RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANXA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024659

Ensembl transcript IDs: ENSMUST00000025561.8, ENSMUST00000171423.9, ENSMUST00000235280.2

Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATGTCAATTTCCGAACGGGAGACCATAATCCTGATCAATGCCTTATaGCGAGTTCCGGCACCCTTTTCTAAAAGTGCATCAAATCCAACA +
Preference number: 1 (lower is better)
Translates to: MSISERETIILINAL*RVPAPFSKSASNPT
Trigger: TGTTGGATTTGATGCACTTTTAGAAAAGGGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
3UTR-3UTR CCA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTGATCAATGCCTTATaGCGAGTTCCGGCACCCTTT +
Preference number: 2 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGLINAL*RVPAPF
Trigger: AAAGGGTGCCGGAACTCGCCATAAGGCATTGATCAG...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
3UTR-3UTR CCA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGTGGTTTCATCCAGGATaGCTTGGCAAAGAGAGATTC +
Preference number: 2 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGWFHPG*LGKERF
Trigger: GAATCTCTCTTTGCCAAGCCATCCTGGATGAAACCA...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
3UTR-3UTR GCA 90 bp AACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTGTAATTAGACTTATCTaGCAAAGCAACTTTCCTACT +
Preference number: 2 (lower is better)
Translates to: NFFLRNGTKVTCLWGFIIVIRLI*QSNFPT
Trigger: AGTAGGAAAGTTGCTTTGGCAGATAAGTCTAATTAC...AATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
3UTR-3UTR CCA 90 bp AACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTAAAGTGACTTGCTTATaGGGCTTTATAATTTGGGAT +
Preference number: 2 (lower is better)
Translates to: NFFLRNGTKVTCLWGFIIKVTCL*GFIIWD
Trigger: ATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTT...AATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
3UTR CCA 72 bp TCCGAACGGGAGACCATAATCCTGATCAATGCCTTATaGCGAGTTCCGGCACCCTTTTCTAAAAGTGCATCA +
Preference number: 3 (lower is better)
Translates to: SERETIILINAL*RVPAPFSKSAS
Trigger: TGATGCACTTTTAGAAAAGGGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
3UTR GCA 72 bp ACTTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATaGCATCGAAGGAAAACAGCTAAGAGACATTCTCCT +
Preference number: 3 (lower is better)
Translates to: TYLPKQLSYLSP*HRRKTAKRHSP
Trigger: AGGAGAATGTCTCTTAGCTGTTTTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp TTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAAACAGCAACACTCTGCGAAGATaGGGAAAGCTCCTGCTGGTC +
Preference number: 4 (lower is better)
Translates to: LSAKATFLLKPMPSKENSNTLRR*GKLLLV
Trigger: GACCAGCAGGAGCTTTCCTCATCTTCGCAGAGTGTT...GCTGTTTTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp TCAGAACCTTGCAGAATAGTTGGGATGTCTAGTTTCCACCACACAGAGCCACCAACCATGATAGCTTTGTaGAAGGCAGCAACATCCGAG +
Preference number: 4 (lower is better)
Translates to: SEPCRIVGMSSFHHTEPPTMIAL*KAATSE
Trigger: CTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGT...TGGTGGCTCTGTGTGGTGGAAACTAGACATCCCAACTATTCTGCAAGGTTCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR CCA 90 bp TTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAAACAGCGACAACGGTCACCCTTaGCAAGAGCAAGCAAGGCTT +
Preference number: 4 (lower is better)
Translates to: LSAKATFLLKPMPSKENSDNGHP*QEQARL
