RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANO2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038115

Ensembl transcript IDs: ENSMUST00000159984.2, ENSMUST00000160496.8, ENSMUST00000161619.8

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCTGGCTCCGGCCTGATGGTGCAGAGCTGGCTGCACGGCTCCTCCTaGTCCGATCCCCACCTCCCTGGCTCCTCTGGGTGGGCTCATCAG +
Preference number: 1 (lower is better)
Translates to: AGSGLMVQSWLHGSS*SDPHLPGSSGWAHQ
Trigger: CTGATGAGCCCACCCAGAGGAGCCAGGGAGGTGGGGATCGGAGCAGGAGGAGCCGTGCAGCCAGCTCTGCACCATCAGGCCGGAGCCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 90 bp GCAGAGCTGGCTGCACGGCTCCTCCTGCTCCGATCCCCACCTCCCTaGCTCCTCTGGGTGGGCTCATCAGCCAGCTTGACCTTCTCATGC +
Preference number: 1 (lower is better)
Translates to: AELAARLLLLRSPPP*LLWVGSSASLTFSC
Trigger: GCATGAGAAGGTCAAGCTGGCTGATGAGCCCACCCAGAGGAGCCAGGGAGGTGGGGATCGGAGCAGGAGGAGCCGTGCAGCCAGCTCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 90 bp CATACATTGGTGTGCTGGGACCCTGAGGATGCTATGCTGCCTGGCTaGCTCCGGCCTGATGGTGCAGAGCTGGCTGCACGGCTCCTCCTG +
Preference number: 1 (lower is better)
Translates to: HTLVCWDPEDAMLPG*LRPDGAELAARLLL
Trigger: CAGGAGGAGCCGTGCAGCCAGCTCTGCACCATCAGGCCGGAGCCAGCCAGGCAGCATAGCATCCTCAGGGTCCCAGCACACCAATGTATG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR GCA 90 bp GCCATAACATGCCCTCCTCTGCTGCCAATGACTCATACATTGGTGTaGTGGGACCCTGAGGATGCTATGCTGCCTGGCTGGCTCCGGCCT +
Preference number: 1 (lower is better)
Translates to: AITCPPLLPMTHTLV*WDPEDAMLPGWLRP
Trigger: AGGCCGGAGCCAGCCAGGCAGCATAGCATCCTCAGGGTCCCAGCACACCAATGTATGAGTCATTGGCAGCAGAGGAGGGCATGTTATGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 90 bp ATAACATGCCCTCCTCTGCTGCCAATGACTCATACATTGGTGTGCTaGGACCCTGAGGATGCTATGCTGCCTGGCTGGCTCCGGCCTGAT +
Preference number: 1 (lower is better)
Translates to: ITCPPLLPMTHTLVC*DPEDAMLPGWLRPD
Trigger: ATCAGGCCGGAGCCAGCCAGGCAGCATAGCATCCTCAGGGTCCCAGCACACCAATGTATGAGTCATTGGCAGCAGAGGAGGGCATGTTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR GCA 90 bp CCCTGGCTCCTCTGGGTGGGCTCATCAGCCAGCTTGACCTTCTCATaGTCCTCCTTCAGAAAGAAGTCTACCAGCAAGCTCTTCTCTTTC +
Preference number: 1 (lower is better)
Translates to: PWLLWVGSSASLTFS*SSFRKKSTSKLFSF
Trigger: GAAAGAGAAGAGCTTGCTGGTAGACTTCTTTCTGAAGGAGGAGCATGAGAAGGTCAAGCTGGCTGATGAGCCCACCCAGAGGAGCCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR GCA 90 bp CACCCGGACATTGGAGCGTGTGGCCTTGTTGAGAGACAGGGCAGCTaGAGTTGTGATCCGATACACAATGACCCCAAAGACAATGGAGAA +
Preference number: 1 (lower is better)
Translates to: HPDIGACGLVERQGS*SCDPIHNDPKDNGE
Trigger: TTCTCCATTGTCTTTGGGGTCATTGTGTATCGGATCACAACTGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCTCCAATGTCCGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR TCA 90 bp AGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGGGGGTGTaGTCAGTTAGATGGGTGCTAGGATGGATGGGACCCTCACTGAAC +
Preference number: 1 (lower is better)
Translates to: SVSERLFQGDSRKGV*SVRWVLGWMGPSLN
Trigger: GTTCAGTGAGGGTCCCATCCATCCTAGCACCCATCTAACTGATCACACCCCCTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
3UTR GCA 90 bp ACCACCAGGTCCAGTGGCCACAGAAATCAATCCTGTAACTTCATTTaGATCTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTG +
Preference number: 1 (lower is better)
Translates to: TTRSSGHRNQSCNFI*ICPALLWPHSQVSL
Trigger: CAGAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTACAGGATTGATTTCTGTGGCCACTGGACCTGGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
3UTR CCA 90 bp TCCTTCAGAAAGAAGTCTACCAGCAAGCTCTTCTCTTTCTTGATCTaGTCGCTGATGTCAGTGGGGATATCCGGAATCATCCAGTCCACC +
Preference number: 1 (lower is better)
Translates to: SFRKKSTSKLFSFLI*SLMSVGISGIIQST
Trigger: GGTGGACTGGATGATTCCGGATATCCCCACTGACATCAGCGACCAGATCAAGAAAGAGAAGAGCTTGCTGGTAGACTTCTTTCTGAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR TCA 90 bp TCGATAATCTTTGAACCTGCAAAACTGAACCTCCTGGTCGAACTGTaGGTTTTCAGGCTGTGTTCCCTCCTTCAGCTGACTGACGTTGAA +
Preference number: 1 (lower is better)
Translates to: SIIFEPAKLNLLVEL*VFRLCSLLQLTDVE
Trigger: TTCAACGTCAGTCAGCTGAAGGAGGGAACACAGCCTGAAAACTCACAGTTCGACCAGGAGGTTCAGTTTTGCAGGTTCAAAGATTATCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 90 bp AGACCAGTACTGCTTGGAAAACTCATAAGGGTTTGGTGCCCATGGTaGTTCTCGATAATCTTTGAACCTGCAAAACTGAACCTCCTGGTC +
Preference number: 1 (lower is better)
Translates to: RPVLLGKLIRVWCPW*FSIIFEPAKLNLLV
Trigger: GACCAGGAGGTTCAGTTTTGCAGGTTCAAAGATTATCGAGAACCACCATGGGCACCAAACCCTTATGAGTTTTCCAAGCAGTACTGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 90 bp AACAGACCAGTACTGCTTGGAAAACTCATAAGGGTTTGGTGCCCATaGTGGTTCTCGATAATCTTTGAACCTGCAAAACTGAACCTCCTG +
Preference number: 1 (lower is better)
Translates to: NRPVLLGKLIRVWCP*WFSIIFEPAKLNLL
Trigger: CAGGAGGTTCAGTTTTGCAGGTTCAAAGATTATCGAGAACCACCATGGGCACCAAACCCTTATGAGTTTTCCAAGCAGTACTGGTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 90 bp CAGGGCAATCATAAACAAGATGGAGGCAAAGTTCATCAAGTATCCTaGGAAACGATCTTTCCAAGTCAGTTTATCTTCATCATCCCTGTG +
Preference number: 1 (lower is better)
Translates to: QGNHKQDGGKVHQVS*ETIFPSQFIFIIPV
Trigger: CACAGGGATGATGAAGATAAACTGACTTGGAAAGATCGTTTCCCAGGATACTTGATGAACTTTGCCTCCATCTTGTTTATGATTGCCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CAA 90 bp CGATCCCCACCTCCCTGGCTCCTCTGGGTGGGCTCATCAGCCAGCTaGACCTTCTCATGCTCCTCCTTCAGAAAGAAGTCTACCAGCAAG +
Preference number: 2 (lower is better)
Translates to: RSPPPWLLWVGSSAS*TFSCSSFRKKSTSK
Trigger: CTTGCTGGTAGACTTCTTTCTGAAGGAGGAGCATGAGAAGGTCAAGCTGGCTGATGAGCCCACCCAGAGGAGCCAGGGAGGTGGGGATCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CCA 90 bp TGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCCGATCCCCACCTCCCTaGCTCCTCTGGGTGGGCTCA +
Preference number: 2 (lower is better)
Translates to: WTGPFFLTTRSSGHRNQSRSPPP*LLWVGS
Trigger: TGAGCCCACCCAGAGGAGCCAGGGAGGTGGGGATCG...GGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CAA 90 bp CGTTTCGCCATAACATGCCCTCCTCTGCTGCCAATGACTCATACATaGGTGTGCTGGGACCCTGAGGATGCTATGCTGCCTGGCTGGCTC +
Preference number: 2 (lower is better)
Translates to: RFAITCPPLLPMTHT*VCWDPEDAMLPGWL
Trigger: GAGCCAGCCAGGCAGCATAGCATCCTCAGGGTCCCAGCACACCAATGTATGAGTCATTGGCAGCAGAGGAGGGCATGTTATGGCGAAACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CAA 90 bp GCTGTTGCAGTCACTGTCACCCGGACATTGGAGCGTGTGGCCTTGTaGAGAGACAGGGCAGCTGCAGTTGTGATCCGATACACAATGACC +
Preference number: 2 (lower is better)
Translates to: AVAVTVTRTLERVAL*RDRAAAVVIRYTMT
Trigger: GGTCATTGTGTATCGGATCACAACTGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCTCCAATGTCCGGGTGACAGTGACTGCAACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CAA 90 bp ACTGCTGTTGCAGTCACTGTCACCCGGACATTGGAGCGTGTGGCCTaGTTGAGAGACAGGGCAGCTGCAGTTGTGATCCGATACACAATG +
Preference number: 2 (lower is better)
Translates to: TAVAVTVTRTLERVA*LRDRAAAVVIRYTM
Trigger: CATTGTGTATCGGATCACAACTGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCTCCAATGTCCGGGTGACAGTGACTGCAACAGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR TCA 90 bp TTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGCGTGTGGCCTTGTTaGGAGACAGGGCAGCTGCAG +
Preference number: 2 (lower is better)
Translates to: LWPHSQVSLRGYSRVTVGSVWPC*ETGQLQ
Trigger: CTGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCT...TCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR TCA 90 bp TCAAACCAAATTCCAATGTCTTTGGTCCTCACAGCATCTGGGCGTCTCAGTTCTGGATGCACAGCTCCATaGGACAGCCTCCCGGAGCAC +
Preference number: 2 (lower is better)
Translates to: SNQIPMSLVLTASGRLSSGCTAP*DSLPEH
Trigger: GTGCTCCGGGAGGCTGTCTCATGGAGCTGTGCATCC...AGAACTGAGACGCCCAGATGCTGTGAGGACCAAAGACATTGGAATTTGGTTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR TCA 90 bp TCAAACCAAATTCCAATGTCTTTGGTCCTCACAGCATCTGGGCGTCTCAGTTCTAGCGTGTGGCCTTGTTaGGAGACAGGGCAGCTGCAG +
Preference number: 2 (lower is better)
Translates to: SNQIPMSLVLTASGRLSSSVWPC*ETGQLQ
Trigger: CTGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCT...AGAACTGAGACGCCCAGATGCTGTGAGGACCAAAGACATTGGAATTTGGTTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR GCA 90 bp CCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATGAGAGACAGGGCAGCTaGAGTTGTGATCCGATACAC +
Preference number: 2 (lower is better)
Translates to: PGQDLSSLPPGPVATEINERQGS*SCDPIH
Trigger: GTGTATCGGATCACAACTGCAGCTGCCCTGTCTCTC...ATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR GCA 90 bp ATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGATGATGACTGCTGTTaGAGTCACTGTCACCCGGAC +
Preference number: 2 (lower is better)
Translates to: IGAADKPGQDLSSLPPGPDDDCC*SHCHPD
Trigger: GTCCGGGTGACAGTGACTGCAACAGCAGTCATCATC...TGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CCA 90 bp AGCCATGTAGTGTCCCGTTGTGGCTATAGGAGTACTGGTACACAAGGCGGGGGATCTGGACGTTTTGAGTaGTCAGGGTCACTTTCTCCA +
Preference number: 2 (lower is better)
Translates to: SHVVSRCGYRSTGTQGGGSGRFE*SGSLSP
Trigger: TGGAGAAAGTGACCCTGACCACTCAAAACGTCCAGA...TCCCCCGCCTTGTGTACCAGTACTCCTATAGCCACAACGGGACACTACATGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CCA 90 bp TTGATCTGGTCGCTGATGTCAGTGGGGATATCCGGAATCATCCAGTCCACCAGGAAACTCATAAGGGTTTaGTGCCCATGGTGGTTCTCG +
Preference number: 2 (lower is better)
