GGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCTGCCAGCGCCTTTCATaGAATAGTAGAGTCGTTCAG +
Preference number: 4 (lower is better)
Translates to: VPQGTPTTQWDSLLTAATCQRLS*NSRVVQ
Trigger: CTGAACGACTCTACTATTCCATGAAAGGCGCTGGCA...GGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp GGAGAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTATCAATACACGTTCTTaGGTTCCTGCTCCCTGCATT +
Preference number: 4 (lower is better)
Translates to: GEGSFLCFQLSSCCLRSIINTRS*VPAPCI
Trigger: AATGCAGGGAGCAGGAACTCAAGAACGTGTATTGAT...AATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp AATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTAGAAGGCAGGGCGGTTaGGGGCGCACTGCAAGATGG +
Preference number: 4 (lower is better)
Translates to: NKLNTEDLGSDTSTHTIVRRQGG*GRTARW
Trigger: CCATCTTGCAGTGCGCCCTCAACCGCCCTGCCTTCT...AACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp GGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTCACAACATCCACAATTaGTTGCTCGTCTGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: GSFLCFQLSSCCLRSILVHNIHN*LLVCPK
Trigger: TTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTG...AACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp TGTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACGCTGCTTTGATTTGTTaGCTCTGGTCATTGGAACGG +
Preference number: 4 (lower is better)
Translates to: CSTRHSHHTVGFITNSCHAALIC*LWSLER
Trigger: CCGTTCCAATGACCAGAGGCAACAAATCAAAGCAGC...GTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp CCTAACATTAGAATTAAGGCAGTAACAACATGTGCAAACCCAGCACACCCCCTGACCTCCTCCCATTGGTaGAAAGCCACTAGGGTACGG +
Preference number: 4 (lower is better)
Translates to: PNIRIKAVTTCANPAHPLTSSHW*KATRVR
Trigger: CCGTACCCTAGTGGCTTTCCACCAATGGGAGGAGGT...CAGGGGGTGTGCTGGGTTTGCACATGTTGTTACTGCCTTAATTCTAATGTTAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTATAAGACTGTGCAGGTaGCTGTGGATAGCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: RQFPVLPVKLLLPQEHSGIRLCR*LWIARK
Trigger: TTTTCTGGCTATCCACAGCCACCTGCACAGTCTTAT...ACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp CCTAACATTAGAATTAAGGCAGTAACAACATGTGCAAACCCAGCACACCCCCTGTCGTCACGGTTTCCCTaGCACATGGACACGAGGAGA +
Preference number: 4 (lower is better)
Translates to: PNIRIKAVTTCANPAHPLSSRFP*HMDTRR
Trigger: TCTCCTCGTGTCCATGTGCCAGGGAAACCGTGACGA...CAGGGGGTGTGCTGGGTTTGCACATGTTGTTACTGCCTTAATTCTAATGTTAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCATCGTCACGGTTTCCCTaGCACATGGACACGAGGAGA +
Preference number: 4 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQASSRFP*HMDTRR
Trigger: TCTCCTCGTGTCCATGTGCCAGGGAAACCGTGACGA...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp TCCATTTTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATTGTCCTCCAGGGTACTaGGATGGCATCTGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: SILGFPTPSPSLCEKNRHCPPGY*DGICPP
Trigger: TGGAGGACAGATGCCATCTCAGTACCCTGGAGGACA...ATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAAAATGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp CAGGACGTCACTGTCAGAGCTGTGTGGTGTTCCACAAGGCACTCCCACCACACATTTGCGGAGAATTTCTaGATCTCTCATAGCATCAAA +
Preference number: 4 (lower is better)
Translates to: QDVTVRAVWCSTRHSHHTFAENF*ISHSIK
Trigger: TTTGATGCTATGAGAGATGCAGAAATTCTCCGCAAA...TGTGTGGTGGGAGTGCCTTGTGGAACACCACACAGCTCTGACAGTGACGTCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp CCTAACATTAGAATTAAGGCAGTAACAACATGTGCAAACCCAGCACACCCCCTGACGTTCTTGAGTTCCTaGTCCCTGCATTGCCTTCCG +
Preference number: 4 (lower is better)
Translates to: PNIRIKAVTTCANPAHPLTFLSS*SLHCLP
Trigger: CGGAAGGCAATGCAGGGAGCAGGAACTCAAGAACGT...CAGGGGGTGTGCTGGGTTTGCACATGTTGTTACTGCCTTAATTCTAATGTTAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp GGAGAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTTCGAAGCGGGATCACTaGTATAATCCAAAGAAACAG +
Preference number: 4 (lower is better)
Translates to: GEGSFLCFQLSSCCLRSISKRDH*YNPKKQ
Trigger: CTGTTTCTTTGGATTATAGCAGTGATCCCGCTTCGA...AATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100844.6
CDS-3UTR CCA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCAAGCACCTCCTCCCATTaGTGGAAAGCCACTAGGGTA +
Preference number: 4 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQASTSSH*WKATRV
Trigger: TACCCTAGTGGCTTTCCACCAATGGGAGGAGGTGCT...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTTGATTTGTTGCCTCTaGTCATTGGAACGGTTAGAC +
Preference number: 4 (lower is better)
Translates to: RQFPVLPVKLLLPQEHSGLICCL*SLERLD
Trigger: GTCTAACCGTTCCAATGACCAGAGGCAACAAATCAA...ACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CCA 90 bp TTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTACCATGGGCGCACTGCAAGATaGTCTTCAAACCACTTTCAA +
Preference number: 4 (lower is better)
Translates to: FPVLPVKLLLPQEHSGYHGRTAR*SSNHFQ
Trigger: TTGAAAGTGGTTTGAAGACCATCTTGCAGTGCGCCC...ATGGTAACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTTGTCCTCCAGGGTACTaGGATGGCATCTGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTCPPGY*DGICPP
Trigger: TGGAGGACAGATGCCATCTCAGTACCCTGGAGGACA...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATAGAAGGCAGGGCGGTTaGGGGCGCACTGCAAGATGG +
Preference number: 4 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHRRQGG*GRTARW
Trigger: CCATCTTGCAGTGCGCCCTCAACCGCCCTGCCTTCT...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp GGTAGAGACACAGAAGTAATCAGGTTACTCATGGGCCTGGGCCGTGGATGGGGATCTGATACATCTGGGTaGACATCTGTTTTATCTGAA +
Preference number: 4 (lower is better)
Translates to: GRDTEVIRLLMGLGRGWGSDTSG*TSVLSE
Trigger: TTCAGATAAAACAGATGTTCACCCAGATGTATCAGA...TCCCCATCCACGGCCCAGGCCCATGAGTAACCTGATTACTTCTGTGTCTCTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp CAGGTCTCATTGCATGGAAGGATAGGTCCTGAAGAGCTTCATTCCTTAAAGGGGACATCCACAATTGCTTaGTCGTCTGTCCCAAACCCT +