Trigger: AAGCCTTGCTTGCTCTTGCCAAGGGTGACCGTTGTC...GCTGTTTTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp TTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATGTAGGGGCTCACTGCTaGCCCAGGACCACCTTTGTA +
Preference number: 4 (lower is better)
Translates to: FLRNGTKVTCLWGFIIWDVGAHC*PRTTFV
Trigger: TACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTAC...ATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp CAGGATGGCTTGGCAAAGAGAGATTCCATACTTCTTCTGGTAAAATACTTTGATGTAGGGGCTCACTGCTaGCCCAGGACCACCTTTGTA +
Preference number: 4 (lower is better)
Translates to: QDGLAKRDSILLLVKYFDVGAHC*PRTTFV
Trigger: TACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTAC...ATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR TCA 90 bp TCATTCATGTCAATTTCCGAACGGGAGACCATAATCCTGATCAATGCCTTATGGAACACTCTGCGAAGATaGGGAAAGCTCCTGCTGGTC +
Preference number: 4 (lower is better)
Translates to: SFMSISERETIILINALWNTLRR*GKLLLV
Trigger: GACCAGCAGGAGCTTTCCTCATCTTCGCAGAGTGTT...CCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR GCA 90 bp TTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAAACAGCCAAAGAAAGCTGGAGTaGTGGTGGCACACTTCACGA +
Preference number: 4 (lower is better)
Translates to: LSAKATFLLKPMPSKENSQRKLE*WWHTSR
Trigger: TCGTGAAGTGTGCCACCAGCACTCCAGCTTTCTTTG...GCTGTTTTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp TTAGACTTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAACTGATCAATGCCTTATaGCGAGTTCCGGCACCCTTC +
Preference number: 4 (lower is better)
Translates to: LDLSAKATFLLKPMPSKELINAL*RVPAPF
Trigger: GAAGGGTGCCGGAACTCGCCATAAGGCATTGATCAG...TTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAAGTCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp AACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTGTAGGGGCTCACTGCTaGCCCAGGACCACCTTTGTA +
Preference number: 4 (lower is better)
Translates to: NFFLRNGTKVTCLWGFIIVGAHC*PRTTFV
Trigger: TACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTAC...AATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp GAACCTTGCAGAATAGTTGGGATGTCTAGTTTCCACCACACAGAGCCACCAGGATCATCTGCATCAAACTaGGCTGGAGTTTTTAGCATA +
Preference number: 4 (lower is better)
Translates to: EPCRIVGMSSFHHTEPPGSSASN*AGVFSI
Trigger: TATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGA...TCCTGGTGGCTCTGTGTGGTGGAAACTAGACATCCCAACTATTCTGCAAGGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR GCA 90 bp TTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAAACAGCACCATGATAGCTTTGTaGAAGGCAGCAACATCCGAG +
Preference number: 4 (lower is better)
Translates to: LSAKATFLLKPMPSKENSTMIAL*KAATSE
Trigger: CTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGT...GCTGTTTTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp GCCATCGAAGGAAAACAGCTAAGAGACATTCTCCTCAGAACCTTGCAGAATAGTACCACGGAGTTCATCTaGATCAAACTGAGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: AIEGKQLRDILLRTLQNSTTEFI*IKLSWS
Trigger: ACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGT...ACTATTCTGCAAGGTTCTGAGGAGAATGTCTCTTAGCTGTTTTCCTTCGATGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp TATGGCGAGTTCCGGCACCCTTTTCTAAAAGTGCATCAAATCCAACAAGTATGTCAAAGAAAGCTGGAGTaGTGGTGGCACACTTCACGA +
Preference number: 4 (lower is better)
Translates to: YGEFRHPFLKVHQIQQVCQRKLE*WWHTSR
