RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANKS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024219

Ensembl transcript IDs: ENSMUST00000025058.15, ENSMUST00000088027.7, ENSMUST00000114842.9, ENSMUST00000139173.3, ENSMUST00000232872.2, ENSMUST00000233058.2, ENSMUST00000233298.2, ENSMUST00000233309.2, ENSMUST00000233525.2, ENSMUST00000233866.2, ENSMUST00000233869.2

Found 1028 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCTaGCCGGAGACCCTGAAGCCTGCTCACGTACCTGTGGGCCAGGGC +
Preference number: 1 (lower is better)
Translates to: RCSGLASCPQDQDGC*PETLKPAHVPVGQG
Trigger: GCCCTGGCCCACAGGTACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 90 bp GGCAGGCCCAGGCCGAGCAGGCGACAGGAGGTCCTACAGCAGGACTaGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGG +
Preference number: 1 (lower is better)
Translates to: GRPRPSRRQEVLQQD*AWVFSVADEALGAG
Trigger: CCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTCCTGCTGTAGGACCTCCTGTCGCCTGCTCGGCCTGGGCCTGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR GCA 90 bp CATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTaGCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGA +
Preference number: 1 (lower is better)
Translates to: HPEFRSPLLDAWRLR*LQGRVLQVSAGPGR
Trigger: TCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR GCA 90 bp AACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTaGTGCCCGGAGACCCTGAAGCCTGCTCACGTACCTGTGGGCCAG +
Preference number: 1 (lower is better)
Translates to: NRCSGLASCPQDQDG*CPETLKPAHVPVGQ
Trigger: CTGGCCCACAGGTACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 90 bp CCCAGGCCGAGCAGGCGACAGGAGGTCCTACAGCAGGACTGGGCCTaGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGA +
Preference number: 1 (lower is better)
Translates to: PRPSRRQEVLQQDWA*VFSVADEALGAGAG
Trigger: TCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTCCTGCTGTAGGACCTCCTGTCGCCTGCTCGGCCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR GCA 90 bp GTGGGCAACCTCAGAGTCCAAAGTCCCCTGCTGGGACACAGGGCCTaGAGGGCGGCAGGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGG +
Preference number: 1 (lower is better)
Translates to: VGNLRVQSPLLGHRA*RAAGQPRGKQGILW
Trigger: CCACAGGATCCCTTGCTTGCCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGGACTCTGAGGTTGCCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 90 bp TCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATaGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTACCTGTGGG +
Preference number: 1 (lower is better)
Translates to: SQPLFRPGLLSPGPG*VLPGDPEACSRTCG
Trigger: CCCACAGGTACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 90 bp GCCTGCAGGGCGGCAGGCCAGCCAAGAGGCAAGCAAGGGATCCTGTaGCCACTGCATGAGGGACTGGGCACGTCTTGCCATTCCCACCAG +
Preference number: 1 (lower is better)
Translates to: ACRAAGQPRGKQGIL*PLHEGLGTSCHSHQ
Trigger: CTGGTGGGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCCTGCCGCCCTGCAGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 90 bp GCGGAGGCCCTGGCTCCTTCCCAGAGAGGAGCTGTACCCAGCAGCTaGTGCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAG +
Preference number: 1 (lower is better)
Translates to: AEALAPSQRGAVPSS*CTECSRQTARRSTE
Trigger: CTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGCAGCAGCTGCTGGGTACAGCTCCTCTCTGGGAAGGAGCCAGGGCCTCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 90 bp GGGCGGCAGGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTaGATGAGGGACTGGGCACGTCTTGCCATTCCCACCAGAACGGCT +
Preference number: 1 (lower is better)
Translates to: GRQASQEASKGSCGH*MRDWARLAIPTRTA
Trigger: AGCCGTTCTGGTGGGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCCTGCCGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 90 bp GAGGCCCTGGCTCCTTCCCAGAGAGGAGCTGTACCCAGCAGCTGCTaGACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGA +
Preference number: 1 (lower is better)
Translates to: EALAPSQRGAVPSSC*TECSRQTARRSTEG
Trigger: TCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGCAGCAGCTGCTGGGTACAGCTCCTCTCTGGGAAGGAGCCAGGGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 90 bp GCTCAGAAAGGCACAAGGAAAGGCAGGCAGCCGAAGGGCCCACCCTaGCATATGGCTCGGGTGCTGACTGGCTCGGGCAGACACTGCACT +
Preference number: 1 (lower is better)
Translates to: AQKGTRKGRQPKGPP*HMARVLTGSGRHCT
Trigger: AGTGCAGTGTCTGCCCGAGCCAGTCAGCACCCGAGCCATATGCCAGGGTGGGCCCTTCGGCTGCCTGCCTTTCCTTGTGCCTTTCTGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR TCA 90 bp CCTCGGGCGTGTCCTCATGGCTCTAGCCAGGCCAAGAGCCCATTGTaGAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCT +
Preference number: 1 (lower is better)
Translates to: PRACPHGSSQAKSPL*RQRLPEGFRPISGP
Trigger: AGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCTTGGCCTGGCTAGAGCCATGAGGACACGCCCGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR GCA 90 bp ACATGGAAAGGGACACAGAGCAGACAAAGGTCCCTGCCTCCCTGGTaGCCTCCACAGCCTACAGCCCACTGCTGCTCCTGGCCCATCTGC +
Preference number: 1 (lower is better)
Translates to: TWKGTQSRQRSLPPW*PPQPTAHCCSWPIC
Trigger: GCAGATGGGCCAGGAGCAGCAGTGGGCTGTAGGCTGTGGAGGGCACCAGGGAGGCAGGGACCTTTGTCTGCTCTGTGTCCCTTTCCATGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 90 bp CAAGGCGGAGGACATGGAAAGGGACACAGAGCAGACAAAGGTCCCTaGCTCCCTGGTGCCCTCCACAGCCTACAGCCCACTGCTGCTCCT +
Preference number: 1 (lower is better)
Translates to: QGGGHGKGHRADKGP*LPGALHSLQPTAAP
Trigger: AGGAGCAGCAGTGGGCTGTAGGCTGTGGAGGGCACCAGGGAGGCAGGGACCTTTGTCTGCTCTGTGTCCCTTTCCATGTCCTCCGCCTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 90 bp CCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGATTaGAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGA +
Preference number: 1 (lower is better)
Translates to: PAFHSEQPQGGSAQD*SSQPLFRPGLLSPG
Trigger: TCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 90 bp GGCTCGGGTGCTGACTGGCTCGGGCAGACACTGCACTATACTGTCTaGACCACGGCCACGGGGATCACTTCTGTCTCCTGCCATCTAGAC +
Preference number: 1 (lower is better)
Translates to: GSGADWLGQTLHYTV*TTATGITSVSCHLD
Trigger: GTCTAGATGGCAGGAGACAGAAGTGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCAGTGTCTGCCCGAGCCAGTCAGCACCCGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 90 bp CCACCCTGGCATATGGCTCGGGTGCTGACTGGCTCGGGCAGACACTaGACTATACTGTCTGCACCACGGCCACGGGGATCACTTCTGTCT +
Preference number: 1 (lower is better)
Translates to: PPWHMARVLTGSGRH*TILSAPRPRGSLLS
Trigger: AGACAGAAGTGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCAGTGTCTGCCCGAGCCAGTCAGCACCCGAGCCATATGCCAGGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 90 bp CCCAGGCGAGGAGAGCAACCTCAAAGGGAGCTACTGTGGTTCTGCTaGAAGACCACCCTCACCTCACAGTGCCTGGCTTTGGGGGCCTCA +
Preference number: 1 (lower is better)
Translates to: PRRGEQPQRELLWFC*KTTLTSQCLALGAS
Trigger: TGAGGCCCCCAAAGCCAGGCACTGTGAGGTGAGGGTGGTCTTCCAGCAGAACCACAGTAGCTCCCTTTGAGGTTGCTCTCCTCGCCTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 90 bp TCCATGGCGCTAGCTCCCAGGCAGGTGCTGGGGATTGCTGGACGATaGCTGTCTCAGGACCCCACCACCAGAGGAAGTATGAGAACGCTC +
Preference number: 1 (lower is better)
Translates to: SMALAPRQVLGIAGR*LSQDPTTRGSMRTL
Trigger: GAGCGTTCTCATACTTCCTCTGGTGGTGGGGTCCTGAGACAGCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAGCTAGCGCCATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 90 bp GCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAGCAGCATaGGGACAGCTGCCTGCGGCAGTGCTAATGGGGACAGGTGAGTAC +
Preference number: 1 (lower is better)
Translates to: ATSPFQHGSIGPAAA*GQLPAAVLMGTGEY
Trigger: GTACTCACCTGTCCCCATTAGCACTGCCGCAGGCAGCTGTCCCCATGCTGCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 90 bp GTCCAAGGGCAGCTCCACTCCGAGAAGGAAGAAGGTGCACTTGTGTaGAGGGCACACCTCAGTGAGCTGGATTCCGGAACCAGGCCCACA +
Preference number: 1 (lower is better)
Translates to: VQGQLHSEKEEGALV*RAHLSELDSGTRPT
Trigger: TGTGGGCCTGGTTCCGGAATCCAGCTCACTGAGGTGTGCCCTGCACACAAGTGCACCTTCTTCCTTCTCGGAGTGGAGCTGCCCTTGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 90 bp GAGATTCAGCTCCATGGCGCTAGCTCCCAGGCAGGTGCTGGGGATTaGTGGACGATGGCTGTCTCAGGACCCCACCACCAGAGGAAGTAT +
Preference number: 1 (lower is better)
Translates to: EIQLHGASSQAGAGD*WTMAVSGPHHQRKY
Trigger: ATACTTCCTCTGGTGGTGGGGTCCTGAGACAGCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAGCTAGCGCCATGGAGCTGAATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 90 bp ATTCAGCTCCATGGCGCTAGCTCCCAGGCAGGTGCTGGGGATTGCTaGACGATGGCTGTCTCAGGACCCCACCACCAGAGGAAGTATGAG +
Preference number: 1 (lower is better)
Translates to: IQLHGASSQAGAGDC*TMAVSGPHHQRKYE
Trigger: CTCATACTTCCTCTGGTGGTGGGGTCCTGAGACAGCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAGCTAGCGCCATGGAGCTGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR TCA 90 bp CTCCGAGAAGGAAGAAGGTGCACTTGTGTGCAGGGCACACCTCAGTaGGCTGGATTCCGGAACCAGGCCCACAGCACAGAAAGGGGCCAA +
Preference number: 1 (lower is better)
Translates to: LREGRRCTCVQGTPQ*AGFRNQAHSTERGQ
Trigger: TTGGCCCCTTTCTGTGCTGTGGGCCTGGTTCCGGAATCCAGCTCACTGAGGTGTGCCCTGCACACAAGTGCACCTTCTTCCTTCTCGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 90 bp AAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTaGCATTCCCACCAGAACGGCTCCTTCACAGTTCAGGCACAGCCT +
Preference number: 1 (lower is better)
Translates to: KQGILWPLHEGLGTS*HSHQNGSFTVQAQP
Trigger: AGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTGGTGGGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 90 bp GCATTGCTATCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATaGCTCCATTGGCCCAGCAGCAGCATGGGGACAGCTGCCTGCGGC +
Preference number: 1 (lower is better)
Translates to: ALLSMPQQSHFSLPT*LHWPSSSMGTAACG
Trigger: GCCGCAGGCAGCTGTCCCCATGCTGCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGATAGCAATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR TCA 90 bp GCATGGCTGGTACCAACCTTCCCCCTACAGAAAGTCTGTCCCTGGTaGAGCCATATCACCGGGCCTGACCAGGAGAGAAACCAGCACCTG +
Preference number: 1 (lower is better)
Translates to: AWLVPTFPLQKVCPW*SHITGPDQERNQHL
Trigger: CAGGTGCTGGTTTCTCTCCTGGTCAGGCCCGGTGATATGGCTTCACCAGGGACAGACTTTCTGTAGGGGGAAGGTTGGTACCAGCCATGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTaGCCCAGCAGCAGCATGGGGACAGCTGCCTGCGGCAGTGCTAAT +
Preference number: 1 (lower is better)
Translates to: SMPQQSHFSLPTWLH*PSSSMGTAACGSAN
Trigger: ATTAGCACTGCCGCAGGCAGCTGTCCCCATGCTGCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 90 bp GTCACAGTGGTGGTTGGGTCAGGAAAGGTGACAACTGGTAGCTCTTaGCATCCAGCTGTGACCCAGGCGAGGAGAGCAACCTCAAAGGGA +
Preference number: 1 (lower is better)
Translates to: VTVVVGSGKVTTGSS*HPAVTQARRATSKG
Trigger: TCCCTTTGAGGTTGCTCTCCTCGCCTGGGTCACAGCTGGATGCCAAGAGCTACCAGTTGTCACCTTTCCTGACCCAACCACCACTGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 90 bp AAGCAGGGTGGCTCCTCAGTGGCTCAGCTTGGCAGAAGCAAACAGTaGGGGAGGAGAGAGTTAACCAATGAGTCTGCACAAGGCGGAGGA +
Preference number: 1 (lower is better)
Translates to: KQGGSSVAQLGRSKQ*GRRELTNESAQGGG
Trigger: TCCTCCGCCTTGTGCAGACTCATTGGTTAACTCTCTCCTCCCCCACTGTTTGCTTCTGCCAAGCTGAGCCACTGAGGAGCCACCCTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 90 bp CTCATGGCTCTAGCCAGGCCAAGAGCCCATTGTGAAGGCAGAGGCTaGCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAG +
Preference number: 1 (lower is better)
Translates to: LMALARPRAHCEGRG*LRVSGPSQVLSCLK
Trigger: CTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCTTGGCCTGGCTAGAGCCATGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR CCA 90 bp TGCCATTCCCACCAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTaGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTT +
Preference number: 1 (lower is better)
Translates to: CHSHQNGSFTVQAQP*FHTSAKGRAFHVAL
Trigger: AAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTGGTGGGAATGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 90 bp TCACGGCTCATAGTATCAGAGCCAACTCATGCACAAGGGCATGGCTaGTACCAACCTTCCCCCTACAGAAAGTCTGTCCCTGGTGAAGCC +
Preference number: 1 (lower is better)
Translates to: SRLIVSEPTHAQGHG*YQPSPYRKSVPGEA
Trigger: GGCTTCACCAGGGACAGACTTTCTGTAGGGGGAAGGTTGGTACCAGCCATGCCCTTGTGCATGAGTTGGCTCTGATACTATGAGCCGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 90 bp AGAAACCGAGCTGGAAGCCCAGGGGGTGCACACTGTGCAGTGAGGTaGTCTATGCTGATGCACAGGTTGGTTATGTTTGGTACCACAAGG +
Preference number: 1 (lower is better)
Translates to: RNRAGSPGGAHCAVR*SMLMHRLVMFGTTR
Trigger: CCTTGTGGTACCAAACATAACCAACCTGTGCATCAGCATAGACCACCTCACTGCACAGTGTGCACCCCCTGGGCTTCCAGCTCGGTTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
3UTR TCA 90 bp TCAGCTTGGCAGAAGCAAACAGTGGGGGAGGAGAGAGTTAACCAATaGGTCTGCACAAGGCGGAGGACATGGAAAGGGACACAGAGCAGA +
Preference number: 1 (lower is better)
Translates to: SAWQKQTVGEERVNQ*VCTRRRTWKGTQSR
Trigger: TCTGCTCTGTGTCCCTTTCCATGTCCTCCGCCTTGTGCAGACTCATTGGTTAACTCTCTCCTCCCCCACTGTTTGCTTCTGCCAAGCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR TCA 90 bp TTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTaGAAAGGAGAGACCCACCCGGAGGAGGAGAGGAATTTCTTGACT +
Preference number: 1 (lower is better)
Translates to: FTQAPKAEPSMWHLS*KGETHPEEERNFLT
Trigger: AGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTCTCTCCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 90 bp AGTCCCCAGCTGGCAAGCTGCAGTCATAACTGGCATTGCTATCAATaGCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGC +
Preference number: 1 (lower is better)
Translates to: SPQLASCSHNWHCYQ*PNKATSPFQHGSIG
Trigger: GCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGATAGCAATGCCAGTTATGACTGCAGCTTGCCAGCTGGGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 90 bp TATGGAAGTGAGAAACCGAGCTGGAAGCCCAGGGGGTGCACACTGTaGAGTGAGGTGGTCTATGCTGATGCACAGGTTGGTTATGTTTGG +
Preference number: 1 (lower is better)
Translates to: YGSEKPSWKPRGCTL*SEVVYADAQVGYVW
Trigger: CCAAACATAACCAACCTGTGCATCAGCATAGACCACCTCACTGCACAGTGTGCACCCCCTGGGCTTCCAGCTCGGTTTCTCACTTCCATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
3UTR CCA 90 bp GAGAGAGGCAGATCCAGTCCCCAGCTGGCAAGCTGCAGTCATAACTaGCATTGCTATCAATGCCCCAACAAAGCCACTTCTCCCTTCCAA +
Preference number: 1 (lower is better)
Translates to: ERGRSSPQLASCSHN*HCYQCPNKATSPFQ
Trigger: TTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGATAGCAATGCCAGTTATGACTGCAGCTTGCCAGCTGGGGACTGGATCTGCCTCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 90 bp CAACAAGCATCAGAGAGAGGCAGATCCAGTCCCCAGCTGGCAAGCTaGAGTCATAACTGGCATTGCTATCAATGCCCCAACAAAGCCACT +
Preference number: 1 (lower is better)
Translates to: QQASERGRSSPQLAS*SHNWHCYQCPNKAT
Trigger: AGTGGCTTTGTTGGGGCATTGATAGCAATGCCAGTTATGACTGCAGCTTGCCAGCTGGGGACTGGATCTGCCTCTCTCTGATGCTTGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 90 bp ACAACAGTCAACAAGCATCAGAGAGAGGCAGATCCAGTCCCCAGCTaGCAAGCTGCAGTCATAACTGGCATTGCTATCAATGCCCCAACA +
Preference number: 1 (lower is better)
Translates to: TTVNKHQREADPVPS*QAAVITGIAINAPT
Trigger: TGTTGGGGCATTGATAGCAATGCCAGTTATGACTGCAGCTTGCCAGCTGGGGACTGGATCTGCCTCTCTCTGATGCTTGTTGACTGTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR TCA 90 bp AGATTAAATAACATTTTTCTTACAATCCAGTCCCACTGTCCACCATaGGCAGTAACTCCCATGACCTGCGGCGCTGGTCCCGGCACCTCA +
Preference number: 1 (lower is better)
Translates to: RLNNIFLTIQSHCPP*AVTPMTCGAGPGTS
Trigger: TGAGGTGCCGGGACCAGCGCCGCAGGTCATGGGAGTTACTGCTCATGGTGGACAGTGGGACTGGATTGTAAGAAAAATGTTATTTAATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR TCA 90 bp GAAGTCAAGGCAGGAACTTGGAGGCAGAAACTGAAGCAGAAGGCATaGAGGAACACTGCTTCCTGGCTTGTTCAATACAGCTTGCTCGGT +
Preference number: 1 (lower is better)
Translates to: EVKAGTWRQKLKQKA*RNTASWLVQYSLLG
Trigger: ACCGAGCAAGCTGTATTGAACAAGCCAGGAAGCAGTGTTCCTTCATGCCTTCTGCTTCAGTTTCTGCCTCCAAGTTCCTGCCTTGACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR GCA 90 bp AGGAACTTGGAGGCAGAAACTGAAGCAGAAGGCATGAAGGAACACTaGTTCCTGGCTTGTTCAATACAGCTTGCTCGGTCTGCTTTCTTA +
Preference number: 1 (lower is better)
Translates to: RNLEAETEAEGMKEH*FLACSIQLARSAFL
Trigger: TAAGAAAGCAGACCGAGCAAGCTGTATTGAACAAGCCAGGAAGCAGTGTTCCTTCATGCCTTCTGCTTCAGTTTCTGCCTCCAAGTTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR TCA 90 bp CACGGGAGAGTCACGAGAACACAGTATTTTGTAGGCTTAGAGTTTTaGAAACCAGAGTCTCCAAGGAAAGCAGGACTATCCACGTTGGCA +
Preference number: 1 (lower is better)
Translates to: HGRVTRTQYFVGLEF*KPESPRKAGLSTLA
Trigger: TGCCAACGTGGATAGTCCTGCTTTCCTTGGAGACTCTGGTTTTCAAAACTCTAAGCCTACAAAATACTGTGTTCTCGTGACTCTCCCGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR CCA 90 bp CTGTGCAGTGAGGTGGTCTATGCTGATGCACAGGTTGGTTATGTTTaGTACCACAAGGTGTTTATAATTCAAACAAAATCGGACAGATTA +
Preference number: 1 (lower is better)
Translates to: LCSEVVYADAQVGYV*YHKVFIIQTKSDRL
Trigger: TAATCTGTCCGATTTTGTTTGAATTATAAACACCTTGTGGTACCAAACATAACCAACCTGTGCATCAGCATAGACCACCTCACTGCACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGCTTCAGTGTTGCAGATaGGGCTCTCGGGGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQELQCCR*GSRGWG
Trigger: GCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAG...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGGCAGGTGCTGGGGATTaGTGGACGATGGCTGTCTCA +
Preference number: 2 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQEAGAGD*WTMAVS
Trigger: TGAGACAGCCATCGTCCAGCAATCCCCAGCACCTGC...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp AAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGCAACTTCAGTGTTGCAGATaGGGCTCTCGGGGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: KSPAGTQGLQGGRPAKRQLQCCR*GSRGWG
Trigger: GCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAG...TTGCCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp CCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGCCCCACGGCTACTTCTaGAAAGCAGGGTGGCTCCTC +
Preference number: 2 (lower is better)
Translates to: PKSPAGTQGLQGGRPAKRPHGYF*KAGWLL
Trigger: GAGGAGCCACCCTGCTTTGCAGAAGTAGCCGTGGGG...CCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp GGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCTCCAGGGCAGGGTCCTaGAGGTGTCGGCAGGCCCAG +
Preference number: 2 (lower is better)
Translates to: GQPRGKQGILWPLHEGLGSRAGS*RCRQAQ
Trigger: CTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGA...GCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp GCCCAGGCCGAGCAGGCGACAGGAGGTCCTACAGCAGGACTGGGCCTGGGTCTTCTTGGCATCCAGCTGTaGCCCAGGCGAGGAGAGCAA +
Preference number: 2 (lower is better)
Translates to: AQAEQATGGPTAGLGLGLLGIQL*PRRGEQ
Trigger: TTGCTCTCCTCGCCTGGGTCACAGCTGGATGCCAAG...AAGACCCAGGCCCAGTCCTGCTGTAGGACCTCCTGTCGCCTGCTCGGCCTGGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp CCTCAGAGTCCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCACCAAGGGTCTCTCTGTaGGCCGAGGGAGGCTTTCCA +
Preference number: 2 (lower is better)
Translates to: PQSPKSPAGTQGLQGGRPPRVSL*AEGGFP
Trigger: TGGAAAGCCTCCCTCGGCTCACAGAGAGACCCTTGG...TGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGGACTCTGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp GCCCAGGCCGAGCAGGCGACAGGAGGTCCTACAGCAGGACTGGGCCTGGGTCTTCCCCACGGCTACTTCTaGAAAGCAGGGTGGCTCCTC +
Preference number: 2 (lower is better)
Translates to: AQAEQATGGPTAGLGLGLPHGYF*KAGWLL
Trigger: GAGGAGCCACCCTGCTTTGCAGAAGTAGCCGTGGGG...AAGACCCAGGCCCAGTCCTGCTGTAGGACCTCCTGTCGCCTGCTCGGCCTGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTCCGACCCCAGCAGCCTaGCCCTCACTGCTCCTTAAG +
Preference number: 2 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRPTPAA*PSLLLK
Trigger: CTTAAGGAGCAGTGAGGGGCAGGCTGCTGGGGTCGG...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp CAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTCTGGCCTTCAGTGTTGCAGATaGGGCTCTCGGGGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: QCSLGFAPTAEPTELTSGLQCCR*GSRGWG
Trigger: GCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAG...GCCAGAGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp GTGCCTATGAGGCCCCCTTCAAAGGCAAGTCACCCCCTCCCGCAGCTGTCCTCAAGGGAGGTGGGGCCTTaGTGGCCGCAGCTGAAGGAG +
Preference number: 2 (lower is better)
Translates to: VPMRPPSKASHPLPQLSSREVGP*WPQLKE
Trigger: CTCCTTCAGCTGCGGCCACCAAGGCCCCACCTCCCT...TGAGGACAGCTGCGGGAGGGGGTGACTTGCCTTTGAAGGGGGCCTCATAGGCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GCAGGGCGGCAGGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGGGGATTGCTGGACGATaGCTGTCTCAGGACCCCACC +
Preference number: 2 (lower is better)
Translates to: AGRQASQEASKGSCGHCMGIAGR*LSQDPT
Trigger: GGTGGGGTCCTGAGACAGCCATCGTCCAGCAATCCC...CATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCCTGCCGCCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp GGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCCAGGGCACACCTCAGTaGGCTGGATTCCGGAACCAG +