Translates to: LIWSLMSVGISGIIQSTRKLIRV*CPWWFS
Trigger: CGAGAACCACCATGGGCACCAAACCCTTATGAGTTT...CCTGGTGGACTGGATGATTCCGGATATCCCCACTGACATCAGCGACCAGATCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR GCA 90 bp ATATGCATCCTTGTCATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCGATGATGACTGCTGTTaGAGTCACTGTCACCCGGAC +
Preference number: 2 (lower is better)
Translates to: ICILVIGAADKPGQDLSSDDDCC*SHCHPD
Trigger: GTCCGGGTGACAGTGACTGCAACAGCAGTCATCATC...GGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CAA 90 bp TGCTCCTCCTTCAGAAAGAAGTCTACCAGCAAGCTCTTCTCTTTCTaGATCTGGTCGCTGATGTCAGTGGGGATATCCGGAATCATCCAG +
Preference number: 2 (lower is better)
Translates to: CSSFRKKSTSKLFSF*IWSLMSVGISGIIQ
Trigger: CTGGATGATTCCGGATATCCCCACTGACATCAGCGACCAGATCAAGAAAGAGAAGAGCTTGCTGGTAGACTTCTTTCTGAAGGAGGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR GCA 90 bp GTTTGGTGCCCATGGTGGTTCTCGATAATCTTTGAACCTGCAAAACTGAACCTCGAGAGACAGGGCAGCTaGAGTTGTGATCCGATACAC +
Preference number: 2 (lower is better)
Translates to: VWCPWWFSIIFEPAKLNLERQGS*SCDPIH
Trigger: GTGTATCGGATCACAACTGCAGCTGCCCTGTCTCTC...GAGGTTCAGTTTTGCAGGTTCAAAGATTATCGAGAACCACCATGGGCACCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR GCA 90 bp TTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAGAGGTTGATGATGACTaGTGTTGCAGTCACTGTCAC +
Preference number: 2 (lower is better)
Translates to: LWPHSQVSLRGYSRVTVGEVDDD*CCSHCH
Trigger: GTGACAGTGACTGCAACAGCAGTCATCATCAACCTC...TCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR TCA 90 bp GTTTGGTGCCCATGGTGGTTCTCGATAATCTTTGAACCTGCAAAACTGAACCTCCAAAACCAAACTGGATaGTCATTTCCATGTACTCAG +
Preference number: 2 (lower is better)
Translates to: VWCPWWFSIIFEPAKLNLQNQTG*SFPCTQ
Trigger: CTGAGTACATGGAAATGATCATCCAGTTTGGTTTTG...GAGGTTCAGTTTTGCAGGTTCAAAGATTATCGAGAACCACCATGGGCACCAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CAA 90 bp TCGGAGGTGACAGCAATGACAAAAGCATTAATGATGACGGAGAACTaGCCAATTCCAGAGAGAATGTCAAACCAAATTCCAATGTCTTTG +
Preference number: 2 (lower is better)
Translates to: SEVTAMTKALMMTEN*PIPERMSNQIPMSL
Trigger: CAAAGACATTGGAATTTGGTTTGACATTCTCTCTGGAATTGGCAAGTTCTCCGTCATCATTAATGCTTTTGTCATTGCTGTCACCTCCGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CCA 90 bp GGGACCCTCACTGAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGAAACATCACTAGGTTCTaGAAGATGATAACAAAGGCC +
Preference number: 2 (lower is better)
Translates to: GTLTELLSPKMMVKNKKGNITRF*KMITKA
Trigger: GGCCTTTGTTATCATCTTCCAGAACCTAGTGATGTT...TCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTCAGTGAGGGTCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 72 bp TGCTGCCTGGCTGGCTCCGGCCTGATGGTGCAGAGCTaGCTGCACGGCTCCTCCTGCTCCGATCCCCACCTC +
Preference number: 3 (lower is better)
Translates to: CCLAGSGLMVQS*LHGSSCSDPHL
Trigger: GAGGTGGGGATCGGAGCAGGAGGAGCCGTGCAGCCAGCTCTGCACCATCAGGCCGGAGCCAGCCAGGCAGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 72 bp GTGTGCTGGGACCCTGAGGATGCTATGCTGCCTGGCTaGCTCCGGCCTGATGGTGCAGAGCTGGCTGCACGG +
Preference number: 3 (lower is better)
Translates to: VCWDPEDAMLPG*LRPDGAELAAR
Trigger: CCGTGCAGCCAGCTCTGCACCATCAGGCCGGAGCCAGCCAGGCAGCATAGCATCCTCAGGGTCCCAGCACAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CAA 90 bp GTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGGAGCGTGTGGCCTTGTaGAGAGACAGGGCAGCTGCA +
Preference number: 3 (lower is better)
Translates to: VAPFTSVSERLFQGDSRKERVAL*RDRAAA
Trigger: TGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCTC...CTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CAA 90 bp AGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACGAGCGTGTGGCCTTGTaGAGAGACAGGGCAGCTGCA +
Preference number: 3 (lower is better)
Translates to: SLVVAPFTSVSERLFQGDERVAL*RDRAAA
Trigger: TGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCTC...GTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CAA 90 bp TTGATCTGGTCGCTGATGTCAGTGGGGATATCCGGAATCATCCAGTCCACCAGGTTGGAGCGTGTGGCCTaGTTGAGAGACAGGGCAGCT +
Preference number: 3 (lower is better)
Translates to: LIWSLMSVGISGIIQSTRLERVA*LRDRAA
Trigger: AGCTGCCCTGTCTCTCAACAAGGCCACACGCTCCAA...CCTGGTGGACTGGATGATTCCGGATATCCCCACTGACATCAGCGACCAGATCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CAA 90 bp ATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCATTGGAGCGTGTGGCCTaGTTGAGAGACAGGGCAGCT +
Preference number: 3 (lower is better)
Translates to: IGAADKPGQDLSSLPPGPLERVA*LRDRAA
Trigger: AGCTGCCCTGTCTCTCAACAAGGCCACACGCTCCAA...TGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CAA 90 bp ATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAACTGTCACCCGGACATaGGAGCGTGTGGCCTTGTTG +
Preference number: 3 (lower is better)
Translates to: IGAADKPGQDLSSLPPGPTVTRT*ERVALL
Trigger: CAACAAGGCCACACGCTCCAATGTCCGGGTGACAGT...TGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR TCA 72 bp GAGAGGTTATTCCAGGGTGACAGTAGGAAGGGGGTGTaGTCAGTTAGATGGGTGCTAGGATGGATGGGACCC +
Preference number: 3 (lower is better)
Translates to: ERLFQGDSRKGV*SVRWVLGWMGP
Trigger: GGGTCCCATCCATCCTAGCACCCATCTAACTGATCACACCCCCTTCCTACTGTCACCCTGGAATAACCTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
3UTR GCA 72 bp CTCTGGGTGGGCTCATCAGCCAGCTTGACCTTCTCATaGTCCTCCTTCAGAAAGAAGTCTACCAGCAAGCTC +
Preference number: 3 (lower is better)
Translates to: LWVGSSASLTFS*SSFRKKSTSKL
Trigger: GAGCTTGCTGGTAGACTTCTTTCTGAAGGAGGAGCATGAGAAGGTCAAGCTGGCTGATGAGCCCACCCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CAA 90 bp AGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCTTCGGAACCTCGATTTaGGTAAGCCACTTGGCCACA +
Preference number: 3 (lower is better)
Translates to: SCRQTWTGPFFLTTRSSGFGTSI*VSHLAT
Trigger: TGTGGCCAAGTGGCTTACCAAAATCGAGGTTCCGAA...GCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR GCA 72 bp ATTGGAGCGTGTGGCCTTGTTGAGAGACAGGGCAGCTaGAGTTGTGATCCGATACACAATGACCCCAAAGAC +
Preference number: 3 (lower is better)
Translates to: IGACGLVERQGS*SCDPIHNDPKD
Trigger: GTCTTTGGGGTCATTGTGTATCGGATCACAACTGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCTCCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CAA 90 bp ATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCATTCGGAACCTCGATTTaGGTAAGCCACTTGGCCACA +
Preference number: 3 (lower is better)
Translates to: IGAADKPGQDLSSLPPGPFGTSI*VSHLAT
Trigger: TGTGGCCAAGTGGCTTACCAAAATCGAGGTTCCGAA...TGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 72 bp AGGCCAGACGGGCAGACAAAACAGACCAGTACTGCTTaGAAAACTCATAAGGGTTTGGTGCCCATGGTGGTT +
Preference number: 3 (lower is better)
Translates to: RPDGQTKQTSTA*KTHKGLVPMVV
Trigger: AACCACCATGGGCACCAAACCCTTATGAGTTTTCCAAGCAGTACTGGTCTGTTTTGTCTGCCCGTCTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR-3UTR CAA 90 bp GTCGCTGATGTCAGTGGGGATATCCGGAATCATCCAGTCCACCAGGACACTCAGCCAATCTCAAAGATATaGTTCTGGATCAGCTGCTTG +
Preference number: 3 (lower is better)
Translates to: VADVSGDIRNHPVHQDTQPISKI*FWISCL
Trigger: CAAGCAGCTGATCCAGAACAATATCTTTGAGATTGG...CTGAGTGTCCTGGTGGACTGGATGATTCCGGATATCCCCACTGACATCAGCGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR TCA 72 bp AAGGGTTTGGTGCCCATGGTGGTTCTCGATAATCTTTaGACCTGCAAAACTGAACCTCCTGGTCGAACTGTG +
Preference number: 3 (lower is better)
Translates to: KGLVPMVVLDNL*TCKTEPPGRTV
Trigger: CACAGTTCGACCAGGAGGTTCAGTTTTGCAGGTTCAAAGATTATCGAGAACCACCATGGGCACCAAACCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR GCA 72 bp GGCCACAGAAATCAATCCTGTAACTTCATTTGCATCTaGCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCT +
Preference number: 3 (lower is better)
Translates to: GHRNQSCNFICI*PALLWPHSQVS
Trigger: AGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTACAGGATTGATTTCTGTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
3UTR CCA 72 bp TATATGCATCCTTGTCATAGGAGCTGCAGACAAACCTaGACAGGACCTTTCTTCCTTACCACCAGGTCCAGT +
Preference number: 3 (lower is better)
Translates to: YMHPCHRSCRQT*TGPFFLTTRSS
Trigger: ACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCATATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
3UTR-3UTR CAA 90 bp TGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTTGAGCAAGAAAGCTTaGAGGATCAACCGTTCTTCA +
Preference number: 3 (lower is better)
Translates to: WTGPFFLTTRSSGHRNQSLSKKA*RINRSS
Trigger: TGAAGAACGGTTGATCCTCAAAGCTTTCTTGCTCAA...GGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR GCA 72 bp GGTGAGTTGCATTATATGCATCCTTGTCATAGGAGCTaGAGACAAACCTGGACAGGACCTTTCTTCCTTACC +
Preference number: 3 (lower is better)
Translates to: GELHYMHPCHRS*RQTWTGPFFLT
Trigger: GGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCATATAATGCAACTCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
3UTR GCA 72 bp AGACCAGTACTGCTTGGAAAACTCATAAGGGTTTGGTaGCCATGGTGGTTCTCGATAATCTTTGAACCTGCA +
Preference number: 3 (lower is better)
Translates to: RPVLLGKLIRVW*PWWFSIIFEPA
Trigger: TGCAGGTTCAAAGATTATCGAGAACCACCATGGGCACCAAACCCTTATGAGTTTTCCAAGCAGTACTGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR GCA 72 bp CAGAACTTGCATAAAACGGTGGTGAGTTGCATTATATaGATCCTTGTCATAGGAGCTGCAGACAAACCTGGA +
Preference number: 3 (lower is better)