Trigger: TCGTGAAGTGTGCCACCAGCACTCCAGCTTTCTTTG...ACATACTTGTTGGATTTGATGCACTTTTAGAAAAGGGTGCCGGAACTCGCCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR GCA 90 bp TTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAAACAGCCATAATCCTGATCAATaGCTTATGGCGAGTTCCGGC +
Preference number: 4 (lower is better)
Translates to: LSAKATFLLKPMPSKENSHNPDQ*LMASSG
Trigger: GCCGGAACTCGCCATAAGGCATTGATCAGGATTATG...GCTGTTTTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp GATTTCATTCATGTCAATTTCCGAACGGGAGACCATAATCCTGATCAATGCCTTGACAACGGTCACCCTTaGCAAGAGCAAGCAAGGCTT +
Preference number: 4 (lower is better)
Translates to: DFIHVNFRTGDHNPDQCLDNGHP*QEQARL
Trigger: AAGCCTTGCTTGCTCTTGCCAAGGGTGACCGTTGTC...AAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR TCA 90 bp TTAGACTTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAGAAAACGGGCCTGCTTaGGGAATTCTGATACCATTG +
Preference number: 4 (lower is better)
Translates to: LDLSAKATFLLKPMPSKEENGPA*GILIPL
Trigger: CAATGGTATCAGAATTCCTCAAGCAGGCCCGTTTTC...TTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAAGTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp TATGGCGAGTTCCGGCACCCTTTTCTAAAAGTGCATCAAATCCAACAAGTATGTGAAAACGGGCCTGCTTaGGGAATTCTGATACCATTG +
Preference number: 4 (lower is better)
Translates to: YGEFRHPFLKVHQIQQVCENGPA*GILIPL
Trigger: CAATGGTATCAGAATTCCTCAAGCAGGCCCGTTTTC...ACATACTTGTTGGATTTGATGCACTTTTAGAAAAGGGTGCCGGAACTCGCCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR TCA 90 bp CTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAACATCCGAGGATACATTaGAGGAAGGGTAGGGGCTCA +
Preference number: 4 (lower is better)
Translates to: LRNGTKVTCLWGFIIWDKHPRIH*RKGRGS
Trigger: TGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATG...TTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp GCCATCGAAGGAAAACAGCTAAGAGACATTCTCCTCAGAACCTTGCAGAATAGTTCAAGAAAACGGGCCTaGTTGAGGAATTCTGATACC +
Preference number: 4 (lower is better)
Translates to: AIEGKQLRDILLRTLQNSSRKRA*LRNSDT
Trigger: GGTATCAGAATTCCTCAAGCAGGCCCGTTTTCTTGA...ACTATTCTGCAAGGTTCTGAGGAGAATGTCTCTTAGCTGTTTTCCTTCGATGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp TTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAAACAGCTCAAGAAAACGGGCCTaGTTGAGGAATTCTGATACC +
Preference number: 4 (lower is better)
Translates to: LSAKATFLLKPMPSKENSSRKRA*LRNSDT
Trigger: GGTATCAGAATTCCTCAAGCAGGCCCGTTTTCTTGA...GCTGTTTTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp TTAGACTTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAACATAATCCTGATCAATaGCTTATGGCGAGTTCCGGC +
Preference number: 4 (lower is better)
Translates to: LDLSAKATFLLKPMPSKEHNPDQ*LMASSG
Trigger: GCCGGAACTCGCCATAAGGCATTGATCAGGATTATG...TTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAAGTCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp CTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAAGACAACGGTCACCCTTaGCAAGAGCAAGCAAGGCTT +
Preference number: 4 (lower is better)
Translates to: LRNGTKVTCLWGFIIWDKDNGHP*QEQARL
Trigger: AAGCCTTGCTTGCTCTTGCCAAGGGTGACCGTTGTC...TTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp CTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAACTGATCAATGCCTTATaGCGAGTTCCGGCACCCTTC +
Preference number: 4 (lower is better)
Translates to: LRNGTKVTCLWGFIIWDKLINAL*RVPAPF
Trigger: GAAGGGTGCCGGAACTCGCCATAAGGCATTGATCAG...TTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp TTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAAACAGCTGGTTTCATCCAGGATaGCTTGGCAAAGAGAGATTC +