Preference number: 2 (lower is better)
Translates to: GQPRGKQGILWPLHEGLGQGTPQ*AGFRNQ
Trigger: CTGGTTCCGGAATCCAGCTCACTGAGGTGTGCCCTG...GCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTTGTGAAGGCAGAGGCTaGCTGAGGGTTTCAGGCCCA +
Preference number: 2 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRCEGRG*LRVSGP
Trigger: TGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACA...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp GCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTGGCCCAGCAGCAGCATaGGGACAGCTGCCTGCGGCA +
Preference number: 2 (lower is better)
Translates to: ALNAAGRQPAGLQRETLLGPAAA*GQLPAA
Trigger: TGCCGCAGGCAGCTGTCCCCATGCTGCTGCTGGGCC...AAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp GTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCACTTGGTGGCCGCAGCTaGAGGAGAGTTGAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: VSSARCLASSLPPGQGPALGGRS*RRVESR
Trigger: TCTGCTCTCAACTCTCCTTCAGCTGCGGCCACCAAG...TGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp GTCTACAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTGGTGTAAGCAGGAGCTaGTGCCAGGAGGGCAGGTCC +
Preference number: 2 (lower is better)
Translates to: VYSVPWALRPLQSPLSSPGVSRS*CQEGRS
Trigger: GGACCTGCCCTCCTGGCAGCAGCTCCTGCTTACACC...AGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTGTAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp CCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCCTACAGCCCACTGCTaGTCCTGGCCCATCTGCTCA +
Preference number: 2 (lower is better)
Translates to: PQGGSAQDCSSQPLFRPGPTAHC*SWPICS
Trigger: TGAGCAGATGGGCCAGGAGCAGCAGTGGGCTGTAGG...GCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTTCCCTGCCTCCCTGGTaGCCTCCACAGCCTACAGCC +
Preference number: 2 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSSLPPW*PPQPTA
Trigger: GGCTGTAGGCTGTGGAGGGCACCAGGGAGGCAGGGA...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp AAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGCAAGGCAGAAGCAAACAGTaGGGGAGGAGAGAGTTAACC +
Preference number: 2 (lower is better)
Translates to: KSPAGTQGLQGGRPAKRQGRSKQ*GRRELT
Trigger: GGTTAACTCTCTCCTCCCCCACTGTTTGCTTCTGCC...TTGCCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp ACTGGCTCGGGCAGACACTGCACTATACTGTCTGCACCACGGCCACGGGGATCACTTGGCATCCAGCTGTaGCCCAGGCGAGGAGAGCAA +
Preference number: 2 (lower is better)
Translates to: TGSGRHCTILSAPRPRGSLGIQL*PRRGEQ
Trigger: TTGCTCTCCTCGCCTGGGTCACAGCTGGATGCCAAG...TGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCAGTGTCTGCCCGAGCCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp AGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCCGACCCCAGCAGCCTaGCCCTCACTGCTCCTTAAG +
Preference number: 2 (lower is better)
Translates to: SRQTARRSTEGNPAFHSEPTPAA*PSLLLK
Trigger: CTTAAGGAGCAGTGAGGGGCAGGCTGCTGGGGTCGG...CTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp GCTAGCTCCCAGGCAGGTGCTGGGGATTGCTGGACGATGGCTGTCTCAGGACCCGTGGCAAAGGCACAGTaGGGTAGCGGAGATAGAGCA +
Preference number: 2 (lower is better)
Translates to: ASSQAGAGDCWTMAVSGPVAKAQ*GSGDRA
Trigger: TGCTCTATCTCCGCTACCCCACTGTGCCTTTGCCAC...GGGTCCTGAGACAGCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAGCTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp CAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCAGAGGTGGGGCCTTGGTaGCCGCAGCTGAAGGAGAGT +
Preference number: 2 (lower is better)
Translates to: QTARRSTEGNPAFHSEQPEVGPW*PQLKES
Trigger: ACTCTCCTTCAGCTGCGGCCACCAAGGCCCCACCTC...TGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTCTCCCAGGCAGGTGCTaGGGATTGCTGGACGATGGC +
Preference number: 2 (lower is better)
Translates to: ALNAAGRQPAGLQRETLLLPGRC*GLLDDG
Trigger: GCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAG...AAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCCTCAGTGGCTCAGCTTaGCAGAAGCAAACAGTGGGG +
Preference number: 2 (lower is better)
Translates to: GQPRGKQGILWPLHEGLGLSGSA*QKQTVG
Trigger: CCCCACTGTTTGCTTCTGCCAAGCTGAGCCACTGAG...GCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CAA 90 bp ACCCTGTCCAAGGGCAGCTCCACTCCGAGAAGGAAGAAGGTGCACTaGTGTGCAGGGCACACCTCAGTGAGCTGGATTCCGGAACCAGGC +
Preference number: 2 (lower is better)
Translates to: TLSKGSSTPRRKKVH*CAGHTSVSWIPEPG
Trigger: GCCTGGTTCCGGAATCCAGCTCACTGAGGTGTGCCCTGCACACAAGTGCACCTTCTTCCTTCTCGGAGTGGAGCTGCCCTTGGACAGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTCTTGGCATCCAGCTGTaGCCCAGGCGAGGAGAGCAA +
Preference number: 2 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSLGIQL*PRRGEQ
Trigger: TTGCTCTCCTCGCCTGGGTCACAGCTGGATGCCAAG...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp TTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGAAAGTCTGTCCCTGGTaGAGCCATATCACCGGGCCT +
Preference number: 2 (lower is better)
Translates to: LQLTTAVQAWPPVPRTRMKVCPW*SHITGP
Trigger: AGGCCCGGTGATATGGCTTCACCAGGGACAGACTTT...CATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp CAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAGGGCACACCTCAGTaGGCTGGATTCCGGAACCAG +
Preference number: 2 (lower is better)
Translates to: QTARRSTEGNPAFHSEQPQGTPQ*AGFRNQ
Trigger: CTGGTTCCGGAATCCAGCTCACTGAGGTGTGCCCTG...TGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp TCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGGTGTAAGCAGGAGCTaGTGCCAGGAGGGCAGGTCC +
Preference number: 2 (lower is better)
Translates to: SWTGHFLGHPEFRSPLLDGVSRS*CQEGRS
Trigger: GGACCTGCCCTCCTGGCAGCAGCTCCTGCTTACACC...ATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp CCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGTCCCTGCCTCCCTGGTaGCCTCCACAGCCTACAGCC +
Preference number: 2 (lower is better)
Translates to: PWFHTSAKGRAFHVALVLSLPPW*PPQPTA
Trigger: GGCTGTAGGCTGTGGAGGGCACCAGGGAGGCAGGGA...CAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp AGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCACAGTGCCTGGCTTTaGGGGCCTCAACCCCACTCT +
Preference number: 2 (lower is better)
Translates to: SRQTARRSTEGNPAFHSEHSAWL*GPQPHS
Trigger: AGAGTGGGGTTGAGGCCCCCAAAGCCAGGCACTGTG...CTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GTCTACAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTGAGCAGCTGTGTGTATaGCATCCTGGCACTGGGAGG +
Preference number: 2 (lower is better)
Translates to: VYSVPWALRPLQSPLSSPEQLCV*HPGTGR
Trigger: CCTCCCAGTGCCAGGATGCCATACACACAGCTGCTC...AGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTGTAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp TGCACTATACTGTCTGCACCACGGCCACGGGGATCACTTCTGTCTCCTGCCATCCTCCCAGGCAGGTGCTaGGGATTGCTGGACGATGGC +
Preference number: 2 (lower is better)
Translates to: CTILSAPRPRGSLLSPAILPGRC*GLLDDG
Trigger: GCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAG...GATGGCAGGAGACAGAAGTGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GGGAAGGGGCTCGGCACAACTGAGCCAGGCACCAAGGGTCTCTCTGTGAGCCGAACAAGGCGGAGGACATaGAAAGGGACACAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: GKGLGTTEPGTKGLSVSRTRRRT*KGTQSR
Trigger: TCTGCTCTGTGTCCCTTTCCATGTCCTCCGCCTTGT...TCGGCTCACAGAGAGACCCTTGGTGCCTGGCTCAGTTGTGCCGAGCCCCTTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp CAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGCAGCTGAAGGAGAGTTaGGAGCAGAAGATCGGGTGG +
Preference number: 2 (lower is better)
Translates to: QRETLLSTLSSHKVAVPRQLKES*EQKIGW
Trigger: CCACCCGATCTTCTGCTCTCAACTCTCCTTCAGCTG...CCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp TGGGCACGTCTTGCCATTCCCACCAGAACGGCTCCTTCACAGTTCAGGCACAGCGCAGGTGCTGGGGATTaGTGGACGATGGCTGTCTCA +
Preference number: 2 (lower is better)
Translates to: WARLAIPTRTAPSQFRHSAGAGD*WTMAVS
Trigger: TGAGACAGCCATCGTCCAGCAATCCCCAGCACCTGC...GCTGTGCCTGAACTGTGAAGGAGCCGTTCTGGTGGGAATGGCAAGACGTGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp GCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACAGCCTGCCCCTCACTaGTCCTTAAGCCCAGGAGGT +
Preference number: 2 (lower is better)
Translates to: AFHSEQPQGGSAQDCSSQQPAPH*SLSPGG
Trigger: ACCTCCTGGGCTTAAGGAGCAGTGAGGGGCAGGCTG...TTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCGAGGTGGGGCCTTGGTaGCCGCAGCTGAAGGAGAGT +
Preference number: 2 (lower is better)
Translates to: SMPQQSHFSLPTWLHWPSEVGPW*PQLKES
Trigger: ACTCTCCTTCAGCTGCGGCCACCAAGGCCCCACCTC...GCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTGAGCAGCTGTGTGTATaGCATCCTGGCACTGGGAGG +
Preference number: 2 (lower is better)
Translates to: ALNAAGRQPAGLQRETLLEQLCV*HPGTGR
Trigger: CCTCCCAGTGCCAGGATGCCATACACACAGCTGCTC...AAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACGGGATTGCTGGACGATaGCTGTCTCAGGACCCCACC +
Preference number: 2 (lower is better)
Translates to: AVLMGTGEYSGVPHTRNYGIAGR*LSQDPT
Trigger: GGTGGGGTCCTGAGACAGCCATCGTCCAGCAATCCC...GTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp TCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCCCAACATGGCTCCATTaGCCCAGCAGCAGCATGGGG +
Preference number: 2 (lower is better)
Translates to: SGTALVSHKRQRQSLPCGPTWLH*PSSSMG
Trigger: CCCCATGCTGCTGCTGGGCCAATGGAGCCATGTTGG...GCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAACCGCTGTTCAGGCCTaGCCTCCTGTCCCCAGGACC +
Preference number: 2 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKTAVQA*PPVPRT
Trigger: GGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGT...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp GCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTAAAGTCTGTCCCTGGTaGAGCCATATCACCGGGCCT +
Preference number: 2 (lower is better)
Translates to: ALNAAGRQPAGLQRETLLKVCPW*SHITGP
Trigger: AGGCCCGGTGATATGGCTTCACCAGGGACAGACTTT...AAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp AGAGTGCAGCTTGAACTCATCGTAGTGTCTACAGTGTTCCCTGGGCTTTGCGCCCTTCAGTGTTGCAGATaGGGCTCTCGGGGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: RVQLELIVVSTVFPGLCALQCCR*GSRGWG
Trigger: GCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAG...GGCGCAAAGCCCAGGGAACACTGTAGACACTACGATGAGTTCAAGCTGCACTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp TCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCCTCTGGAAAAGCTGGTaGGAGAGGCCTGGTTGGTCC +
Preference number: 2 (lower is better)
Translates to: SGTALVSHKRQRQSLPCGLWKSW*ERPGWS
Trigger: GGACCAACCAGGCCTCTCTCACCAGCTTTTCCAGAG...GCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCTACTGTGGTTCTaGTGGAAGACCACCCTCACC +
Preference number: 2 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSELLWF*WKTTLT
Trigger: GGTGAGGGTGGTCTTCCAGCAGAACCACAGTAGCTC...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp AGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTCAGCCTGCCCCTCACTaGTCCTTAAGCCCAGGAGGT +
Preference number: 2 (lower is better)
Translates to: RSTEGNPAFHSEQPQGGSQPAPH*SLSPGG
Trigger: ACCTCCTGGGCTTAAGGAGCAGTGAGGGGCAGGCTG...ACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp GTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGAGTGGCAAAGGCACAGTaGGGTAGCGGAGATAGAGCA +
Preference number: 2 (lower is better)
Translates to: VLDRPLLGPSRVPVSSARVAKAQ*GSGDRA
Trigger: TGCTCTATCTCCGCTACCCCACTGTGCCTTTGCCAC...TCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp CTTTCCCACATCTGGAACAGATGTGCCCAGCCTGCCACACAGGATACAACAGTCGAGGTGGGGCCTTGGTaGCCGCAGCTGAAGGAGAGT +
Preference number: 2 (lower is better)
Translates to: LSHIWNRCAQPATQDTTVEVGPW*PQLKES
Trigger: ACTCTCCTTCAGCTGCGGCCACCAAGGCCCCACCTC...GACTGTTGTATCCTGTGTGGCAGGCTGGGCACATCTGTTCCAGATGTGGGAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp AAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTGCCATTCCACTGGGAGGTCACAGTaGTGGTTGGGTCAGGAAAGG +
Preference number: 2 (lower is better)
Translates to: KQGILWPLHEGLGTSCHSTGRSQ*WLGQER
Trigger: CCTTTCCTGACCCAACCACCACTGTGACCTCCCAGT...GGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp AAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTGCCATTCCCAGCAGGACTGGGCCTaGGTCTTCAGTGTTGCAGAT +
Preference number: 2 (lower is better)
Translates to: KQGILWPLHEGLGTSCHSQQDWA*VFSVAD
Trigger: ATCTGCAACACTGAAGACCCAGGCCCAGTCCTGCTG...GGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp GCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTTCTCCCTTCCAACATaGCTCCATTGGCCCAGCAGC +
Preference number: 2 (lower is better)
Translates to: ALNAAGRQPAGLQRETLLFSLPT*LHWPSS
Trigger: GCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAA...AAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp ATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAGCCAGCTGAAGGAGAGTTaGGAGCAGAAGATCGGGTGG +
Preference number: 2 (lower is better)
Translates to: MPQQSHFSLPTWLHWPSSQLKES*EQKIGW
Trigger: CCACCCGATCTTCTGCTCTCAACTCTCCTTCAGCTG...GCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGAAGGCAGAGGCTGCCTaGGGGTTTCAGGCCCATCTC +
Preference number: 2 (lower is better)
Translates to: QRQEEEVPACDFRTECSLKAEAA*GFQAHL
Trigger: GAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTT...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGGGTGTAAGCAGGAGCTaGTGCCAGGAGGGCAGGTCC +
Preference number: 2 (lower is better)
Translates to: FHTSAKGRAFHVALVLKRGVSRS*CQEGRS
Trigger: GGACCTGCCCTCCTGGCAGCAGCTCCTGCTTACACC...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp AGGAGAGACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATTCCAGGGCAGGGTCCTaGAGGTGTCGGCAGGCCCAG +
Preference number: 2 (lower is better)
Translates to: RRDPPGGGEEFLDYSETNSRAGS*RCRQAQ
Trigger: CTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGA...ATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTCTCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp TGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAGTGTTCCCTGGGCTTTaGGCCCACTGCAGAGCCCAC +
Preference number: 2 (lower is better)
Translates to: WFHTSAKGRAFHVALVLKVFPGL*AHCRAH
Trigger: GTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACAC...TTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp TCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCGAGCAGAAGATCGGGTaGCAAAGGCACAGTGGGGTA +
Preference number: 2 (lower is better)
Translates to: SGTALVSHKRQRQSLPCGEQKIG*QRHSGV
Trigger: TACCCCACTGTGCCTTTGCCACCCGATCTTCTGCTC...GCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGGTCACAGTGGTGGTTaGGTCAGGAAAGGTGACAAC +
Preference number: 2 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSGHSGG*VRKGDN
Trigger: GTTGTCACCTTTCCTGACCCAACCACCACTGTGACC...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp CCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGCACACCTCAGTGAGCTaGATTCCGGAACCAGGCCCA +
Preference number: 2 (lower is better)
Translates to: PWFHTSAKGRAFHVALVLHTSVS*IPEPGP
Trigger: TGGGCCTGGTTCCGGAATCCAGCTCACTGAGGTGTG...CAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp CCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGGGACAGGCCACTTCTTaGGCCATCCAGAGTTCCGGT +
Preference number: 2 (lower is better)
Translates to: PWFHTSAKGRAFHVALVLGQATS*AIQSSG
Trigger: ACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCC...CAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CAA 90 bp TTGCCATTCCCACCAGAACGGCTCCTTCACAGTTCAGGCACAGCCTaGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACT +
Preference number: 2 (lower is better)
Translates to: LPFPPERLLHSSGTA*VSHKRQRQSLPCGT
Trigger: AGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTGGTGGGAATGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp GGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGTTGGGTCAGGAAAGGTaGCAACTGGTAGCTCTTGGC +
Preference number: 2 (lower is better)
Translates to: GLQRETLLSTLSSHKVAVLGQER*QLVALG
Trigger: GCCAAGAGCTACCAGTTGTCACCTTTCCTGACCCAA...CACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp GCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACGAGAGAGTTAACCAATaGGTCTGCACAAGGCGGAGG +
Preference number: 2 (lower is better)
Translates to: AVLMGTGEYSGVPHTRNYERVNQ*VCTRRR
Trigger: CCTCCGCCTTGTGCAGACTCATTGGTTAACTCTCTC...GTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp TGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAACCTACAGCCCACTGCTaGTCCTGGCCCATCTGCTCA +
Preference number: 2 (lower is better)
Translates to: WFHTSAKGRAFHVALVLKPTAHC*SWPICS
Trigger: TGAGCAGATGGGCCAGGAGCAGCAGTGGGCTGTAGG...TTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGCTGGGGCAGGAGCCTaGGCCCCACGGCTACTTCTG +
Preference number: 2 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRAGAGA*APRLLL
Trigger: CAGAAGTAGCCGTGGGGCGCAGGCTCCTGCCCCAGC...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp GAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTTACAGGGAGGTGGGGCCTTaGTGGCCGCAGCTGAAGGAG +
Preference number: 2 (lower is better)
Translates to: EGFRPISGPVLFKDWQLYREVGP*WPQLKE
Trigger: CTCCTTCAGCTGCGGCCACCAAGGCCCCACCTCCCT...GTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp AGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTTTCTCCCTTCCAACATaGCTCCATTGGCCCAGCAGC +
Preference number: 2 (lower is better)
Translates to: RSTEGNPAFHSEQPQGGSFSLPT*LHWPSS
Trigger: GCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAA...ACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAACAGCTGAAGGAGAGTTaGGAGCAGAAGATCGGGTGG +
Preference number: 2 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKQLKES*EQKIGW
Trigger: CCACCCGATCTTCTGCTCTCAACTCTCCTTCAGCTG...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp CCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGTTGGGTCAGGAAAGGTaGCAACTGGTAGCTCTTGGC +
Preference number: 2 (lower is better)
Translates to: PWFHTSAKGRAFHVALVLLGQER*QLVALG
Trigger: GCCAAGAGCTACCAGTTGTCACCTTTCCTGACCCAA...CAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp GTGGATGAGGATCGCAGTGTGGAGACAGTGATAGACTGTCAAGCACCATGGCCGCTGAAGCAGAAGGCATaGAGGAACACTGCTTCCTGG +
Preference number: 2 (lower is better)
Translates to: VDEDRSVETVIDCQAPWPLKQKA*RNTASW
Trigger: CCAGGAAGCAGTGTTCCTTCATGCCTTCTGCTTCAG...CGGCCATGGTGCTTGACAGTCTATCACTGTCTCCACACTGCGATCCTCATCCAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR-3UTR CCA 90 bp ACTTCTGCAAAGCAGGGTGGCTCCTCAGTGGCTCAGCTTGGCAGAAGCAAACAGGGTCACAGTGGTGGTTaGGTCAGGAAAGGTGACAAC +
Preference number: 2 (lower is better)
Translates to: TSAKQGGSSVAQLGRSKQGHSGG*VRKGDN
Trigger: GTTGTCACCTTTCCTGACCCAACCACCACTGTGACC...CTGTTTGCTTCTGCCAAGCTGAGCCACTGAGGAGCCACCCTGCTTTGCAGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGCACACCTCAGTGAGCTaGATTCCGGAACCAGGCCCA +
Preference number: 2 (lower is better)
Translates to: FHTSAKGRAFHVALVLKRHTSVS*IPEPGP
Trigger: TGGGCCTGGTTCCGGAATCCAGCTCACTGAGGTGTG...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp AGCAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTCAGCAGGACTGGGCCTaGGTCTTCAGTGTTGCAGAT +
Preference number: 2 (lower is better)
Translates to: SSVKRRKCLPVTLEQSAAQQDWA*VFSVAD
Trigger: ATCTGCAACACTGAAGACCCAGGCCCAGTCCTGCTG...AGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAACAGCAGGACTGGGCCTaGGTCTTCAGTGTTGCAGAT +
Preference number: 2 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKQQDWA*VFSVAD
Trigger: ATCTGCAACACTGAAGACCCAGGCCCAGTCCTGCTG...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGGGACAGGCCACTTCTTaGGCCATCCAGAGTTCCGGT +
Preference number: 2 (lower is better)
Translates to: FHTSAKGRAFHVALVLKRGQATS*AIQSSG
Trigger: ACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCC...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGCTTGGTGGCCGCAGCTaGAGGAGAGTTGAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPLGGRS*RRVESR
Trigger: TCTGCTCTCAACTCTCCTTCAGCTGCGGCCACCAAG...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp TGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAAAGTCTGTCCCTGGTaGAGCCATATCACCGGGCCT +
Preference number: 2 (lower is better)
Translates to: WFHTSAKGRAFHVALVLKKVCPW*SHITGP
Trigger: AGGCCCGGTGATATGGCTTCACCAGGGACAGACTTT...TTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp AGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGTGGCATTGCTATCAATaGCCCAACAAAGCCACTTCT +
Preference number: 2 (lower is better)
Translates to: SRQTARRSTEGNPAFHSEWHCYQ*PNKATS
Trigger: AGAAGTGGCTTTGTTGGGGCATTGATAGCAATGCCA...CTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp CCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGCTCCCAGGCAGGTGCTaGGGATTGCTGGACGATGGC +
Preference number: 2 (lower is better)
Translates to: PEEERNFLTIQKPILKGTLPGRC*GLLDDG