Preference number: 4 (lower is better)
Translates to: QVSLHGRIGPEELHSLKGTSTIA*SSVPNP
Trigger: AGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGT...CCCCTTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCATGCAATGAGACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp TGTGCAAACCCAGCACACCCCCTGACAGTCTTCAGTAGAAAACTACTCTGGTCACACAACATCCACAATTaGTTGCTCGTCTGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: CANPAHPLTVFSRKLLWSHNIHN*LLVCPK
Trigger: TTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTG...TGACCAGAGTAGTTTTCTACTGAAGACTGTCAGGGGGTGTGCTGGGTTTGCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp GGAGAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCATGGTCTTAAAAGCTaGTTTGATTTGTTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: GEGSFLCFQLSSCCLRSIHGLKS*FDLLPL
Trigger: CAGAGGCAACAAATCAAAGCAGCTTTTAAGACCATG...AATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp TCCATTTTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATCGGTTGAGGGCGCACTaGAAGATGGTCTTCAAACCA +
Preference number: 4 (lower is better)
Translates to: SILGFPTPSPSLCEKNRHRLRAH*KMVFKP
Trigger: TGGTTTGAAGACCATCTTGCAGTGCGCCCTCAACCG...ATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAAAATGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTACCTCCTCCCATTGGTaGAAAGCCACTAGGGTACGG +
Preference number: 4 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTTSSHW*KATRVR
Trigger: CCGTACCCTAGTGGCTTTCCACCAATGGGAGGAGGT...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTACCATATAAGACTGTGCAGGTaGCTGTGGATAGCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: FPVLPVKLLLPQEHSGYHIRLCR*LWIARK
Trigger: TTTTCTGGCTATCCACAGCCACCTGCACAGTCTTAT...ATGGTAACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp CAGGTCTCATTGCATGGAAGGATAGGTCCTGAAGAGCTTCATTCCTTAAAGGGGATCAAAGTTGGAGGCTaGGAGGATTGTTCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: QVSLHGRIGPEELHSLKGIKVGG*EDCSLG
Trigger: ACCCAAGGAACAATCCTCCCAGCCTCCAACTTTGAT...CCCCTTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCATGCAATGAGACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TGTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACTTGATTTGTTGCCTCTaGTCATTGGAACGGTTAGAC +
Preference number: 4 (lower is better)
Translates to: CSTRHSHHTVGFITNSCHLICCL*SLERLD
Trigger: GTCTAACCGTTCCAATGACCAGAGGCAACAAATCAA...GTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACATCGTCACGGTTTCCCTaGCACATGGACACGAGGAGA +
Preference number: 4 (lower is better)
Translates to: YSNKLNTEDLGSDTSTHTSSRFP*HMDTRR
Trigger: TCTCCTCGTGTCCATGTGCCAGGGAAACCGTGACGA...TGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCAGGGAAAGATGACTCCTaGCCTGCAGGAGGATATCCA +
Preference number: 4 (lower is better)
Translates to: QHSHNSSQASVASILGFPGKDDS*PAGGYP
Trigger: TGGATATCCTCCTGCAGGTCAGGAGTCATCTTTCCC...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATATCAATACACGTTCTTaGGTTCCTGCTCCCTGCATT +
Preference number: 4 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHINTRS*VPAPCI
Trigger: AATGCAGGGAGCAGGAACTCAAGAACGTGTATTGAT...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp TTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTATGTCCCGAGGTATCTaGCCTAATGTCCTTCTCAAG +
Preference number: 4 (lower is better)
Translates to: LGFPTPSPSLCEKNRHASMSRGI*PNVLLK
Trigger: CTTGAGAAGGACATTAGGTCAGATACCTCGGGACAT...ACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCAGCTGCTTTGATTTGTTaGCTCTGGTCATTGGAACGG +
Preference number: 4 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQAAALIC*LWSLER
Trigger: CCGTTCCAATGACCAGAGGCAACAAATCAAAGCAGC...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp TTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGCTGCTTTGATTTGTTaGCTCTGGTCATTGGAACGG +
Preference number: 4 (lower is better)
Translates to: LGFPTPSPSLCEKNRHASAALIC*LWSLER
Trigger: CCGTTCCAATGACCAGAGGCAACAAATCAAAGCAGC...ACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCAACGTTCTTGAGTTCCTaGTCCCTGCATTGCCTTCCG +
Preference number: 4 (lower is better)
Translates to: QHSHNSSQASVASILGFPTFLSS*SLHCLP
Trigger: CGGAAGGCAATGCAGGGAGCAGGAACTCAAGAACGT...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCACGGTTGAGGGCGCACTaGAAGATGGTCTTCAAACCA +
Preference number: 4 (lower is better)
Translates to: QHSHNSSQASVASILGFPRLRAH*KMVFKP
Trigger: TGGTTTGAAGACCATCTTGCAGTGCGCCCTCAACCG...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCAAGCACCTCCTCCCATTaGTGGAAAGCCACTAGGGTA +
Preference number: 4 (lower is better)
Translates to: QHSHNSSQASVASILGFPSTSSH*WKATRV
Trigger: TACCCTAGTGGCTTTCCACCAATGGGAGGAGGTGCT...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATCCCACCACTTGGTGCTaGTGGGTAAGCACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHPTTWC*WVSTSS
Trigger: GGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGG...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATATAAGACTGTGCAGGTaGCTGTGGATAGCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHIRLCR*LWIARK
Trigger: TTTTCTGGCTATCCACAGCCACCTGCACAGTCTTAT...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp TGTGCAAACCCAGCACACCCCCTGACAGTCTTCAGTAGAAAACTACTCTGGTCATTGATTTGTTGCCTCTaGTCATTGGAACGGTTAGAC +
Preference number: 4 (lower is better)
Translates to: CANPAHPLTVFSRKLLWSLICCL*SLERLD
Trigger: GTCTAACCGTTCCAATGACCAGAGGCAACAAATCAA...TGACCAGAGTAGTTTTCTACTGAAGACTGTCAGGGGGTGTGCTGGGTTTGCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp AATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTGGGAAAGATGACTCCTaGCCTGCAGGAGGATATCCA +
Preference number: 4 (lower is better)
Translates to: NKLNTEDLGSDTSTHTIVGKDDS*PAGGYP