Translates to: QNLHKTVVSCII*ILVIGAADKPG
Trigger: TCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCATATAATGCAACTCACCACCGTTTTATGCAAGTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
3UTR CCA 72 bp CTGCTTGGAAAACTCATAAGGGTTTGGTGCCCATGGTaGTTCTCGATAATCTTTGAACCTGCAAAACTGAAC +
Preference number: 3 (lower is better)
Translates to: LLGKLIRVWCPW*FSIIFEPAKLN
Trigger: GTTCAGTTTTGCAGGTTCAAAGATTATCGAGAACCACCATGGGCACCAAACCCTTATGAGTTTTCCAAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 72 bp GTACTGCTTGGAAAACTCATAAGGGTTTGGTGCCCATaGTGGTTCTCGATAATCTTTGAACCTGCAAAACTG +
Preference number: 3 (lower is better)
Translates to: VLLGKLIRVWCP*WFSIIFEPAKL
Trigger: CAGTTTTGCAGGTTCAAAGATTATCGAGAACCACCATGGGCACCAAACCCTTATGAGTTTTCCAAGCAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 72 bp AACAGACCAGTACTGCTTGGAAAACTCATAAGGGTTTaGTGCCCATGGTGGTTCTCGATAATCTTTGAACCT +
Preference number: 3 (lower is better)
Translates to: NRPVLLGKLIRV*CPWWFSIIFEP
Trigger: AGGTTCAAAGATTATCGAGAACCACCATGGGCACCAAACCCTTATGAGTTTTCCAAGCAGTACTGGTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
3UTR CCA 72 bp CATAAACAAGATGGAGGCAAAGTTCATCAAGTATCCTaGGAAACGATCTTTCCAAGTCAGTTTATCTTCATC +
Preference number: 3 (lower is better)
Translates to: HKQDGGKVHQVS*ETIFPSQFIFI
Trigger: GATGAAGATAAACTGACTTGGAAAGATCGTTTCCCAGGATACTTGATGAACTTTGCCTCCATCTTGTTTATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp CTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGTCCCTGGCCAGCACCTaGCATGGGGCGTGGATCCGG +
Preference number: 4 (lower is better)
Translates to: LPSLVVAPFTSVSERLFQSLAST*HGAWIR
Trigger: CCGGATCCACGCCCCATGGCAGGTGCTGGCCAGGGA...CTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp CCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCAGGGCCCCCGCCATaGCGCTCCTTGCCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: PGQDLSSLPPGPVATEINPGPPP*RSLPVS
Trigger: GGAGACAGGCAAGGAGCGCCATGGCGGGGGCCCTGG...ATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp CAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGGGCCCTGGCTTCCTCTaGCCACGGTCCGAGAACTCA +
Preference number: 4 (lower is better)
Translates to: QTNLDRTFLPYHQVQWPQGPGFL*PRSENS
Trigger: TGAGTTCTCGGACCGTGGCCAGAGGAAGCCAGGGCC...CTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp AACAGACCAGTACTGCTTGGAAAACTCATAAGGGTTTGGTGCCCATGGTGGTTCCCAGGGCCCCCGCCATaGCGCTCCTTGCCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: NRPVLLGKLIRVWCPWWFPGPPP*RSLPVS
Trigger: GGAGACAGGCAAGGAGCGCCATGGCGGGGGCCCTGG...GAACCACCATGGGCACCAAACCCTTATGAGTTTTCCAAGCAGTACTGGTCTGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp CAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAGAACTCTGCTTCCCTaGCCAGCACCTGCCATGGGG +
Preference number: 4 (lower is better)
Translates to: QTNLDRTFLPYHQVQWPQRTLLP*PAPAMG
Trigger: CCCCATGGCAGGTGCTGGCCAGGGAAGCAGAGTTCT...CTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp ATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCACCTCCCTGGCTCCTCTaGGTGGGCTCATCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: IGAADKPGQDLSSLPPGPPPWLL*VGSSAS
Trigger: GCTGGCTGATGAGCCCACCCAGAGGAGCCAGGGAGG...TGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
3UTR CAA 72 bp GCAGTCACTGTCACCCGGACATTGGAGCGTGTGGCCTaGTTGAGAGACAGGGCAGCTGCAGTTGTGATCCGA +
Preference number: 4 (lower is better)
Translates to: AVTVTRTLERVA*LRDRAAAVVIR
Trigger: TCGGATCACAACTGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCTCCAATGTCCGGGTGACAGTGACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp TGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCGGATGCACAGCTCCATaGGACAGCCTCCCGGAGCAC +
Preference number: 4 (lower is better)
Translates to: WTGPFFLTTRSSGHRNQSGCTAP*DSLPEH
Trigger: GTGCTCCGGGAGGCTGTCTCATGGAGCTGTGCATCC...GGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR GCA 90 bp CTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGCGCCATGGCGCTCCTTaGCTGTCTCCCCATTGGAGA +
Preference number: 4 (lower is better)
Translates to: LPSLVVAPFTSVSERLFQRHGAP*LSPHWR
Trigger: TCTCCAATGGGGAGACAGGCAAGGAGCGCCATGGCG...CTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp GCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACACCATGTTTGGGGCCCTaGCTTCCTCTGGCCACGGTC +
Preference number: 4 (lower is better)
Translates to: ALLWPHSQVSLRGYSRVTPCLGP*LPLATV
Trigger: GACCGTGGCCAGAGGAAGCCAGGGCCCCAAACATGG...TGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp CTTCCTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGGGCCAGCACCTGCCATaGGGCGTGGATCCGGACAAA +
Preference number: 4 (lower is better)
Translates to: LPFGDTLKPVPSRRGTTVGQHLP*GVDPDK
Trigger: TTTGTCCGGATCCACGCCCCATGGCAGGTGCTGGCC...CACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp GGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTAGCGTGTGGCCTTGTTaGGAGACAGGGCAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: GQDLSSLPPGPVATEINPSVWPC*ETGQLQ
Trigger: CTGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCT...AGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp GGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTAGAACTCTGCTTCCCTaGCCAGCACCTGCCATGGGG +
Preference number: 4 (lower is better)
Translates to: GQDLSSLPPGPVATEINPRTLLP*PAPAMG
Trigger: CCCCATGGCAGGTGCTGGCCAGGGAAGCAGAGTTCT...AGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp TTGATCTGGTCGCTGATGTCAGTGGGGATATCCGGAATCATCCAGTCCACCAGGTCCCACAGGCTGAGCTaGGGTTCCAATAGTCACAGG +
Preference number: 4 (lower is better)
Translates to: LIWSLMSVGISGIIQSTRSHRLS*GSNSHR
Trigger: CCTGTGACTATTGGAACCTCAGCTCAGCCTGTGGGA...CCTGGTGGACTGGATGATTCCGGATATCCCCACTGACATCAGCGACCAGATCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp CTTCCATGCGGTAACCGTCGAACACGTAGACATAGCTTCCAGGTCTGCCCACAAGGATTGTCAAACAGATaGCTGGCCCGTGCAGTCCCA +
Preference number: 4 (lower is better)
Translates to: LPCGNRRTRRHSFQVCPQGLSNR*LARAVP
Trigger: TGGGACTGCACGGGCCAGTCATCTGTTTGACAATCC...TTGTGGGCAGACCTGGAAGCTATGTCTACGTGTTCGACGGTTACCGCATGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp AGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGATTGTCAAACAGATaGCTGGCCCGTGCAGTCCCA +
Preference number: 4 (lower is better)
Translates to: RSCRQTWTGPFFLTTRSSGLSNR*LARAVP
Trigger: TGGGACTGCACGGGCCAGTCATCTGTTTGACAATCC...ACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp CACAATGACCCCAAAGACAATGGAGAACGTCAGGGCAATCATAAACAAGATGGATCCCTGGCCAGCACCTaGCATGGGGCGTGGATCCGG +
Preference number: 4 (lower is better)
Translates to: HNDPKDNGERQGNHKQDGSLAST*HGAWIR
Trigger: CCGGATCCACGCCCCATGGCAGGTGCTGGCCAGGGA...TCCATCTTGTTTATGATTGCCCTGACGTTCTCCATTGTCTTTGGGGTCATTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp TTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAACTGCTGCCCATGTTTaGGGCCCTGGCTTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: LWPHSQVSLRGYSRVTVGTAAHV*GPGFLW
Trigger: CCAGAGGAAGCCAGGGCCCCAAACATGGGCAGCAGT...TCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR TCA 90 bp GCTGAGTTGGATGCACAGCTCCATGAGACAGCCTCCCGGAGCACACTCTTCCATACACAATCACGCCTATaGCAGAAGATGGGATCAGGA +
Preference number: 4 (lower is better)
Translates to: AELDAQLHETASRSTLFHTQSRL*QKMGSG
Trigger: TCCTGATCCCATCTTCTGTCATAGGCGTGATTGTGT...ATGGAAGAGTGTGCTCCGGGAGGCTGTCTCATGGAGCTGTGCATCCAACTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp ATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAACAGGGGACACATGGTaGAGGCATTCTGGTGGTCAC +
Preference number: 4 (lower is better)
Translates to: IGAADKPGQDLSSLPPGPTGDTW*RHSGGH
Trigger: GTGACCACCAGAATGCCTTCACCATGTGTCCCCTGT...TGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp ACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCCACAGGCTGAGCTaGGGTTCCAATAGTCACAGG +
Preference number: 4 (lower is better)
Translates to: TWTGPFFLTTRSSGHRNQSHRLS*GSNSHR
Trigger: CCTGTGACTATTGGAACCTCAGCTCAGCCTGTGGGA...TTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp TGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCGGTGACCTGGCACTTTaGGGTACTGCTGCCCATGTT +
Preference number: 4 (lower is better)
Translates to: WTGPFFLTTRSSGHRNQSGDLAL*GTAAHV
Trigger: AACATGGGCAGCAGTACCTCAAAGTGCCAGGTCACC...GGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp GGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTGGTGACCTGGCACTTTaGGGTACTGCTGCCCATGTT +
Preference number: 4 (lower is better)
Translates to: GQDLSSLPPGPVATEINPGDLAL*GTAAHV
Trigger: AACATGGGCAGCAGTACCTCAAAGTGCCAGGTCACC...AGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp GGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTACTTTGAGGTACTGCTaGCCATGTTTGGGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: GQDLSSLPPGPVATEINPTLRYC*PCLGPW
Trigger: CCAGGGCCCCAAACATGGGCAGCAGTACCTCAAAGT...AGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR GCA 90 bp ATATGCATCCTTGTCATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCCGCCATGGCGCTCCTTaGCTGTCTCCCCATTGGAGA +
Preference number: 4 (lower is better)
Translates to: ICILVIGAADKPGQDLSSRHGAP*LSPHWR