Trigger: GCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAG...CGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp AGCAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTACAAGGCGGAGGACATaGAAAGGGACACAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: SSVKRRKCLPVTLEQSAATRRRT*KGTQSR
Trigger: TCTGCTCTGTGTCCCTTTCCATGTCCTCCGCCTTGT...AGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR TCA 90 bp GATGAGGATCGCAGTGTGGAGACAGTGATAGACTGTCAAGCACCATGGCCGACAGTCACACTTTATCGCTaGGGGAAGTCAAGGCAGGAA +
Preference number: 2 (lower is better)
Translates to: DEDRSVETVIDCQAPWPTVTLYR*GKSRQE
Trigger: TTCCTGCCTTGACTTCCCTCAGCGATAAAGTGTGAC...TGTCGGCCATGGTGCTTGACAGTCTATCACTGTCTCCACACTGCGATCCTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR-3UTR CCA 90 bp TCACTGCTCCTTAAGCCCAGGAGGTGGCTCTCCACCCAAGTCACTTTAAAAAGCCTACTGTGGTTCTGCTaGAAGACCACCCTCACCTCA +
Preference number: 2 (lower is better)
Translates to: SLLLKPRRWLSTQVTLKSLLWFC*KTTLTS
Trigger: TGAGGTGAGGGTGGTCTTCCAGCAGAACCACAGTAG...GCTTTTTAAAGTGACTTGGGTGGAGAGCCACCTCCTGGGCTTAAGGAGCAGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp ATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTTACCGAGAGGCCGGAGCCCTACTGTGGTTCTGCTaGAAGACCACCCTCACCTCA +
Preference number: 2 (lower is better)
Translates to: ISGPVLFKDWQLYREAGALLWFC*KTTLTS
Trigger: TGAGGTGAGGGTGGTCTTCCAGCAGAACCACAGTAG...GGCTCCGGCCTCTCGGTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAAGTCTTGTTTAAAGATTaGCAGCTTTACCGAGAGGCC +
Preference number: 2 (lower is better)
Translates to: AFHSEQPQGGSAQDCSSQVLFKD*QLYREA
Trigger: GGCCTCTCGGTAAAGCTGCCAATCTTTAAACAAGAC...TTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp TGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAACACTGTGCAGTGAGGTaGTCTATGCTGATGCACAGG +
Preference number: 2 (lower is better)
Translates to: WFHTSAKGRAFHVALVLKHCAVR*SMLMHR
Trigger: CCTGTGCATCAGCATAGACCACCTCACTGCACAGTG...TTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGTCAAGAGGAGGAAGTaGCTGCCTGTGACTTTAGAA +
Preference number: 2 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKVKRRK*LPVTLE
Trigger: TTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGAC...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp TTTTCTTACAATCCAGTCCCACTGTCCACCATGAGCAGTAACTCCCATGACCTGGTGGCAAAGGCACAGTaGGGTAGCGGAGATAGAGCA +
Preference number: 2 (lower is better)
Translates to: FSYNPVPLSTMSSNSHDLVAKAQ*GSGDRA
Trigger: TGCTCTATCTCCGCTACCCCACTGTGCCTTTGCCAC...CAGGTCATGGGAGTTACTGCTCATGGTGGACAGTGGGACTGGATTGTAAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTTACGAGCAGAAGATCGGGTaGCAAAGGCACAGTGGGGTA +
Preference number: 2 (lower is better)
Translates to: EGFRPISGPVLFKDWQLYEQKIG*QRHSGV
Trigger: TACCCCACTGTGCCTTTGCCACCCGATCTTCTGCTC...GTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp GCAGCTTTACCGAGAGGCCGGAGCCAAGTGTTAAAAATGTATAAAAAGGATTATAGGGAGGTGGGGCCTTaGTGGCCGCAGCTGAAGGAG +
Preference number: 2 (lower is better)
Translates to: AALPRGRSQVLKMYKKDYREVGP*WPQLKE
Trigger: CTCCTTCAGCTGCGGCCACCAAGGCCCCACCTCCCT...ATAATCCTTTTTATACATTTTTAACACTTGGCTCCGGCCTCTCGGTAAAGCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp AGGAGAGACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATTTCTGCAAAGCAGGGTaGCTCCTCAGTGGCTCAGCT +
Preference number: 2 (lower is better)
Translates to: RRDPPGGGEEFLDYSETNFCKAG*LLSGSA
Trigger: AGCTGAGCCACTGAGGAGCCACCCTGCTTTGCAGAA...ATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTCTCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp CCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGGAGCTACTGTGGTTCTaGTGGAAGACCACCCTCACC +
Preference number: 2 (lower is better)
Translates to: PEEERNFLTIQKPILKGTELLWF*WKTTLT
Trigger: GGTGAGGGTGGTCTTCCAGCAGAACCACAGTAGCTC...CGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR GCA 90 bp TTTTCTTACAATCCAGTCCCACTGTCCACCATGAGCAGTAACTCCCATGACCTGCGAGAAGGAAGAAGGTaGACTTGTGTGCAGGGCACA +
Preference number: 2 (lower is better)
Translates to: FSYNPVPLSTMSSNSHDLREGRR*TCVQGT
Trigger: TGTGCCCTGCACACAAGTGCACCTTCTTCCTTCTCG...CAGGTCATGGGAGTTACTGCTCATGGTGGACAGTGGGACTGGATTGTAAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CCA 90 bp CTGTGCAGTGAGGTGGTCTATGCTGATGCACAGGTTGGTTATGTTTGGTACCACCAAAAACACATGTCCTaGACAGGCCACTTCTTGGGC +
Preference number: 2 (lower is better)
Translates to: LCSEVVYADAQVGYVWYHQKHMS*TGHFLG
Trigger: GCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTG...GTGGTACCAAACATAACCAACCTGTGCATCAGCATAGACCACCTCACTGCACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGGTCTTGTTTAAAGATTaGCAGCTTTACCGAGAGGCC +
Preference number: 2 (lower is better)
Translates to: QRQEEEVPACDFRTECSLVLFKD*QLYREA
Trigger: GGCCTCTCGGTAAAGCTGCCAATCTTTAAACAAGAC...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGTCTTGTTTAAAGATTaGCAGCTTTACCGAGAGGCC +
Preference number: 2 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKVLFKD*QLYREA
Trigger: GGCCTCTCGGTAAAGCTGCCAATCTTTAAACAAGAC...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR TCA 90 bp GGTGACTTCAGTCAGCCTGACTCCAGCACCAGTCTAATGCTGTATGCTGCAATGGTAGGCTTAGAGTTTTaGAAACCAGAGTCTCCAAGG +
Preference number: 2 (lower is better)
Translates to: GDFSQPDSSTSLMLYAAMVGLEF*KPESPR
Trigger: CCTTGGAGACTCTGGTTTTCAAAACTCTAAGCCTAC...CATTGCAGCATACAGCATTAGACTGGTGCTGGAGTCAGGCTGACTGAAGTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR-3UTR TCA 90 bp GGTGACTTCAGTCAGCCTGACTCCAGCACCAGTCTAATGCTGTATGCTGCAATGATGCTGGTTCTTGGCTaGGATTATGACTCAAGATGT +
Preference number: 2 (lower is better)
Translates to: GDFSQPDSSTSLMLYAAMMLVLG*DYDSRC
Trigger: ACATCTTGAGTCATAATCTCAGCCAAGAACCAGCAT...CATTGCAGCATACAGCATTAGACTGGTGCTGGAGTCAGGCTGACTGAAGTCACC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR-3UTR CCA 90 bp GTCTTGATGATTGCAGCCATGTGTTCTGAGTGCTCAAACCCAAGGTTTCTCAGACAAAAACACATGTCCTaGACAGGCCACTTCTTGGGC +
Preference number: 2 (lower is better)
Translates to: VLMIAAMCSECSNPRFLRQKHMS*TGHFLG
Trigger: GCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTG...TCTGAGAAACCTTGGGTTTGAGCACTCAGAACACATGGCTGCAATCATCAAGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR GCA 90 bp AATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGCAGAGCAGACAAGCCCGAGAAGGAAGAAGGTaGACTTGTGTGCAGGGCACA +
Preference number: 2 (lower is better)
Translates to: NFLTIQKPILKGTQSRQAREGRR*TCVQGT
Trigger: TGTGCCCTGCACACAAGTGCACCTTCTTCCTTCTCG...GGCTTGTCTGCTCTGCGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 72 bp ATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTaGAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACA +
Preference number: 3 (lower is better)
Translates to: MPGVFAASRAGS*RCRQAQAEQAT
Trigger: TGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCAT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR TCA 72 bp ACAGCAGGACTGGGCCTGGGTCTTCAGTGTTGCAGATaGGGCTCTCGGGGCTGGGGCAGGAGCCTGCGCCCC +
Preference number: 3 (lower is better)
Translates to: TAGLGLGLQCCR*GSRGWGRSLRP
Trigger: GGGGCGCAGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTCCTGCTGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR CCA 72 bp CCCCAGTGGGCAACCTCAGAGTCCAAAGTCCCCTGCTaGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAA +
Preference number: 3 (lower is better)
Translates to: PQWATSESKVPC*DTGPAGRQASQ
Trigger: TTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGGACTCTGAGGTTGCCCACTGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR TCA 72 bp GTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTaGAGCCTGCTCACGTACCTGTGGGCCAGGGCTTCT +
Preference number: 3 (lower is better)
Translates to: VPRTRMGAARRP*SLLTYLWARAS
Trigger: AGAAGCCCTGGCCCACAGGTACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp TTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTaGCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGC +
Preference number: 3 (lower is better)
Translates to: FRSPLLDAWRLR*LQGRVLQVSAG
Trigger: GCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR CCA 72 bp GGCACAAGGAAAGGCAGGCAGCCGAAGGGCCCACCCTaGCATATGGCTCGGGTGCTGACTGGCTCGGGCAGA +
Preference number: 3 (lower is better)
Translates to: GTRKGRQPKGPP*HMARVLTGSGR
Trigger: TCTGCCCGAGCCAGTCAGCACCCGAGCCATATGCCAGGGTGGGCCCTTCGGCTGCCTGCCTTTCCTTGTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp CTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATaGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGT +
Preference number: 3 (lower is better)
Translates to: LFRPGLLSPGPG*VLPGDPEACSR
Trigger: ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR TCA 72 bp GCTCACCTCTGGCAGAGGGAAGGGGCTCGGCACAACTaGGCCAGGCACCAAGGGTCTCTCTGTGAGCCGAGG +
Preference number: 3 (lower is better)
Translates to: AHLWQREGARHN*ARHQGSLCEPR
Trigger: CCTCGGCTCACAGAGAGACCCTTGGTGCCTGGCTCAGTTGTGCCGAGCCCCTTCCCTCTGCCAGAGGTGAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp CTCCATGGCGCTAGCTCCCAGGCAGGTGCTGGGGATTaGTGGACGATGGCTGTCTCAGGACCCCACCACCAG +
Preference number: 3 (lower is better)
Translates to: LHGASSQAGAGD*WTMAVSGPHHQ
Trigger: CTGGTGGTGGGGTCCTGAGACAGCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAGCTAGCGCCATGGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp GGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTaGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAG +
Preference number: 3 (lower is better)
Translates to: GHPEFRSPLLDA*RLRCLQGRVLQ
Trigger: CTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR CCA 72 bp TGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTaGCCTCCTGTCCCCAGGACCAGGATGGGTGCTGCC +
Preference number: 3 (lower is better)
Translates to: CPGLQLTTAVQA*PPVPRTRMGAA
Trigger: GGCAGCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CAA 90 bp CCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGAGGAAGAAGGTGCACTaGTGTGCAGGGCACACCTCA +
Preference number: 3 (lower is better)
Translates to: PKSPAGTQGLQGGRPAKRRKKVH*CAGHTS
Trigger: TGAGGTGTGCCCTGCACACAAGTGCACCTTCTTCCT...CCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp GCTGGAAGACCACCCTCACCTCACAGTGCCTGGCTTTaGGGGCCTCAACCCCACTCTGGTGCCTATGAGGCC +
Preference number: 3 (lower is better)
Translates to: AGRPPSPHSAWL*GPQPHSGAYEA
Trigger: GGCCTCATAGGCACCAGAGTGGGGTTGAGGCCCCCAAAGCCAGGCACTGTGAGGTGAGGGTGGTCTTCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp GCGGCAGGCCAGCCAAGAGGCAAGCAAGGGATCCTGTaGCCACTGCATGAGGGACTGGGCACGTCTTGCCAT +
Preference number: 3 (lower is better)
Translates to: AAGQPRGKQGIL*PLHEGLGTSCH
Trigger: ATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCCTGCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CAA 90 bp CTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCAGGGAGGTGGGGCCTaGGTGGCCGCAGCTGAAGGA +
Preference number: 3 (lower is better)
Translates to: LDRPLLGPSRVPVSSARCQGGGA*VAAAEG
Trigger: TCCTTCAGCTGCGGCCACCAAGGCCCCACCTCCCTG...GCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CAA 90 bp CAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAGGGAGGTGGGGCCTaGGTGGCCGCAGCTGAAGGA +
Preference number: 3 (lower is better)
Translates to: QTARRSTEGNPAFHSEQPQGGGA*VAAAEG
Trigger: TCCTTCAGCTGCGGCCACCAAGGCCCCACCTCCCTG...TGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CAA 90 bp GCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCGGAGGATTCACAGTGTaGGGTGGTGTAAGCAGGAGC +
Preference number: 3 (lower is better)
Translates to: ARCLASSLPPGQGPAGVGGGFTV*GGVSRS
Trigger: GCTCCTGCTTACACCACCCAACACTGTGAATCCTCC...GCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CAA 90 bp AAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGCAAAGGAAGAAGGTGCACTaGTGTGCAGGGCACACCTCA +
Preference number: 3 (lower is better)
Translates to: KSPAGTQGLQGGRPAKRQRKKVH*CAGHTS
Trigger: TGAGGTGTGCCCTGCACACAAGTGCACCTTCTTCCT...TTGCCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CAA 90 bp AGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGTCCAACATGGCTCCATaGGCCCAGCAGCAGCATGGG +
Preference number: 3 (lower is better)
Translates to: SSQPLFRPGLLSPGPGWVSNMAP*AQQQHG
Trigger: CCCATGCTGCTGCTGGGCCAATGGAGCCATGTTGGA...CACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CAA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTGCAGCTGAAGGAGAGTaGAGAGCAGAAGATCGGGTG +
Preference number: 3 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRAAEGE*RAEDRV
Trigger: CACCCGATCTTCTGCTCTCAACTCTCCTTCAGCTGC...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR TCA 72 bp GATGGCTGTCTCAGGACCCCACCACCAGAGGAAGTATaGGAACGCTCCCCGACACCACTGAGGCTGCTCGGC +
Preference number: 3 (lower is better)
Translates to: DGCLRTPPPEEV*ERSPTPLRLLG
Trigger: GCCGAGCAGCCTCAGTGGTGTCGGGGAGCGTTCTCATACTTCCTCTGGTGGTGGGGTCCTGAGACAGCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 72 bp CACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGATTaGAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTG +
Preference number: 3 (lower is better)
Translates to: HSEQPQGGSAQD*SSQPLFRPGLL
Trigger: CAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp GCTCCTTCCCAGAGAGGAGCTGTACCCAGCAGCTGCTaGACTGAATGCAGCAGGCAGACAGCCCGCAGGTCT +
Preference number: 3 (lower is better)
Translates to: APSQRGAVPSSC*TECSRQTARRS
Trigger: AGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGCAGCAGCTGCTGGGTACAGCTCCTCTCTGGGAAGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp GCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTaGATGAGGGACTGGGCACGTCTTGCCATTCCCACC +
Preference number: 3 (lower is better)
Translates to: ASQEASKGSCGH*MRDWARLAIPT
Trigger: GGTGGGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 72 bp GAAGGGCCCACCCTGGCATATGGCTCGGGTGCTGACTaGCTCGGGCAGACACTGCACTATACTGTCTGCACC +
Preference number: 3 (lower is better)
Translates to: EGPTLAYGSGAD*LGQTLHYTVCT
Trigger: GGTGCAGACAGTATAGTGCAGTGTCTGCCCGAGCCAGTCAGCACCCGAGCCATATGCCAGGGTGGGCCCTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp AGCAGGCGACAGGAGGTCCTACAGCAGGACTGGGCCTaGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCT +
Preference number: 3 (lower is better)
Translates to: SRRQEVLQQDWA*VFSVADEALGA
Trigger: AGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTCCTGCTGTAGGACCTCCTGTCGCCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR CCA 72 bp CCCTTCCAACATGGCTCCATTGGCCCAGCAGCAGCATaGGGACAGCTGCCTGCGGCAGTGCTAATGGGGACA +
Preference number: 3 (lower is better)
Translates to: PFQHGSIGPAAA*GQLPAAVLMGT
Trigger: TGTCCCCATTAGCACTGCCGCAGGCAGCTGTCCCCATGCTGCTGCTGGGCCAATGGAGCCATGTTGGAAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CAA 90 bp AGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGGCAGCTGAAGGAGAGTaGAGAGCAGAAGATCGGGTG +
Preference number: 3 (lower is better)
Translates to: SSQPLFRPGLLSPGPGWVAAEGE*RAEDRV
Trigger: CACCCGATCTTCTGCTCTCAACTCTCCTTCAGCTGC...CACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 72 bp GCTGACTGGCTCGGGCAGACACTGCACTATACTGTCTaGACCACGGCCACGGGGATCACTTCTGTCTCCTGC +
Preference number: 3 (lower is better)
Translates to: ADWLGQTLHYTV*TTATGITSVSC
Trigger: GCAGGAGACAGAAGTGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCAGTGTCTGCCCGAGCCAGTCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 72 bp CATATGGCTCGGGTGCTGACTGGCTCGGGCAGACACTaGACTATACTGTCTGCACCACGGCCACGGGGATCA +
Preference number: 3 (lower is better)
Translates to: HMARVLTGSGRH*TILSAPRPRGS
Trigger: TGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCAGTGTCTGCCCGAGCCAGTCAGCACCCGAGCCATATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 72 bp GGACATGGAAAGGGACACAGAGCAGACAAAGGTCCCTaGCTCCCTGGTGCCCTCCACAGCCTACAGCCCACT +
Preference number: 3 (lower is better)
Translates to: GHGKGHRADKGP*LPGALHSLQPT
Trigger: AGTGGGCTGTAGGCTGTGGAGGGCACCAGGGAGGCAGGGACCTTTGTCTGCTCTGTGTCCCTTTCCATGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp TGTCCTCAGCCCAAGGGGAGGATTCACAGTGTTGGGTaGTGTAAGCAGGAGCTGCTGCCAGGAGGGCAGGTC +
Preference number: 3 (lower is better)
Translates to: CPQPKGRIHSVG*CKQELLPGGQV
Trigger: GACCTGCCCTCCTGGCAGCAGCTCCTGCTTACACCACCCAACACTGTGAATCCTCCCCTTGGGCTGAGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp GGTTCTGCTGGAAGACCACCCTCACCTCACAGTGCCTaGCTTTGGGGGCCTCAACCCCACTCTGGTGCCTAT +
Preference number: 3 (lower is better)
Translates to: GSAGRPPSPHSA*LWGPQPHSGAY
Trigger: ATAGGCACCAGAGTGGGGTTGAGGCCCCCAAAGCCAGGCACTGTGAGGTGAGGGTGGTCTTCCAGCAGAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp GAGCCTGCGCCCCACGGCTACTTCTGCAAAGCAGGGTaGCTCCTCAGTGGCTCAGCTTGGCAGAAGCAAACA +
Preference number: 3 (lower is better)
Translates to: EPAPHGYFCKAG*LLSGSAWQKQT
Trigger: TGTTTGCTTCTGCCAAGCTGAGCCACTGAGGAGCCACCCTGCTTTGCAGAAGTAGCCGTGGGGCGCAGGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp GCAAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTaGGCACGTCTTGCCATTCCCACCAGAACGGCTCCT +
Preference number: 3 (lower is better)
Translates to: ASKGSCGHCMRD*ARLAIPTRTAP
Trigger: AGGAGCCGTTCTGGTGGGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR TCA 72 bp TGTCCTCATGGCTCTAGCCAGGCCAAGAGCCCATTGTaGAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATC +
Preference number: 3 (lower is better)
Translates to: CPHGSSQAKSPL*RQRLPEGFRPI
Trigger: GATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCTTGGCCTGGCTAGAGCCATGAGGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR GCA 72 bp CTAGCCAGGCCAAGAGCCCATTGTGAAGGCAGAGGCTaGCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCT +
Preference number: 3 (lower is better)
Translates to: LARPRAHCEGRG*LRVSGPSQVLS
Trigger: AGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCTTGGCCTGGCTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR CCA 72 bp AAGGTGCACTTGTGTGCAGGGCACACCTCAGTGAGCTaGATTCCGGAACCAGGCCCACAGCACAGAAAGGGG +
Preference number: 3 (lower is better)
Translates to: KVHLCAGHTSVS*IPEPGPQHRKG
Trigger: CCCCTTTCTGTGCTGTGGGCCTGGTTCCGGAATCCAGCTCACTGAGGTGTGCCCTGCACACAAGTGCACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CAA 90 bp GCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACCCTGGGTCTTCAGTGTaGCAGATGAGGCTCTCGGGG +
Preference number: 3 (lower is better)
Translates to: AVLMGTGEYSGVPHTRNYPGSSV*QMRLSG
Trigger: CCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGG...GTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CAA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTCAGGGCTTCTCTTTTTaGCTCCCTACTCTGGAAAAG +
Preference number: 3 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRQGFSF*LPTLEK
Trigger: CTTTTCCAGAGTAGGGAGCAAAAAAGAGAAGCCCTG...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR TCA 72 bp GGAAGAAGGTGCACTTGTGTGCAGGGCACACCTCAGTaGGCTGGATTCCGGAACCAGGCCCACAGCACAGAA +
Preference number: 3 (lower is better)
Translates to: GRRCTCVQGTPQ*AGFRNQAHSTE
Trigger: TTCTGTGCTGTGGGCCTGGTTCCGGAATCCAGCTCACTGAGGTGTGCCCTGCACACAAGTGCACCTTCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR TCA 72 bp GCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTaGAAAGGAGAGACCCACCCGGAGGAGGAGAGGAAT +
Preference number: 3 (lower is better)
Translates to: APKAEPSMWHLS*KGETHPEEERN
Trigger: ATTCCTCTCCTCCTCCGGGTGGGTCTCTCCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp CGAGGAGAGCAACCTCAAAGGGAGCTACTGTGGTTCTaGTGGAAGACCACCCTCACCTCACAGTGCCTGGCT +
Preference number: 3 (lower is better)
Translates to: RGEQPQRELLWF*WKTTLTSQCLA
Trigger: AGCCAGGCACTGTGAGGTGAGGGTGGTCTTCCAGCAGAACCACAGTAGCTCCCTTTGAGGTTGCTCTCCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR GCA 72 bp ATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTaGCATTCCCACCAGAACGGCTCCTTCACAGTTCAG +
Preference number: 3 (lower is better)
Translates to: ILWPLHEGLGTS*HSHQNGSFTVQ
Trigger: CTGAACTGTGAAGGAGCCGTTCTGGTGGGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp GAGAAACCGAGCTGGAAGCCCAGGGGGTGCACACTGTaGAGTGAGGTGGTCTATGCTGATGCACAGGTTGGT +
Preference number: 3 (lower is better)
Translates to: EKPSWKPRGCTL*SEVVYADAQVG
Trigger: ACCAACCTGTGCATCAGCATAGACCACCTCACTGCACAGTGTGCACCCCCTGGGCTTCCAGCTCGGTTTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
3UTR CCA 72 bp GTGGTTGGGTCAGGAAAGGTGACAACTGGTAGCTCTTaGCATCCAGCTGTGACCCAGGCGAGGAGAGCAACC +
Preference number: 3 (lower is better)
Translates to: VVGSGKVTTGSS*HPAVTQARRAT
Trigger: GGTTGCTCTCCTCGCCTGGGTCACAGCTGGATGCCAAGAGCTACCAGTTGTCACCTTTCCTGACCCAACCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR TCA 72 bp GCCACGGGGATCACTTCTGTCTCCTGCCATCTAGACTaGTCTTTCCACATCAGGGCACGTGAGGCTTCCTCC +
Preference number: 3 (lower is better)