Trigger: TGGATATCCTCCTGCAGGTCAGGAGTCATCTTTCCC...AACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp TTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTCTGATACATCTGGGTaGACATCTGTTTTATCTGAA +
Preference number: 4 (lower is better)
Translates to: FQHPLPVSVRKIGMQVAGSDTSG*TSVLSE
Trigger: TTCAGATAAAACAGATGTTCACCCAGATGTATCAGA...CCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp GAGGGGTTTCAATCTTGCTTGCATAGACTACGTTATTTAGGTGAACACTACATGACGTTCTTGAGTTCCTaGTCCCTGCATTGCCTTCCG +
Preference number: 4 (lower is better)
Translates to: EGFQSCLHRLRYLGEHYMTFLSS*SLHCLP
Trigger: CGGAAGGCAATGCAGGGAGCAGGAACTCAAGAACGT...CATGTAGTGTTCACCTAAATAACGTAGTCTATGCAAGCAAGATTGAAACCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp TGTGCAAACCCAGCACACCCCCTGACAGTCTTCAGTAGAAAACTACTCTGGTCATCTGATACATCTGGGTaGACATCTGTTTTATCTGAA +
Preference number: 4 (lower is better)
Translates to: CANPAHPLTVFSRKLLWSSDTSG*TSVLSE
Trigger: TTCAGATAAAACAGATGTTCACCCAGATGTATCAGA...TGACCAGAGTAGTTTTCTACTGAAGACTGTCAGGGGGTGTGCTGGGTTTGCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCAACATCCACAATTGCTTaGTCGTCTGTCCCAAACCCT +
Preference number: 4 (lower is better)
Translates to: QHSHNSSQASVASILGFPTSTIA*SSVPNP
Trigger: AGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGT...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CCA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATTACTGGAACCTGGGCTaGTCCGCCACCATAAGACTG +
Preference number: 4 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHYWNLG*SATIRL
Trigger: CAGTCTTATGGTGGCGGACCAGCCCAGGTTCCAGTA...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTTGCCAGCGCCTTTCATaGAATAGTAGAGTCGTTCAG +
Preference number: 4 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTCQRLS*NSRVVQ
Trigger: CTGAACGACTCTACTATTCCATGAAAGGCGCTGGCA...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp GAGGGGTTTCAATCTTGCTTGCATAGACTACGTTATTTAGGTGAACACTACATGATGTCCCGAGGTATCTaGCCTAATGTCCTTCTCAAG +
Preference number: 4 (lower is better)
Translates to: EGFQSCLHRLRYLGEHYMMSRGI*PNVLLK
Trigger: CTTGAGAAGGACATTAGGTCAGATACCTCGGGACAT...CATGTAGTGTTCACCTAAATAACGTAGTCTATGCAAGCAAGATTGAAACCCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATCGGTTGAGGGCGCACTaGAAGATGGTCTTCAAACCA +
Preference number: 4 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHRLRAH*KMVFKP
Trigger: TGGTTTGAAGACCATCTTGCAGTGCGCCCTCAACCG...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp AATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTATCAAAGTTGGAGGCTaGGAGGATTGTTCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: NKLNTEDLGSDTSTHTIVIKVGG*EDCSLG
Trigger: ACCCAAGGAACAATCCTCCCAGCCTCCAACTTTGAT...AACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CCA 90 bp AATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTGGGCGCACTGCAAGATaGTCTTCAAACCACTTTCAA +
Preference number: 4 (lower is better)
Translates to: NKLNTEDLGSDTSTHTIVGRTAR*SSNHFQ
Trigger: TTGAAAGTGGTTTGAAGACCATCTTGCAGTGCGCCC...AACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CCA 90 bp GAGGGGTTTCAATCTTGCTTGCATAGACTACGTTATTTAGGTGAACACTACATGTGCCAGCGCCTTTCATaGAATAGTAGAGTCGTTCAG +
Preference number: 4 (lower is better)
Translates to: EGFQSCLHRLRYLGEHYMCQRLS*NSRVVQ
Trigger: CTGAACGACTCTACTATTCCATGAAAGGCGCTGGCA...CATGTAGTGTTCACCTAAATAACGTAGTCTATGCAAGCAAGATTGAAACCCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR TCA 90 bp AATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTATCAATACACGTTCTTaGGTTCCTGCTCCCTGCATT +
Preference number: 4 (lower is better)
Translates to: NKLNTEDLGSDTSTHTIVINTRS*VPAPCI
Trigger: AATGCAGGGAGCAGGAACTCAAGAACGTGTATTGAT...AACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCATTTGCGGAGAATTTCTaGATCTCTCATAGCATCAAA +
Preference number: 4 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQAFAENF*ISHSIK
Trigger: TTTGATGCTATGAGAGATGCAGAAATTCTCCGCAAA...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp GAGGGGTTTCAATCTTGCTTGCATAGACTACGTTATTTAGGTGAACACTACATGCACAACATCCACAATTaGTTGCTCGTCTGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: EGFQSCLHRLRYLGEHYMHNIHN*LLVCPK
Trigger: TTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTG...CATGTAGTGTTCACCTAAATAACGTAGTCTATGCAAGCAAGATTGAAACCCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR GCA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATACATCCACAATTGCTTaGTCGTCTGTCCCAAACCCT +
Preference number: 4 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHTSTIA*SSVPNP
Trigger: AGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGT...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCATGGTCTTAAAAGCTaGTTTGATTTGTTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTHGLKS*FDLLPL
Trigger: CAGAGGCAACAAATCAAAGCAGCTTTTAAGACCATG...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCACATGGTCTTAAAAGCTaGTTTGATTTGTTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: QHSHNSSQASVASILGFPHGLKS*FDLLPL
Trigger: CAGAGGCAACAAATCAAAGCAGCTTTTAAGACCATG...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCATTTGCGGAGAATTTCTaGATCTCTCATAGCATCAAA +
Preference number: 4 (lower is better)
Translates to: QHSHNSSQASVASILGFPFAENF*ISHSIK
Trigger: TTTGATGCTATGAGAGATGCAGAAATTCTCCGCAAA...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATCACAACATCCACAATTaGTTGCTCGTCTGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHHNIHN*LLVCPK
Trigger: TTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTG...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CCA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATTTGATTTGTTGCCTCTaGTCATTGGAACGGTTAGAC +
Preference number: 4 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHLICCL*SLERLD