Trigger: TCTCCAATGGGGAGACAGGCAAGGAGCGCCATGGCG...GGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCATAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp GCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACATCTCTCCTGGAGACCTaGCTAGGGTGTAGGCTGGAA +
Preference number: 4 (lower is better)
Translates to: ALLWPHSQVSLRGYSRVTSLLET*LGCRLE
Trigger: TTCCAGCCTACACCCTAGCCAGGTCTCCAGGAGAGA...TGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp GGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTTACCCATCGTGTTGTTaGCTCGAGAACAGGCCGTCC +
Preference number: 4 (lower is better)
Translates to: GQDLSSLPPGPVATEINPYPSCC*LENRPS
Trigger: GGACGGCCTGTTCTCGAGCCAACAACACGATGGGTA...AGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp TTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAACAGGGGACACATGGTaGAGGCATTCTGGTGGTCAC +
Preference number: 4 (lower is better)
Translates to: LWPHSQVSLRGYSRVTVGTGDTW*RHSGGH
Trigger: GTGACCACCAGAATGCCTTCACCATGTGTCCCCTGT...TCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp GGCCAGACGGGCAGACAAAACAGACCAGTACTGCTTGGAAAACTCATAAGGGTTTCCCACAGGCTGAGCTaGGGTTCCAATAGTCACAGG +
Preference number: 4 (lower is better)
Translates to: GQTGRQNRPVLLGKLIRVSHRLS*GSNSHR
Trigger: CCTGTGACTATTGGAACCTCAGCTCAGCCTGTGGGA...AACCCTTATGAGTTTTCCAAGCAGTACTGGTCTGTTTTGTCTGCCCGTCTGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp GTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGCAGTCCCACAGGCTaGGCTGAGGTTCCAATAGTC +
Preference number: 4 (lower is better)
Translates to: VTSFASAQPCCGPIHKCLCSPTG*AEVPIV
Trigger: GACTATTGGAACCTCAGCTCAGCCTGTGGGACTGCA...GAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp CCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATTTCCTCTGGTTGTCGTaGAAGTGCATGCGGCTCAGA +
Preference number: 4 (lower is better)
Translates to: PGQDLSSLPPGPVATEINFLWLS*KCMRLR
Trigger: TCTGAGCCGCATGCACTTTCACGACAACCAGAGGAA...ATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp ACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCTGCAGAATGGCGCTaGACTTCTTTGCGATGCTGC +
Preference number: 4 (lower is better)
Translates to: TWTGPFFLTTRSSGHRNQSAEWR*TSLRCC
Trigger: GCAGCATCGCAAAGAAGTTCAGCGCCATTCTGCAGA...TTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp GTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCGCTCATCAGCCAGCTTaGCCTTCTCATGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: VTSFASAQPCCGPIHKCLAHQPA*PSHAPP
Trigger: AGGAGGAGCATGAGAAGGTCAAGCTGGCTGATGAGC...GAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp GTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCACCTGCCATGGGGCGTaGATCCGGACAAAGACAGAT +
Preference number: 4 (lower is better)
Translates to: VTSFASAQPCCGPIHKCLTCHGA*IRTKTD
Trigger: ATCTGTCTTTGTCCGGATCCACGCCCCATGGCAGGT...GAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp CAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGTTCTCTTTCTTGATCTaGTCGCTGATGTCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: QTNLDRTFLPYHQVQWPQFSFLI*SLMSVG
Trigger: CCCCACTGACATCAGCGACCAGATCAAGAAAGAGAA...CTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR TCA 90 bp CTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGACACAATCACGCCTATaGCAGAAGATGGGATCAGGA +
Preference number: 4 (lower is better)
Translates to: LPSLVVAPFTSVSERLFQTQSRL*QKMGSG
Trigger: TCCTGATCCCATCTTCTGTCATAGGCGTGATTGTGT...CTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp ATGCATCCTTGTCATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTTGCAGTCCCACAGGCTaGGCTGAGGTTCCAATAGTC +
Preference number: 4 (lower is better)
Translates to: MHPCHRSCRQTWTGPFFLCSPTG*AEVPIV
Trigger: GACTATTGGAACCTCAGCTCAGCCTGTGGGACTGCA...AAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp CTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGTGCTGCCTCCTGCTTTaGTCTCGTACATTTTCTTGG +
Preference number: 4 (lower is better)
Translates to: LPSLVVAPFTSVSERLFQCCLLL*SRTFSW
Trigger: CCAAGAAAATGTACGAGATCAAAGCAGGAGGCAGCA...CTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp AGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTAAACACTCCATAGCGTaGCCATTCCTGATACAGCAG +
Preference number: 4 (lower is better)
Translates to: RSCRQTWTGPFFLTTRSSKHSIA*PFLIQQ
Trigger: CTGCTGTATCAGGAATGGGCACGCTATGGAGTGTTT...ACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp GTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCGAGAGACAGGGCAGCTaGAGTTGTGATCCGATACAC +
Preference number: 4 (lower is better)
Translates to: VTSFASAQPCCGPIHKCLERQGS*SCDPIH
Trigger: GTGTATCGGATCACAACTGCAGCTGCCCTGTCTCTC...GAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR GCA 90 bp CCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGGGGGGAGGTTGATGATGACTaGTGTTGCAGTCACTGTCAC +
Preference number: 4 (lower is better)
Translates to: PHSQVSLRGYSRVTVGRGEVDDD*CCSHCH
Trigger: GTGACAGTGACTGCAACAGCAGTCATCATCAACCTC...CCCCCTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp AACAGACCAGTACTGCTTGGAAAACTCATAAGGGTTTGGTGCCCATGGTGGTTCTACCCATCGTGTTGTTaGCTCGAGAACAGGCCGTCC +
Preference number: 4 (lower is better)
Translates to: NRPVLLGKLIRVWCPWWFYPSCC*LENRPS
Trigger: GGACGGCCTGTTCTCGAGCCAACAACACGATGGGTA...GAACCACCATGGGCACCAAACCCTTATGAGTTTTCCAAGCAGTACTGGTCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp CCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGGGGGAAACTCATAAGGGTTTaGTGCCCATGGTGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: PHSQVSLRGYSRVTVGRGKLIRV*CPWWFS
Trigger: CGAGAACCACCATGGGCACCAAACCCTTATGAGTTT...CCCCCTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR TCA 90 bp AAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCACACAATCACGCCTATaGCAGAAGATGGGATCAGGA +
Preference number: 4 (lower is better)
Translates to: KPGQDLSSLPPGPVATEITQSRL*QKMGSG
Trigger: TCCTGATCCCATCTTCTGTCATAGGCGTGATTGTGT...GATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp ATATGCATCCTTGTCATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCCTCCTGGTCGAACTGTaGGTTTTCAGGCTGTGTTCC +
Preference number: 4 (lower is better)
Translates to: ICILVIGAADKPGQDLSSLLVEL*VFRLCS
Trigger: GGAACACAGCCTGAAAACTCACAGTTCGACCAGGAG...GGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR TCA 90 bp CTTCCTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGTTGAACCTGCAAAACTaGACCTCCTGGTCGAACTGT +
Preference number: 4 (lower is better)
Translates to: LPFGDTLKPVPSRRGTTVLNLQN*TSWSNC
Trigger: ACAGTTCGACCAGGAGGTTCAGTTTTGCAGGTTCAA...CACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR GCA 90 bp GACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTGAAACACTCCATAGCGTaGCCATTCCTGATACAGCAG +
Preference number: 4 (lower is better)
Translates to: DRTFLPYHQVQWPQKSILKHSIA*PFLIQQ
Trigger: CTGCTGTATCAGGAATGGGCACGCTATGGAGTGTTT...CAGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp TGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTCAAATTCATCTCGCTaGTCCCTCCTTTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: WTGPFFLTTRSSGHRNQSSNSSR*SLLSSS
Trigger: GGAAGAGGAAAGGAGGGAGCAGCGAGATGAATTTGA...GGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp AGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTTGCGATGCTGCCTCCTaGTTTGATCTCGTACATTTT +
Preference number: 4 (lower is better)
Translates to: RSCRQTWTGPFFLTTRSSCDAAS*FDLVHF
Trigger: AAAATGTACGAGATCAAAGCAGGAGGCAGCATCGCA...ACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp GACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTGGTGAAGGCATTCTGGTaGTCACACATCTCTTTGCTG +
Preference number: 4 (lower is better)
Translates to: DRTFLPYHQVQWPQKSILVKAFW*SHISLL
Trigger: CAGCAAAGAGATGTGTGACCACCAGAATGCCTTCAC...CAGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp AAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCACAAAGACAGATCCCTaGCTTTTGCTCTCCAAGTCC +
Preference number: 4 (lower is better)
Translates to: KPGQDLSSLPPGPVATEITKTDP*LLLSKS
Trigger: GGACTTGGAGAGCAAAAGCCAGGGATCTGTCTTTGT...GATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp ACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCTGGACGTTTTGAGTaGTCAGGGTCACTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: TWTGPFFLTTRSSGHRNQSGRFE*SGSLSP
Trigger: TGGAGAAAGTGACCCTGACCACTCAAAACGTCCAGA...TTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR TCA 90 bp GTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGCTGCCTCCTGCTTTaGTCTCGTACATTTTCTTGG +
Preference number: 4 (lower is better)
Translates to: VTSFASAQPCCGPIHKCLCCLLL*SRTFSW
Trigger: CCAAGAAAATGTACGAGATCAAAGCAGGAGGCAGCA...GAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp CTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGTTATCAGATCCCTGGCTTTTaGTCTCCAAGTCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: LLETPLSQFPAEEVPLCYQIPGF*SPSPSP
Trigger: TGGAGAAGGACTTGGAGAGCAAAAGCCAGGGATCTG...ATAACACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp ATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAAGCTTGACCTTCTCATaGTCCTCCTTCAGAAAGAAG +
Preference number: 4 (lower is better)
Translates to: IGAADKPGQDLSSLPPGPSLTFS*SSFRKK