Translates to: ATGITSVSCHLD*SFHIRAREASS
Trigger: GGAGGAAGCCTCACGTGCCCTGATGTGGAAAGATCAGTCTAGATGGCAGGAGACAGAAGTGATCCCCGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp GGAGAGCAACCTCAAAGGGAGCTACTGTGGTTCTGCTaGAAGACCACCCTCACCTCACAGTGCCTGGCTTTG +
Preference number: 3 (lower is better)
Translates to: GEQPQRELLWFC*KTTLTSQCLAL
Trigger: CAAAGCCAGGCACTGTGAGGTGAGGGTGGTCTTCCAGCAGAACCACAGTAGCTCCCTTTGAGGTTGCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATaGCTCCATTGGCCCAGCAGCAGCATGGGGACAGCT +
Preference number: 3 (lower is better)
Translates to: SMPQQSHFSLPT*LHWPSSSMGTA
Trigger: AGCTGTCCCCATGCTGCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CAA 90 bp TGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAACCTGGGTCTTCAGTGTaGCAGATGAGGCTCTCGGGG +
Preference number: 3 (lower is better)
Translates to: WFHTSAKGRAFHVALVLKPGSSV*QMRLSG
Trigger: CCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGG...TTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CAA 90 bp AGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGATCTCAGGTCCTGTCTaGTTTAAAGATTGGCAGCTT +
Preference number: 3 (lower is better)
Translates to: SSQPLFRPGLLSPGPGWVISGPV*FKDWQL
Trigger: AAGCTGCCAATCTTTAAACAAGACAGGACCTGAGAT...CACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 72 bp CACCAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTaGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCAT +
Preference number: 3 (lower is better)
Translates to: HQNGSFTVQAQP*FHTSAKGRAFH
Trigger: ATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 72 bp GCTGGAAGCCCAGGGGGTGCACACTGTGCAGTGAGGTaGTCTATGCTGATGCACAGGTTGGTTATGTTTGGT +
Preference number: 3 (lower is better)
Translates to: AGSPGGAHCAVR*SMLMHRLVMFG
Trigger: ACCAAACATAACCAACCTGTGCATCAGCATAGACCACCTCACTGCACAGTGTGCACCCCCTGGGCTTCCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
3UTR-3UTR CAA 90 bp AGAGTGCAGCTTGAACTCATCGTAGTGTCTACAGTGTTCCCTGGGCTTTGCGCCGCAGCTGAAGGAGAGTaGAGAGCAGAAGATCGGGTG +
Preference number: 3 (lower is better)
Translates to: RVQLELIVVSTVFPGLCAAAEGE*RAEDRV
Trigger: CACCCGATCTTCTGCTCTCAACTCTCCTTCAGCTGC...GGCGCAAAGCCCAGGGAACACTGTAGACACTACGATGAGTTCAAGCTGCACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CAA 90 bp GCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTCAGGGCTTCTCTTTTTaGCTCCCTACTCTGGAAAAG +
Preference number: 3 (lower is better)
Translates to: ALNAAGRQPAGLQRETLLQGFSF*LPTLEK
Trigger: CTTTTCCAGAGTAGGGAGCAAAAAAGAGAAGCCCTG...AAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp TCAGAGAGAGGCAGATCCAGTCCCCAGCTGGCAAGCTaGAGTCATAACTGGCATTGCTATCAATGCCCCAAC +
Preference number: 3 (lower is better)
Translates to: SERGRSSPQLAS*SHNWHCYQCPN
Trigger: GTTGGGGCATTGATAGCAATGCCAGTTATGACTGCAGCTTGCCAGCTGGGGACTGGATCTGCCTCTCTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 72 bp GGCTCCTCAGTGGCTCAGCTTGGCAGAAGCAAACAGTaGGGGAGGAGAGAGTTAACCAATGAGTCTGCACAA +
Preference number: 3 (lower is better)
Translates to: GSSVAQLGRSKQ*GRRELTNESAQ
Trigger: TTGTGCAGACTCATTGGTTAACTCTCTCCTCCCCCACTGTTTGCTTCTGCCAAGCTGAGCCACTGAGGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CAA 90 bp AGGAGAGACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCCTGGGTCTTCAGTGTaGCAGATGAGGCTCTCGGGG +
Preference number: 3 (lower is better)
Translates to: RRDPPGGGEEFLDYSETNPGSSV*QMRLSG
Trigger: CCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGG...ATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTCTCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR TCA 72 bp CAGAAGCAAACAGTGGGGGAGGAGAGAGTTAACCAATaGGTCTGCACAAGGCGGAGGACATGGAAAGGGACA +
Preference number: 3 (lower is better)
Translates to: QKQTVGEERVNQ*VCTRRRTWKGT
Trigger: TGTCCCTTTCCATGTCCTCCGCCTTGTGCAGACTCATTGGTTAACTCTCTCCTCCCCCACTGTTTGCTTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR TCA 72 bp AACATTTTTCTTACAATCCAGTCCCACTGTCCACCATaGGCAGTAACTCCCATGACCTGCGGCGCTGGTCCC +
Preference number: 3 (lower is better)
Translates to: NIFLTIQSHCPP*AVTPMTCGAGP
Trigger: GGGACCAGCGCCGCAGGTCATGGGAGTTACTGCTCATGGTGGACAGTGGGACTGGATTGTAAGAAAAATGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp AGTCCCCAGCTGGCAAGCTGCAGTCATAACTGGCATTaGTATCAATGCCCCAACAAAGCCACTTCTCCCTTC +
Preference number: 3 (lower is better)
Translates to: SPQLASCSHNWH*YQCPNKATSPF
Trigger: GAAGGGAGAAGTGGCTTTGTTGGGGCATTGATAGCAATGCCAGTTATGACTGCAGCTTGCCAGCTGGGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 72 bp GCTTTCTTATACCATCCAGGGTGGTGTCGACCACAGTaGGCTAGGCCTTCCGCCATCCATCATGAAGTCTTT +
Preference number: 3 (lower is better)
Translates to: AFLYHPGWCRPQ*ARPSAIHHEVF
Trigger: AAAGACTTCATGATGGATGGCGGAAGGCCTAGCCCACTGTGGTCGACACCACCCTGGATGGTATAAGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR-3UTR CAA 90 bp GATGAGGATCGCAGTGTGGAGACAGTGATAGACTGTCAAGCACCATGGCCGACAAGTCAAGGCAGGAACTaGGAGGCAGAAACTGAAGCA +
Preference number: 3 (lower is better)
Translates to: DEDRSVETVIDCQAPWPTSQGRN*EAETEA
Trigger: TGCTTCAGTTTCTGCCTCCAAGTTCCTGCCTTGACT...TGTCGGCCATGGTGCTTGACAGTCTATCACTGTCTCCACACTGCGATCCTCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR GCA 72 bp CTGGCAAGCTGCAGTCATAACTGGCATTGCTATCAATaGCCCAACAAAGCCACTTCTCCCTTCCAACATGGC +
Preference number: 3 (lower is better)
Translates to: LASCSHNWHCYQ*PNKATSPFQHG
Trigger: GCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGATAGCAATGCCAGTTATGACTGCAGCTTGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CCA 72 bp ATAGTATCAGAGCCAACTCATGCACAAGGGCATGGCTaGTACCAACCTTCCCCCTACAGAAAGTCTGTCCCT +
Preference number: 3 (lower is better)
Translates to: IVSEPTHAQGHG*YQPSPYRKSVP
Trigger: AGGGACAGACTTTCTGTAGGGGGAAGGTTGGTACCAGCCATGCCCTTGTGCATGAGTTGGCTCTGATACTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp GCTCATAGTATCAGAGCCAACTCATGCACAAGGGCATaGCTGGTACCAACCTTCCCCCTACAGAAAGTCTGT +
Preference number: 3 (lower is better)
Translates to: AHSIRANSCTRA*LVPTFPLQKVC
Trigger: ACAGACTTTCTGTAGGGGGAAGGTTGGTACCAGCCATGCCCTTGTGCATGAGTTGGCTCTGATACTATGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR CCA 72 bp AGATCCAGTCCCCAGCTGGCAAGCTGCAGTCATAACTaGCATTGCTATCAATGCCCCAACAAAGCCACTTCT +
Preference number: 3 (lower is better)
Translates to: RSSPQLASCSHN*HCYQCPNKATS
Trigger: AGAAGTGGCTTTGTTGGGGCATTGATAGCAATGCCAGTTATGACTGCAGCTTGCCAGCTGGGGACTGGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR-3UTR CAA 90 bp GTCTTGATGATTGCAGCCATGTGTTCTGAGTGCTCAAACCCAAGGTTTCTCAGAGGAGGATTCACAGTGTaGGGTGGTGTAAGCAGGAGC +
Preference number: 3 (lower is better)
Translates to: VLMIAAMCSECSNPRFLRGGFTV*GGVSRS
Trigger: GCTCCTGCTTACACCACCCAACACTGTGAATCCTCC...TCTGAGAAACCTTGGGTTTGAGCACTCAGAACACATGGCTGCAATCATCAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR TCA 72 bp AAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTaGACTCATCGTAGTGTCTACAGTGTTCCCTGGGCT +
Preference number: 3 (lower is better)
Translates to: KCLPVTLEQSAA*THRSVYSVPWA
Trigger: AGCCCAGGGAACACTGTAGACACTACGATGAGTTCAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp GAGGCAGAAACTGAAGCAGAAGGCATGAAGGAACACTaGTTCCTGGCTTGTTCAATACAGCTTGCTCGGTCT +
Preference number: 3 (lower is better)
Translates to: EAETEAEGMKEH*FLACSIQLARS
Trigger: AGACCGAGCAAGCTGTATTGAACAAGCCAGGAAGCAGTGTTCCTTCATGCCTTCTGCTTCAGTTTCTGCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
3UTR-3UTR CAA 90 bp GGATTATGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCAGGAGGATTCACAGTGTaGGGTGGTGTAAGCAGGAGC +
Preference number: 3 (lower is better)
Translates to: GLCFLSKTHVLDRPLLGPGGFTV*GGVSRS
Trigger: GCTCCTGCTTACACCACCCAACACTGTGAATCCTCC...TGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACATAATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
3UTR-3UTR CAA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAATCTCAGGTCCTGTCTaGTTTAAAGATTGGCAGCTT +
Preference number: 3 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKISGPV*FKDWQL
Trigger: AAGCTGCCAATCTTTAAACAAGACAGGACCTGAGAT...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR GCA 72 bp AAGGAAAGCAGGACTATCCACGTTGGCATCTGTAAATaGTGGTTCTTGGCTGAGATTATGACTCAAGATGTA +
Preference number: 3 (lower is better)
Translates to: KESRTIHVGICK*WFLAEIMTQDV
Trigger: TACATCTTGAGTCATAATCTCAGCCAAGAACCAGCATTTACAGATGCCAACGTGGATAGTCCTGCTTTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
CDS-3UTR GCA 90 bp CGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGGGCAGCAGCAGGTCTaGCGACCGCCCTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: RCLQGRVLQVSAGPGRAGGQQQV*RPPCAG
Trigger: TCCTGCACAGGGCGGTCGGCAGACCTGCTGCTGCCC...GCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGCCTGGCTCCGGCCGCTaGCGCTCTGCCTGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQEPGSGR*RSACGL
Trigger: AAGACCACAGGCAGAGCGGCAGCGGCCGGAGCCAGG...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGTGCGACTCCCCATTGTaGCGTCCTCCGTGGGGGAGC +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQECDSPL*RPPWGS
Trigger: GCTCCCCCACGGAGGACGCCACAATGGGGAGTCGCA...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGGCCGTGGAGGAGACCTaGGAACTGCTCTGGGACCTG +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQEAVEET*ELLWDL
Trigger: CAGGTCCCAGAGCAGTTCTCAGGTCTCCTCCACGGC...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGAACTGCTCTGGGACCTaGCCGTCCTGCCCCTCCACA +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQENCSGT*PSCPST
Trigger: TGTGGAGGGGCAGGACGGGCAGGTCCCAGAGCAGTT...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGAGCTCAGCTTTGGGCTTaGTGGTGGGAGGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: LPPGQGPAGVGRPRPSRRAQLWA*WWEGLC
Trigger: GCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTGAGC...TCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGGGGGCCGTGAGCAGCTaGAAAGGGTCCTGCCCCACC +
Preference number: 4 (lower is better)
Translates to: PKSPAGTQGLQGGRPAKRGAVSS*KGSCPT
Trigger: GGTGGGGCAGGACCCTTTCCAGCTGCTCACGGCCCC...CCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGG
70% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGCCTCTAGCTGCATGCTaGCCTCGTGGCAGGCGTCCT +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQEPLAAC*PRGRRP
Trigger: AGGACGCCTGCCACGAGGCCAGCATGCAGCTAGAGG...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGGTGCTGTGGGTCACTaGTGCCAATCTCCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: RCLQGRVLQVSAGPGRAGGAVGH*CQSPSG
Trigger: ACCTGAGGGAGATTGGCATCAGTGACCCACAGCACC...GCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGCCTGGCTCCTCTAGCTaGATGCTGGCCTCGTGGCAG +
Preference number: 4 (lower is better)
Translates to: PGVFAASRAGSCRCRQAQPGSSS*MLASWQ
Trigger: CTGCCACGAGGCCAGCATGCAGCTAGAGGAGCCAGG...CTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCCATCGAGGTATGTTCTaGTGGCCAGGGCTGTCAGGC +
Preference number: 4 (lower is better)
Translates to: RCLQGRVLQVSAGPGRAGHRGMF*WPGLSG
Trigger: GCCTGACAGCCCTGGCCAGCAGAACATACCTCGATG...GCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCGGGCAGCAGCAGGTCTaGCGACCGCCCTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: ARCLASSLPPGQGPAGVGGQQQV*RPPCAG
Trigger: TCCTGCACAGGGCGGTCGGCAGACCTGCTGCTGCCC...GCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGGACGGAGGGTCAGCTTaGTCTCACTGGGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQEDGGSA*SHWAPP
Trigger: AGGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTC...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCCGGTGGCCCAGCAGGTaGACTTTCAGGACATTGACA +
Preference number: 4 (lower is better)
Translates to: RCLQGRVLQVSAGPGRAGRWPSR*TFRTLT
Trigger: TGTCAATGTCCTGAAAGTTCACCTGCTGGGCCACCG...GCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCTGCGGGACCTGCCCGTCCTaGCCCTCCACAGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: AWVFSVADEALGAGAGACGTCPS*PSTESW
Trigger: CCAGGACTCTGTGGAGGGGCAGGACGGGCAGGTCCC...GCAGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCGGGACCTGCCCGTCCTaGCCCTCCACAGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: AHNRCSGLASCPQDQDGCGTCPS*PSTESW
Trigger: CCAGGACTCTGTGGAGGGGCAGGACGGGCAGGTCCC...GCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCTCAGAGTCCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAAAGGAGCGTGCAGCCTaGAGCAGCTTCCGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: PQSPKSPAGTQGLQGGRPKERAA*SSFRRC
Trigger: GCACCGGCGGAAGCTGCTGCAGGCTGCACGCTCCTT...TGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGGACTCTGAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTGGGCAGCAGCAGGTCTaGCGACCGCCCTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRGQQQV*RPPCAG
Trigger: TCCTGCACAGGGCGGTCGGCAGACCTGCTGCTGCCC...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGATCCCGATGCTGCAGTTaGACAAGGACTCGCTGCGAC +
Preference number: 4 (lower is better)
Translates to: LPPGQGPAGVGRPRPSRRSRCCS*TRTRCD
Trigger: GTCGCAGCGAGTCCTTGTCCAACTGCAGCATCGGGA...TCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGTGCAGGAATCATTCTaGCTCAGCGGGGACGATGTC +
Preference number: 4 (lower is better)
Translates to: RCLQGRVLQVSAGPGRAGVQESF*LSGDDV
Trigger: GACATCGTCCCCGCTGAGCCAGAATGATTCCTGCAC...GCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGTCAGCTTGGTCTCACTaGGCTCCTCCTGGACTCGGA +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQESAWSH*APPGLG
Trigger: TCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGA...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCCCTGCTTGTGTCTGCTaGGGGCAGCAGCAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: ARCLASSLPPGQGPAGVGPACVC*GQQQVC
Trigger: GCAGACCTGCTGCTGCCCTCAGCAGACACAAGCAGG...GCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCTCTGCAGGTCCTTGGTaGTGTACGCGAAGGTACACA +
Preference number: 4 (lower is better)
Translates to: RCLQGRVLQVSAGPGRAGSAGPW*CTRRYT
Trigger: TGTGTACCTTCGCGTACATCACCAAGGACCTGCAGA...GCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCCCTGGCTCCGGCCGCTaGCGCTCTGCCTGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: GQPRGKQGILWPLHEGLGPGSGR*RSACGL
Trigger: AAGACCACAGGCAGAGCGGCAGCGGCCGGAGCCAGG...GCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTAACTGCTCTGGGACCTaGCCGTCCTGCCCCTCCACA +
Preference number: 4 (lower is better)
Translates to: LASCPQDQDGCCPETLKPNCSGT*PSCPST
Trigger: TGTGGAGGGGCAGGACGGGCAGGTCCCAGAGCAGTT...AGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAGGAGGCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCCACTCCCCGACGCTCTaGTCCAGCGTCCGAGAACCT +
Preference number: 4 (lower is better)
Translates to: ARCLASSLPPGQGPAGVGHSPTL*SSVREP
Trigger: AGGTTCTCGGACGCTGGAGCAGAGCGTCGGGGAGTG...GCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGAGCTTGCTCTCGTACTaGTGCAGGCCAATCGACTCC +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQESLLSY*CRPIDS
Trigger: GGAGTCGATTGGCCTGCAGCAGTACGAGAGCAAGCT...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTAAGGAGCGTGCAGCCTaGAGCAGCTTCCGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRKERAA*SSFRRC
Trigger: GCACCGGCGGAAGCTGCTGCAGGCTGCACGCTCCTT...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGTGCACCACGGCCTTGTaGCCATTCCTTGCTGCCAAG +
Preference number: 4 (lower is better)
Translates to: PGVFAASRAGSCRCRQAQCTTAL*PFLAAK
Trigger: CTTGGCAGCAAGGAATGGCCACAAGGCCGTGGTGCA...CTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGTCCTCCCGTCTGTaGTCCCCAGCTTCTTGGTTT +
Preference number: 4 (lower is better)
Translates to: LPPGQGPAGVGRPRPSRRQSSRL*SPASWF
Trigger: AAACCAAGAAGCTGGGGACCACAGACGGGAGGACTG...TCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGGGCCGTGAGCAGCTaGAAAGGGTCCTGCCCCACC +
Preference number: 4 (lower is better)
Translates to: SARCLASSLPPGQGPAGVGAVSS*KGSCPT
Trigger: GGTGGGGCAGGACCCTTTCCAGCTGCTCACGGCCCC...GACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCTGCATGCTGGCCTCGTaGCAGGCGTCCTGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: AHNRCSGLASCPQDQDGCCMLAS*QASCWE
Trigger: CTCCCAGCAGGACGCCTGCCACGAGGCCAGCATGCA...GCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCTGCTGCATGCTGGCCTCGTaGCAGGCGTCCTGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: AWVFSVADEALGAGAGACCMLAS*QASCWE
Trigger: CTCCCAGCAGGACGCCTGCCACGAGGCCAGCATGCA...GCAGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGCCCAGGCCGAGCAGGCGACAGGAGGTCCTACAGCAGGACTGGGCCTGGGTCTAGGCCGCCATGGTCCTaGATTTCTGGGCTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: GPGRAGDRRSYSRTGPGSRPPWS*ISGLGG
Trigger: CCCTCCAAGCCCAGAAATCCAGGACCATGGCGGCCT...AGACCCAGGCCCAGTCCTGCTGTAGGACCTCCTGTCGCCTGCTCGGCCTGGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGTGGGGAGCACTACTCTaGATCCTGGGTCTCACAGCC +
Preference number: 4 (lower is better)
Translates to: PKSPAGTQGLQGGRPAKRWGALL*ILGLTA
Trigger: GGCTGTGAGACCCAGGATTCAGAGTAGTGCTCCCCA...CCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGCGCAGGACTCAAAGATaGGCTTTTCTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQERRTQR*AFLAGA
Trigger: AGCACCAGCCAGAAAAGCTCATCTTTGAGTCCTGCG...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCAGGGCGGCAGGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGTACTGGGCCGCGCAGTaGAGGGCCGTCTCATTGTCG +
Preference number: 4 (lower is better)
Translates to: AGRQASQEASKGSCGHCMYWAAQ*RAVSLS
Trigger: CGACAATGAGACGGCCCTGCACTGCGCGGCCCAGTA...CATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCCTGCCGCCCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGCGGCCGCTGCCGCTCTaGCTGTGGTCTTCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: GGSAQDCSSQPLFRPGLLRPLPL*LWSSVL
Trigger: GAGGACTGAAGACCACAGGCAGAGCGGCAGCGGCCG...CAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCTCGTGGCAGGCGTCCTaGTGGGAGGACTCCGGGTGG +
Preference number: 4 (lower is better)
Translates to: PQGGSAQDCSSQPLFRPGSWQAS*WEDSGW
Trigger: CCACCCGGAGTCCTCCCAGCAGGACGCCTGCCACGA...GCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCAGGGCGGCAGGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGCCTGGCTCCTCTAGCTaGATGCTGGCCTCGTGGCAG +
Preference number: 4 (lower is better)
Translates to: AGRQASQEASKGSCGHCMPGSSS*MLASWQ
Trigger: CTGCCACGAGGCCAGCATGCAGCTAGAGGAGCCAGG...CATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCCTGCCGCCCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCGCTCAGCTTTGGGCTTaGTGGTGGGAGGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: AHNRCSGLASCPQDQDGCAQLWA*WWEGLC
Trigger: GCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTGAGC...GCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CGACCCCAGCAGCCTGCCCCTCACTGCTCCTTAAGCCCAGGAGGTGGCTCTCCACACTCCCCGACGCTCTaGTCCAGCGTCCGAGAACCT +
Preference number: 4 (lower is better)
Translates to: RPQQPAPHCSLSPGGGSPHSPTL*SSVREP
Trigger: AGGTTCTCGGACGCTGGAGCAGAGCGTCGGGGAGTG...TGGAGAGCCACCTCCTGGGCTTAAGGAGCAGTGAGGGGCAGGCTGCTGGGGTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCTCAGAGTCCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAAGCAGCTTCCGCCGGTaGTGTGGGTCACTGATGCCA +
Preference number: 4 (lower is better)
Translates to: PQSPKSPAGTQGLQGGRPSSFRR*CGSLMP
Trigger: TGGCATCAGTGACCCACAGCACCGGCGGAAGCTGCT...TGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGGACTCTGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCTGCCTTGGGCAAGGAGCGTaGAGCCTGCAGCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: AWVFSVADEALGAGAGACLGQGA*SLQQLP
Trigger: CGGAAGCTGCTGCAGGCTGCACGCTCCTTGCCCAAG...GCAGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGGCCCATCTGCTCAGAAAGGCACAAGGAAAGGCAGGCAGCCGAAGGGCCCACGGGCAGCAGCAGGTCTaGCGACCGCCCTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LAHLLRKAQGKAGSRRAHGQQQV*RPPCAG
Trigger: TCCTGCACAGGGCGGTCGGCAGACCTGCTGCTGCCC...GTGGGCCCTTCGGCTGCCTGCCTTTCCTTGTGCCTTTCTGAGCAGATGGGCCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR CCA 90 bp GCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGTGTGAGGGCCCTTGCTaGATGAGCAGACGTACTATC +
Preference number: 4 (lower is better)
Translates to: ASSLPPGQGPAGVGRPRPCEGPC*MSRRTI
Trigger: GATAGTACGTCTGCTCATCCAGCAAGGGCCCTCACA...CGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGGTGGCGGTTTTGCTaGAGGCGGCGGACGTTCCCT +
Preference number: 4 (lower is better)
Translates to: SARCLASSLPPGQGPAGVGWRFC*RRRTFP
Trigger: AGGGAACGTCCGCCGCCTCCAGCAAAACCGCCACCC...GACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTGGGGCCGTGAGCAGCTaGAAAGGGTCCTGCCCCACC +
Preference number: 4 (lower is better)
Translates to: GPSRVPVSSARCLASSLPGAVSS*KGSCPT
Trigger: GGTGGGGCAGGACCCTTTCCAGCTGCTCACGGCCCC...AGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCCCTCTAGCTGCATGCTaGCCTCGTGGCAGGCGTCCT +