Preference number: 4 (lower is better)
Translates to: LSAKATFLLKPMPSKENSWFHPG*LGKERF
Trigger: GAATCTCTCTTTGCCAAGCCATCCTGGATGAAACCA...GCTGTTTTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCATCCGAGGATACATTaGAGGAAGGGTAGGGGCTCA +
Preference number: 4 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGHPRIH*RKGRGS
Trigger: TGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATG...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp AACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTAACACTCTGCGAAGATaGGGAAAGCTCCTGCTGGTC +
Preference number: 4 (lower is better)
Translates to: NFFLRNGTKVTCLWGFIINTLRR*GKLLLV
Trigger: GACCAGCAGGAGCTTTCCTCATCTTCGCAGAGTGTT...AATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp TATGGCGAGTTCCGGCACCCTTTTCTAAAAGTGCATCAAATCCAACAAGTATGTTCAAGAAAACGGGCCTaGTTGAGGAATTCTGATACC +
Preference number: 4 (lower is better)
Translates to: YGEFRHPFLKVHQIQQVCSRKRA*LRNSDT
Trigger: GGTATCAGAATTCCTCAAGCAGGCCCGTTTTCTTGA...ACATACTTGTTGGATTTGATGCACTTTTAGAAAAGGGTGCCGGAACTCGCCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR GCA 90 bp GCCATCGAAGGAAAACAGCTAAGAGACATTCTCCTCAGAACCTTGCAGAATAGTAATTCTGAAACACTCTaGGAAGATGAGGAAAGCTCC +
Preference number: 4 (lower is better)
Translates to: AIEGKQLRDILLRTLQNSNSETL*EDEESS
Trigger: GGAGCTTTCCTCATCTTCGCAGAGTGTTTCAGAATT...ACTATTCTGCAAGGTTCTGAGGAGAATGTCTCTTAGCTGTTTTCCTTCGATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTCGGCAAAGAAAGCTaGAGTGCTGGTGGCACACTT +
Preference number: 4 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGLGKES*SAGGTL
Trigger: AAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAG...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp AGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAACATCTCGGCAAAGAAAGCTaGAGTGCTGGTGGCACACTT +
Preference number: 4 (lower is better)
Translates to: RNGTKVTCLWGFIIWDKHLGKES*SAGGTL
Trigger: AAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAG...ATGTTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp CTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAAGTCTCCAGATGTATCTaGAGTGATGTCTTTGGCCAG +
Preference number: 4 (lower is better)
Translates to: LRNGTKVTCLWGFIIWDKVSRCI*SDVFGQ
Trigger: CTGGCCAAAGACATCACTTCAGATACATCTGGAGAC...TTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp AACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTCAAAGAAAGCTGGAGTaGTGGTGGCACACTTCACGA +
Preference number: 4 (lower is better)
Translates to: NFFLRNGTKVTCLWGFIIQRKLE*WWHTSR
Trigger: TCGTGAAGTGTGCCACCAGCACTCCAGCTTTCTTTG...AATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp TTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAAACAGCTTTCATAGTCTCCTTTaGTTTCATCCAGGATGGCTT +
Preference number: 4 (lower is better)
Translates to: LSAKATFLLKPMPSKENSFHSLL*FHPGWL
Trigger: AAGCCATCCTGGATGAAACCAAAGGAGACTATGAAA...GCTGTTTTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGGAAAACGGGCCTGCTTaGGGAATTCTGATACCATTG +
Preference number: 4 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGENGPA*GILIPL
Trigger: CAATGGTATCAGAATTCCTCAAGCAGGCCCGTTTTC...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp TCATTCATGTCAATTTCCGAACGGGAGACCATAATCCTGATCAATGCCTTATGGACATATTCCTGTTCTTaGTTTTCAAGAAAACGGGCC +