Trigger: GTCTAACCGTTCCAATGACCAGAGGCAACAAATCAA...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR GCA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATCATGGTCTTAAAAGCTaGTTTGATTTGTTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHHGLKS*FDLLPL
Trigger: CAGAGGCAACAAATCAAAGCAGCTTTTAAGACCATG...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS CCA 90 bp CCCAGGGGCTGGATAACCTCCAGGTGCGGGGTAGCCTCCAGCTCCTaGATACCCACCACTTGGTGCTGGTGGGTAAGCACCTCCTCCCAT +
Preference number: 5 (lower is better)
Translates to: PRGWITSRCGVASSS*IPTTWCWWVSTSSH
Trigger: ATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCCGCACCTGGAGGTTATCCAGCCCCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 90 bp TGGTACTGGAACCTGGGCTGGTCCGCCACCATAAGACTGTGCAGGTaGCTGTGGATAGCCAGAAAAGCCTGCTCCACCGGGTGGGGCCCC +
Preference number: 5 (lower is better)
Translates to: WYWNLGWSATIRLCR*LWIARKACSTGWGP
Trigger: GGGGCCCCACCCGGTGGAGCAGGCTTTTCTGGCTATCCACAGCCACCTGCACAGTCTTATGGTGGCGGACCAGCCCAGGTTCCAGTACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS GCA 90 bp GCCACCTGGTACTGGAACCTGGGCTGGTCCGCCACCATAAGACTGTaGAGGTGGCTGTGGATAGCCAGAAAAGCCTGCTCCACCGGGTGG +
Preference number: 5 (lower is better)
Translates to: ATWYWNLGWSATIRL*RWLWIARKACSTGW
Trigger: CCACCCGGTGGAGCAGGCTTTTCTGGCTATCCACAGCCACCTGCACAGTCTTATGGTGGCGGACCAGCCCAGGTTCCAGTACCAGGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS GCA 90 bp TCCAGGTGCGGGGTAGCCTCCAGCTCCTGGATACCCACCACTTGGTaGTGGTGGGTAAGCACCTCCTCCCATTGGTGGAAAGCCACTAGG +
Preference number: 5 (lower is better)
Translates to: SRCGVASSSWIPTTW*WWVSTSSHWWKATR
Trigger: CCTAGTGGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCCGCACCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 90 bp TGCGGGGTAGCCTCCAGCTCCTGGATACCCACCACTTGGTGCTGGTaGGTAAGCACCTCCTCCCATTGGTGGAAAGCCACTAGGGTACGG +
Preference number: 5 (lower is better)
Translates to: CGVASSSWIPTTWCW*VSTSSHWWKATRVR
Trigger: CCGTACCCTAGTGGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCCGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 90 bp ACCTCCAGGTGCGGGGTAGCCTCCAGCTCCTGGATACCCACCACTTaGTGCTGGTGGGTAAGCACCTCCTCCCATTGGTGGAAAGCCACT +
Preference number: 5 (lower is better)
Translates to: TSRCGVASSSWIPTT*CWWVSTSSHWWKAT
Trigger: AGTGGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCCGCACCTGGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 90 bp AGGTGCGGGGTAGCCTCCAGCTCCTGGATACCCACCACTTGGTGCTaGTGGGTAAGCACCTCCTCCCATTGGTGGAAAGCCACTAGGGTA +
Preference number: 5 (lower is better)
Translates to: RCGVASSSWIPTTWC*WVSTSSHWWKATRV
Trigger: TACCCTAGTGGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCCGCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 90 bp TGGATACCCACCACTTGGTGCTGGTGGGTAAGCACCTCCTCCCATTaGTGGAAAGCCACTAGGGTACGGGTACTGACCCGCAGTGGGGAA +
Preference number: 5 (lower is better)
Translates to: WIPTTWCWWVSTSSH*WKATRVRVLTRSGE
Trigger: TTCCCCACTGCGGGTCAGTACCCGTACCCTAGTGGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 90 bp ATACCCACCACTTGGTGCTGGTGGGTAAGCACCTCCTCCCATTGGTaGAAAGCCACTAGGGTACGGGTACTGACCCGCAGTGGGGAAAGA +
Preference number: 5 (lower is better)
Translates to: IPTTWCWWVSTSSHW*KATRVRVLTRSGER
Trigger: TCTTTCCCCACTGCGGGTCAGTACCCGTACCCTAGTGGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 90 bp TGGGCCATCTGGTGGTTCACGCTCTGCCTCTCGTCACGGTTTCCCTaGCACATGGACACGAGGAGACGTTCAAAATGTCCCGAGGTATCT +
Preference number: 5 (lower is better)
Translates to: WAIWWFTLCLSSRFP*HMDTRRRSKCPEVS
Trigger: AGATACCTCGGGACATTTTGAACGTCTCCTCGTGTCCATGTGCCAGGGAAACCGTGACGAGAGGCAGAGCGTGAACCACCAGATGGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp GAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGAAGAAGGCAGGGCGGTaGAGGGCGCACTGCAAGATG +
Preference number: 5 (lower is better)
Translates to: EGSFLCFQLSSCCLRSILKKAGR*RAHCKM
Trigger: CATCTTGCAGTGCGCCCTCAACCGCCCTGCCTTCTT...CAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp GTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCGCTAGGGTAGGGAGCTaGTCCTCCAGGGTACTGAGA +
Preference number: 5 (lower is better)
Translates to: VPQGTPTTQWDSLLTAATARVGS*SSRVLR
Trigger: TCTCAGTACCCTGGAGGACAAGCTCCCTACCCTAGC...GGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp TTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGCTGGATACCCACCACTaGGTGCTGGTGGGTAAGCAC +
Preference number: 5 (lower is better)
Translates to: FQHPLPVSVRKIGMQVAGLDTHH*VLVGKH
Trigger: GTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAG...CCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCATGGGGCCCCAAAGCCTaGGCCTCCAGGATAGGCTGG +
Preference number: 5 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQAWGPKA*ASRIGW
Trigger: CCAGCCTATCCTGGAGGCCAAGGCTTTGGGGCCCCA...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp AGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTGGGAGGATTGTTCCTaGGGTGCCCTGAGTCATCGA +
Preference number: 5 (lower is better)
Translates to: RQFPVLPVKLLLPQEHSGWEDCS*GALSHR
Trigger: TCGATGACTCAGGGCACCCAAGGAACAATCCTCCCA...ACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp CAGGTCTCATTGCATGGAAGGATAGGTCCTGAAGAGCTTCATTCCTTAAAGGGGAAGAAGGCAGGGCGGTaGAGGGCGCACTGCAAGATG +
Preference number: 5 (lower is better)
Translates to: QVSLHGRIGPEELHSLKGKKAGR*RAHCKM
Trigger: CATCTTGCAGTGCGCCCTCAACCGCCCTGCCTTCTT...CCCCTTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCATGCAATGAGACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp GTTCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCCTCCACTCGTGTCACTaGCGATCATTGTGCTTAGGG +
Preference number: 5 (lower is better)
Translates to: VPQGTPTTQWDSLLTAATLHSCH*RSLCLG