Preference number: 4 (lower is better)
Translates to: AHNRCSGLASCPQDQDGCPLAAC*PRGRRP
Trigger: AGGACGCCTGCCACGAGGCCAGCATGCAGCTAGAGG...GCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGAGGGGCTCTGCTTCTaGGCCCGCTCTGGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: LASCPQDQDGCCPETLKPEGLCF*ARSGLL
Trigger: AAGAAGACCAGAGCGGGCCCAGAAGCAGAGCCCCTC...AGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAGGAGGCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCTTGTGGCGTCCTCCGTaGGGGAGCAGGTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: AHNRCSGLASCPQDQDGCLWRPP*GSRSGG
Trigger: ACCTCCTGACCTGCTCCCCCACGGAGGACGCCACAA...GCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGGAAGGGGCTCGGCACAACTGAGCCAGGCACCAAGGGTCTCTCTGTGAGCCGATGCGACTCCCCATTGTaGCGTCCTCCGTGGGGGAGC +
Preference number: 4 (lower is better)
Translates to: GKGLGTTEPGTKGLSVSRCDSPL*RPPWGS
Trigger: GCTCCCCCACGGAGGACGCCACAATGGGGAGTCGCA...TCGGCTCACAGAGAGACCCTTGGTGCCTGGCTCAGTTGTGCCGAGCCCCTTCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGGAAGGGGCTCGGCACAACTGAGCCAGGCACCAAGGGTCTCTCTGTGAGCCGAGGTACACAGGTCCTCTaGGTCCTGCGCGGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: GKGLGTTEPGTKGLSVSRGTQVL*VLRGAG
Trigger: TCCTGCGCCGCGCAGGACCCAGAGGACCTGTGTACC...TCGGCTCACAGAGAGACCCTTGGTGCCTGGCTCAGTTGTGCCGAGCCCCTTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCCGTTGTTCTTGGCATTaGTATAAGGGTCAAAGGGGC +
Preference number: 4 (lower is better)
Translates to: RCLQGRVLQVSAGPGRAGRCSWH*YKGQRG
Trigger: GCCCCTTTGACCCTTATATCAATGCCAAGAACAACG...GCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000114842.9
CDS-3UTR TCA 90 bp ACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCTGCTTGTGTCTGCTaGGGGCAGCAGCAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: TGPGSSVLQMRLSGLGQEPACVC*GQQQVC
Trigger: GCAGACCTGCTGCTGCCCTCAGCAGACACAAGCAGG...CTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCTCAGAGTCCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCATCTCGTACTTGGTGCTaGGGCTCCGCTTCGAGTCTG +
Preference number: 4 (lower is better)
Translates to: PQSPKSPAGTQGLQGGRPSRTWC*GSASSL
Trigger: CAGACTCGAAGCGGAGCCTCAGCACCAAGTACGAGA...TGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGGACTCTGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR GCA 90 bp AGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGTACTGGGCCGCGCAGTaGAGGGCCGTCTCATTGTCG +
Preference number: 4 (lower is better)
Translates to: SSQPLFRPGLLSPGPGWVYWAAQ*RAVSLS
Trigger: CGACAATGAGACGGCCCTGCACTGCGCGGCCCAGTA...CACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGAGCAGCTCATATGGGTaGTCCTCCTCTTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: PKSPAGTQGLQGGRPAKRSSSYG*SSSSWG
Trigger: TCCCCAGGAAGAGGAGGAGCACCCATATGAGCTGCT...CCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp ACCCCCTCCCGCAGCTGTCCTCAGCCCAAGGGGAGGATTCACAGTGTTGGGTGGCCTGGCTCCTCTAGCTaGATGCTGGCCTCGTGGCAG +
Preference number: 4 (lower is better)
Translates to: TPSRSCPQPKGRIHSVGWPGSSS*MLASWQ
Trigger: CTGCCACGAGGCCAGCATGCAGCTAGAGGAGCCAGG...CCACCCAACACTGTGAATCCTCCCCTTGGGCTGAGGACAGCTGCGGGAGGGGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR GCA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTAGCAGCTTCCGCCGGTaGTGTGGGTCACTGATGCCA +
Preference number: 4 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRSSFRR*CGSLMP
Trigger: TGGCATCAGTGACCCACAGCACCGGCGGAAGCTGCT...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCTGCGGCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAAGGAGCGTGCAGCCTaGAGCAGCTTCCGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: PAAVLMGTGEYSGVPHTRKERAA*SSFRRC
Trigger: GCACCGGCGGAAGCTGCTGCAGGCTGCACGCTCCTT...TCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGCCGCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTCTGCCGACCGCCCTGTaGAGGAATCATTCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: LASCPQDQDGCCPETLKPLPTAL*RNHSGS
Trigger: TGAGCCAGAATGATTCCTGCACAGGGCGGTCGGCAG...AGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAGGAGGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCCTGCCGACCGCCCTGTaGAGGAATCATTCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: ARCLASSLPPGQGPAGVGLPTAL*RNHSGS
Trigger: TGAGCCAGAATGATTCCTGCACAGGGCGGTCGGCAG...GCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCTGCTGTCGTGCCGCCTCCTaGTTGTGTCTGCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: AWVFSVADEALGAGAGACCRAAS*LCLLRA
Trigger: TGCCCTCAGCAGACACAAGCAGGAGGCGGCACGACA...GCAGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCTAGCTCCCAGGCAGGTGCTGGGGATTGCTGGACGATGGCTGTCTCAGGACCCTCGGGCAGGCTGTCGTaGCGCCTCCTGCTTGTGTCT +
Preference number: 4 (lower is better)
Translates to: ASSQAGAGDCWTMAVSGPSGRLS*RLLLVS
Trigger: AGACACAAGCAGGAGGCGGCACGACAGCCTGCCCGA...GGGTCCTGAGACAGCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAGCTAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR GCA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTAGGTCCTCTGGGTCCTaGGCGGCGCAGGAAATGTTC +
Preference number: 4 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRRSSGS*AAQEMF
Trigger: GAACATTTCCTGCGCCGCGCAGGACCCAGAGGACCT...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCTGCAGACTGGAGAGCGGGTaGCTAGAAGAACCGAGGCCG +
Preference number: 4 (lower is better)
Translates to: AWVFSVADEALGAGAGACRLESG*LEEPRP
Trigger: CGGCCTCGGTTCTTCTAGCCACCCGCTCTCCAGTCT...GCAGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCAGGGCGGCAGGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGAGACTGGAGAGCGGGTaGCTAGAAGAACCGAGGCCG +
Preference number: 4 (lower is better)
Translates to: AGRQASQEASKGSCGHCMRLESG*LEEPRP
Trigger: CGGCCTCGGTTCTTCTAGCCACCCGCTCTCCAGTCT...CATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCCTGCCGCCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCCTCCTCTTCATCGGGTaGCGGTTTTGCTGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: AHNRCSGLASCPQDQDGCLLFIG*RFCWRR
Trigger: CCGCCTCCAGCAAAACCGCCACCCGATGAAGAGGAG...GCACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCGACTCCGGGTGGCTCTaGCTGGGGGCCGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: LDRPLLGPSRVPVSSARCDSGWL*LGAVSS
Trigger: GCTGCTCACGGCCCCCAGCCAGAGCCACCCGGAGTC...GCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTCGAGGTATGTTCTGCTaGCCAGGGCTGTCAGGCCTG +
Preference number: 4 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRRGMFC*PGLSGL
Trigger: CAGGCCTGACAGCCCTGGCCAGCAGAACATACCTCG...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGCAATCAGCTTGGTCTCACTaGGCTCCTCCTGGACTCGGA +
Preference number: 4 (lower is better)
Translates to: KSPAGTQGLQGGRPAKRQSAWSH*APPGLG
Trigger: TCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGA...TTGCCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGCCGAGGCTTAGGCACTaGTTTGGAGGATTTTGTCTC +
Preference number: 4 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQEPRLRH*FGGFCL
Trigger: GAGACAAAATCCTCCAAACCAGTGCCTAAGCCTCGG...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
3UTR CAA 72 bp AGGTCCTACAGCAGGACTGGGCCTGGGTCTTCAGTGTaGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCT +
Preference number: 4 (lower is better)
Translates to: RSYSRTGPGSSV*QMRLSGLGQEP
Trigger: AGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTCCTGCTGTAGGACCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GGCCCAGGCCGAGCAGGCGACAGGAGGTCCTACAGCAGGACTGGGCCTGGGTCTTCTTGGTTTCTGCCGTaGGCAGCAGCTCATATGGGT +
Preference number: 4 (lower is better)
Translates to: GPGRAGDRRSYSRTGPGSSWFLP*AAAHMG
Trigger: ACCCATATGAGCTGCTGCTCACGGCAGAAACCAAGA...AGACCCAGGCCCAGTCCTGCTGTAGGACCTCCTGTCGCCTGCTCGGCCTGGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGGAACTTTCAGGACATTaGCAAGCTCTAGCTCCCAGA +
Preference number: 4 (lower is better)
Translates to: ASSLPPGQGPAGVGRPRPELSGH*QALAPR
Trigger: TCTGGGAGCTAGAGCTTGTCAATGTCCTGAAAGTTC...CGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGCAACGGTGGCCCAGCAGGTaGACTTTCAGGACATTGACA +
Preference number: 4 (lower is better)
Translates to: KSPAGTQGLQGGRPAKRQRWPSR*TFRTLT
Trigger: TGTCAATGTCCTGAAAGTTCACCTGCTGGGCCACCG...TTGCCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTTCTCGTACTTGGTGCTaGGGCTCCGCTTCGAGTCTG +
Preference number: 4 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRSRTWC*GSASSL
Trigger: CAGACTCGAAGCGGAGCCTCAGCACCAAGTACGAGA...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR GCA 90 bp GGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCTCGGCCCTCTCCACATaGTCAGCAGACTGGAGAGCG +
Preference number: 4 (lower is better)
Translates to: GQPRGKQGILWPLHEGLGSALST*SADWRA
Trigger: CGCTCTCCAGTCTGCTGAGCATGTGGAGAGGGCCGA...GCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTCCTGGCTCCGGCCGCTaGCGCTCTGCCTGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: ALNAAGRQPAGLQRETLLPGSGR*RSACGL
Trigger: AAGACCACAGGCAGAGCGGCAGCGGCCGGAGCCAGG...AAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTGGGACCTGCCCGTCCTaGCCCTCCACAGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: ALNAAGRQPAGLQRETLLGTCPS*PSTESW
Trigger: CCAGGACTCTGTGGAGGGGCAGGACGGGCAGGTCCC...AAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTTGGGCAAGGAGCGTaGAGCCTGCAGCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: PQGGSAQDCSSQPLFRPGLGQGA*SLQQLP
Trigger: CGGAAGCTGCTGCAGGCTGCACGCTCCTTGCCCAAG...GCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTGCTCACGTCTGCCGACCGCCCTGTaGAGGAATCATTCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: LSPGPGWVLPGDPEACSRLPTAL*RNHSGS
Trigger: TGAGCCAGAATGATTCCTGCACAGGGCGGTCGGCAG...ACGTGAGCAGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACTGTCGTGCCGCCTCCTaGTTGTGTCTGCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: PRIAAHNRCSGLASCPQDCRAAS*LCLLRA
Trigger: TGCCCTCAGCAGACACAAGCAGGAGGCGGCACGACA...GTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCATGTCGTGCCGCCTCCTaGTTGTGTCTGCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: VSSARCLASSLPPGQGPACRAAS*LCLLRA
Trigger: TGCCCTCAGCAGACACAAGCAGGAGGCGGCACGACA...TGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGATGTTCCGGATCTCGTaGTCCGCAATGACGTTCTTG +
Preference number: 4 (lower is better)
Translates to: PGVFAASRAGSCRCRQAQMFRIS*SAMTFL
Trigger: CAAGAACGTCATTGCGGAGCACGAGATCCGGAACAT...CTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGGAAGGGGCTCGGCACAACTGAGCCAGGCACCAAGGGTCTCTCTGTGAGCCGAAGACTGGAGAGCGGGTaGCTAGAAGAACCGAGGCCG +
Preference number: 4 (lower is better)
Translates to: GKGLGTTEPGTKGLSVSRRLESG*LEEPRP
Trigger: CGGCCTCGGTTCTTCTAGCCACCCGCTCTCCAGTCT...TCGGCTCACAGAGAGACCCTTGGTGCCTGGCTCAGTTGTGCCGAGCCCCTTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCTCAGAGTCCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCACAGTCCTCCCGTCTGTaGTCCCCAGCTTCTTGGTTT +
Preference number: 4 (lower is better)
Translates to: PQSPKSPAGTQGLQGGRPQSSRL*SPASWF
Trigger: AAACCAAGAAGCTGGGGACCACAGACGGGAGGACTG...TGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGGACTCTGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACGACTCCGGGTGGCTCTaGCTGGGGGCCGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: AVLMGTGEYSGVPHTRNYDSGWL*LGAVSS
Trigger: GCTGCTCACGGCCCCCAGCCAGAGCCACCCGGAGTC...GTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp ACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCGAGGTATGTTCTGCTaGCCAGGGCTGTCAGGCCTG +
Preference number: 4 (lower is better)
Translates to: TGPGSSVLQMRLSGLGQERGMFC*PGLSGL
Trigger: CAGGCCTGACAGCCCTGGCCAGCAGAACATACCTCG...CTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCTAGCTCCCAGGCAGGTGCTGGGGATTGCTGGACGATGGCTGTCTCAGGACCCCTTTGGGCTTGCTGGTaGGAGGGGCTCTGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: ASSQAGAGDCWTMAVSGPLWACW*EGLCFW
Trigger: CCAGAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAG...GGGTCCTGAGACAGCCATCGTCCAGCAATCCCCAGCACCTGCCTGGGAGCTAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR CCA 90 bp CAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTCTGGCCAGCTTTGGGCTTGCTaGTGGGAGGGGCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: QCSLGFAPTAEPTELTSGQLWAC*WEGLCF
Trigger: GAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTG...GCCAGAGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCGAGCTGGAAGCCCAGGGGGTGCACACTGTGCAGTGAGGTGGTCTATGCTGATTGCGACTCCCCATTGTaGCGTCCTCCGTGGGGGAGC +
Preference number: 4 (lower is better)
Translates to: PSWKPRGCTLCSEVVYADCDSPL*RPPWGS
Trigger: GCTCCCCCACGGAGGACGCCACAATGGGGAGTCGCA...ATCAGCATAGACCACCTCACTGCACAGTGTGCACCCCCTGGGCTTCCAGCTCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCTGCTTGGCACAGGCATCTTaGGTGGACTCTGTCCCTCGC +
Preference number: 4 (lower is better)
Translates to: AWVFSVADEALGAGAGACLAQAS*VDSVPR
Trigger: GCGAGGGACAGAGTCCACCCAAGATGCCTGTGCCAA...GCAGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGTTGACTTCCGCATTTTaGCACAGGCATCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: PGVFAASRAGSCRCRQAQLTSAF*HRHLGW
Trigger: CCACCCAAGATGCCTGTGCCAAAATGCGGAAGTCAA...CTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp ACCCCCTCCCGCAGCTGTCCTCAGCCCAAGGGGAGGATTCACAGTGTTGGGTGGAGGCCGCCATGGTCCTaGATTTCTGGGCTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: TPSRSCPQPKGRIHSVGWRPPWS*ISGLGG
Trigger: CCCTCCAAGCCCAGAAATCCAGGACCATGGCGGCCT...CCACCCAACACTGTGAATCCTCCCCTTGGGCTGAGGACAGCTGCGGGAGGGGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR TCA 90 bp GGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGAGGGCCCTTGCTGGATaGGCAGACGTACTATCTGGG +
Preference number: 4 (lower is better)
Translates to: GGSAQDCSSQPLFRPGLLRALAG*ADVLSG
Trigger: CCCAGATAGTACGTCTGCTCATCCAGCAAGGGCCCT...CAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCGCATGGTGGGGTCCGTaGGCTCCTCCAGCAGAGCCT +
Preference number: 4 (lower is better)
Translates to: LDRPLLGPSRVPVSSARCAWWGP*APPAEP
Trigger: AGGCTCTGCTGGAGGAGCTCACGGACCCCACCATGC...GCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGAGCATGTGTGTCAAAATaGAGGATCAGCTCAGTCACT +
Preference number: 4 (lower is better)
Translates to: LPPGQGPAGVGRPRPSRRACVSK*RISSVT
Trigger: AGTGACTGAGCTGATCCTTCATTTTGACACACATGC...TCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GTCTACAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTGCCGTGGAGGAGACCTaGGAACTGCTCTGGGACCTG +
Preference number: 4 (lower is better)
Translates to: VYSVPWALRPLQSPLSSPAVEET*ELLWDL
Trigger: CAGGTCCCAGAGCAGTTCTCAGGTCTCCTCCACGGC...AGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTGTAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp ACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCAGCGTCCGAGAACCTaGGATCTTCTGCTGCTCCTG +
Preference number: 4 (lower is better)
Translates to: TGPGSSVLQMRLSGLGQEQRPRT*DLLLLL
Trigger: CAGGAGCAGCAGAAGATCTCAGGTTCTCGGACGCTG...CTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CAGGACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGTGCTGTGGGTCACTaGTGCCAATCTCCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: QDWAWVFSVADEALGAGAGAVGH*CQSPSG
Trigger: ACCTGAGGGAGATTGGCATCAGTGACCCACAGCACC...TGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCTCAGAGTCCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCACGCAGGACTCAAAGATaGGCTTTTCTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: PQSPKSPAGTQGLQGGRPRRTQR*AFLAGA
Trigger: AGCACCAGCCAGAAAAGCTCATCTTTGAGTCCTGCG...TGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGGACTCTGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACGCCCCAGGGTCAGGATaGTCTCGTAGGTCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: PRIAAHNRCSGLASCPQDAPGSG*SRRSGS
Trigger: TGAACCTGACCTACGAGATCATCCTGACCCTGGGGC...GTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTTCGGCCCTCTCCACATaGTCAGCAGACTGGAGAGCG +
Preference number: 4 (lower is better)
Translates to: GPSRVPVSSARCLASSLPSALST*SADWRA
Trigger: CGCTCTCCAGTCTGCTGAGCATGTGGAGAGGGCCGA...AGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTCGGCCGCTGCCGCTCTaGCTGTGGTCTTCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSRPLPL*LWSSVL
Trigger: GAGGACTGAAGACCACAGGCAGAGCGGCAGCGGCCG...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCCCTGGCTCCGGCCGCTaGCGCTCTGCCTGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: SGTALVSHKRQRQSLPCGPGSGR*RSACGL
Trigger: AAGACCACAGGCAGAGCGGCAGCGGCCGGAGCCAGG...GCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCAGGAGACCTGAGAACTaGTCTGGGACCTGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: PQGGSAQDCSSQPLFRPGRRPEN*SGTCPS
Trigger: GGACGGGCAGGTCCCAGAGCAGTTCTCAGGTCTCCT...GCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTCTGGCCGTTCAGCAGCAGCTTaGTCTCGTACTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: QCSLGFAPTAEPTELTSGRSAAA*SRTAAG
Trigger: GCCTGCAGCAGTACGAGAGCAAGCTGCTGCTGAACG...GCCAGAGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCTGCGGCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAGCAGCTTCCGCCGGTaGTGTGGGTCACTGATGCCA +
Preference number: 4 (lower is better)
Translates to: PAAVLMGTGEYSGVPHTRSSFRR*CGSLMP
Trigger: TGGCATCAGTGACCCACAGCACCGGCGGAAGCTGCT...TCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGCCGCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GTCTACAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTCTTGGGCAAGGAGCGTaGAGCCTGCAGCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: VYSVPWALRPLQSPLSSPLGQGA*SLQQLP
Trigger: CGGAAGCTGCTGCAGGCTGCACGCTCCTTGCCCAAG...AGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTGTAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGCTTGGGCAAGGAGCGTaGAGCCTGCAGCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: QRETLLSTLSSHKVAVPRLGQGA*SLQQLP
Trigger: CGGAAGCTGCTGCAGGCTGCACGCTCCTTGCCCAAG...CCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCACTGCCGACCGCCCTGTaGAGGAATCATTCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: VSSARCLASSLPPGQGPALPTAL*RNHSGS
Trigger: TGAGCCAGAATGATTCCTGCACAGGGCGGTCGGCAG...TGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGGGATCTTCTTCATGTaGTCCGTTGACTTCCGCATT +
Preference number: 4 (lower is better)
Translates to: PGVFAASRAGSCRCRQAQGIFFM*SVDFRI
Trigger: AATGCGGAAGTCAACGGAGCACATGAAGAAGATCCC...CTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGGATGGGTGTGCAGCTCAGGAGATTaGGGTGTGCACCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: SSQPLFRPGLLSPGPGWVCSSGD*GVHPAA
Trigger: TGCTGCTGGGTGCACACCCCAATCTCCTGAGCTGCA...CACCCATCCTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTGCCATTCCGGGTGGCGGTTTTGCTaGAGGCGGCGGACGTTCCCT +
Preference number: 4 (lower is better)
Translates to: KQGILWPLHEGLGTSCHSGWRFC*RRRTFP
Trigger: AGGGAACGTCCGCCGCCTCCAGCAAAACCGCCACCC...GGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCTCCTCTTCATCGGGTaGCGGTTTTGCTGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: GPSRVPVSSARCLASSLPLLFIG*RFCWRR
Trigger: CCGCCTCCAGCAAAACCGCCACCCGATGAAGAGGAG...AGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp ATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAGCGGGGCCGTGAGCAGCTaGAAAGGGTCCTGCCCCACC +
Preference number: 4 (lower is better)
Translates to: MPQQSHFSLPTWLHWPSSGAVSS*KGSCPT
Trigger: GGTGGGGCAGGACCCTTTCCAGCTGCTCACGGCCCC...GCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCTGCATGCTGGCCTCGTaGCAGGCGTCCTGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: LDRPLLGPSRVPVSSARCCMLAS*QASCWE
Trigger: CTCCCAGCAGGACGCCTGCCACGAGGCCAGCATGCA...GCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGGGCACGTCTTGCCATTCCCACCAGAACGGCTCCTTCACAGTTCAGGCACAGCTGCATGCTGGCCTCGTaGCAGGCGTCCTGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: WARLAIPTRTAPSQFRHSCMLAS*QASCWE
Trigger: CTCCCAGCAGGACGCCTGCCACGAGGCCAGCATGCA...GCTGTGCCTGAACTGTGAAGGAGCCGTTCTGGTGGGAATGGCAAGACGTGCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGCGAGGTATGTTCTGCTaGCCAGGGCTGTCAGGCCTG +
Preference number: 4 (lower is better)
Translates to: RIAAHNRCSGLASCPQDQRGMFC*PGLSGL
Trigger: CAGGCCTGACAGCCCTGGCCAGCAGAACATACCTCG...CTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCAGCTTTGGGCTTGCTaGTGGGAGGGGCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: PQGGSAQDCSSQPLFRPGQLWAC*WEGLCF
Trigger: GAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTG...GCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGATCCCGATGCTGCAGTTaGACAAGGACTCGCTGCGAC +
Preference number: 4 (lower is better)
Translates to: DWAWVFSVADEALGAGAGSRCCS*TRTRCD