Trigger: CTTCTTTCTGAAGGAGGAGCATGAGAAGGTCAAGCT...TGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp CCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGGGGGCACACATCTCTTTGCTaGGAATATCTTCCTCGATTG +
Preference number: 4 (lower is better)
Translates to: PHSQVSLRGYSRVTVGRGHTSLC*EYLPRL
Trigger: CAATCGAGGAAGATATTCCCAGCAAAGAGATGTGTG...CCCCCTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp GGCCAGACGGGCAGACAAAACAGACCAGTACTGCTTGGAAAACTCATAAGGGTTGTGAAGGCATTCTGGTaGTCACACATCTCTTTGCTG +
Preference number: 4 (lower is better)
Translates to: GQTGRQNRPVLLGKLIRVVKAFW*SHISLL
Trigger: CAGCAAAGAGATGTGTGACCACCAGAATGCCTTCAC...AACCCTTATGAGTTTTCCAAGCAGTACTGGTCTGTTTTGTCTGCCCGTCTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp CAACTCCCTGAAAGGACACAGCTCAAAAGTCAACCTAAAAGAAACACAAGCTTCAGAACTCAGCCGACGTaGAGATCCAGGGAGCAGAGG +
Preference number: 4 (lower is better)
Translates to: QLPERTQLKSQPKRNTSFRTQPT*RSREQR
Trigger: CCTCTGCTCCCTGGATCTCCACGTCGGCTGAGTTCT...GAAGCTTGTGTTTCTTTTAGGTTGACTTTTGAGCTGTGTCCTTTCAGGGAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp TCTGTCTCATCTTTCAGCTTCCGAAAGAGTTTCTTTAGCTTCGGGACTCCAATCTCTCTCCTGGAGACCTaGCTAGGGTGTAGGCTGGAA +
Preference number: 4 (lower is better)
Translates to: SVSSFSFRKSFFSFGTPISLLET*LGCRLE
Trigger: TTCCAGCCTACACCCTAGCCAGGTCTCCAGGAGAGA...GATTGGAGTCCCGAAGCTAAAGAAACTCTTTCGGAAGCTGAAAGATGAGACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp ACCAACTCCCTGAAAGGACACAGCTCAAAAGTCAACCTAAAAGAAACACAAGCTTGCAGTCCCACAGGCTaGGCTGAGGTTCCAATAGTC +
Preference number: 4 (lower is better)
Translates to: TNSLKGHSSKVNLKETQACSPTG*AEVPIV
Trigger: GACTATTGGAACCTCAGCTCAGCCTGTGGGACTGCA...AGCTTGTGTTTCTTTTAGGTTGACTTTTGAGCTGTGTCCTTTCAGGGAGTTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp TCTGTCTCATCTTTCAGCTTCCGAAAGAGTTTCTTTAGCTTCGGGACTCCAATCTTCCTCTGGTTGTCGTaGAAGTGCATGCGGCTCAGA +
Preference number: 4 (lower is better)
Translates to: SVSSFSFRKSFFSFGTPIFLWLS*KCMRLR
Trigger: TCTGAGCCGCATGCACTTTCACGACAACCAGAGGAA...GATTGGAGTCCCGAAGCTAAAGAAACTCTTTCGGAAGCTGAAAGATGAGACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp CCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGGGGGTTTCCGGTAGTGGTATaGAAGTACATAGTCGACTTT +
Preference number: 4 (lower is better)
Translates to: PHSQVSLRGYSRVTVGRGFPVVV*KYIVDF
Trigger: AAAGTCGACTATGTACTTGCATACCACTACCGGAAA...CCCCCTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp CTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGTTATTCAAATTCATCTCGCTaGTCCCTCCTTTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: LLETPLSQFPAEEVPLCYSNSSR*SLLSSS
Trigger: GGAAGAGGAAAGGAGGGAGCAGCGAGATGAATTTGA...ATAACACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp GCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACATTTTCATCCTGTTGTTaGTGTGTTCAGGAACTCTGG +
Preference number: 4 (lower is better)
Translates to: ALLWPHSQVSLRGYSRVTFSSCC*CVQELW
Trigger: CCAGAGTTCCTGAACACAGCAACAACAGGATGAAAA...TGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp AAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCCACACATCTCTTTGCTaGGAATATCTTCCTCGATTG +
Preference number: 4 (lower is better)
Translates to: KPGQDLSSLPPGPVATEIHTSLC*EYLPRL
Trigger: CAATCGAGGAAGATATTCCCAGCAAAGAGATGTGTG...GATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp GTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGAAAGAAGACGGTGGCTaGATTGTCAAACAGATGACT +
Preference number: 4 (lower is better)
Translates to: VAPFTSVSERLFQGDSRKKEDGG*IVKQMT
Trigger: AGTCATCTGTTTGACAATCCAGCCACCGTCTTCTTT...CTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp ATAACATGCCCTCCTCTGCTGCCAATGACTCATACATTGGTGTGCTGGGACCCTTGGAAAAGAAGACGGTaGCTGGATTGTCAAACAGAT +
Preference number: 4 (lower is better)
Translates to: ITCPPLLPMTHTLVCWDPWKRRR*LDCQTD
Trigger: ATCTGTTTGACAATCCAGCCACCGTCTTCTTTTCCA...AGGGTCCCAGCACACCAATGTATGAGTCATTGGCAGCAGAGGAGGGCATGTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp GGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTTGGAAAAGAAGACGGTaGCTGGATTGTCAAACAGAT +
Preference number: 4 (lower is better)
Translates to: GQDLSSLPPGPVATEINPWKRRR*LDCQTD
Trigger: ATCTGTTTGACAATCCAGCCACCGTCTTCTTTTCCA...AGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp CCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGGGGGTTTTTCCCTGGAGAATaGGTAGGAGAGGTTTTTCAT +
Preference number: 4 (lower is better)
Translates to: PHSQVSLRGYSRVTVGRGFFPGE*VGEVFH
Trigger: ATGAAAAACCTCTCCTACCCATTCTCCAGGGAAAAA...CCCCCTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp ACCAACTCCCTGAAAGGACACAGCTCAAAAGTCAACCTAAAAGAAACACAAGCTTCTGCAGAATGGCGCTaGACTTCTTTGCGATGCTGC +
Preference number: 4 (lower is better)
Translates to: TNSLKGHSSKVNLKETQASAEWR*TSLRCC
Trigger: GCAGCATCGCAAAGAAGTTCAGCGCCATTCTGCAGA...AGCTTGTGTTTCTTTTAGGTTGACTTTTGAGCTGTGTCCTTTCAGGGAGTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp CTTCCTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGTTTCCGGTAGTGGTATaGAAGTACATAGTCGACTTT +
Preference number: 4 (lower is better)
Translates to: LPFGDTLKPVPSRRGTTVFPVVV*KYIVDF
Trigger: AAAGTCGACTATGTACTTGCATACCACTACCGGAAA...CACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp CTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGTTATTGCGATGCTGCCTCCTaGTTTGATCTCGTACATTTT +
Preference number: 4 (lower is better)
Translates to: LLETPLSQFPAEEVPLCYCDAAS*FDLVHF
Trigger: AAAATGTACGAGATCAAAGCAGGAGGCAGCATCGCA...ATAACACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp TTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGATCAAAGATATTGTTCTaGATCAGCTGCTTGCCCAAC +
Preference number: 4 (lower is better)
Translates to: LWPHSQVSLRGYSRVTVGSKILF*ISCLPN
Trigger: GTTGGGCAAGCAGCTGATCCAGAACAATATCTTTGA...TCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp AGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGTGACAAAACCAAACTaGATGATCATTTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: RSCRQTWTGPFFLTTRSSVTKPN*MIISMY
Trigger: GTACATGGAAATGATCATCCAGTTTGGTTTTGTCAC...ACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR TCA 90 bp ACCAACTCCCTGAAAGGACACAGCTCAAAAGTCAACCTAAAAGAAACACAAGCTGTTCCCTCCTTCAGCTaGCTGACGTTGAAAAAGGAG +
Preference number: 4 (lower is better)
Translates to: TNSLKGHSSKVNLKETQAVPSFS*LTLKKE
Trigger: CTCCTTTTTCAACGTCAGTCAGCTGAAGGAGGGAAC...AGCTTGTGTTTCTTTTAGGTTGACTTTTGAGCTGTGTCCTTTCAGGGAGTTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR GCA 90 bp CTTCCTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGATCTTCCTCGATTGTTaGACATCCATAAAGAAACAC +
Preference number: 4 (lower is better)
Translates to: LPFGDTLKPVPSRRGTTVIFLDC*TSIKKH
Trigger: GTGTTTCTTTATGGATGTGCAACAATCGAGGAAGAT...CACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp GAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGACCCGAGAAAATTGGCACTTTGAGGTACTaGTGCCCATGTTTGGGGCCC +
Preference number: 4 (lower is better)
Translates to: ELLSPKMMVKNKKGPEKIGTLRY*CPCLGP
Trigger: GGGCCCCAAACATGGGCAGCAGTACCTCAAAGTGCC...AATTTTCTCGGGTCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR GCA 90 bp CAACTCCCTGAAAGGACACAGCTCAAAAGTCAACCTAAAAGAAACACAAGCTTCCAGATCCCTGGCTTTTaGTCTCCAAGTCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: QLPERTQLKSQPKRNTSFQIPGF*SPSPSP
Trigger: TGGAGAAGGACTTGGAGAGCAAAAGCCAGGGATCTG...GAAGCTTGTGTTTCTTTTAGGTTGACTTTTGAGCTGTGTCCTTTCAGGGAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp ATGCATCCTTGTCATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTCACACATCTCTTTGCTaGGAATATCTTCCTCGATTG +
Preference number: 4 (lower is better)
Translates to: MHPCHRSCRQTWTGPFFLHTSLC*EYLPRL
Trigger: CAATCGAGGAAGATATTCCCAGCAAAGAGATGTGTG...AAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp ATATGCATCCTTGTCATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTGGAAAAGAAGACGGTaGCTGGATTGTCAAACAGAT +
Preference number: 4 (lower is better)
Translates to: ICILVIGAADKPGQDLSSWKRRR*LDCQTD
Trigger: ATCTGTTTGACAATCCAGCCACCGTCTTCTTTTCCA...GGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp TTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAATCTTCCTCGATTGTTaGACATCCATAAAGAAACAC +
Preference number: 4 (lower is better)
Translates to: LWPHSQVSLRGYSRVTVGIFLDC*TSIKKH
Trigger: GTGTTTCTTTATGGATGTGCAACAATCGAGGAAGAT...TCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR GCA 90 bp AGAGAATGTCAAACCAAATTCCAATGTCTTTGGTCCTCACAGCATCTGGGCGTCTTTTCATCCTGTTGTTaGTGTGTTCAGGAACTCTGG +
Preference number: 4 (lower is better)
Translates to: RECQTKFQCLWSSQHLGVFSSCC*CVQELW
Trigger: CCAGAGTTCCTGAACACAGCAACAACAGGATGAAAA...GACGCCCAGATGCTGTGAGGACCAAAGACATTGGAATTTGGTTTGACATTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161619.8
3UTR CAA 72 bp ATTCCAGAGAGAATGTCAAACCAAATTCCAATGTCTTaGGTCCTCACAGCATCTGGGCGTCTCAGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: IPERMSNQIPMS*VLTASGRLSSV
Trigger: TACAGAACTGAGACGCCCAGATGCTGTGAGGACCAAAGACATTGGAATTTGGTTTGACATTCTCTCTGGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR TCA 90 bp GAAATCAATCCTGTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTCAAAACCAAACTGGATaGTCATTTCCATGTACTCAG +
Preference number: 4 (lower is better)