Trigger: CCCTAAGCACAATGATCGCAAGTGACACGAGTGGAG...GGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp TCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCAGAACATCCACAATTGCTaGCTCGTCTGTCCCAAACCC +
Preference number: 5 (lower is better)
Translates to: STRHSHHTVGFITNSCHQNIHNC*LVCPKP
Trigger: GGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTT...CTGGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp AAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCACAAGCAAAGAAGGCAGGGCGGTaGAGGGCGCACTGCAAGATG +
Preference number: 5 (lower is better)
Translates to: KHRGPGFRYQHSHNSSQAKKAGR*RAHCKM
Trigger: CATCTTGCAGTGCGCCCTCAACCGCCCTGCCTTCTT...TGCTTGTGAACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp TCCATTTTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATTGGAGGCTGGGAGGATaGTTCCTTGGGTGCCCTGAG +
Preference number: 5 (lower is better)
Translates to: SILGFPTPSPSLCEKNRHWRLGG*FLGCPE
Trigger: CTCAGGGCACCCAAGGAACAATCCTCCCAGCCTCCA...ATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAAAATGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp AGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTCTCATAGCATCAAAGTaGGAGGCTGGGAGGATTGTT +
Preference number: 5 (lower is better)
Translates to: RQFPVLPVKLLLPQEHSGLIASK*EAGRIV
Trigger: AACAATCCTCCCAGCCTCCAACTTTGATGCTATGAG...ACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp TCCACAAGGCACTCCCACCACACAGTGGGATTCATTACTAACAGCTGCCACCAGCTCATAGCATCAAAGTaGGAGGCTGGGAGGATTGTT +
Preference number: 5 (lower is better)
Translates to: STRHSHHTVGFITNSCHQLIASK*EAGRIV
Trigger: AACAATCCTCCCAGCCTCCAACTTTGATGCTATGAG...CTGGTGGCAGCTGTTAGTAATGAATCCCACTGTGTGGTGGGAGTGCCTTGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp TTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGAACATCCACAATTGCTaGCTCGTCTGTCCCAAACCC +
Preference number: 5 (lower is better)
Translates to: FQHPLPVSVRKIGMQVAGNIHNC*LVCPKP
Trigger: GGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTT...CCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp GGAGAAGGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTACACAACATCCACAATaGCTTGCTCGTCTGTCCCAA +
Preference number: 5 (lower is better)
Translates to: GEGSFLCFQLSSCCLRSITQHPQ*LARLSQ
Trigger: TTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGT...AATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCCTTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp CAGGACGTCACTGTCAGAGCTGTGTGGTGTTCCACAAGGCACTCCCACCACACAAAAAGCTGCTTTGATTaGTTGCCTCTGGTCATTGGA +
Preference number: 5 (lower is better)
Translates to: QDVTVRAVWCSTRHSHHTKSCFD*LPLVIG
Trigger: TCCAATGACCAGAGGCAACAAATCAAAGCAGCTTTT...TGTGTGGTGGGAGTGCCTTGTGGAACACCACACAGCTCTGACAGTGACGTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp TCCATTTTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCTAGGGTAGGGAGCTaGTCCTCCAGGGTACTGAGA +
Preference number: 5 (lower is better)
Translates to: SILGFPTPSPSLCEKNRHARVGS*SSRVLR
Trigger: TCTCAGTACCCTGGAGGACAAGCTCCCTACCCTAGC...ATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAAAATGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTTGGAGGCTGGGAGGATaGTTCCTTGGGTGCCCTGAG +
Preference number: 5 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTWRLGG*FLGCPE
Trigger: CTCAGGGCACCCAAGGAACAATCCTCCCAGCCTCCA...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp GGCAGTTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTTCCCAAACCCTTTCATaGCTTTGCGGAGAATTTCTG +
Preference number: 5 (lower is better)
Translates to: GSFLCFQLSSCCLRSILVSQTLS*LCGEFL
Trigger: CAGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGA...AACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAACTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp GGTAGAGACACAGAAGTAATCAGGTTACTCATGGGCCTGGGCCGTGGATGGGGAAAAAGCTGCTTTGATTaGTTGCCTCTGGTCATTGGA +
Preference number: 5 (lower is better)
Translates to: GRDTEVIRLLMGLGRGWGKSCFD*LPLVIG
Trigger: TCCAATGACCAGAGGCAACAAATCAAAGCAGCTTTT...TCCCCATCCACGGCCCAGGCCCATGAGTAACCTGATTACTTCTGTGTCTCTACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp CAGGTCTCATTGCATGGAAGGATAGGTCCTGAAGAGCTTCATTCCTTAAAGGGGCTCCACTCGTGTCACTaGCGATCATTGTGCTTAGGG +
Preference number: 5 (lower is better)
Translates to: QVSLHGRIGPEELHSLKGLHSCH*RSLCLG
Trigger: CCCTAAGCACAATGATCGCAAGTGACACGAGTGGAG...CCCCTTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCATGCAATGAGACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCTGGATACCCACCACTaGGTGCTGGTGGGTAAGCAC +
Preference number: 5 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTLDTHH*VLVGKH
Trigger: GTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAG...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATTGGGGCCCCAAAGCCTaGGCCTCCAGGATAGGCTGG +
Preference number: 5 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHWGPKA*ASRIGW
Trigger: CCAGCCTATCCTGGAGGCCAAGGCTTTGGGGCCCCA...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCAGCTAGGGTAGGGAGCTaGTCCTCCAGGGTACTGAGA +
Preference number: 5 (lower is better)
Translates to: QHSHNSSQASVASILGFPARVGS*SSRVLR
Trigger: TCTCAGTACCCTGGAGGACAAGCTCCCTACCCTAGC...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp TCCATTTTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATTGGGAGGATTGTTCCTaGGGTGCCCTGAGTCATCGA +
Preference number: 5 (lower is better)
Translates to: SILGFPTPSPSLCEKNRHWEDCS*GALSHR
Trigger: TCGATGACTCAGGGCACCCAAGGAACAATCCTCCCA...ATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAAAATGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp TGTGCAAACCCAGCACACCCCCTGACAGTCTTCAGTAGAAAACTACTCTGGTCACTCATAGCATCAAAGTaGGAGGCTGGGAGGATTGTT +
Preference number: 5 (lower is better)
Translates to: CANPAHPLTVFSRKLLWSLIASK*EAGRIV