Trigger: GTCGCAGCGAGTCCTTGTCCAACTGCAGCATCGGGA...TCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp ACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCTTCCGCCGGTGCTGTaGGTCACTGATGCCAATCTC +
Preference number: 4 (lower is better)
Translates to: TGPGSSVLQMRLSGLGQELPPVL*VTDANL
Trigger: GAGATTGGCATCAGTGACCCACAGCACCGGCGGAAG...CTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCATCAGCTTGGTCTCACTaGGCTCCTCCTGGACTCGGA +
Preference number: 4 (lower is better)
Translates to: VSSARCLASSLPPGQGPASAWSH*APPGLG
Trigger: TCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGA...TGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTGCATGGTGGGGTCCGTaGGCTCCTCCAGCAGAGCCT +
Preference number: 4 (lower is better)
Translates to: CEGRGCLRVSGPSQVLSCAWWGP*APPAEP
Trigger: AGGCTCTGCTGGAGGAGCTCACGGACCCCACCATGC...ACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCTGGGGAGCACTACTCTaGATCCTGGGTCTCACAGCC +
Preference number: 4 (lower is better)
Translates to: PQGGSAQDCSSQPLFRPGWGALL*ILGLTA
Trigger: GGCTGTGAGACCCAGGATTCAGAGTAGTGCTCCCCA...GCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AGAGCCCATTGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCGCCGTGGAGGAGACCTaGGAACTGCTCTGGGACCTG +
Preference number: 4 (lower is better)
Translates to: RAHCEGRGCLRVSGPSQVAVEET*ELLWDL
Trigger: CAGGTCCCAGAGCAGTTCTCAGGTCTCCTCCACGGC...GACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGCCCCAATGGAGCTCATaGTTTTCTCAATCTCATCCC +
Preference number: 4 (lower is better)
Translates to: PKSPAGTQGLQGGRPAKRPQWSS*FSQSHP
Trigger: GGGATGAGATTGAGAAAATCATGAGCTCCATTGGGG...CCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCAGCGTCCGAGAACCTaGGATCTTCTGCTGCTCCTG +
Preference number: 4 (lower is better)
Translates to: PQGGSAQDCSSQPLFRPGQRPRT*DLLLLL
Trigger: CAGGAGCAGCAGAAGATCTCAGGTTCTCGGACGCTG...GCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GTGCCTATGAGGCCCCCTTCAAAGGCAAGTCACCCCCTCCCGCAGCTGTCCTCAGGTGCTGTGGGTCACTaGTGCCAATCTCCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: VPMRPPSKASHPLPQLSSGAVGH*CQSPSG
Trigger: ACCTGAGGGAGATTGGCATCAGTGACCCACAGCACC...TGAGGACAGCTGCGGGAGGGGGTGACTTGCCTTTGAAGGGGGCCTCATAGGCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR TCA 90 bp AAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGCAATCCCTCGCAGATCTTTaGTCAGCATGGAACCCAGAT +
Preference number: 4 (lower is better)
Translates to: KSPAGTQGLQGGRPAKRQSLADL*SAWNPD
Trigger: ATCTGGGTTCCATGCTGATCAAAGATCTGCGAGGGA...TTGCCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGGCCTCCTGTCCCCAGGACCAGGATGGGTGCTGCCCGGAGACCCTGAAGCCTCCTCATGCAAAGCACTaGCCATCTCCGTCTGATAGT +
Preference number: 4 (lower is better)
Translates to: LASCPQDQDGCCPETLKPPHAKH*PSPSDS
Trigger: ACTATCAGACGGAGATGGGCAGTGCTTTGCATGAGG...AGGCTTCAGGGTCTCCGGGCAGCACCCATCCTGGTCCTGGGGACAGGAGGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTTCTGCAAAGCAGGGTGGCTCCTCAGTGGCTCAGCTTGGCAGAAGCAAACAGTTCGTGGCAGGCGTCCTaGTGGGAGGACTCCGGGTGG +
Preference number: 4 (lower is better)
Translates to: LLQSRVAPQWLSLAEANSSWQAS*WEDSGW
Trigger: CCACCCGGAGTCCTCCCAGCAGGACGCCTGCCACGA...ACTGTTTGCTTCTGCCAAGCTGAGCCACTGAGGAGCCACCCTGCTTTGCAGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR GCA 90 bp AGAGCCCATTGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCGCTCAGCTTTGGGCTTaGTGGTGGGAGGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: RAHCEGRGCLRVSGPSQVAQLWA*WWEGLC
Trigger: GCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTGAGC...GACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp ATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAGCAAGGAGCGTGCAGCCTaGAGCAGCTTCCGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: MPQQSHFSLPTWLHWPSSKERAA*SSFRRC
Trigger: GCACCGGCGGAAGCTGCTGCAGGCTGCACGCTCCTT...GCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGAGCCCATTGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTTGGGCAAGGAGCGTaGAGCCTGCAGCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: RAHCEGRGCLRVSGPSQVLGQGA*SLQQLP
Trigger: CGGAAGCTGCTGCAGGCTGCACGCTCCTTGCCCAAG...GACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGGGCAGCAGCAGGTCTaGCGACCGCCCTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: RSTEGNPAFHSEQPQGGSGQQQV*RPPCAG
Trigger: TCCTGCACAGGGCGGTCGGCAGACCTGCTGCTGCCC...ACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCTCGGGCAGGCTGTCGTaGCGCCTCCTGCTTGTGTCT +
Preference number: 4 (lower is better)
Translates to: LDRPLLGPSRVPVSSARCSGRLS*RLLLVS
Trigger: AGACACAAGCAGGAGGCGGCACGACAGCCTGCCCGA...GCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCATGTTCCGGATCTCGTaGTCCGCAATGACGTTCTTG +
Preference number: 4 (lower is better)
Translates to: ARCLASSLPPGQGPAGVGMFRIS*SAMTFL
Trigger: CAAGAACGTCATTGCGGAGCACGAGATCCGGAACAT...GCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp ACTGGCTCGGGCAGACACTGCACTATACTGTCTGCACCACGGCCACGGGGATCAAGGTCCTCTGGGTCCTaGGCGGCGCAGGAAATGTTC +
Preference number: 4 (lower is better)
Translates to: TGSGRHCTILSAPRPRGSRSSGS*AAQEMF
Trigger: GAACATTTCCTGCGCCGCGCAGGACCCAGAGGACCT...TGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCAGTGTCTGCCCGAGCCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR GCA 90 bp CAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGAGGTCCTCTGGGTCCTaGGCGGCGCAGGAAATGTTC +
Preference number: 4 (lower is better)
Translates to: QRETLLSTLSSHKVAVPRRSSGS*AAQEMF
Trigger: GAACATTTCCTGCGCCGCGCAGGACCCAGAGGACCT...CCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGATAGGCCACCTCAAATaGCTGCCCCAGGGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: GGSAQDCSSQPLFRPGLLIGHLK*LPQGQD
Trigger: ATCCTGACCCTGGGGCAGGCATTTGAGGTGGCCTAT...CAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGAGGTAGCTGGGCTGTaGAGGTCCTGTCCACTTCTT +
Preference number: 4 (lower is better)
Translates to: VSSARCLASSLPPGQGPAEVAGL*RSCPLL
Trigger: AAGAAGTGGACAGGACCTCCACAGCCCAGCTACCTC...TGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACGGGTGGCGGTTTTGCTaGAGGCGGCGGACGTTCCCT +
Preference number: 4 (lower is better)
Translates to: AVLMGTGEYSGVPHTRNYGWRFC*RRRTFP
Trigger: AGGGAACGTCCGCCGCCTCCAGCAAAACCGCCACCC...GTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTGACTCCGGGTGGCTCTaGCTGGGGGCCGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: QKHMSWTGHFLGHPEFRSDSGWL*LGAVSS
Trigger: GCTGCTCACGGCCCCCAGCCAGAGCCACCCGGAGTC...AGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACCTCTAGCTGCATGCTaGCCTCGTGGCAGGCGTCCT +
Preference number: 4 (lower is better)
Translates to: QTARRSTEGNPAFHSEQPPLAAC*PRGRRP
Trigger: AGGACGCCTGCCACGAGGCCAGCATGCAGCTAGAGG...TGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTCCTCTAGCTGCATGCTaGCCTCGTGGCAGGCGTCCT +
Preference number: 4 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSPLAAC*PRGRRP
Trigger: AGGACGCCTGCCACGAGGCCAGCATGCAGCTAGAGG...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCCTGGCTCCTTCCCAGAGAGGAGCTGTACCCAGCAGCTGCTGCACTGAATGCACTTTGGGCTTGCTGGTaGGAGGGGCTCTGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: PWLLPREELYPAAAALNALWACW*EGLCFW
Trigger: CCAGAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAG...TGCATTCAGTGCAGCAGCTGCTGGGTACAGCTCCTCTCTGGGAAGGAGCCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGTTGTGGCGTCCTCCGTaGGGGAGCAGGTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: SRQTARRSTEGNPAFHSELWRPP*GSRSGG
Trigger: ACCTCCTGACCTGCTCCCCCACGGAGGACGCCACAA...CTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGGCCCATCTGCTCAGAAAGGCACAAGGAAAGGCAGGCAGCCGAAGGGCCCACTTGGCACAGGCATCTTaGGTGGACTCTGTCCCTCGC +
Preference number: 4 (lower is better)
Translates to: LAHLLRKAQGKAGSRRAHLAQAS*VDSVPR
Trigger: GCGAGGGACAGAGTCCACCCAAGATGCCTGTGCCAA...GTGGGCCCTTCGGCTGCCTGCCTTTCCTTGTGCCTTTCTGAGCAGATGGGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR CCA 90 bp AGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGTTGGCACAGGCATCTTaGGTGGACTCTGTCCCTCGC +
Preference number: 4 (lower is better)
Translates to: RIAAHNRCSGLASCPQDQLAQAS*VDSVPR
Trigger: GCGAGGGACAGAGTCCACCCAAGATGCCTGTGCCAA...CTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACGGTACACAGGTCCTCTaGGTCCTGCGCGGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: AVLMGTGEYSGVPHTRNYGTQVL*VLRGAG
Trigger: TCCTGCGCCGCGCAGGACCCAGAGGACCTGTGTACC...GTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCAGGAAGGACGGTGAGTaGTGCAGGTGTGACAGTGAC +
Preference number: 4 (lower is better)
Translates to: SARCLASSLPPGQGPAGVRKDGE*CRCDSD
Trigger: GTCACTGTCACACCTGCACCACTCACCGTCCTTCCT...GACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000233309.2
CDS-3UTR TCA 90 bp GTCTACAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTAGGGCCCTTGCTGGATaGGCAGACGTACTATCTGGG +
Preference number: 4 (lower is better)
Translates to: VYSVPWALRPLQSPLSSPRALAG*ADVLSG
Trigger: CCCAGATAGTACGTCTGCTCATCCAGCAAGGGCCCT...AGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTGTAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTGAGCATTCTGTTCGTTaGCTCTGGTGTGTGAGGGCC +
Preference number: 4 (lower is better)
Translates to: GPSRVPVSSARCLASSLPEHSVR*LWCVRA
Trigger: GGCCCTCACACACCAGAGTCAACGAACAGAATGCTC...AGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000114842.9
CDS-3UTR TCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCGCATGGTGGGGTCCGTaGGCTCCTCCAGCAGAGCCT +
Preference number: 4 (lower is better)
Translates to: SMPQQSHFSLPTWLHWPSAWWGP*APPAEP
Trigger: AGGCTCTGCTGGAGGAGCTCACGGACCCCACCATGC...GCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCTCACAGTGCCTGGCTTTGGGGGCCTCAACCCCACTCTGGTGCCTATGAGGCCTTCTCCATACTCCCCTaGGACATTGGTGCTATGGCG +
Preference number: 4 (lower is better)
Translates to: PHSAWLWGPQPHSGAYEAFSILP*DIGAMA
Trigger: CGCCATAGCACCAATGTCTCAGGGGAGTATGGAGAA...GGCCTCATAGGCACCAGAGTGGGGTTGAGGCCCCCAAAGCCAGGCACTGTGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR TCA 90 bp GTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCATCTTGGTTTCTGCCGTaGGCAGCAGCTCATATGGGT +
Preference number: 4 (lower is better)
Translates to: VSSARCLASSLPPGQGPASWFLP*AAAHMG
Trigger: ACCCATATGAGCTGCTGCTCACGGCAGAAACCAAGA...TGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGCGGTGGCCCAGCAGGTaGACTTTCAGGACATTGACA +
Preference number: 4 (lower is better)
Translates to: RIAAHNRCSGLASCPQDQRWPSR*TFRTLT
Trigger: TGTCAATGTCCTGAAAGTTCACCTGCTGGGCCACCG...CTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGACGCAGGACTCAAAGATaGGCTTTTCTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: DWAWVFSVADEALGAGAGRRTQR*AFLAGA
Trigger: AGCACCAGCCAGAAAAGCTCATCTTTGAGTCCTGCG...TCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCTGCTCTCGTGCTCCGCAATaGCGTTCTTGTTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: AWVFSVADEALGAGAGACSRAPQ*RSCWKH
Trigger: ATGCTTCCAACAAGAACGTCATTGCGGAGCACGAGA...GCAGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GTCTACAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTGCCCCAGGGTCAGGATaGTCTCGTAGGTCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: VYSVPWALRPLQSPLSSPAPGSG*SRRSGS
Trigger: TGAACCTGACCTACGAGATCATCCTGACCCTGGGGC...AGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTGTAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATTACTGGGCCGCGCAGTaGAGGGCCGTCTCATTGTCG +
Preference number: 4 (lower is better)
Translates to: SWTGHFLGHPEFRSPLLDYWAAQ*RAVSLS
Trigger: CGACAATGAGACGGCCCTGCACTGCGCGGCCCAGTA...ATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCAGGGCGGCAGGCCAGCCAAGAGGCAAGCAAGGGATCCTGTGGCCACTGCATGCAGCTTCTTGGTTTCTaGCGTGAGCAGCAGCTCATA +
Preference number: 4 (lower is better)
Translates to: AGRQASQEASKGSCGHCMQLLGF*REQQLI
Trigger: TATGAGCTGCTGCTCACGGCAGAAACCAAGAAGCTG...CATGCAGTGGCCACAGGATCCCTTGCTTGCCTCTTGGCTGGCCTGCCGCCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGAGCCCATTGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCAGGAGACCTGAGAACTaGTCTGGGACCTGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: RAHCEGRGCLRVSGPSQVRRPEN*SGTCPS
Trigger: GGACGGGCAGGTCCCAGAGCAGTTCTCAGGTCTCCT...GACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCACATCGAGGTATGTTCTaGTGGCCAGGGCTGTCAGGC +
Preference number: 4 (lower is better)
Translates to: PSRVPVSSARCLASSLPPHRGMF*WPGLSG
Trigger: GCCTGACAGCCCTGGCCAGCAGAACATACCTCGATG...TGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGCACTATACTGTCTGCACCACGGCCACGGGGATCACTTCTGTCTCCTGCCATCGCTCAGCTTTGGGCTTaGTGGTGGGAGGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: CTILSAPRPRGSLLSPAIAQLWA*WWEGLC
Trigger: GCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTGAGC...GATGGCAGGAGACAGAAGTGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR GCA 90 bp AGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGTTGCTCTCGTACTGCTaGAGGCCAATCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: RIAAHNRCSGLASCPQDQLLSYC*RPIDSS
Trigger: GCTGGAGTCGATTGGCCTGCAGCAGTACGAGAGCAA...CTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTTTGCTCTCGTACTGCTaGAGGCCAATCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: GPSRVPVSSARCLASSLPLLSYC*RPIDSS
Trigger: GCTGGAGTCGATTGGCCTGCAGCAGTACGAGAGCAA...AGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGAGCTTGCTCTCGTACTaGTGCAGGCCAATCGACTCC +
Preference number: 4 (lower is better)
Translates to: RIAAHNRCSGLASCPQDQSLLSY*CRPIDS
Trigger: GGAGTCGATTGGCCTGCAGCAGTACGAGAGCAAGCT...CTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCATCTCCCTCAGGTCCTaGTCTTCCATCACATTAGAC +
Preference number: 4 (lower is better)
Translates to: ARCLASSLPPGQGPAGVGISLRS*SSITLD
Trigger: GTCTAATGTGATGGAAGAGCAGGACCTGAGGGAGAT...GCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACTTGCTTATCCCCTCGGGCAGGCTGTCGTaGCGCCTCCTGCTTGTGTCT +
Preference number: 4 (lower is better)
Translates to: GTGEYSGVPHTRNYLLIPSGRLS*RLLLVS
Trigger: AGACACAAGCAGGAGGCGGCACGACAGCCTGCCCGA...GGGGATAAGCAAGTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTCGGGCAGGCTGTCGTaGCGCCTCCTGCTTGTGTCT +
Preference number: 4 (lower is better)
Translates to: CEGRGCLRVSGPSQVLSCSGRLS*RLLLVS
Trigger: AGACACAAGCAGGAGGCGGCACGACAGCCTGCCCGA...ACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGTCGGGCAGGCTGTCGTaGCGCCTCCTGCTTGTGTCT +
Preference number: 4 (lower is better)
Translates to: GLQRETLLSTLSSHKVAVSGRLS*RLLLVS
Trigger: AGACACAAGCAGGAGGCGGCACGACAGCCTGCCCGA...CACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTGCCATTCCAGGTCCTCTGGGTCCTaGGCGGCGCAGGAAATGTTC +
Preference number: 4 (lower is better)
Translates to: KQGILWPLHEGLGTSCHSRSSGS*AAQEMF
Trigger: GAACATTTCCTGCGCCGCGCAGGACCCAGAGGACCT...GGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCAAGGTCCTCTGGGTCCTaGGCGGCGCAGGAAATGTTC +
Preference number: 4 (lower is better)
Translates to: QTARRSTEGNPAFHSEQPRSSGS*AAQEMF
Trigger: GAACATTTCCTGCGCCGCGCAGGACCCAGAGGACCT...TGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGATGTGAGGGCCCTTGCTaGATGAGCAGACGTACTATC +
Preference number: 4 (lower is better)
Translates to: DWAWVFSVADEALGAGAGCEGPC*MSRRTI
Trigger: GATAGTACGTCTGCTCATCCAGCAAGGGCCCTCACA...TCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCGAGCTGGAAGCCCAGGGGGTGCACACTGTGCAGTGAGGTGGTCTATGCTGATTGCAGCTCAGGAGATTaGGGTGTGCACCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: PSWKPRGCTLCSEVVYADCSSGD*GVHPAA
Trigger: TGCTGCTGGGTGCACACCCCAATCTCCTGAGCTGCA...ATCAGCATAGACCACCTCACTGCACAGTGTGCACCCCCTGGGCTTCCAGCTCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCTGCGGCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAGAGGTAGCTGGGCTGTaGAGGTCCTGTCCACTTCTT +
Preference number: 4 (lower is better)
Translates to: PAAVLMGTGEYSGVPHTREVAGL*RSCPLL
Trigger: AAGAAGTGGACAGGACCTCCACAGCCCAGCTACCTC...TCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGCCGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGCCGCTCTGCCTGTaGTCTTCAGTCCTCCCGTCT +
Preference number: 4 (lower is better)
Translates to: LDRPLLGPSRVPVSSARCLPLCL*SSVLPS
Trigger: AGACGGGAGGACTGAAGACCACAGGCAGAGCGGCAG...GCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTGCCATTCCGAGGGGCTCTGCTTCTaGGCCCGCTCTGGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: KQGILWPLHEGLGTSCHSEGLCF*ARSGLL
Trigger: AAGAAGACCAGAGCGGGCCCAGAAGCAGAGCCCCTC...GGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGAGCCCATTGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCGAGGGGCTCTGCTTCTaGGCCCGCTCTGGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: RAHCEGRGCLRVSGPSQVEGLCF*ARSGLL
Trigger: AAGAAGACCAGAGCGGGCCCAGAAGCAGAGCCCCTC...GACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp ACTGGCTCGGGCAGACACTGCACTATACTGTCTGCACCACGGCCACGGGGATCACTTCCGCCGGTGCTGTaGGTCACTGATGCCAATCTC +
Preference number: 4 (lower is better)
Translates to: TGSGRHCTILSAPRPRGSLPPVL*VTDANL
Trigger: GAGATTGGCATCAGTGACCCACAGCACCGGCGGAAG...TGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCAGTGTCTGCCCGAGCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR CCA 90 bp CTGTACCCAGCAGCTGCTGCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACTTCCGCCGGTGCTGTaGGTCACTGATGCCAATCTC +
Preference number: 4 (lower is better)
Translates to: LYPAAAALNAAGRQPAGLLPPVL*VTDANL
Trigger: GAGATTGGCATCAGTGACCCACAGCACCGGCGGAAG...TAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGCAGCAGCTGCTGGGTACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGCTTCCGCCGGTGCTGTaGGTCACTGATGCCAATCTC +
Preference number: 4 (lower is better)
Translates to: QRETLLSTLSSHKVAVPRLPPVL*VTDANL
Trigger: GAGATTGGCATCAGTGACCCACAGCACCGGCGGAAG...CCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CGACCCCAGCAGCCTGCCCCTCACTGCTCCTTAAGCCCAGGAGGTGGCTCTCCATGGAGCTGTAGCCACTaGACAGGAAAGAGTGGACAT +
Preference number: 4 (lower is better)
Translates to: RPQQPAPHCSLSPGGGSPWSCSH*TGKSGH
Trigger: ATGTCCACTCTTTCCTGTCCAGTGGCTACAGCTCCA...TGGAGAGCCACCTCCTGGGCTTAAGGAGCAGTGAGGGGCAGGCTGCTGGGGTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGAGCCCATTGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCGACGGAGGGTCAGCTTaGTCTCACTGGGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: RAHCEGRGCLRVSGPSQVDGGSA*SHWAPP
Trigger: AGGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTC...GACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGTACCCAGCAGCTGCTGCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTATTGGCACAGGCATCTTaGGTGGACTCTGTCCCTCGC +
Preference number: 4 (lower is better)
Translates to: LYPAAAALNAAGRQPAGLLAQAS*VDSVPR
Trigger: GCGAGGGACAGAGTCCACCCAAGATGCCTGTGCCAA...TAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGCAGCAGCTGCTGGGTACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGGTACACAGGTCCTCTaGGTCCTGCGCGGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: RSTEGNPAFHSEQPQGGSGTQVL*VLRGAG
Trigger: TCCTGCGCCGCGCAGGACCCAGAGGACCTGTGTACC...ACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCAGGCCGCCATGGTCCTaGATTTCTGGGCTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: FLGHPEFRSPLLDAWRLRRPPWS*ISGLGG
Trigger: CCCTCCAAGCCCAGAAATCCAGGACCATGGCGGCCT...GCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGGGCACGTCTTGCCATTCCCACCAGAACGGCTCCTTCACAGTTCAGGCACAGCAGGCCGCCATGGTCCTaGATTTCTGGGCTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: WARLAIPTRTAPSQFRHSRPPWS*ISGLGG
Trigger: CCCTCCAAGCCCAGAAATCCAGGACCATGGCGGCCT...GCTGTGCCTGAACTGTGAAGGAGCCGTTCTGGTGGGAATGGCAAGACGTGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCAGGGCCCTTGCTGGATaGGCAGACGTACTATCTGGG +
Preference number: 4 (lower is better)
Translates to: FLGHPEFRSPLLDAWRLRRALAG*ADVLSG
Trigger: CCCAGATAGTACGTCTGCTCATCCAGCAAGGGCCCT...GCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTAGGGCCCTTGCTGGATaGGCAGACGTACTATCTGGG +
Preference number: 4 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSRALAG*ADVLSG
Trigger: CCCAGATAGTACGTCTGCTCATCCAGCAAGGGCCCT...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCGGTGCTGTGGGTCACTaGTGCCAATCTCCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: FLGHPEFRSPLLDAWRLRGAVGH*CQSPSG
Trigger: ACCTGAGGGAGATTGGCATCAGTGACCCACAGCACC...GCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGAGGTGCTGTGGGTCACTaGTGCCAATCTCCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: VLDRPLLGPSRVPVSSARGAVGH*CQSPSG
Trigger: ACCTGAGGGAGATTGGCATCAGTGACCCACAGCACC...TCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGCCTGCGAACTTTCAGGACATTaGCAAGCTCTAGCTCCCAGA +
Preference number: 4 (lower is better)
Translates to: AWVFSVADEALGAGAGACELSGH*QALAPR