Translates to: EINPVTSFASAQPCCGPIQNQTG*SFPCTQ
Trigger: CTGAGTACATGGAAATGATCATCCAGTTTGGTTTTG...AATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTACAGGATTGATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp GAAATCAATCCTGTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTAACATCACTAGGTTCTaGAAGATGATAACAAAGGCC +
Preference number: 4 (lower is better)
Translates to: EINPVTSFASAQPCCGPINITRF*KMITKA
Trigger: GGCCTTTGTTATCATCTTCCAGAACCTAGTGATGTT...AATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTACAGGATTGATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CCA 90 bp AGCTTTGAGGATCAACCGTTCTTCAAAAGTCTGTTCTGTTTTCGGAACCTCGATAAAGAAGACGGTGGCTaGATTGTCAAACAGATGACT +
Preference number: 4 (lower is better)
Translates to: SFEDQPFFKSLFCFRNLDKEDGG*IVKQMT
Trigger: AGTCATCTGTTTGACAATCCAGCCACCGTCTTCTTT...ATCGAGGTTCCGAAAACAGAACAGACTTTTGAAGAACGGTTGATCCTCAAAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp CAACTCCCTGAAAGGACACAGCTCAAAAGTCAACCTAAAAGAAACACAAGCTTCAAAGAAGACGGTGGCTaGATTGTCAAACAGATGACT +
Preference number: 4 (lower is better)
Translates to: QLPERTQLKSQPKRNTSFKEDGG*IVKQMT
Trigger: AGTCATCTGTTTGACAATCCAGCCACCGTCTTCTTT...GAAGCTTGTGTTTCTTTTAGGTTGACTTTTGAGCTGTGTCCTTTCAGGGAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp ACCAACTCCCTGAAAGGACACAGCTCAAAAGTCAACCTAAAAGAAACACAAGCTCAGACCAGTACTGCTTaGAAAACTCATAAGGGTTTG +
Preference number: 4 (lower is better)
Translates to: TNSLKGHSSKVNLKETQAQTSTA*KTHKGL
Trigger: CAAACCCTTATGAGTTTTCCAAGCAGTACTGGTCTG...AGCTTGTGTTTCTTTTAGGTTGACTTTTGAGCTGTGTCCTTTCAGGGAGTTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR GCA 90 bp GAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGACCCGAGAAAATTAAACACTCCATAGCGTaGCCATTCCTGATACAGCAG +
Preference number: 4 (lower is better)
Translates to: ELLSPKMMVKNKKGPEKIKHSIA*PFLIQQ
Trigger: CTGCTGTATCAGGAATGGGCACGCTATGGAGTGTTT...AATTTTCTCGGGTCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp GAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGACCCGAGAAAATTACAAAGACAGATCCCTaGCTTTTGCTCTCCAAGTCC +
Preference number: 4 (lower is better)
Translates to: ELLSPKMMVKNKKGPEKITKTDP*LLLSKS
Trigger: GGACTTGGAGAGCAAAAGCCAGGGATCTGTCTTTGT...AATTTTCTCGGGTCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CCA 90 bp AGCTTTGAGGATCAACCGTTCTTCAAAAGTCTGTTCTGTTTTCGGAACCTCGATTTTTTCCCTGGAGAATaGGTAGGAGAGGTTTTTCAT +
Preference number: 4 (lower is better)
Translates to: SFEDQPFFKSLFCFRNLDFFPGE*VGEVFH
Trigger: ATGAAAAACCTCTCCTACCCATTCTCCAGGGAAAAA...ATCGAGGTTCCGAAAACAGAACAGACTTTTGAAGAACGGTTGATCCTCAAAGCT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000161619.8
3UTR CAA 72 bp ACAGCAATGACAAAAGCATTAATGATGACGGAGAACTaGCCAATTCCAGAGAGAATGTCAAACCAAATTCCA +
Preference number: 4 (lower is better)
Translates to: TAMTKALMMTEN*PIPERMSNQIP
Trigger: TGGAATTTGGTTTGACATTCTCTCTGGAATTGGCAAGTTCTCCGTCATCATTAATGCTTTTGTCATTGCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS CCA 90 bp AGAGCATCCAGTGGCCCAAGTTCAACATCACCAGGGCCCCCGCCATaGCGCTCCTTGCCTGTCTCCCCATTGGAGATAACAGCCAGAGAG +
Preference number: 5 (lower is better)
Translates to: RASSGPSSTSPGPPP*RSLPVSPLEITARE
Trigger: CTCTCTGGCTGTTATCTCCAATGGGGAGACAGGCAAGGAGCGCCATGGCGGGGGCCCTGGTGATGTTGAACTTGGGCCACTGGATGCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CCA 90 bp ATCTTCAAGAACTCTGCTTCCCTGGCCAGCACCTGCCATGGGGCGTaGATCCGGACAAAGACAGATCCCTGGCTTTTGCTCTCCAAGTCC +
Preference number: 5 (lower is better)
Translates to: IFKNSASLASTCHGA*IRTKTDPWLLLSKS
Trigger: GGACTTGGAGAGCAAAAGCCAGGGATCTGTCTTTGTCCGGATCCACGCCCCATGGCAGGTGCTGGCCAGGGAAGCAGAGTTCTTGAAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS TCA 90 bp GGCTGGATTGTCAAACAGATGACTGGCCCGTGCAGTCCCACAGGCTaGGCTGAGGTTCCAATAGTCACAGGACTTGTCACACAGGGGACA +
Preference number: 5 (lower is better)
Translates to: GWIVKQMTGPCSPTG*AEVPIVTGLVTQGT
Trigger: TGTCCCCTGTGTGACAAGTCCTGTGACTATTGGAACCTCAGCTCAGCCTGTGGGACTGCACGGGCCAGTCATCTGTTTGACAATCCAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 90 bp ATGCAAGTACATAGTCGACTTTCCTCTGGTTGTCGTGAAAGTGCATaGGGCTCAGACGGGCTTCCGAGGACGGGGGCTCATTGGCATCCA +
Preference number: 5 (lower is better)
Translates to: MQVHSRLSSGCRESA*GSDGLPRTGAHWHP
Trigger: TGGATGCCAATGAGCCCCCGTCCTCGGAAGCCCGTCTGAGCCGCATGCACTTTCACGACAACCAGAGGAAAGTCGACTATGTACTTGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 90 bp GGAGATAACAGCCAGAGAGTGTCCAGGGGAGCCGTGACCCAGGTGTaGGCCTCGTTTCCGGTAGTGGTATGCAAGTACATAGTCGACTTT +
Preference number: 5 (lower is better)
Translates to: GDNSQRVSRGAVTQV*ASFPVVVCKYIVDF
Trigger: AAAGTCGACTATGTACTTGCATACCACTACCGGAAACGAGGCGCACACCTGGGTCACGGCTCCCCTGGACACTCTCTGGCTGTTATCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 90 bp AGCTCCAGCCCAGCAGCCATCAGGTTGTGCTCAAATTCATCTCGCTaGTCCCTCCTTTCCTCTTCCAGAGCATCCAGTGGCCCAAGTTCA +
Preference number: 5 (lower is better)
Translates to: SSSPAAIRLCSNSSR*SLLSSSRASSGPSS
Trigger: TGAACTTGGGCCACTGGATGCTCTGGAAGAGGAAAGGAGGGAGCAGCGAGATGAATTTGAGCACAACCTGATGGCTGCTGGGCTGGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 90 bp AGGGGAGCCGTGACCCAGGTGTGCGCCTCGTTTCCGGTAGTGGTATaGAAGTACATAGTCGACTTTCCTCTGGTTGTCGTGAAAGTGCAT +
Preference number: 5 (lower is better)
Translates to: RGAVTQVCASFPVVV*KYIVDFPLVVVKVH
Trigger: ATGCACTTTCACGACAACCAGAGGAAAGTCGACTATGTACTTGCATACCACTACCGGAAACGAGGCGCACACCTGGGTCACGGCTCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp CTTCCTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGGGCTCATCAGCCAGCTaGACCTTCTCATGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: LPFGDTLKPVPSRRGTTVGSSAS*TFSCSS
Trigger: GGAGGAGCATGAGAAGGTCAAGCTGGCTGATGAGCC...CACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS TCA 90 bp TTTCATCCTGTTGTTGCTGTGTTCAGGAACTCTGGGCTGCAGGGGTaGACTGAGCGTCTGCAGAATGGCGCTGAACTTCTTTGCGATGCT +
Preference number: 5 (lower is better)
Translates to: FHPVVAVFRNSGLQG*TERLQNGAELLCDA
Trigger: AGCATCGCAAAGAAGTTCAGCGCCATTCTGCAGACGCTCAGTTCACCCCTGCAGCCCAGAGTTCCTGAACACAGCAACAACAGGATGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp ATATGCATCCTTGTCATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTGGAGCGTGTGGCCTaGTTGAGAGACAGGGCAGCT +
Preference number: 5 (lower is better)
Translates to: ICILVIGAADKPGQDLSSLERVA*LRDRAA
Trigger: AGCTGCCCTGTCTCTCAACAAGGCCACACGCTCCAA...GGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CAA 90 bp CTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGTTATACTGTCACCCGGACATaGGAGCGTGTGGCCTTGTTG +
Preference number: 5 (lower is better)
Translates to: LLETPLSQFPAEEVPLCYTVTRT*ERVALL
Trigger: CAACAAGGCCACACGCTCCAATGTCCGGGTGACAGT...ATAACACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS GCA 90 bp GAGAGGTTTTTCATCCTGTTGTTGCTGTGTTCAGGAACTCTGGGCTaGAGGGGTGAACTGAGCGTCTGCAGAATGGCGCTGAACTTCTTT +
Preference number: 5 (lower is better)
Translates to: ERFFILLLLCSGTLG*RGELSVCRMALNFF
Trigger: AAAGAAGTTCAGCGCCATTCTGCAGACGCTCAGTTCACCCCTGCAGCCCAGAGTTCCTGAACACAGCAACAACAGGATGAAAAACCTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGCATCCTCAGGTGAATTaGCTTCCAGCTTCTGAACCG +
Preference number: 5 (lower is better)
Translates to: VAPFTSVSERLFQGDSRKHPQVN*LPASEP
Trigger: CGGTTCAGAAGCTGGAAGCAAATTCACCTGAGGATG...CTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp CCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCATCCTCAGGTGAATTaGCTTCCAGCTTCTGAACCG +
Preference number: 5 (lower is better)
Translates to: PGQDLSSLPPGPVATEINHPQVN*LPASEP
Trigger: CGGTTCAGAAGCTGGAAGCAAATTCACCTGAGGATG...ATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp AGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACTTAATACCCATCGTGTaGTTGGCTCGAGAACAGGCC +
Preference number: 5 (lower is better)
Translates to: SLVVAPFTSVSERLFQGDLIPIV*LAREQA
Trigger: GGCCTGTTCTCGAGCCAACAACACGATGGGTATTAA...GTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp AAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCACTGCTCTGGACGTTTaGAGTGGTCAGGGTCACTTT +
Preference number: 5 (lower is better)
Translates to: KPGQDLSSLPPGPVATEITALDV*SGQGHF
Trigger: AAAGTGACCCTGACCACTCAAAACGTCCAGAGCAGT...GATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS CCA 90 bp TGCCCATTCCTGATACAGCAGCTTTCTGTCATTCATGTCATCCCCTaGACTGTCATATTCACCATCATGAAGCGGGTAGGCAGCCTCGTA +
Preference number: 5 (lower is better)
Translates to: CPFLIQQLSVIHVIP*TVIFTIMKRVGSLV
Trigger: TACGAGGCTGCCTACCCGCTTCATGATGGTGAATATGACAGTCCAGGGGATGACATGAATGACAGAAAGCTGCTGTATCAGGAATGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp CTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGATGCTGCCTCCTGCTTaGATCTCGTACATTTTCTTG +
Preference number: 5 (lower is better)
Translates to: LPSLVVAPFTSVSERLFQMLPPA*ISYIFL
Trigger: CAAGAAAATGTACGAGATCAAAGCAGGAGGCAGCAT...CTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp ATATGCATCCTTGTCATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCCGGCTCCGGGTAGCATaGTCAAAGAAGGTGTCCTTT +
Preference number: 5 (lower is better)
Translates to: ICILVIGAADKPGQDLSSRLRVA*SKKVSF
Trigger: AAAGGACACCTTCTTTGACAATGCTACCCGGAGCCG...GGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp TTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGATTAATACCCATCGTGTaGTTGGCTCGAGAACAGGCC +