Trigger: AACAATCCTCCCAGCCTCCAACTTTGATGCTATGAG...TGACCAGAGTAGTTTTCTACTGAAGACTGTCAGGGGGTGTGCTGGGTTTGCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp TTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTCCCAAACCCTTTCATaGCTTTGCGGAGAATTTCTG +
Preference number: 5 (lower is better)
Translates to: FQHPLPVSVRKIGMQVAGSQTLS*LCGEFL
Trigger: CAGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGA...CCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS GCA 90 bp TTGCTCGTCTGTCCCAAACCCTTTCATTGCTTTGCGGAGAATTTCTaGATCTCTCATAGCATCAAAGTTGGAGGCTGGGAGGATTGTTCC +
Preference number: 5 (lower is better)
Translates to: LLVCPKPFHCFAENF*ISHSIKVGGWEDCS
Trigger: GGAACAATCCTCCCAGCCTCCAACTTTGATGCTATGAGAGATGCAGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGACAGACGAGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp AATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTCTGGATACCCACCACTaGGTGCTGGTGGGTAAGCAC +
Preference number: 5 (lower is better)
Translates to: NKLNTEDLGSDTSTHTIVLDTHH*VLVGKH
Trigger: GTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAG...AACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCATGGGAGGATTGTTCCTaGGGTGCCCTGAGTCATCGA +
Preference number: 5 (lower is better)
Translates to: QHSHNSSQASVASILGFPWEDCS*GALSHR
Trigger: TCGATGACTCAGGGCACCCAAGGAACAATCCTCCCA...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATACACAACATCCACAATaGCTTGCTCGTCTGTCCCAA +
Preference number: 5 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHTQHPQ*LARLSQ
Trigger: TTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGT...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS GCA 90 bp TGCCTCTGGTCATTGGAACGGTTAGACACAACATCCACAATTGCTTaGTCGTCTGTCCCAAACCCTTTCATTGCTTTGCGGAGAATTTCT +
Preference number: 5 (lower is better)
Translates to: CLWSLERLDTTSTIA*SSVPNPFIALRRIS
Trigger: AGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGACCAGAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS GCA 90 bp TTGTTGCCTCTGGTCATTGGAACGGTTAGACACAACATCCACAATTaGTTGCTCGTCTGTCCCAAACCCTTTCATTGCTTTGCGGAGAAT +
Preference number: 5 (lower is better)
Translates to: LLPLVIGTVRHNIHN*LLVCPKPFHCFAEN
Trigger: ATTCTCCGCAAAGCAATGAAAGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGACCAGAGGCAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp AATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAATAGTTTGGGAGGATTGTTCCTaGGGTGCCCTGAGTCATCGA +
Preference number: 5 (lower is better)
Translates to: NKLNTEDLGSDTSTHTIVWEDCS*GALSHR
Trigger: TCGATGACTCAGGGCACCCAAGGAACAATCCTCCCA...AACTATTGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp ATTTTCCCTGTGACAATTAAATGTAGAATGGTGCTTGCTTTTGCCCTTATCCATTGGAGGCTGGGAGGATaGTTCCTTGGGTGCCCTGAG +
Preference number: 5 (lower is better)
Translates to: IFPVTIKCRMVLAFALIHWRLGG*FLGCPE
Trigger: CTCAGGGCACCCAAGGAACAATCCTCCCAGCCTCCA...ATGGATAAGGGCAAAAGCAAGCACCATTCTACATTTAATTGTCACAGGGAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp ACAGCGTGTTTTAACAAACTCCGTTCCCATCCTCTCATTCTTTTAACATTAAACTGGAGGCTGGGAGGATaGTTCCTTGGGTGCCCTGAG +
Preference number: 5 (lower is better)
Translates to: TACFNKLRSHPLILLTLNWRLGG*FLGCPE
Trigger: CTCAGGGCACCCAAGGAACAATCCTCCCAGCCTCCA...GTTTAATGTTAAAAGAATGAGAGGATGGGAACGGAGTTTGTTAAAACACGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp TTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTCTCATAGCATCAAAGTaGGAGGCTGGGAGGATTGTT +
Preference number: 5 (lower is better)
Translates to: LGFPTPSPSLCEKNRHASLIASK*EAGRIV
Trigger: AACAATCCTCCCAGCCTCCAACTTTGATGCTATGAG...ACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp TCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGGCTGGGTGCATGTACATTCCCAAACCCTTTCATaGCTTTGCGGAGAATTTCTG +
Preference number: 5 (lower is better)
Translates to: SPSLCEKNRHASGWVHVHSQTLS*LCGEFL
Trigger: CAGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGA...ATGTACATGCACCCAGCCACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp TTTCCTGTGCTTCCAGTTAAGCTCCTGCTGCCTCAGGAGCATTCTGGTTACCATGTCTTAAAAGCTGCTTaGATTTGTTGCCTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: FPVLPVKLLLPQEHSGYHVLKAA*ICCLWS
Trigger: TGACCAGAGGCAACAAATCAAAGCAGCTTTTAAGAC...ATGGTAACCAGAATGCTCCTGAGGCAGCAGGAGCTTAACTGGAAGCACAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCACTCCACTCGTGTCACTaGCGATCATTGTGCTTAGGG +
Preference number: 5 (lower is better)
Translates to: QHSHNSSQASVASILGFPLHSCH*RSLCLG
Trigger: CCCTAAGCACAATGATCGCAAGTGACACGAGTGGAG...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp AAGCTCTACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTAACATCCACAATTGCTaGCTCGTCTGTCCCAAACCC +
Preference number: 5 (lower is better)
Translates to: KLYSNKLNTEDLGSDTSTNIHNC*LVCPKP
Trigger: GGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTT...AGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTAGAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCAAACATCCACAATTGCTaGCTCGTCTGTCCCAAACCC +
Preference number: 5 (lower is better)
Translates to: QHSHNSSQASVASILGFPNIHNC*LVCPKP
Trigger: GGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTT...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp TCCATTTTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATACACAACATCCACAATaGCTTGCTCGTCTGTCCCAA +
Preference number: 5 (lower is better)
Translates to: SILGFPTPSPSLCEKNRHTQHPQ*LARLSQ
Trigger: TTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGT...ATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAAAATGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp CAGGTCTCATTGCATGGAAGGATAGGTCCTGAAGAGCTTCATTCCTTAAAGGGGGTCTTAAAAGCTGCTTaGATTTGTTGCCTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: QVSLHGRIGPEELHSLKGVLKAA*ICCLWS