Trigger: TCTGGGAGCTAGAGCTTGTCAATGTCCTGAAAGTTC...GCAGGCTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCACGGTGGCCCAGCAGGTaGACTTTCAGGACATTGACA +
Preference number: 4 (lower is better)
Translates to: PSRVPVSSARCLASSLPPRWPSR*TFRTLT
Trigger: TGTCAATGTCCTGAAAGTTCACCTGCTGGGCCACCG...TGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCGCAGGACTCAAAGATaGGCTTTTCTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: GPSRVPVSSARCLASSLPRRTQR*AFLAGA
Trigger: AGCACCAGCCAGAAAAGCTCATCTTTGAGTCCTGCG...AGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCGCCCCAGGGTCAGGATaGTCTCGTAGGTCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: FLGHPEFRSPLLDAWRLRAPGSG*SRRSGS
Trigger: TGAACCTGACCTACGAGATCATCCTGACCCTGGGGC...GCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATTCGGCCCTCTCCACATaGTCAGCAGACTGGAGAGCG +
Preference number: 4 (lower is better)
Translates to: SWTGHFLGHPEFRSPLLDSALST*SADWRA
Trigger: CGCTCTCCAGTCTGCTGAGCATGTGGAGAGGGCCGA...ATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCTACTGGGCCGCGCAGTaGAGGGCCGTCTCATTGTCG +
Preference number: 4 (lower is better)
Translates to: SMPQQSHFSLPTWLHWPSYWAAQ*RAVSLS
Trigger: CGACAATGAGACGGCCCTGCACTGCGCGGCCCAGTA...GCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp ACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGAGAACAAAGCAGCCTCATaGAAAGCACTGCCCATCTCC +
Preference number: 4 (lower is better)
Translates to: TGPGSSVLQMRLSGLGQENKAAS*KALPIS
Trigger: GGAGATGGGCAGTGCTTTGCATGAGGCTGCTTTGTT...CTCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTCTGGCCAGGCCCTCAGAGGCTaGCAAGGGAAAATACTTCTT +
Preference number: 4 (lower is better)
Translates to: QCSLGFAPTAEPTELTSGQALRG*QGKILL
Trigger: AAGAAGTATTTTCCCTTGGCAGCCTCTGAGGGCCTG...GCCAGAGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGAGTGCAGCTTGAACTCATCGTAGTGTCTACAGTGTTCCCTGGGCTTTGCGCCCGGCCGCTGCCGCTCTaGCTGTGGTCTTCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: RVQLELIVVSTVFPGLCARPLPL*LWSSVL
Trigger: GAGGACTGAAGACCACAGGCAGAGCGGCAGCGGCCG...GGCGCAAAGCCCAGGGAACACTGTAGACACTACGATGAGTTCAAGCTGCACTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGTCGTGGCAGGCGTCCTaGTGGGAGGACTCCGGGTGG +
Preference number: 4 (lower is better)
Translates to: FHTSAKGRAFHVALVLKRSWQAS*WEDSGW
Trigger: CCACCCGGAGTCCTCCCAGCAGGACGCCTGCCACGA...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCCCTGGCTCCTCTAGCTaGATGCTGGCCTCGTGGCAG +
Preference number: 4 (lower is better)
Translates to: SMPQQSHFSLPTWLHWPSPGSSS*MLASWQ
Trigger: CTGCCACGAGGCCAGCATGCAGCTAGAGGAGCCAGG...GCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAAAGGAGCGTGCAGCCTaGAGCAGCTTCCGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKKERAA*SSFRRC
Trigger: GCACCGGCGGAAGCTGCTGCAGGCTGCACGCTCCTT...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCCTGCCGACCGCCCTGTaGAGGAATCATTCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: FLGHPEFRSPLLDAWRLRLPTAL*RNHSGS
Trigger: TGAGCCAGAATGATTCCTGCACAGGGCGGTCGGCAG...GCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGTGTCGTGCCGCCTCCTaGTTGTGTCTGCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: GLQRETLLSTLSSHKVAVCRAAS*LCLLRA
Trigger: TGCCCTCAGCAGACACAAGCAGGAGGCGGCACGACA...CACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAAAGGGAGCTACTGTGGTTCTGCTGGAAGACCACCCTCACCTCACAGTGCCTGTGTCGTGCCGCCTCCTaGTTGTGTCTGCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: QRELLWFCWKTTLTSQCLCRAAS*LCLLRA
Trigger: TGCCCTCAGCAGACACAAGCAGGAGGCGGCACGACA...CAGGCACTGTGAGGTGAGGGTGGTCTTCCAGCAGAACCACAGTAGCTCCCTTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR GCA 90 bp CCCTGGCTCCTTCCCAGAGAGGAGCTGTACCCAGCAGCTGCTGCACTGAATGCAATAGGCCACCTCAAATaGCTGCCCCAGGGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: PWLLPREELYPAAAALNAIGHLK*LPQGQD
Trigger: ATCCTGACCCTGGGGCAGGCATTTGAGGTGGCCTAT...TGCATTCAGTGCAGCAGCTGCTGGGTACAGCTCCTCTCTGGGAAGGAGCCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAATAGGCCACCTCAAATaGCTGCCCCAGGGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: PSRVPVSSARCLASSLPPIGHLK*LPQGQD
Trigger: ATCCTGACCCTGGGGCAGGCATTTGAGGTGGCCTAT...TGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTGCCATTCCTGCAGCTCAGGAGATTaGGGTGTGCACCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: KQGILWPLHEGLGTSCHSCSSGD*GVHPAA
Trigger: TGCTGCTGGGTGCACACCCCAATCTCCTGAGCTGCA...GGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTTGCACCACGGCCTTGTaGCCATTCCTTGCTGCCAAG +
Preference number: 4 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSCTTAL*PFLAAK
Trigger: CTTGGCAGCAAGGAATGGCCACAAGGCCGTGGTGCA...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGACGGCCTCCTTGTTCATaGAGTCTCTGTCTGATGATC +
Preference number: 4 (lower is better)
Translates to: DWAWVFSVADEALGAGAGRPPCS*SLCLMI
Trigger: GATCATCAGACAGAGACTCCATGAACAAGGAGGCCG...TCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATCTCCTCTTCATCGGGTaGCGGTTTTGCTGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: SWTGHFLGHPEFRSPLLDLLFIG*RFCWRR
Trigger: CCGCCTCCAGCAAAACCGCCACCCGATGAAGAGGAG...ATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCACTATACTGTCTGCACCACGGCCACGGGGATCACTTCTGTCTCCTGCCATCCTGCCGCTCTGCCTGTaGTCTTCAGTCCTCCCGTCT +
Preference number: 4 (lower is better)
Translates to: CTILSAPRPRGSLLSPAILPLCL*SSVLPS
Trigger: AGACGGGAGGACTGAAGACCACAGGCAGAGCGGCAG...GATGGCAGGAGACAGAAGTGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR CCA 90 bp GCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAAGAGGGGCTCTGCTTCTaGGCCCGCTCTGGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: AFHSEQPQGGSAQDCSSQEGLCF*ARSGLL
Trigger: AAGAAGACCAGAGCGGGCCCAGAAGCAGAGCCCCTC...TTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCTTGTGGCGTCCTCCGTaGGGGAGCAGGTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: SMPQQSHFSLPTWLHWPSLWRPP*GSRSGG
Trigger: ACCTCCTGACCTGCTCCCCCACGGAGGACGCCACAA...GCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCTGCGACTCCCCATTGTaGCGTCCTCCGTGGGGGAGC +
Preference number: 4 (lower is better)
Translates to: KNTCPGQATSWAIQSSGLCDSPL*RPPWGS
Trigger: GCTCCCCCACGGAGGACGCCACAATGGGGAGTCGCA...GAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTTCCCGATGCTGCAGTTaGACAAGGACTCGCTGCGAC +
Preference number: 4 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSSRCCS*TRTRCD
Trigger: GTCGCAGCGAGTCCTTGTCCAACTGCAGCATCGGGA...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGACTTCCGCCGGTGCTGTaGGTCACTGATGCCAATCTC +
Preference number: 4 (lower is better)
Translates to: VLDRPLLGPSRVPVSSARLPPVL*VTDANL
Trigger: GAGATTGGCATCAGTGACCCACAGCACCGGCGGAAG...TCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTCTGGCTCCTGGCATCTTAGCTaGGAAAACCTTGGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: QCSLGFAPTAEPTELTSGSWHLS*ENLGGF
Trigger: GAAGCCTCCAAGGTTTTCCCAGCTAAGATGCCAGGA...GCCAGAGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCTACAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTGTGCAGGAATCATTCTaGCTCAGCGGGGACGATGTC +
Preference number: 4 (lower is better)
Translates to: VYSVPWALRPLQSPLSSPVQESF*LSGDDV
Trigger: GACATCGTCCCCGCTGAGCCAGAATGATTCCTGCAC...AGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTGTAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACGACGGAGGGTCAGCTTaGTCTCACTGGGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: AVLMGTGEYSGVPHTRNYDGGSA*SHWAPP
Trigger: AGGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTC...GTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCAGGATTGACTTCCGCATTTTaGCACAGGCATCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: DWAWVFSVADEALGAGAGLTSAF*HRHLGW
Trigger: CCACCCAAGATGCCTGTGCCAAAATGCGGAAGTCAA...TCCTGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACTTGACTTCCGCATTTTaGCACAGGCATCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: PRIAAHNRCSGLASCPQDLTSAF*HRHLGW
Trigger: CCACCCAAGATGCCTGTGCCAAAATGCGGAAGTCAA...GTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCGGTACACAGGTCCTCTaGGTCCTGCGCGGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: KNTCPGQATSWAIQSSGLGTQVL*VLRGAG
Trigger: TCCTGCGCCGCGCAGGACCCAGAGGACCTGTGTACC...GAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAAAGGCCGCCATGGTCCTaGATTTCTGGGCTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: AFHSEQPQGGSAQDCSSQRPPWS*ISGLGG
Trigger: CCCTCCAAGCCCAGAAATCCAGGACCATGGCGGCCT...TTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACTTGCTTATCCCCGTTGACTCTGGTGTGTaGGGGCCCTTGCTGGATGAG +
Preference number: 4 (lower is better)
Translates to: GTGEYSGVPHTRNYLLIPVDSGV*GPLLDE
Trigger: CTCATCCAGCAAGGGCCCTCACACACCAGAGTCAAC...GGGGATAAGCAAGTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGATCTTCTGCTGCTCCTaGGAGAAGTCAATCCCTTCC +
Preference number: 4 (lower is better)
Translates to: RVPVSSARCLASSLPPGQIFCCS*EKSIPS
Trigger: GGAAGGGATTGACTTCTCTCAGGAGCAGCAGAAGAT...CTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTCAGCGTCCGAGAACCTaGGATCTTCTGCTGCTCCTG +
Preference number: 4 (lower is better)
Translates to: CEGRGCLRVSGPSQVLSCQRPRT*DLLLLL
Trigger: CAGGAGCAGCAGAAGATCTCAGGTTCTCGGACGCTG...ACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACCAGCGTCCGAGAACCTaGGATCTTCTGCTGCTCCTG +
Preference number: 4 (lower is better)
Translates to: AVLMGTGEYSGVPHTRNYQRPRT*DLLLLL
Trigger: CAGGAGCAGCAGAAGATCTCAGGTTCTCGGACGCTG...GTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GGGAAGGGGCTCGGCACAACTGAGCCAGGCACCAAGGGTCTCTCTGTGAGCCGAGAACTTTCAGGACATTaGCAAGCTCTAGCTCCCAGA +
Preference number: 4 (lower is better)
Translates to: GKGLGTTEPGTKGLSVSRELSGH*QALAPR
Trigger: TCTGGGAGCTAGAGCTTGTCAATGTCCTGAAAGTTC...TCGGCTCACAGAGAGACCCTTGGTGCCTGGCTCAGTTGTGCCGAGCCCCTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTGCTTGTGTCTGCTaGGGGCAGCAGCAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: QKHMSWTGHFLGHPEFRSPACVC*GQQQVC
Trigger: GCAGACCTGCTGCTGCCCTCAGCAGACACAAGCAGG...AGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGCGCAGGACTCAAAGATaGGCTTTTCTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: QRETLLSTLSSHKVAVPRRRTQR*AFLAGA
Trigger: AGCACCAGCCAGAAAAGCTCATCTTTGAGTCCTGCG...CCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCCTGGCTCCTTCCCAGAGAGGAGCTGTACCCAGCAGCTGCTGCACTGAATGCATCTGCAGGTCCTTGGTaGTGTACGCGAAGGTACACA +
Preference number: 4 (lower is better)
Translates to: PWLLPREELYPAAAALNASAGPW*CTRRYT
Trigger: TGTGTACCTTCGCGTACATCACCAAGGACCTGCAGA...TGCATTCAGTGCAGCAGCTGCTGGGTACAGCTCCTCTCTGGGAAGGAGCCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATTCTCGTACTTGGTGCTaGGGCTCCGCTTCGAGTCTG +
Preference number: 4 (lower is better)
Translates to: SWTGHFLGHPEFRSPLLDSRTWC*GSASSL
Trigger: CAGACTCGAAGCGGAGCCTCAGCACCAAGTACGAGA...ATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR GCA 90 bp CCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGTCGGCCCTCTCCACATaGTCAGCAGACTGGAGAGCG +
Preference number: 4 (lower is better)
Translates to: PWFHTSAKGRAFHVALVLSALST*SADWRA
Trigger: CGCTCTCCAGTCTGCTGAGCATGTGGAGAGGGCCGA...CAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCAGCGTGTGTTTCCGAGTaGTGCAGCTCAGGAGATTGG +
Preference number: 4 (lower is better)
Translates to: QTARRSTEGNPAFHSEQPACVSE*CSSGDW
Trigger: CCAATCTCCTGAGCTGCAGCACTCGGAAACACACGC...TGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTGCACCACATCGGTCTTaGCAAACAAAGCAGCCTCAT +
Preference number: 4 (lower is better)
Translates to: GPSRVPVSSARCLASSLPAPHRS*QTKQPH
Trigger: ATGAGGCTGCTTTGTTTGGCAAGACCGATGTGGTGC...AGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCGCAGCCAGCAGGATTTaGACCACATCGGTCTTGCCA +
Preference number: 4 (lower is better)
Translates to: FLGHPEFRSPLLDAWRLRAASRI*TTSVLP
Trigger: TGGCAAGACCGATGTGGTGCAAATCCTGCTGGCTGC...GCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCAGGCCCTCAGAGGCTaGCAAGGGAAAATACTTCTT +
Preference number: 4 (lower is better)
Translates to: GPSRVPVSSARCLASSLPQALRG*QGKILL
Trigger: AAGAAGTATTTTCCCTTGGCAGCCTCTGAGGGCCTG...AGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTTTCCCACATCTGGAACAGATGTGCCCAGCCTGCCACACAGGATACAACAGTCAACTGCTCTGGGACCTaGCCGTCCTGCCCCTCCACA +
Preference number: 4 (lower is better)
Translates to: LSHIWNRCAQPATQDTTVNCSGT*PSCPST
Trigger: TGTGGAGGGGCAGGACGGGCAGGTCCCAGAGCAGTT...GACTGTTGTATCCTGTGTGGCAGGCTGGGCACATCTGTTCCAGATGTGGGAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGCAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTCACTCCCCGACGCTCTaGTCCAGCGTCCGAGAACCT +
Preference number: 4 (lower is better)
Translates to: SSVKRRKCLPVTLEQSAAHSPTL*SSVREP
Trigger: AGGTTCTCGGACGCTGGAGCAGAGCGTCGGGGAGTG...AGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCTTGCTCTCGTACTGCTaGAGGCCAATCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: LDRPLLGPSRVPVSSARCLLSYC*RPIDSS
Trigger: GCTGGAGTCGATTGGCCTGCAGCAGTACGAGAGCAA...GCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACTTGCTTATCCCCCGTTCAGCAGCAGCTTaGTCTCGTACTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: GTGEYSGVPHTRNYLLIPRSAAA*SRTAAG
Trigger: GCCTGCAGCAGTACGAGAGCAAGCTGCTGCTGAACG...GGGGATAAGCAAGTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGATCTCCCTCAGGTCCTaGTCTTCCATCACATTAGAC +
Preference number: 4 (lower is better)
Translates to: GGSAQDCSSQPLFRPGLLISLRS*SSITLD
Trigger: GTCTAATGTGATGGAAGAGCAGGACCTGAGGGAGAT...CAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp ATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAGCCTGCCGACCGCCCTGTaGAGGAATCATTCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: MPQQSHFSLPTWLHWPSSLPTAL*RNHSGS
Trigger: TGAGCCAGAATGATTCCTGCACAGGGCGGTCGGCAG...GCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAGGTCCTCTGGGTCCTaGGCGGCGCAGGAAATGTTC +
Preference number: 4 (lower is better)
Translates to: SMPQQSHFSLPTWLHWPSRSSGS*AAQEMF
Trigger: GAACATTTCCTGCGCCGCGCAGGACCCAGAGGACCT...GCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGGTAGCTGGGCTGTaGAGGTCCTGTCCACTTCTT +
Preference number: 4 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSEVAGL*RSCPLL
Trigger: AAGAAGTGGACAGGACCTCCACAGCCCAGCTACCTC...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCACTCCTCTTCATCGGGTaGCGGTTTTGCTGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: QCPNKATSPFQHGSIGPALLFIG*RFCWRR
Trigger: CCGCCTCCAGCAAAACCGCCACCCGATGAAGAGGAG...TGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTTCTGCAAAGCAGGGTGGCTCCTCAGTGGCTCAGCTTGGCAGAAGCAAACAGTCTTTGGGCTTGCTGGTaGGAGGGGCTCTGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: LLQSRVAPQWLSLAEANSLWACW*EGLCFW
Trigger: CCAGAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAG...ACTGTTTGCTTCTGCCAAGCTGAGCCACTGAGGAGCCACCCTGCTTTGCAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR CCA 90 bp CTTTCCCACATCTGGAACAGATGTGCCCAGCCTGCCACACAGGATACAACAGTCTTGTGGCGTCCTCCGTaGGGGAGCAGGTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: LSHIWNRCAQPATQDTTVLWRPP*GSRSGG
Trigger: ACCTCCTGACCTGCTCCCCCACGGAGGACGCCACAA...GACTGTTGTATCCTGTGTGGCAGGCTGGGCACATCTGTTCCAGATGTGGGAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGTTGTGGCGTCCTCCGTaGGGGAGCAGGTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: QRQEEEVPACDFRTECSLLWRPP*GSRSGG
Trigger: ACCTCCTGACCTGCTCCCCCACGGAGGACGCCACAA...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCTCCCGATGCTGCAGTTaGACAAGGACTCGCTGCGAC +
Preference number: 4 (lower is better)
Translates to: SGTALVSHKRQRQSLPCGSRCCS*TRTRCD
Trigger: GTCGCAGCGAGTCCTTGTCCAACTGCAGCATCGGGA...GCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCTGGAGCTGTAGCCACTaGACAGGAAAGAGTGGACAT +
Preference number: 4 (lower is better)
Translates to: PQGGSAQDCSSQPLFRPGWSCSH*TGKSGH
Trigger: ATGTCCACTCTTTCCTGTCCAGTGGCTACAGCTCCA...GCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGTGGAGCTGTAGCCACTaGACAGGAAAGAGTGGACAT +
Preference number: 4 (lower is better)
Translates to: RIAAHNRCSGLASCPQDQWSCSH*TGKSGH
Trigger: ATGTCCACTCTTTCCTGTCCAGTGGCTACAGCTCCA...CTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGTGCAGGAATCATTCTaGCTCAGCGGGGACGATGTC +
Preference number: 4 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSVQESF*LSGDDV
Trigger: GACATCGTCCCCGCTGAGCCAGAATGATTCCTGCAC...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGTTGACTTCCGCATTTTaGCACAGGCATCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: RVPVSSARCLASSLPPGQLTSAF*HRHLGW
Trigger: CCACCCAAGATGCCTGTGCCAAAATGCGGAAGTCAA...CTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTTTGACTTCCGCATTTTaGCACAGGCATCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: GPSRVPVSSARCLASSLPLTSAF*HRHLGW
Trigger: CCACCCAAGATGCCTGTGCCAAAATGCGGAAGTCAA...AGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp ATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTTACCGAGAGGCCGGAGCCGGTACACAGGTCCTCTaGGTCCTGCGCGGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: ISGPVLFKDWQLYREAGAGTQVL*VLRGAG
Trigger: TCCTGCGCCGCGCAGGACCCAGAGGACCTGTGTACC...GGCTCCGGCCTCTCGGTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGAAGGAAGGACGGTGAGTaGTGCAGGTGTGACAGTGAC +
Preference number: 4 (lower is better)
Translates to: VLDRPLLGPSRVPVSSARRKDGE*CRCDSD
Trigger: GTCACTGTCACACCTGCACCACTCACCGTCCTTCCT...TCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000233309.2
CDS-3UTR TCA 90 bp TCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCGAGCATTCTGTTCGTTaGCTCTGGTGTGTGAGGGCC +
Preference number: 4 (lower is better)
Translates to: SGTALVSHKRQRQSLPCGEHSVR*LWCVRA
Trigger: GGCCCTCACACACCAGAGTCAACGAACAGAATGCTC...GCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000114842.9
CDS-3UTR TCA 90 bp AGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGCATGGTGGGGTCCGTaGGCTCCTCCAGCAGAGCCT +
Preference number: 4 (lower is better)
Translates to: RGCLRVSGPSQVLSCLKIAWWGP*APPAEP
Trigger: AGGCTCTGCTGGAGGAGCTCACGGACCCCACCATGC...AATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp ACCCCCTCCCGCAGCTGTCCTCAGCCCAAGGGGAGGATTCACAGTGTTGGGTGGGCATGTGTGTCAAAATaGAGGATCAGCTCAGTCACT +
Preference number: 4 (lower is better)
Translates to: TPSRSCPQPKGRIHSVGWACVSK*RISSVT
Trigger: AGTGACTGAGCTGATCCTTCATTTTGACACACATGC...CCACCCAACACTGTGAATCCTCCCCTTGGGCTGAGGACAGCTGCGGGAGGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR TCA 90 bp AAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTGCCATTCCTCTTGGTTTCTGCCGTaGGCAGCAGCTCATATGGGT +
Preference number: 4 (lower is better)
Translates to: KQGILWPLHEGLGTSCHSSWFLP*AAAHMG
Trigger: ACCCATATGAGCTGCTGCTCACGGCAGAAACCAAGA...GGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAACGGTGGCCCAGCAGGTaGACTTTCAGGACATTGACA +
Preference number: 4 (lower is better)
Translates to: AFHSEQPQGGSAQDCSSQRWPSR*TFRTLT
Trigger: TGTCAATGTCCTGAAAGTTCACCTGCTGGGCCACCG...TTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TCACTGCTCCTTAAGCCCAGGAGGTGGCTCTCCACCCAAGTCACTTTAAAAAGCCCTGCTTGTGTCTGCTaGGGGCAGCAGCAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: SLLLKPRRWLSTQVTLKSPACVC*GQQQVC
Trigger: GCAGACCTGCTGCTGCCCTCAGCAGACACAAGCAGG...GCTTTTTAAAGTGACTTGGGTGGAGAGCCACCTCCTGGGCTTAAGGAGCAGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAACCTGCTTGTGTCTGCTaGGGGCAGCAGCAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: WFHTSAKGRAFHVALVLKPACVC*GQQQVC
Trigger: GCAGACCTGCTGCTGCCCTCAGCAGACACAAGCAGG...TTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AAGCAAGGGATCCTGTGGCCACTGCATGAGGGACTGGGCACGTCTTGCCATTCCTCTGCAGGTCCTTGGTaGTGTACGCGAAGGTACACA +
Preference number: 4 (lower is better)
Translates to: KQGILWPLHEGLGTSCHSSAGPW*CTRRYT
Trigger: TGTGTACCTTCGCGTACATCACCAAGGACCTGCAGA...GGAATGGCAAGACGTGCCCAGTCCCTCATGCAGTGGCCACAGGATCCCTTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGGCCCCAGGGTCAGGATaGTCTCGTAGGTCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: HSLGFTQAPKAEPSMWHLAPGSG*SRRSGS
Trigger: TGAACCTGACCTACGAGATCATCCTGACCCTGGGGC...CAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCGTGTGTTTCCGAGTaGTGCAGCTCAGGAGATTGG +
Preference number: 4 (lower is better)
Translates to: SWTGHFLGHPEFRSPLLDACVSE*CSSGDW
Trigger: CCAATCTCCTGAGCTGCAGCACTCGGAAACACACGC...ATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCACCTCATGCAAAGCACTaGCCATCTCCGTCTGATAGT +
Preference number: 4 (lower is better)
Translates to: PSRVPVSSARCLASSLPPPHAKH*PSPSDS
Trigger: ACTATCAGACGGAGATGGGCAGTGCTTTGCATGAGG...TGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCGCAGCCAGCAGGATTTaGACCACATCGGTCTTGCCA +
Preference number: 4 (lower is better)