Preference number: 5 (lower is better)
Translates to: LWPHSQVSLRGYSRVTVGLIPIV*LAREQA
Trigger: GGCCTGTTCTCGAGCCAACAACACGATGGGTATTAA...TCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp CAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGTTGAGCAAGAAAGCTTaGAGGATCAACCGTTCTTCA +
Preference number: 5 (lower is better)
Translates to: QTNLDRTFLPYHQVQWPQLSKKA*RINRSS
Trigger: TGAAGAACGGTTGATCCTCAAAGCTTTCTTGCTCAA...CTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CAA 90 bp CTTCCTTTTGGAGACACCCTTAAGCCAGTTCCCAGCAGAAGAGGTACCACTGTGCAAATTCCAATGTCTTaGGTCCTCACAGCATCTGGG +
Preference number: 5 (lower is better)
Translates to: LPFGDTLKPVPSRRGTTVQIPMS*VLTASG
Trigger: CCCAGATGCTGTGAGGACCAAAGACATTGGAATTTG...CACAGTGGTACCTCTTCTGCTGGGAACTGGCTTAAGGGTGTCTCCAAAAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CAA 90 bp CCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGGGGGAAGCTCTTCTCTTTCTaGATCTGGTCGCTGATGTCA +
Preference number: 5 (lower is better)
Translates to: PHSQVSLRGYSRVTVGRGKLFSF*IWSLMS
Trigger: TGACATCAGCGACCAGATCAAGAAAGAGAAGAGCTT...CCCCCTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CAA 90 bp GAAATCAATCCTGTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTTTGCCTGTCTCCCCATaGGAGATAACAGCCAGAGAG +
Preference number: 5 (lower is better)
Translates to: EINPVTSFASAQPCCGPILPVSP*EITARE
Trigger: CTCTCTGGCTGTTATCTCCAATGGGGAGACAGGCAA...AATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTACAGGATTGATTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGTTCTTGGTGGGGACTTaGATCTTCAAGAACTCTGCT +
Preference number: 5 (lower is better)
Translates to: VAPFTSVSERLFQGDSRKFLVGT*IFKNSA
Trigger: AGCAGAGTTCTTGAAGATCAAAGTCCCCACCAAGAA...CTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp AGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACTTCTTGGTGGGGACTTaGATCTTCAAGAACTCTGCT +
Preference number: 5 (lower is better)
Translates to: SLVVAPFTSVSERLFQGDFLVGT*IFKNSA
Trigger: AGCAGAGTTCTTGAAGATCAAAGTCCCCACCAAGAA...GTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp CTGCCCAGCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGATCTCGTACATTTTCTaGGTGGGGACTTTGATCTTC +
Preference number: 5 (lower is better)
Translates to: LPSLVVAPFTSVSERLFQISYIF*VGTLIF
Trigger: GAAGATCAAAGTCCCCACCAAGAAAATGTACGAGAT...CTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGCTGGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGCGCACTTCAATGACATaGTTGAGGAGAGCAAACACA +
Preference number: 5 (lower is better)
Translates to: VAPFTSVSERLFQGDSRKRTSMT*LRRANT
Trigger: TGTGTTTGCTCTCCTCAACAATGTCATTGAAGTGCG...CTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS TCA 90 bp GATGTGGATGGCTCATCATCCTCAGGTGAATTTGCTTCCAGCTTCTaGACCGCTGACTTGCCACTCTCCTTTAACAGTTTCTCTCGTACT +
Preference number: 5 (lower is better)
Translates to: DVDGSSSSGEFASSF*TADLPLSFNSFSRT
Trigger: AGTACGAGAGAAACTGTTAAAGGAGAGTGGCAAGTCAGCGGTTCAGAAGCTGGAAGCAAATTCACCTGAGGATGATGAGCCATCCACATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp AGCCATGTAGTGTCCCGTTGTGGCTATAGGAGTACTGGTACACAAGGCGGGGGAGAATATCTTCCTCGATaGTTGCACATCCATAAAGAA +
Preference number: 5 (lower is better)
Translates to: SHVVSRCGYRSTGTQGGGEYLPR*LHIHKE
Trigger: TTCTTTATGGATGTGCAACAATCGAGGAAGATATTC...TCCCCCGCCTTGTGTACCAGTACTCCTATAGCCACAACGGGACACTACATGGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp AGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCGAATATCTTCCTCGATaGTTGCACATCCATAAAGAA +
Preference number: 5 (lower is better)
Translates to: SCRQTWTGPFFLTTRSSGEYLPR*LHIHKE
Trigger: TTCTTTATGGATGTGCAACAATCGAGGAAGATATTC...GCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp ATGCATCCTTGTCATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTTGGTCACACATCTCTTaGCTGGGAATATCTTCCTCG +
Preference number: 5 (lower is better)
Translates to: MHPCHRSCRQTWTGPFFLWSHIS*LGISSS
Trigger: CGAGGAAGATATTCCCAGCAAAGAGATGTGTGACCA...AAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTATGACAAGGATGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTGATCTCGTACATTTTCTaGGTGGGGACTTTGATCTTC +
Preference number: 5 (lower is better)
Translates to: DRTFLPYHQVQWPQKSILISYIF*VGTLIF
Trigger: GAAGATCAAAGTCCCCACCAAGAAAATGTACGAGAT...CAGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GGCCAGACGGGCAGACAAAACAGACCAGTACTGCTTGGAAAACTCATAAGGGTTATGCTGCCTCCTGCTTaGATCTCGTACATTTTCTTG +
Preference number: 5 (lower is better)
Translates to: GQTGRQNRPVLLGKLIRVMLPPA*ISYIFL
Trigger: CAAGAAAATGTACGAGATCAAAGCAGGAGGCAGCAT...AACCCTTATGAGTTTTCCAAGCAGTACTGGTCTGTTTTGTCTGCCCGTCTGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GCCTTGTTGTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACATTTTTCATCCTGTTGTaGCTGTGTTCAGGAACTCTG +
Preference number: 5 (lower is better)
Translates to: ALLWPHSQVSLRGYSRVTFFILL*LCSGTL
Trigger: CAGAGTTCCTGAACACAGCAACAACAGGATGAAAAA...TGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCACAACAAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GGACAGGACCTTTCTTCCTTACCACCAGGTCCAGTGGCCACAGAAATCAATCCTAGGTTTTTCATCCTGTaGTTGCTGTGTTCAGGAACT +
Preference number: 5 (lower is better)
Translates to: GQDLSSLPPGPVATEINPRFFIL*LLCSGT
Trigger: AGTTCCTGAACACAGCAACAACAGGATGAAAAACCT...AGGATTGATTTCTGTGGCCACTGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp TCTGTCTCATCTTTCAGCTTCCGAAAGAGTTTCTTTAGCTTCGGGACTCCAATCCGGCTCCGGGTAGCATaGTCAAAGAAGGTGTCCTTT +
Preference number: 5 (lower is better)
Translates to: SVSSFSFRKSFFSFGTPIRLRVA*SKKVSF
Trigger: AAAGGACACCTTCTTTGACAATGCTACCCGGAGCCG...GATTGGAGTCCCGAAGCTAAAGAAACTCTTTCGGAAGCTGAAAGATGAGACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GTGGCCCCATTCACAAGTGTCTCTGAGAGGTTATTCCAGGGTGACAGTAGGAAGCCAATCTCAAAGATATaGTTCTGGATCAGCTGCTTG +
Preference number: 5 (lower is better)
Translates to: VAPFTSVSERLFQGDSRKPISKI*FWISCL
Trigger: CAAGCAGCTGATCCAGAACAATATCTTTGAGATTGG...CTTCCTACTGTCACCCTGGAATAACCTCTCAGAGACACTTGTGAATGGGGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS CCA 90 bp GAACCGCTGACTTGCCACTCTCCTTTAACAGTTTCTCTCGTACTTTaGTTTCATATTCAGGCCGAGAGTGTTCTTCTTCCTCTTCGATCC +
Preference number: 5 (lower is better)
Translates to: EPLTCHSPLTVSLVL*FHIQAESVLLPLRS
Trigger: GGATCGAAGAGGAAGAAGAACACTCTCGGCCTGAATATGAAACCAAAGTACGAGAGAAACTGTTAAAGGAGAGTGGCAAGTCAGCGGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159984.2
CDS CCA 90 bp GAACCGCTGACTTGCCACTCTCCTTTAACAGTTTCTCTCGTACTTTaGTTTCATATTCAGGCCGAGAGTGTTCCTGGGAACGTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: EPLTCHSPLTVSLVL*FHIQAESVPGNVLL
Trigger: AAGAAGAACGTTCCCAGGAACACTCTCGGCCTGAATATGAAACCAAAGTACGAGAGAAACTGTTAAAGGAGAGTGGCAAGTCAGCGGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GGGACCCTCACTGAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGATTGCCTGTCTCCCCATaGGAGATAACAGCCAGAGAG +
Preference number: 5 (lower is better)
Translates to: GTLTELLSPKMMVKNKKGLPVSP*EITARE
Trigger: CTCTCTGGCTGTTATCTCCAATGGGGAGACAGGCAA...TCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTCAGTGAGGGTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GGGACCCTCACTGAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGACCAGCAGCCATCAGGTaGTGCTCAAATTCATCTCGC +
Preference number: 5 (lower is better)
Translates to: GTLTELLSPKMMVKNKKGPAAIR*CSNSSR
Trigger: GCGAGATGAATTTGAGCACAACCTGATGGCTGCTGG...TCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTCAGTGAGGGTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp CAACTCCCTGAAAGGACACAGCTCAAAAGTCAACCTAAAAGAAACACAAGCTTCCCAGCAGCCATCAGGTaGTGCTCAAATTCATCTCGC +
Preference number: 5 (lower is better)
Translates to: QLPERTQLKSQPKRNTSFPAAIR*CSNSSR
Trigger: GCGAGATGAATTTGAGCACAACCTGATGGCTGCTGG...GAAGCTTGTGTTTCTTTTAGGTTGACTTTTGAGCTGTGTCCTTTCAGGGAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGACCCGAGAAAATTGAGCGTGTGGCCTTGTaGAGAGACAGGGCAGCTGCA +
Preference number: 5 (lower is better)
Translates to: ELLSPKMMVKNKKGPEKIERVAL*RDRAAA
Trigger: TGCAGCTGCCCTGTCTCTCAACAAGGCCACACGCTC...AATTTTCTCGGGTCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS TCA 90 bp TCTTCATCATCCTCATCATCCTCAGGTGAATTTGCTTCCAGCTTCTaGACCGCTGACTTGCCACTCTCCTTTAACAGTTTCTCTCGTACT +
Preference number: 5 (lower is better)
Translates to: SSSSSSSSGEFASSF*TADLPLSFNSFSRT
Trigger: AGTACGAGAGAAACTGTTAAAGGAGAGTGGCAAGTCAGCGGTTCAGAAGCTGGAAGCAAATTCACCTGAGGATGATGAGGATGATGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS-3UTR CAA 90 bp ATAGGAGCTGCAGACAAACCTGGACAGGACCTTTCTTCCTTACCACCAGGTCCAGAATATCTTCCTCGATaGTTGCACATCCATAAAGAA +
Preference number: 5 (lower is better)
Translates to: IGAADKPGQDLSSLPPGPEYLPR*LHIHKE
Trigger: TTCTTTATGGATGTGCAACAATCGAGGAAGATATTC...TGGACCTGGTGGTAAGGAAGAAAGGTCCTGTCCAGGTTTGTCTGCAGCTCCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp CAAGTATCCTGGGAAACGATCTTTCCAAGTCAGTTTATCTTCATCATCCCTGTGCATCCTCAGGTGAATTaGCTTCCAGCTTCTGAACCG +
Preference number: 5 (lower is better)
Translates to: QVSWETIFPSQFIFIIPVHPQVN*LPASEP