Trigger: TGACCAGAGGCAACAAATCAAAGCAGCTTTTAAGAC...CCCCTTTAAGGAATGAAGCTCTTCAGGACCTATCCTTCCATGCAATGAGACCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS-3UTR CAA 90 bp TACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAACACAACATCCACAATaGCTTGCTCGTCTGTCCCAA +
Preference number: 5 (lower is better)
Translates to: YSNKLNTEDLGSDTSTHTTQHPQ*LARLSQ
Trigger: TTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGT...TGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp TTAGGGTTTCCAACACCCTCTCCCAGTCTCTGTGAGAAAAATAGGCATGCAAGTGTCTTAAAAGCTGCTTaGATTTGTTGCCTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: LGFPTPSPSLCEKNRHASVLKAA*ICCLWS
Trigger: TGACCAGAGGCAACAAATCAAAGCAGCTTTTAAGAC...ACTTGCATGCCTATTTTTCTCACAGAGACTGGGAGAGGGTGTTGGAAACCCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCATCCCAAACCCTTTCATaGCTTTGCGGAGAATTTCTG +
Preference number: 5 (lower is better)
Translates to: QHSHNSSQASVASILGFPSQTLS*LCGEFL
Trigger: CAGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGA...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp CAGCACTCACACAATAGTTCACAAGCATCTGTAGCTTCCATTTTAGGGTTTCCAAAAAGCTGCTTTGATTaGTTGCCTCTGGTCATTGGA +
Preference number: 5 (lower is better)
Translates to: QHSHNSSQASVASILGFPKSCFD*LPLVIG
Trigger: TCCAATGACCAGAGGCAACAAATCAAAGCAGCTTTT...TGGAAACCCTAAAATGGAAGCTACAGATGCTTGTGAACTATTGTGTGAGTGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp TACTCTAATAAACTAAACACAGAGGACCTGGGTTCAGATACCAGCACTCACACAAAAAGCTGCTTTGATTaGTTGCCTCTGGTCATTGGA +
Preference number: 5 (lower is better)
Translates to: YSNKLNTEDLGSDTSTHTKSCFD*LPLVIG
Trigger: TCCAATGACCAGAGGCAACAAATCAAAGCAGCTTTT...TGTGTGAGTGCTGGTATCTGAACCCAGGTCCTCTGTGTTTAGTTTATTAGAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS-3UTR CAA 90 bp ACAGCGTGTTTTAACAAACTCCGTTCCCATCCTCTCATTCTTTTAACATTAAACGTCTTAAAAGCTGCTTaGATTTGTTGCCTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: TACFNKLRSHPLILLTLNVLKAA*ICCLWS
Trigger: TGACCAGAGGCAACAAATCAAAGCAGCTTTTAAGAC...GTTTAATGTTAAAAGAATGAGAGGATGGGAACGGAGTTTGTTAAAACACGCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS CCA 72 bp TGGCTGTGGATAGCCAGAAAAGCCTGCTCCACCGGGTaGGGCCCCAAAGCCTTGGCCTCCAGGATAGGCTGG +
Preference number: 6 (lower is better)
Translates to: WLWIARKACSTG*GPKALASRIGW
Trigger: CCAGCCTATCCTGGAGGCCAAGGCTTTGGGGCCCCACCCGGTGGAGCAGGCTTTTCTGGCTATCCACAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS CCA 72 bp GGCTGGTCCGCCACCATAAGACTGTGCAGGTGGCTGTaGATAGCCAGAAAAGCCTGCTCCACCGGGTGGGGC +
Preference number: 6 (lower is better)
Translates to: GWSATIRLCRWL*IARKACSTGWG
Trigger: GCCCCACCCGGTGGAGCAGGCTTTTCTGGCTATCCACAGCCACCTGCACAGTCTTATGGTGGCGGACCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS CCA 72 bp TGCGGGGTAGCCTCCAGCTCCTGGATACCCACCACTTaGTGCTGGTGGGTAAGCACCTCCTCCCATTGGTGG +
Preference number: 6 (lower is better)
Translates to: CGVASSSWIPTT*CWWVSTSSHWW
Trigger: CCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCCGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CAA 72 bp GTGCGGGGTAGCCTCCAGCTCCTGGATACCCACCACTaGGTGCTGGTGGGTAAGCACCTCCTCCCATTGGTG +
Preference number: 6 (lower is better)
Translates to: VRGSLQLLDTHH*VLVGKHLLPLV
Trigger: CACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCCGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CAA 90 bp AACCTCCAGGTGCGGGGTAGCCTCCAGCTCCTGGATACCCACCACTaGGTGCTGGTGGGTAAGCACCTCCTCCCATTGGTGGAAAGCCAC +
Preference number: 6 (lower is better)
Translates to: NLQVRGSLQLLDTHH*VLVGKHLLPLVESH
Trigger: GTGGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCCGCACCTGGAGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 72 bp TGGATAACCTCCAGGTGCGGGGTAGCCTCCAGCTCCTaGATACCCACCACTTGGTGCTGGTGGGTAAGCACC +
Preference number: 6 (lower is better)
Translates to: WITSRCGVASSS*IPTTWCWWVST
Trigger: GGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCCGCACCTGGAGGTTATCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 72 bp TCCTCCAGGAAAGCCACCTGGTACTGGAACCTGGGCTaGTCCGCCACCATAAGACTGTGCAGGTGGCTGTGG +
Preference number: 6 (lower is better)
Translates to: SSRKATWYWNLG*SATIRLCRWLW
Trigger: CCACAGCCACCTGCACAGTCTTATGGTGGCGGACCAGCCCAGGTTCCAGTACCAGGTGGCTTTCCTGGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS CAA 90 bp TTGGGTGCCCTGAGTCATCGAAGCGGGCTGGCTAGGGTAGGGAGCTaGTCCTCCAGGGTACTGAGATGGCATCTGTCCTCCAGGAAAGCC +
Preference number: 6 (lower is better)
Translates to: LGALSHRSGLARVGS*SSRVLRWHLSSRKA
Trigger: GGCTTTCCTGGAGGACAGATGCCATCTCAGTACCCTGGAGGACAAGCTCCCTACCCTAGCCAGCCCGCTTCGATGACTCAGGGCACCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065504.17
ENSMUST00000224975.2
CDS GCA 72 bp GGGGTAGCCTCCAGCTCCTGGATACCCACCACTTGGTaGTGGTGGGTAAGCACCTCCTCCCATTGGTGGAAA +
Preference number: 6 (lower is better)
Translates to: GVASSSWIPTTW*WWVSTSSHWWK
Trigger: TTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 72 bp ACCACTTGGTGCTGGTGGGTAAGCACCTCCTCCCATTaGTGGAAAGCCACTAGGGTACGGGTACTGACCCGC +
Preference number: 6 (lower is better)
Translates to: TTWCWWVSTSSH*WKATRVRVLTR
Trigger: GCGGGTCAGTACCCGTACCCTAGTGGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 72 bp GTAGCCTCCAGCTCCTGGATACCCACCACTTGGTGCTaGTGGGTAAGCACCTCCTCCCATTGGTGGAAAGCC +
Preference number: 6 (lower is better)
Translates to: VASSSWIPTTWC*WVSTSSHWWKA
Trigger: GGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGTGGTGGGTATCCAGGAGCTGGAGGCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS GCA 72 bp TACTGGAACCTGGGCTGGTCCGCCACCATAAGACTGTaGAGGTGGCTGTGGATAGCCAGAAAAGCCTGCTCC +
Preference number: 6 (lower is better)
Translates to: YWNLGWSATIRL*RWLWIARKACS