Preference number: 4 (lower is better)
Translates to: SFMSISERETIILINALWTYSCS*FSRKRA
Trigger: GGCCCGTTTTCTTGAAAATCAAGAACAGGAATATGT...CCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR TCA 90 bp GCCATCGAAGGAAAACAGCTAAGAGACATTCTCCTCAGAACCTTGCAGAATAGTTTGTCAAAATCTCAATaGGAGTGTCTTCATCTGTTC +
Preference number: 4 (lower is better)
Translates to: AIEGKQLRDILLRTLQNSLSKSQ*ECLHLF
Trigger: GAACAGATGAAGACACTCTCATTGAGATTTTGACAA...ACTATTCTGCAAGGTTCTGAGGAGAATGTCTCTTAGCTGTTTTCCTTCGATGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGGTCTCCAGATGTATCTaGAGTGATGTCTTTGGCCAG +
Preference number: 4 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGVSRCI*SDVFGQ
Trigger: CTGGCCAAAGACATCACTTCAGATACATCTGGAGAC...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGACCACGGAGTTCATCTaGATCAAACTGAGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGTTEFI*IKLSWS
Trigger: ACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGT...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp TTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATTCATCCAGGATGGCTTaGCAAAGAGAGATTCCATAC +
Preference number: 4 (lower is better)
Translates to: FLRNGTKVTCLWGFIIWDSSRMA*QREIPY
Trigger: GTATGGAATCTCTCTTTGCCAAGCCATCCTGGATGA...ATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp TTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATTGGTTTCATCCAGGATaGCTTGGCAAAGAGAGATTC +
Preference number: 4 (lower is better)
Translates to: FLRNGTKVTCLWGFIIWDWFHPG*LGKERF
Trigger: GAATCTCTCTTTGCCAAGCCATCCTGGATGAAACCA...ATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp AACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTCATCCAGGATGGCTTaGCAAAGAGAGATTCCATAC +
Preference number: 4 (lower is better)
Translates to: NFFLRNGTKVTCLWGFIISSRMA*QREIPY
Trigger: GTATGGAATCTCTCTTTGCCAAGCCATCCTGGATGA...AATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp CTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAATCATCTGCATCAAACTaGGCTGGAGTTTTTAGCATA +
Preference number: 4 (lower is better)
Translates to: LRNGTKVTCLWGFIIWDKSSASN*AGVFSI
Trigger: TATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGA...TTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp TTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATTCATCTGCATCAAACTaGGCTGGAGTTTTTAGCATA +
Preference number: 4 (lower is better)
Translates to: FLRNGTKVTCLWGFIIWDSSASN*AGVFSI
Trigger: TATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGA...ATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGAATTCTGAAACACTCTaGGAAGATGAGGAAAGCTCC +
Preference number: 4 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGNSETL*EDEESS
Trigger: GGAGCTTTCCTCATCTTCGCAGAGTGTTTCAGAATT...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR GCA 90 bp AACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTAATTCTGAAACACTCTaGGAAGATGAGGAAAGCTCC +
Preference number: 4 (lower is better)
Translates to: NFFLRNGTKVTCLWGFIINSETL*EDEESS
Trigger: GGAGCTTTCCTCATCTTCGCAGAGTGTTTCAGAATT...AATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp AGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAACATACATATTCCTGTTCTTaGTTTTCAAGAAAACGGGCC +
Preference number: 4 (lower is better)
Translates to: RNGTKVTCLWGFIIWDKHTYSCS*FSRKRA