Trigger: CGGTTCAGAAGCTGGAAGCAAATTCACCTGAGGATG...CACAGGGATGATGAAGATAAACTGACTTGGAAAGATCGTTTCCCAGGATACTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159984.2
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GAAATCAATCCTGTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTATGATGACGGAGAACTaGCCAATTCCAGAGAGAATG +
Preference number: 5 (lower is better)
Translates to: EINPVTSFASAQPCCGPIMMTEN*PIPERM
Trigger: CATTCTCTCTGGAATTGGCAAGTTCTCCGTCATCAT...AATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTACAGGATTGATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS TCA 90 bp CTTCCTCGATTGTTGCACATCCATAAAGAAACACAATCACGCCTATaGCAGAAGATGGGATCAGGAATGATGTATACAACCCCAGCCAAG +
Preference number: 5 (lower is better)
Translates to: LPRLLHIHKETQSRL*QKMGSGMMYTTPAK
Trigger: CTTGGCTGGGGTTGTATACATCATTCCTGATCCCATCTTCTGTCATAGGCGTGATTGTGTTTCTTTATGGATGTGCAACAATCGAGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GGGACCCTCACTGAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGATGGTCACACATCTCTTaGCTGGGAATATCTTCCTCG +
Preference number: 5 (lower is better)
Translates to: GTLTELLSPKMMVKNKKGWSHIS*LGISSS
Trigger: CGAGGAAGATATTCCCAGCAAAGAGATGTGTGACCA...TCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTCAGTGAGGGTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GAAATCAATCCTGTAACTTCATTTGCATCTGCCCAGCCTTGTTGTGGCCCCATTTTTTTCATCCTGTTGTaGCTGTGTTCAGGAACTCTG +
Preference number: 5 (lower is better)
Translates to: EINPVTSFASAQPCCGPIFFILL*LCSGTL
Trigger: CAGAGTTCCTGAACACAGCAACAACAGGATGAAAAA...AATGGGGCCACAACAAGGCTGGGCAGATGCAAATGAAGTTACAGGATTGATTTC
44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGACCCGAGAAAATTATACCCATCGTGTTGTaGGCTCGAGAACAGGCCGTC +
Preference number: 5 (lower is better)
Translates to: ELLSPKMMVKNKKGPEKIIPIVL*AREQAV
Trigger: GACGGCCTGTTCTCGAGCCAACAACACGATGGGTAT...AATTTTCTCGGGTCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS-3UTR CAA 90 bp GAACTTCTTTCACCTAAGATGATGGTGAAGAATAAGAAAGGACCCGAGAAAATTAGGTTTTTCATCCTGTaGTTGCTGTGTTCAGGAACT +
Preference number: 5 (lower is better)
Translates to: ELLSPKMMVKNKKGPEKIRFFIL*LLCSGT
Trigger: AGTTCCTGAACACAGCAACAACAGGATGAAAAACCT...AATTTTCTCGGGTCCTTTCTTATTCTTCACCATCATCTTAGGTGAAAGAAGTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CCA 72 bp GGCACTTTGAGGTACTGCTGCCCATGTTTGGGGCCCTaGCTTCCTCTGGCCACGGTCCGAGAACTCAGCCGA +
Preference number: 6 (lower is better)
Translates to: GTLRYCCPCLGP*LPLATVRELSR
Trigger: TCGGCTGAGTTCTCGGACCGTGGCCAGAGGAAGCCAGGGCCCCAAACATGGGCAGCAGTACCTCAAAGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS CCA 72 bp GCTGGAATTGTCCCTCTGACCTGGGGCCCGGTGACCTaGCACTTTGAGGTACTGCTGCCCATGTTTGGGGCC +
Preference number: 6 (lower is better)
Translates to: AGIVPLTWGPVT*HFEVLLPMFGA
Trigger: GGCCCCAAACATGGGCAGCAGTACCTCAAAGTGCCAGGTCACCGGGCCCCAGGTCAGAGGGACAATTCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160496.8
CDS CAA 90 bp AGTGGCCCAAGTTCAACATCACCAGGGCCCCCGCCATGGCGCTCCTaGCCTGTCTCCCCATTGGAGATAACAGCCAGAGAGTGTCCAGGG +
Preference number: 6 (lower is better)
Translates to: SGPSSTSPGPPPWRS*PVSPLEITARECPG
Trigger: CCCTGGACACTCTCTGGCTGTTATCTCCAATGGGGAGACAGGCAAGGAGCGCCATGGCGGGGGCCCTGGTGATGTTGAACTTGGGCCACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CCA 72 bp TCGCTGCTCCCTCCTTTCCTCTTCCAGAGCATCCAGTaGCCCAAGTTCAACATCACCAGGGCCCCCGCCATG +
Preference number: 6 (lower is better)
Translates to: SLLPPFLFQSIQ*PKFNITRAPAM
Trigger: CATGGCGGGGGCCCTGGTGATGTTGAACTTGGGCCACTGGATGCTCTGGAAGAGGAAAGGAGGGAGCAGCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CCA 72 bp AGTGGCCCAAGTTCAACATCACCAGGGCCCCCGCCATaGCGCTCCTTGCCTGTCTCCCCATTGGAGATAACA +
Preference number: 6 (lower is better)
Translates to: SGPSSTSPGPPP*RSLPVSPLEIT
Trigger: TGTTATCTCCAATGGGGAGACAGGCAAGGAGCGCCATGGCGGGGGCCCTGGTGATGTTGAACTTGGGCCACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CCA 72 bp AACTCTGCTTCCCTGGCCAGCACCTGCCATGGGGCGTaGATCCGGACAAAGACAGATCCCTGGCTTTTGCTC +
Preference number: 6 (lower is better)
Translates to: NSASLASTCHGA*IRTKTDPWLLL
Trigger: GAGCAAAAGCCAGGGATCTGTCTTTGTCCGGATCCACGCCCCATGGCAGGTGCTGGCCAGGGAAGCAGAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 72 bp AGCCAGAGAGTGTCCAGGGGAGCCGTGACCCAGGTGTaGGCCTCGTTTCCGGTAGTGGTATGCAAGTACATA +
Preference number: 6 (lower is better)
Translates to: SQRVSRGAVTQV*ASFPVVVCKYI
Trigger: TATGTACTTGCATACCACTACCGGAAACGAGGCGCACACCTGGGTCACGGCTCCCCTGGACACTCTCTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 72 bp TTGATCTTCAAGAACTCTGCTTCCCTGGCCAGCACCTaGCATGGGGCGTGGATCCGGACAAAGACAGATCCC +
Preference number: 6 (lower is better)
Translates to: LIFKNSASLAST*HGAWIRTKTDP
Trigger: GGGATCTGTCTTTGTCCGGATCCACGCCCCATGGCAGGTGCTGGCCAGGGAAGCAGAGTTCTTGAAGATCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 72 bp TCAGGAACTCTGGGCTGCAGGGGTGAACTGAGCGTCTaGAGAATGGCGCTGAACTTCTTTGCGATGCTGCCT +
Preference number: 6 (lower is better)
Translates to: SGTLGCRGELSV*RMALNFFAMLP
Trigger: AGGCAGCATCGCAAAGAAGTTCAGCGCCATTCTGCAGACGCTCAGTTCACCCCTGCAGCCCAGAGTTCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 72 bp CCAGCAGCCATCAGGTTGTGCTCAAATTCATCTCGCTaGTCCCTCCTTTCCTCTTCCAGAGCATCCAGTGGC +
Preference number: 6 (lower is better)
Translates to: PAAIRLCSNSSR*SLLSSSRASSG
Trigger: GCCACTGGATGCTCTGGAAGAGGAAAGGAGGGAGCAGCGAGATGAATTTGAGCACAACCTGATGGCTGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 72 bp TCCTTCTCCAGCTCCAGCCCAGCAGCCATCAGGTTGTaGTCAAATTCATCTCGCTGCTCCCTCCTTTCCTCT +
Preference number: 6 (lower is better)
Translates to: SFSSSSPAAIRL*SNSSRCSLLSS
Trigger: AGAGGAAAGGAGGGAGCAGCGAGATGAATTTGAGCACAACCTGATGGCTGCTGGGCTGGAGCTGGAGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 72 bp TTCATCCTGTTGTTGCTGTGTTCAGGAACTCTGGGCTaGAGGGGTGAACTGAGCGTCTGCAGAATGGCGCTG +
Preference number: 6 (lower is better)
Translates to: FILLLLCSGTLG*RGELSVCRMAL
Trigger: CAGCGCCATTCTGCAGACGCTCAGTTCACCCCTGCAGCCCAGAGTTCCTGAACACAGCAACAACAGGATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS TCA 72 bp GTTGTTGCTGTGTTCAGGAACTCTGGGCTGCAGGGGTaGACTGAGCGTCTGCAGAATGGCGCTGAACTTCTT +
Preference number: 6 (lower is better)
Translates to: VVAVFRNSGLQG*TERLQNGAELL
Trigger: AAGAAGTTCAGCGCCATTCTGCAGACGCTCAGTTCACCCCTGCAGCCCAGAGTTCCTGAACACAGCAACAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 72 bp GTGACCCAGGTGTGCGCCTCGTTTCCGGTAGTGGTATaGAAGTACATAGTCGACTTTCCTCTGGTTGTCGTG +
Preference number: 6 (lower is better)
Translates to: VTQVCASFPVVV*KYIVDFPLVVV
Trigger: CACGACAACCAGAGGAAAGTCGACTATGTACTTGCATACCACTACCGGAAACGAGGCGCACACCTGGGTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CCA 72 bp CGTACTTTGGTTTCATATTCAGGCCGAGAGTGTTCCTaGGAACGTTCTTCTTCCTCTTCGATCCCAGTCAGG +
Preference number: 6 (lower is better)
Translates to: RTLVSYSGRECS*ERSSSSSIPVR
Trigger: CCTGACTGGGATCGAAGAGGAAGAAGAACGTTCCCAGGAACACTCTCGGCCTGAATATGAAACCAAAGTACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CCA 72 bp CTGATACAGCAGCTTTCTGTCATTCATGTCATCCCCTaGACTGTCATATTCACCATCATGAAGCGGGTAGGC +
Preference number: 6 (lower is better)
Translates to: LIQQLSVIHVIP*TVIFTIMKRVG
Trigger: GCCTACCCGCTTCATGATGGTGAATATGACAGTCCAGGGGATGACATGAATGACAGAAAGCTGCTGTATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS GCA 72 bp CAGGTGAATTTGCTTCCAGCTTCTGAACCGCTGACTTaGCACTCTCCTTTAACAGTTTCTCTCGTACTTTGG +
Preference number: 6 (lower is better)
Translates to: QVNLLPASEPLT*HSPLTVSLVLW
Trigger: CCAAAGTACGAGAGAAACTGTTAAAGGAGAGTGGCAAGTCAGCGGTTCAGAAGCTGGAAGCAAATTCACCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CAA 72 bp TTGTTTGCTATTAGAGAGTTAATACCCATCGTGTTGTaGGCTCGAGAACAGGCCGTCCGCTTCAGAATCTCG +
Preference number: 6 (lower is better)
Translates to: LFAIRELIPIVL*AREQAVRFRIS
Trigger: CGAGATTCTGAAGCGGACGGCCTGTTCTCGAGCCAACAACACGATGGGTATTAACTCTCTAATAGCAAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CAA 72 bp GACTTGCCACTCTCCTTTAACAGTTTCTCTCGTACTTaGGTTTCATATTCAGGCCGAGAGTGTTCCTGGGAA +
Preference number: 6 (lower is better)
Translates to: DLPLSFNSFSRT*VSYSGRECSWE
Trigger: TTCCCAGGAACACTCTCGGCCTGAATATGAAACCAAAGTACGAGAGAAACTGTTAAAGGAGAGTGGCAAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS CAA 72 bp GACTTGCCACTCTCCTTTAACAGTTTCTCTCGTACTTaGGTTTCATATTCAGGCCGAGAGTGTTCTTCTTCC +
Preference number: 6 (lower is better)
Translates to: DLPLSFNSFSRT*VSYSGRECSSS
Trigger: GGAAGAAGAACACTCTCGGCCTGAATATGAAACCAAAGTACGAGAGAAACTGTTAAAGGAGAGTGGCAAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159984.2
CDS GCA 72 bp ACACATCTCTTTGCTGGGAATATCTTCCTCGATTGTTaGACATCCATAAAGAAACACAATCACGCCTATGAC +
Preference number: 6 (lower is better)
Translates to: THLFAGNIFLDC*TSIKKHNHAYD
Trigger: GTCATAGGCGTGATTGTGTTTCTTTATGGATGTGCAACAATCGAGGAAGATATTCCCAGCAAAGAGATGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8
CDS TCA 72 bp TTGTTGCACATCCATAAAGAAACACAATCACGCCTATaGCAGAAGATGGGATCAGGAATGATGTATACAACC +
Preference number: 6 (lower is better)
Translates to: LLHIHKETQSRL*QKMGSGMMYTT
Trigger: GGTTGTATACATCATTCCTGATCCCATCTTCTGTCATAGGCGTGATTGTGTTTCTTTATGGATGTGCAACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159984.2
ENSMUST00000160496.8
ENSMUST00000161619.8