Trigger: GGAGCAGGCTTTTCTGGCTATCCACAGCCACCTGCACAGTCTTATGGTGGCGGACCAGCCCAGGTTCCAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS CCA 72 bp ACTTGGTGCTGGTGGGTAAGCACCTCCTCCCATTGGTaGAAAGCCACTAGGGTACGGGTACTGACCCGCAGT +
Preference number: 6 (lower is better)
Translates to: TWCWWVSTSSHW*KATRVRVLTRS
Trigger: ACTGCGGGTCAGTACCCGTACCCTAGTGGCTTTCCACCAATGGGAGGAGGTGCTTACCCACCAGCACCAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS TCA 72 bp ACTAGGGTACGGGTACTGACCCGCAGTGGGGAAAGATaGCTCCTGACCTGCAGGAGGATATCCAGGGAAAGG +
Preference number: 6 (lower is better)
Translates to: TRVRVLTRSGER*LLTCRRISRER
Trigger: CCTTTCCCTGGATATCCTCCTGCAGGTCAGGAGTCATCTTTCCCCACTGCGGGTCAGTACCCGTACCCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225132.2
CDS CCA 72 bp GTACTGAGATGGCATCTGTCCTCCAGGAAAGCCACCTaGTACTGGAACCTGGGCTGGTCCGCCACCATAAGA +
Preference number: 6 (lower is better)
Translates to: VLRWHLSSRKAT*YWNLGWSATIR
Trigger: TCTTATGGTGGCGGACCAGCCCAGGTTCCAGTACCAGGTGGCTTTCCTGGAGGACAGATGCCATCTCAGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS CCA 72 bp TGGTGGTTCACGCTCTGCCTCTCGTCACGGTTTCCCTaGCACATGGACACGAGGAGACGTTCAAAATGTCCC +
Preference number: 6 (lower is better)
Translates to: WWFTLCLSSRFP*HMDTRRRSKCP
Trigger: GGGACATTTTGAACGTCTCCTCGTGTCCATGTGCCAGGGAAACCGTGACGAGAGGCAGAGCGTGAACCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS TCA 72 bp TCAGCTGAGGGAAGCTCCTTGTGGCGAGAATCATGTTaGAACAGGATTCATCCGTTCCCAGTCTCCCCTCCC +
Preference number: 6 (lower is better)
Translates to: SAEGSSLWRESC*NRIHPFPVSPP
Trigger: GGGAGGGGAGACTGGGAACGGATGAATCCTGTTTCAACATGATTCTCGCCACAAGGAGCTTCCCTCAGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS GCA 72 bp CATCAAAGTTGGAGGCTGGGAGGATTGTTCCTTGGGTaGCCTGAGTCATCGAAGCGGGATCACTGCTATAAT +
Preference number: 6 (lower is better)
Translates to: HQSWRLGGLFLG*PESSKRDHCYN
Trigger: ATTATAGCAGTGATCCCGCTTCGATGACTCAGGGCACCCAAGGAACAATCCTCCCAGCCTCCAACTTTGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100844.6
CDS TCA 72 bp AATAGTAGAGTCGTTCAGCAAAGAAGGCAGGGCGGTTaGGGGCGCACTGCAAGATGGTCTTCAAACCACTTT +
Preference number: 6 (lower is better)
Translates to: NSRVVQQRRQGG*GRTARWSSNHF
Trigger: AAAGTGGTTTGAAGACCATCTTGCAGTGCGCCCTCAACCGCCCTGCCTTCTTTGCTGAACGACTCTACTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS TCA 72 bp GGACACGAGGAGACGTTCAAAATGTCCCGAGGTATCTaGCCTAATGTCCTTCTCAAGGTCTCGTCCAAATTC +
Preference number: 6 (lower is better)
Translates to: GHEETFKMSRGI*PNVLLKVSSKF
Trigger: GAATTTGGACGAGACCTTGAGAAGGACATTAGGTCAGATACCTCGGGACATTTTGAACGTCTCCTCGTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS CAA 72 bp CCAGGAGCAGCTTCCTGTAATCTCCACTCGTGTCACTaGCGATCATTGTGCTTAGGGTCTTCTGATACATCT +
Preference number: 6 (lower is better)
Translates to: PGAASCNLHSCH*RSLCLGSSDTS
Trigger: AGATGTATCAGAAGACCCTAAGCACAATGATCGCAAGTGACACGAGTGGAGATTACAGGAAGCTGCTCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
CDS CAA 90 bp TTGCCTCTGGTCATTGGAACGGTTAGACACAACATCCACAATTGCTaGCTCGTCTGTCCCAAACCCTTTCATTGCTTTGCGGAGAATTTC +
Preference number: 6 (lower is better)
Translates to: LPLVIGTVRHNIHNC*LVCPKPFHCFAENF
Trigger: GAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGACCAGAGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS GCA 72 bp TGTCCCAAACCCTTTCATTGCTTTGCGGAGAATTTCTaGATCTCTCATAGCATCAAAGTTGGAGGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: CPKPFHCFAENF*ISHSIKVGGWE
Trigger: CTCCCAGCCTCCAACTTTGATGCTATGAGAGATGCAGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS GCA 72 bp TCATTGGAACGGTTAGACACAACATCCACAATTGCTTaGTCGTCTGTCCCAAACCCTTTCATTGCTTTGCGG +
Preference number: 6 (lower is better)
Translates to: SLERLDTTSTIA*SSVPNPFIALR
Trigger: CCGCAAAGCAATGAAAGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS CAA 72 bp GTCATTGGAACGGTTAGACACAACATCCACAATTGCTaGCTCGTCTGTCCCAAACCCTTTCATTGCTTTGCG +
Preference number: 6 (lower is better)
Translates to: VIGTVRHNIHNC*LVCPKPFHCFA
Trigger: CGCAAAGCAATGAAAGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS GCA 72 bp CTGGTCATTGGAACGGTTAGACACAACATCCACAATTaGTTGCTCGTCTGTCCCAAACCCTTTCATTGCTTT +
Preference number: 6 (lower is better)
Translates to: LVIGTVRHNIHN*LLVCPKPFHCF
Trigger: AAAGCAATGAAAGGGTTTGGGACAGACGAGCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGACCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS CAA 90 bp CCATACATGGTCTTAAAAGCTGCTTTGATTTGTTGCCTCTGGTCATaGGAACGGTTAGACACAACATCCACAATTGCTTGCTCGTCTGTC +
Preference number: 6 (lower is better)
Translates to: PYMVLKAALICCLWS*ERLDTTSTIACSSV
Trigger: GACAGACGAGCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGACCAGAGGCAACAAATCAAAGCAGCTTTTAAGACCATGTATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS CAA 72 bp ATTGCTTGCTCGTCTGTCCCAAACCCTTTCATTGCTTaGCGGAGAATTTCTGCATCTCTCATAGCATCAAAG +
Preference number: 6 (lower is better)
Translates to: IACSSVPNPFIA*RRISASLIASK
Trigger: CTTTGATGCTATGAGAGATGCAGAAATTCTCCGCAAAGCAATGAAAGGGTTTGGGACAGACGAGCAAGCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS CAA 72 bp GTCTTAAAAGCTGCTTTGATTTGTTGCCTCTGGTCATaGGAACGGTTAGACACAACATCCACAATTGCTTGC +
Preference number: 6 (lower is better)
Translates to: VLKAALICCLWS*ERLDTTSTIAC
Trigger: GCAAGCAATTGTGGATGTTGTGTCTAACCGTTCCAATGACCAGAGGCAACAAATCAAAGCAGCTTTTAAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2
ENSMUST00000225941.2
CDS TCA 72 bp CGATCATTGTGCTTAGGGTCTTCTGATACATCTGGGTaGACATCTGTTTTATCTGAACAAGGTCAATCTCAC +
Preference number: 6 (lower is better)
Translates to: RSLCLGSSDTSG*TSVLSEQGQSH
Trigger: GTGAGATTGACCTTGTTCAGATAAAACAGATGTTCACCCAGATGTATCAGAAGACCCTAAGCACAATGATCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065504.17
ENSMUST00000100844.6
ENSMUST00000224975.2