Trigger: GGCCCGTTTTCTTGAAAATCAAGAACAGGAATATGT...ATGTTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CCA 90 bp AGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAACATTTTCATAGTCTCCTTTaGTTTCATCCAGGATGGCTT +
Preference number: 4 (lower is better)
Translates to: RNGTKVTCLWGFIIWDKHFHSLL*FHPGWL
Trigger: AAGCCATCCTGGATGAAACCAAAGGAGACTATGAAA...ATGTTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR TCA 90 bp GATGGCTTGGCAAAGAGAGATTCCATACTTCTTCTGGTAAAATACTTTGATTTCTTGTCAAAATCTCAATaGGAGTGTCTTCATCTGTTC +
Preference number: 4 (lower is better)
Translates to: DGLAKRDSILLLVKYFDFLSKSQ*ECLHLF
Trigger: GAACAGATGAAGACACTCTCATTGAGATTTTGACAA...GAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR TCA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGTTGTCAAAATCTCAATaGGAGTGTCTTCATCTGTTC +
Preference number: 4 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGLSKSQ*ECLHLF
Trigger: GAACAGATGAAGACACTCTCATTGAGATTTTGACAA...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS TCA 90 bp GGCTTTCCATTCTCCTGTAAGTACGCGGCCTTGATCTGCTGGCGCTaGGCATTGGTCCTCTTGGTAAGAATGTCAATGATGGTTGCTTCA +
Preference number: 5 (lower is better)
Translates to: GFPFSCKYAALICWR*ALVLLVRMSMMVAS
Trigger: TGAAGCAACCATCATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAATGGAAAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS TCA 90 bp GTTCCAAGTCCCTTCATGGCACCACGGAGTTCATCTGCATCAAACTaGGCTGGAGTTTTTAGCATAGCCAAAACAACCTCCTCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: VPSPFMAPRSSSASN*AGVFSIAKTTSSRW
Trigger: CCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAGGGACTTGGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS TCA 90 bp ACACTCTGCGAAGATGAGGAAAGCTCCTGCTGGTCAGAATTGTGGTaGAGACGTTCACGTCTGTCCCCTTTCTCCTTTCTCCAGCTTCAT +
Preference number: 5 (lower is better)
Translates to: TLCEDEESSCWSELW*RRSRLSPFSFLQLH
Trigger: ATGAAGCTGGAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTGACCAGCAGGAGCTTTCCTCATCTTCGCAGAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS CCA 90 bp CAGCCAAATCTTGATTCACACTCAAGTCCTGACAACGGTCACCCTTaGCAAGAGCAAGCAAGGCTTTCCGAAAGTCTCCAGATGTATCTG +
Preference number: 5 (lower is better)
Translates to: QPNLDSHSSPDNGHP*QEQARLSESLQMYL
Trigger: CAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAGGGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS TCA 90 bp CAAGAGCAAGCAAGGCTTTCCGAAAGTCTCCAGATGTATCTGAAGTaGTGTCTTTGGCCAGATCTCTTTTCAGCTCTTCTCTGTAGACTC +
Preference number: 5 (lower is better)
Translates to: QEQARLSESLQMYLK*CLWPDLFSALLCRL
Trigger: GAGTCTACAGAGAAGAGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CAA 90 bp TTAGACTTATCTGCCAAAGCAACTTTCCTACTTAAGCCCATGCCATCGAAGGAAAGAAAACGGGCCTGCTaGAGGAATTCTGATACCATT +
Preference number: 5 (lower is better)
Translates to: LDLSAKATFLLKPMPSKERKRAC*RNSDTI
Trigger: AATGGTATCAGAATTCCTCAAGCAGGCCCGTTTTCT...TTCCTTCGATGGCATGGGCTTAAGTAGGAAAGTTGCTTTGGCAGATAAGTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CAA 90 bp GATTTCATTCATGTCAATTTCCGAACGGGAGACCATAATCCTGATCAATGCCTTTCTGAAGTGATGTCTTaGGCCAGATCTCTTTTCAGC +
Preference number: 5 (lower is better)
Translates to: DFIHVNFRTGDHNPDQCLSEVMS*ARSLFS
Trigger: GCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGA...AAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171423.9
CDS-3UTR CAA 90 bp CTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAAAGAAAACGGGCCTGCTaGAGGAATTCTGATACCATT +
Preference number: 5 (lower is better)
Translates to: LRNGTKVTCLWGFIIWDKRKRAC*RNSDTI
Trigger: AATGGTATCAGAATTCCTCAAGCAGGCCCGTTTTCT...TTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CAA 90 bp TTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATTTAACCATGATAGCTTaGTGCAAGGCAGCAACATCC +
Preference number: 5 (lower is better)
Translates to: FLRNGTKVTCLWGFIIWDLTMIA*CKAATS
Trigger: GGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAA...ATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CAA 90 bp TTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATTCTGAAGTGATGTCTTaGGCCAGATCTCTTTTCAGC +
Preference number: 5 (lower is better)
Translates to: FLRNGTKVTCLWGFIIWDSEVMS*ARSLFS
Trigger: GCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGA...ATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CAA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGAGAAAACGGGCCTGCTaGAGGAATTCTGATACCATT +
Preference number: 5 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGRKRAC*RNSDTI
Trigger: AATGGTATCAGAATTCCTCAAGCAGGCCCGTTTTCT...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CAA 90 bp AGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATAAACATTTAACCATGATAGCTTaGTGCAAGGCAGCAACATCC +
Preference number: 5 (lower is better)
Translates to: RNGTKVTCLWGFIIWDKHLTMIA*CKAATS
Trigger: GGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAA...ATGTTTATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CAA 90 bp TTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGGGATTGTATCAGCCAAATCTaGATTCACACTCAAGTCCTG +
Preference number: 5 (lower is better)
Translates to: FLRNGTKVTCLWGFIIWDCISQI*IHTQVL
Trigger: CAGGACTTGAGTGTGAATCAAGATTTGGCTGATACA...ATCCCAAATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS-3UTR CAA 90 bp ATTATATGTAAACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGTTCATCCAGGATGGCTaGGCAAAGAGAGATTCCATA +
Preference number: 5 (lower is better)
Translates to: IICKLLSQEWYQSDLLMGFIQDG*AKRDSI
Trigger: TATGGAATCTCTCTTTGCCAAGCCATCCTGGATGAA...CCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTTTACATATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025561.8
ENSMUST00000235280.2
CDS-3UTR CAA 90 bp AACTTCTTTCTCAGGAATGGTACCAAAGTGACTTGCTTATGGGGCTTTATAATTTGTATCAGCCAAATCTaGATTCACACTCAAGTCCTG +
Preference number: 5 (lower is better)
Translates to: NFFLRNGTKVTCLWGFIICISQI*IHTQVL
Trigger: CAGGACTTGAGTGTGAATCAAGATTTGGCTGATACA...AATTATAAAGCCCCATAAGCAAGTCACTTTGGTACCATTCCTGAGAAAGAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS TCA 72 bp TTCTCCTGTAAGTACGCGGCCTTGATCTGCTGGCGCTaGGCATTGGTCCTCTTGGTAAGAATGTCAATGATG +
Preference number: 6 (lower is better)
Translates to: FSCKYAALICWR*ALVLLVRMSMM
Trigger: CATCATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS TCA 72 bp GAAGATGAGGAAAGCTCCTGCTGGTCAGAATTGTGGTaGAGACGTTCACGTCTGTCCCCTTTCTCCTTTCTC +
Preference number: 6 (lower is better)
Translates to: EDEESSCWSELW*RRSRLSPFSFL
Trigger: GAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTGACCAGCAGGAGCTTTCCTCATCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS CAA 90 bp TTCTCCAGCTTCATACAAAGCCCTGGCATCTGTATCAGCCAAATCTaGATTCACACTCAAGTCCTGACAACGGTCACCCTTGGCAAGAGC +
Preference number: 6 (lower is better)
Translates to: FSSFIQSPGICISQI*IHTQVLTTVTLGKS
Trigger: GCTCTTGCCAAGGGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGGGCTTTGTATGAAGCTGGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS TCA 72 bp CCCTTCATGGCACCACGGAGTTCATCTGCATCAAACTaGGCTGGAGTTTTTAGCATAGCCAAAACAACCTCC +
Preference number: 6 (lower is better)
Translates to: PFMAPRSSSASN*AGVFSIAKTTS
Trigger: GGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS TCA 72 bp GCAAGGCTTTCCGAAAGTCTCCAGATGTATCTGAAGTaGTGTCTTTGGCCAGATCTCTTTTCAGCTCTTCTC +
Preference number: 6 (lower is better)
Translates to: ARLSESLQMYLK*CLWPDLFSALL
Trigger: GAGAAGAGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS TCA 72 bp AGCAAGCAAGGCTTTCCGAAAGTCTCCAGATGTATCTaGAGTGATGTCTTTGGCCAGATCTCTTTTCAGCTC +
Preference number: 6 (lower is better)
Translates to: SKQGFPKVSRCI*SDVFGQISFQL
Trigger: GAGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS CAA 72 bp TTCATACAAAGCCCTGGCATCTGTATCAGCCAAATCTaGATTCACACTCAAGTCCTGACAACGGTCACCCTT +
Preference number: 6 (lower is better)
Translates to: FIQSPGICISQI*IHTQVLTTVTL
Trigger: AAGGGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGGGCTTTGTATGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS GCA 72 bp CATGTTGACTGTACTTTCCGTAATTCTGAAACACTCTaGGAAGATGAGGAAAGCTCCTGCTGGTCAGAATTG +
Preference number: 6 (lower is better)
Translates to: HVDCTFRNSETL*EDEESSCWSEL
Trigger: CAATTCTGACCAGCAGGAGCTTTCCTCATCTTCGCAGAGTGTTTCAGAATTACGGAAAGTACAGTCAACATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS CAA 72 bp ATGGTTGCTTCATCCACACCTTTAACCATGATAGCTTaGTGCAAGGCAGCAACATCCGAGGATACATTGAAG +
Preference number: 6 (lower is better)
Translates to: MVASSTPLTMIA*CKAATSEDTLK
Trigger: CTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAGGTGTGGATGAAGCAACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS CAA 90 bp AATGTCACCCTTCAGTTCCAGATCCAGAGCTTTGTTCATGTCATGTaGACTGTACTTTCCGTAATTCTGAAACACTCTGCGAAGATGAGG +
Preference number: 6 (lower is better)
Translates to: NVTLQFQIQSFVHVM*TVLSVILKHSAKMR
Trigger: CCTCATCTTCGCAGAGTGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS CAA 72 bp CTTCAGTTCCAGATCCAGAGCTTTGTTCATGTCATGTaGACTGTACTTTCCGTAATTCTGAAACACTCTGCG +
Preference number: 6 (lower is better)
Translates to: LQFQIQSFVHVM*TVLSVILKHSA
Trigger: CGCAGAGTGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS GCA 72 bp AGCATTGGTCCTCTTGGTAAGAATGTCAATGATGGTTaGTTCATCCACACCTTTAACCATGATAGCTTTGTG +
Preference number: 6 (lower is better)
Translates to: SIGPLGKNVNDG*FIHTFNHDSFV
Trigger: CACAAAGCTATCATGGTTAAAGGTGTGGATGAAGCAACCATCATTGACATTCTTACCAAGAGGACCAATGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS CAA 90 bp ATCTCTTTTCAGCTCTTCTCTGTAGACTCTATTAATCTCTCTGATTaGTTCGTTAGATCTTGTTGTCAAAATCTCAATGAGAGTGTCTTC +
Preference number: 6 (lower is better)
Translates to: ISFQLFSVDSINLSD*FVRSCCQNLNESVF
Trigger: GAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGAGCTGAAAAGAGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2
CDS CAA 72 bp CAGCTCTTCTCTGTAGACTCTATTAATCTCTCTGATTaGTTCGTTAGATCTTGTTGTCAAAATCTCAATGAG +
Preference number: 6 (lower is better)
Translates to: QLFSVDSINLSD*FVRSCCQNLNE
Trigger: CTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGAGCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025561.8
ENSMUST00000171423.9
ENSMUST00000235280.2