Translates to: SGTALVSHKRQRQSLPCGAASRI*TTSVLP
Trigger: TGGCAAGACCGATGTGGTGCAAATCCTGCTGGCTGC...GCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGCGGCCGCTGCCGCTCTaGCTGTGGTCTTCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPRPLPL*LWSSVL
Trigger: GAGGACTGAAGACCACAGGCAGAGCGGCAGCGGCCG...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGAGGAGACCTGAGAACTaGTCTGGGACCTGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: QRQEEEVPACDFRTECSLRRPEN*SGTCPS
Trigger: GGACGGGCAGGTCCCAGAGCAGTTCTCAGGTCTCCT...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCACATCGAGGTATGTTCTaGTGGCCAGGGCTGTCAGGC +
Preference number: 4 (lower is better)
Translates to: QCPNKATSPFQHGSIGPAHRGMF*WPGLSG
Trigger: GCCTGACAGCCCTGGCCAGCAGAACATACCTCGATG...TGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp ATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAGCTTGCTCTCGTACTGCTaGAGGCCAATCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: MPQQSHFSLPTWLHWPSSLLSYC*RPIDSS
Trigger: GCTGGAGTCGATTGGCCTGCAGCAGTACGAGAGCAA...GCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGCGTTCAGCAGCAGCTTaGTCTCGTACTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: HSLGFTQAPKAEPSMWHLRSAAA*SRTAAG
Trigger: GCCTGCAGCAGTACGAGAGCAAGCTGCTGCTGAACG...CAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGCAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTAGCAGCTTCCGCCGGTaGTGTGGGTCACTGATGCCA +
Preference number: 4 (lower is better)
Translates to: SSVKRRKCLPVTLEQSAASSFRR*CGSLMP
Trigger: TGGCATCAGTGACCCACAGCACCGGCGGAAGCTGCT...AGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCCTTGGGCAAGGAGCGTaGAGCCTGCAGCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: CLRVSGPSQVLSCLKIGSLGQGA*SLQQLP
Trigger: CGGAAGCTGCTGCAGGCTGCACGCTCCTTGCCCAAG...GCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGCAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGTCGTGCCGCCTCCTaGTTGTGTCTGCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: SSVKRRKCLPVTLEQSAACRAAS*LCLLRA
Trigger: TGCCCTCAGCAGACACAAGCAGGAGGCGGCACGACA...AGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGTCGGGCAGGCTGTCGTaGCGCCTCCTGCTTGTGTCT +
Preference number: 4 (lower is better)
Translates to: FHTSAKGRAFHVALVLKRSGRLS*RLLLVS
Trigger: AGACACAAGCAGGAGGCGGCACGACAGCCTGCCCGA...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTTTCCCACATCTGGAACAGATGTGCCCAGCCTGCCACACAGGATACAACAGTCCTGCCGCTCTGCCTGTaGTCTTCAGTCCTCCCGTCT +
Preference number: 4 (lower is better)
Translates to: LSHIWNRCAQPATQDTTVLPLCL*SSVLPS
Trigger: AGACGGGAGGACTGAAGACCACAGGCAGAGCGGCAG...GACTGTTGTATCCTGTGTGGCAGGCTGGGCACATCTGTTCCAGATGTGGGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGCGAGGTATGTTCTGCTaGCCAGGGCTGTCAGGCCTG +
Preference number: 4 (lower is better)
Translates to: QRQEEEVPACDFRTECSLRGMFC*PGLSGL
Trigger: CAGGCCTGACAGCCCTGGCCAGCAGAACATACCTCG...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGTCCTGGCATCTTAGCTaGGAAAACCTTGGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: QRETLLSTLSSHKVAVPRSWHLS*ENLGGF
Trigger: GAAGCCTCCAAGGTTTTCCCAGCTAAGATGCCAGGA...CCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGATTGCAGCTCACAAGTGCAGGAATCATTCTaGCTCAGCGGGGACGATGTC +
Preference number: 4 (lower is better)
Translates to: AFHSEQPQGGSAQDCSSQVQESF*LSGDDV
Trigger: GACATCGTCCCCGCTGAGCCAGAATGATTCCTGCAC...TTGTGAGCTGCAATCCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGGTGCAGGAATCATTCTaGCTCAGCGGGGACGATGTC +
Preference number: 4 (lower is better)
Translates to: GLQRETLLSTLSSHKVAVVQESF*LSGDDV
Trigger: GACATCGTCCCCGCTGAGCCAGAATGATTCCTGCAC...CACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCATCAGCTTGGTCTCACTaGGCTCCTCCTGGACTCGGA +
Preference number: 4 (lower is better)
Translates to: QCPNKATSPFQHGSIGPASAWSH*APPGLG
Trigger: TCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGA...TGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTGTACCCAGCAGCTGCTGCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTATTGACTTCCGCATTTTaGCACAGGCATCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: LYPAAAALNAAGRQPAGLLTSAF*HRHLGW
Trigger: CCACCCAAGATGCCTGTGCCAAAATGCGGAAGTCAA...TAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGCAGCAGCTGCTGGGTACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTACACAGGTCCTCTaGGTCCTGCGCGGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: LIKNTCPGQATSWAIQSSGTQVL*VLRGAG
Trigger: TCCTGCGCCGCGCAGGACCCAGAGGACCTGTGTACC...GGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCACCGAGGCTTAGGCACTaGTTTGGAGGATTTTGTCTC +
Preference number: 4 (lower is better)
Translates to: PSRVPVSSARCLASSLPPPRLRH*FGGFCL
Trigger: GAGACAAAATCCTCCAAACCAGTGCCTAAGCCTCGG...TGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCTGCGGCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAGCATGTGTGTCAAAATaGAGGATCAGCTCAGTCACT +
Preference number: 4 (lower is better)
Translates to: PAAVLMGTGEYSGVPHTRACVSK*RISSVT
Trigger: AGTGACTGAGCTGATCCTTCATTTTGACACACATGC...TCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGCCGCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTGCCCAGGGAACTTTCAGGACATTaGCAAGCTCTAGCTCCCAGA +
Preference number: 4 (lower is better)
Translates to: QRETLLSTLSSHKVAVPRELSGH*QALAPR
Trigger: TCTGGGAGCTAGAGCTTGTCAATGTCCTGAAAGTTC...CCTGGGCACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGCCTGCTTGTGTCTGCTaGGGGCAGCAGCAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPPACVC*GQQQVC
Trigger: GCAGACCTGCTGCTGCCCTCAGCAGACACAAGCAGG...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCTCTCGTGCTCCGCAATaGCGTTCTTGTTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: LDRPLLGPSRVPVSSARCSRAPQ*RSCWKH
Trigger: ATGCTTCCAACAAGAACGTCATTGCGGAGCACGAGA...GCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCATCTCGTGCTCCGCAATaGCGTTCTTGTTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: QTARRSTEGNPAFHSEQPSRAPQ*RSCWKH
Trigger: ATGCTTCCAACAAGAACGTCATTGCGGAGCACGAGA...TGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GCAGTGCTAATGGGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACTCTGCAGGTCCTTGGTaGTGTACGCGAAGGTACACA +
Preference number: 4 (lower is better)
Translates to: AVLMGTGEYSGVPHTRNYSAGPW*CTRRYT
Trigger: TGTGTACCTTCGCGTACATCACCAAGGACCTGCAGA...GTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCCCATTAGCACTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTGCCCCAGGGTCAGGATaGTCTCGTAGGTCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: QKHMSWTGHFLGHPEFRSAPGSG*SRRSGS
Trigger: TGAACCTGACCTACGAGATCATCCTGACCCTGGGGC...AGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGTCTCCTTTCCACGCTaGCAAGTGCAGCGGGTAGCA +
Preference number: 4 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKVSFPR*QVQRVA
Trigger: TGCTACCCGCTGCACTTGGCAGCGTGGAAAGGAGAC...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGATCGTGGCAGGCGTCCTaGTGGGAGGACTCCGGGTGG +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRSWQAS*WEDSGW
Trigger: CCACCCGGAGTCCTCCCAGCAGGACGCCTGCCACGA...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGCTCAGCTTTGGGCTTaGTGGTGGGAGGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPAQLWA*WWEGLC
Trigger: GCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTGAGC...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCCACTCCCCGACGCTCTaGTCCAGCGTCCGAGAACCT +
Preference number: 4 (lower is better)
Translates to: LIKNTCPGQATSWAIQSSHSPTL*SSVREP
Trigger: AGGTTCTCGGACGCTGGAGCAGAGCGTCGGGGAGTG...GGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGAGCTTGCTCTCGTACTaGTGCAGGCCAATCGACTCC +
Preference number: 4 (lower is better)
Translates to: HSLGFTQAPKAEPSMWHLSLLSY*CRPIDS
Trigger: GGAGTCGATTGGCCTGCAGCAGTACGAGAGCAAGCT...CAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GCACTGAATGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTATGTTCCGGATCTCGTaGTCCGCAATGACGTTCTTG +
Preference number: 4 (lower is better)
Translates to: ALNAAGRQPAGLQRETLLMFRIS*SAMTFL
Trigger: CAAGAACGTCATTGCGGAGCACGAGATCCGGAACAT...AAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCATTCAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCAATGTTCCGGATCTCGTaGTCCGCAATGACGTTCTTG +
Preference number: 4 (lower is better)
Translates to: QTARRSTEGNPAFHSEQPMFRIS*SAMTFL
Trigger: CAAGAACGTCATTGCGGAGCACGAGATCCGGAACAT...TGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGAGACTGGAGAGCGGGTaGCTAGAAGAACCGAGGCCG +
Preference number: 4 (lower is better)
Translates to: FHTSAKGRAFHVALVLKRRLESG*LEEPRP
Trigger: CGGCCTCGGTTCTTCTAGCCACCCGCTCTCCAGTCT...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCACTATACTGTCTGCACCACGGCCACGGGGATCACTTCTGTCTCCTGCCATCAGCAGACGTACTATCTaGGCGTCTCCTTTCCACGCT +
Preference number: 4 (lower is better)
Translates to: CTILSAPRPRGSLLSPAISRRTI*ASPFHA
Trigger: AGCGTGGAAAGGAGACGCCCAGATAGTACGTCTGCT...GATGGCAGGAGACAGAAGTGATCCCCGTGGCCGTGGTGCAGACAGTATAGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR CCA 90 bp TGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTAGCAGACGTACTATCTaGGCGTCTCCTTTCCACGCT +
Preference number: 4 (lower is better)
Translates to: CEGRGCLRVSGPSQVLSCSRRTI*ASPFHA
Trigger: AGCGTGGAAAGGAGACGCCCAGATAGTACGTCTGCT...ACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATAGCAGACGTACTATCTaGGCGTCTCCTTTCCACGCT +
Preference number: 4 (lower is better)
Translates to: SWTGHFLGHPEFRSPLLDSRRTI*ASPFHA
Trigger: AGCGTGGAAAGGAGACGCCCAGATAGTACGTCTGCT...ATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGGAGGGGCTCTGCTTCTaGGCCCGCTCTGGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: FHTSAKGRAFHVALVLKREGLCF*ARSGLL
Trigger: AAGAAGACCAGAGCGGGCCCAGAAGCAGAGCCCCTC...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAACTTTGGGCTTGCTGGTaGGAGGGGCTCTGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: WFHTSAKGRAFHVALVLKLWACW*EGLCFW
Trigger: CCAGAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAG...TTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGCAGCTTTGGGCTTGCTaGTGGGAGGGGCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: FHTSAKGRAFHVALVLKRQLWAC*WEGLCF
Trigger: GAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTG...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGTCCCGATGCTGCAGTTaGACAAGGACTCGCTGCGAC +
Preference number: 4 (lower is better)
Translates to: QRQEEEVPACDFRTECSLSRCCS*TRTRCD
Trigger: GTCGCAGCGAGTCCTTGTCCAACTGCAGCATCGGGA...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATCCTGGCATCTTAGCTaGGAAAACCTTGGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: VLDRPLLGPSRVPVSSARSWHLS*ENLGGF
Trigger: GAAGCCTCCAAGGTTTTCCCAGCTAAGATGCCAGGA...TCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAGGACTGGGCCTGGGTCTTCAGTGTTGCAGATGAGGCTCTCGGGGCTGGGGCATGGGAGATTAAATCCTaGCATCTTAGCTGGGAAAAC +
Preference number: 4 (lower is better)
Translates to: QDWAWVFSVADEALGAGAWEIKS*HLSWEN
Trigger: GTTTTCCCAGCTAAGATGCCAGGATTTAATCTCCCA...TGCCCCAGCCCCGAGAGCCTCATCTGCAACACTGAAGACCCAGGCCCAGTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCGTGCAGGAATCATTCTaGCTCAGCGGGGACGATGTC +
Preference number: 4 (lower is better)
Translates to: SMPQQSHFSLPTWLHWPSVQESF*LSGDDV
Trigger: GACATCGTCCCCGCTGAGCCAGAATGATTCCTGCAC...GCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCTCAGCTTGGTCTCACTaGGCTCCTCCTGGACTCGGA +
Preference number: 4 (lower is better)
Translates to: KNTCPGQATSWAIQSSGLSAWSH*APPGLG
Trigger: TCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGA...GAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGAAAAGATGAGCTTTTCTaGCTGGTGCTGCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: VLDRPLLGPSRVPVSSARKDELF*LVLPAL
Trigger: CAGAGCTGGCAGCACCAGCCAGAAAAGCTCATCTTT...TCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGAAAGATGAGCTTTTCTaGCTGGTGCTGCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SRQTARRSTEGNPAFHSEKDELF*LVLPAL
Trigger: CAGAGCTGGCAGCACCAGCCAGAAAAGCTCATCTTT...CTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp ATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTTACCGAGAGGCCGGAGCCAGGCCGCCATGGTCCTaGATTTCTGGGCTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: ISGPVLFKDWQLYREAGARPPWS*ISGLGG
Trigger: CCCTCCAAGCCCAGAAATCCAGGACCATGGCGGCCT...GGCTCCGGCCTCTCGGTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCAGGCCGCCATGGTCCTaGATTTCTGGGCTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: CLRVSGPSQVLSCLKIGSRPPWS*ISGLGG
Trigger: CCCTCCAAGCCCAGAAATCCAGGACCATGGCGGCCT...GCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AGAGCCCATTGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCGTTGTTCTTGGCATTaGTATAAGGGTCAAAGGGGC +
Preference number: 4 (lower is better)
Translates to: RAHCEGRGCLRVSGPSQVRCSWH*YKGQRG
Trigger: GCCCCTTTGACCCTTATATCAATGCCAAGAACAACG...GACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACAATGGGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000114842.9
CDS-3UTR TCA 90 bp TCACTGCTCCTTAAGCCCAGGAGGTGGCTCTCCACCCAAGTCACTTTAAAAAGCTGGGGAGCACTACTCTaGATCCTGGGTCTCACAGCC +
Preference number: 4 (lower is better)
Translates to: SLLLKPRRWLSTQVTLKSWGALL*ILGLTA
Trigger: GGCTGTGAGACCCAGGATTCAGAGTAGTGCTCCCCA...GCTTTTTAAAGTGACTTGGGTGGAGAGCCACCTCCTGGGCTTAAGGAGCAGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp ACTTCTGCAAAGCAGGGTGGCTCCTCAGTGGCTCAGCTTGGCAGAAGCAAACAGTCTTGGTTTCTGCCGTaGGCAGCAGCTCATATGGGT +
Preference number: 4 (lower is better)
Translates to: TSAKQGGSSVAQLGRSKQSWFLP*AAAHMG
Trigger: ACCCATATGAGCTGCTGCTCACGGCAGAAACCAAGA...CTGTTTGCTTCTGCCAAGCTGAGCCACTGAGGAGCCACCCTGCTTTGCAGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR TCA 90 bp GAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTTACGCCGTGGAGGAGACCTaGGAACTGCTCTGGGACCTG +
Preference number: 4 (lower is better)
Translates to: EGFRPISGPVLFKDWQLYAVEET*ELLWDL
Trigger: CAGGTCCCAGAGCAGTTCTCAGGTCTCCTCCACGGC...GTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCCCCCAATGGAGCTCATaGTTTTCTCAATCTCATCCC +
Preference number: 4 (lower is better)
Translates to: FLGHPEFRSPLLDAWRLRPQWSS*FSQSHP
Trigger: GGGATGAGATTGAGAAAATCATGAGCTCCATTGGGG...GCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TCACTGCTCCTTAAGCCCAGGAGGTGGCTCTCCACCCAAGTCACTTTAAAAAGCCAGCGTCCGAGAACCTaGGATCTTCTGCTGCTCCTG +
Preference number: 4 (lower is better)
Translates to: SLLLKPRRWLSTQVTLKSQRPRT*DLLLLL
Trigger: CAGGAGCAGCAGAAGATCTCAGGTTCTCGGACGCTG...GCTTTTTAAAGTGACTTGGGTGGAGAGCCACCTCCTGGGCTTAAGGAGCAGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TGCAGCAGGCAGACAGCCCGCAGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAACTTTCAGGACATTaGCAAGCTCTAGCTCCCAGA +
Preference number: 4 (lower is better)
Translates to: CSRQTARRSTEGNPAFHSELSGH*QALAPR
Trigger: TCTGGGAGCTAGAGCTTGTCAATGTCCTGAAAGTTC...AGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCTGCGGGCTGTCTGCCTGCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CTTTCCCACATCTGGAACAGATGTGCCCAGCCTGCCACACAGGATACAACAGTCCGGTGGCCCAGCAGGTaGACTTTCAGGACATTGACA +
Preference number: 4 (lower is better)
Translates to: LSHIWNRCAQPATQDTTVRWPSR*TFRTLT
Trigger: TGTCAATGTCCTGAAAGTTCACCTGCTGGGCCACCG...GACTGTTGTATCCTGTGTGGCAGGCTGGGCACATCTGTTCCAGATGTGGGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTCCCTCGCAGATCTTTaGTCAGCATGGAACCCAGAT +
Preference number: 4 (lower is better)
Translates to: CEGRGCLRVSGPSQVLSCSLADL*SAWNPD
Trigger: ATCTGGGTTCCATGCTGATCAAAGATCTGCGAGGGA...ACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTCTCGTGCTCCGCAATaGCGTTCTTGTTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: CEGRGCLRVSGPSQVLSCSRAPQ*RSCWKH
Trigger: ATGCTTCCAACAAGAACGTCATTGCGGAGCACGAGA...ACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp ATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAGCTCTCGTGCTCCGCAATaGCGTTCTTGTTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: MPQQSHFSLPTWLHWPSSSRAPQ*RSCWKH
Trigger: ATGCTTCCAACAAGAACGTCATTGCGGAGCACGAGA...GCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGGCCCCAGGGTCAGGATaGTCTCGTAGGTCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: FHTSAKGRAFHVALVLKRAPGSG*SRRSGS
Trigger: TGAACCTGACCTACGAGATCATCCTGACCCTGGGGC...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AGCAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTCGTTGTTCTGTTCGTTaGCTCTGGTGTGTGAGGGCC +
Preference number: 4 (lower is better)
Translates to: SSVKRRKCLPVTLEQSAARCSVR*LWCVRA
Trigger: GGCCCTCACACACCAGAGTCAACGAACAGAACAACG...AGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088027.7
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCGCGTGTGTTTCCGAGTaGTGCAGCTCAGGAGATTGG +
Preference number: 4 (lower is better)
Translates to: KNTCPGQATSWAIQSSGLACVSE*CSSGDW
Trigger: CCAATCTCCTGAGCTGCAGCACTCGGAAACACACGC...GAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGTGAAGGCAGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTGCACCACATCGGTCTTaGCAAACAAAGCAGCCTCAT +
Preference number: 4 (lower is better)
Translates to: CEGRGCLRVSGPSQVLSCAPHRS*QTKQPH
Trigger: ATGAGGCTGCTTTGTTTGGCAAGACCGATGTGGTGC...ACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCTGCCTTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGGCAGCCAGCAGGATTTaGACCACATCGGTCTTGCCA +
Preference number: 4 (lower is better)
Translates to: QRQEEEVPACDFRTECSLAASRI*TTSVLP
Trigger: TGGCAAGACCGATGTGGTGCAAATCCTGCTGGCTGC...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAAGCAGCTCATATGGGTaGTCCTCCTCTTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKSSSYG*SSSSWG
Trigger: TCCCCAGGAAGAGGAGGAGCACCCATATGAGCTGCT...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTTTCCCACATCTGGAACAGATGTGCCCAGCCTGCCACACAGGATACAACAGTCAGCAGCTCATATGGGTaGTCCTCCTCTTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: LSHIWNRCAQPATQDTTVSSSYG*SSSSWG
Trigger: TCCCCAGGAAGAGGAGGAGCACCCATATGAGCTGCT...GACTGTTGTATCCTGTGTGGCAGGCTGGGCACATCTGTTCCAGATGTGGGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCAGCAGCTCATATGGGTaGTCCTCCTCTTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: KNTCPGQATSWAIQSSGLSSSYG*SSSSWG
Trigger: TCCCCAGGAAGAGGAGGAGCACCCATATGAGCTGCT...GAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACTTGCTTATCCCCCAGCTTCTTGGTTTCTaGCGTGAGCAGCAGCTCATA +
Preference number: 4 (lower is better)
Translates to: GTGEYSGVPHTRNYLLIPQLLGF*REQQLI
Trigger: TATGAGCTGCTGCTCACGGCAGAAACCAAGAAGCTG...GGGGATAAGCAAGTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGATTATGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCAGGGACCTGCCCGTCCTaGCCCTCCACAGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: GLCFLSKTHVLDRPLLGPGTCPS*PSTESW
Trigger: CCAGGACTCTGTGGAGGGGCAGGACGGGCAGGTCCC...TGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACATAATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCCGTTCAGCAGCAGCTTaGTCTCGTACTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: CLRVSGPSQVLSCLKIGSRSAAA*SRTAAG
Trigger: GCCTGCAGCAGTACGAGAGCAAGCTGCTGCTGAACG...GCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGAGCAGCTTCCGCCGGTaGTGTGGGTCACTGATGCCA +
Preference number: 4 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPSSFRR*CGSLMP
Trigger: TGGCATCAGTGACCCACAGCACCGGCGGAAGCTGCT...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGAGTGCAGCTTGAACTCATCGTAGTGTCTACAGTGTTCCCTGGGCTTTGCGCCATAGGCCACCTCAAATaGCTGCCCCAGGGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: RVQLELIVVSTVFPGLCAIGHLK*LPQGQD
Trigger: ATCCTGACCCTGGGGCAGGCATTTGAGGTGGCCTAT...GGCGCAAAGCCCAGGGAACACTGTAGACACTACGATGAGTTCAAGCTGCACTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTTTCCCACATCTGGAACAGATGTGCCCAGCCTGCCACACAGGATACAACAGTCATAGGCCACCTCAAATaGCTGCCCCAGGGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: LSHIWNRCAQPATQDTTVIGHLK*LPQGQD
Trigger: ATCCTGACCCTGGGGCAGGCATTTGAGGTGGCCTAT...GACTGTTGTATCCTGTGTGGCAGGCTGGGCACATCTGTTCCAGATGTGGGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TTCAGCTTAGAACGCTCAGGTCACACTTTATCGCTGAGGGAAGTCAAGGCAGGAAGACTGGAGAGCGGGTaGCTAGAAGAACCGAGGCCG +
Preference number: 4 (lower is better)
Translates to: FSLERSGHTLSLREVKAGRLESG*LEEPRP
Trigger: CGGCCTCGGTTCTTCTAGCCACCCGCTCTCCAGTCT...TCCTGCCTTGACTTCCCTCAGCGATAAAGTGTGACCTGAGCGTTCTAAGCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
CDS-3UTR CCA 90 bp CAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAAGCAGACGTACTATCTaGGCGTCTCCTTTCCACGCT +
Preference number: 4 (lower is better)
Translates to: QCPNKATSPFQHGSIGPASRRTI*ASPFHA
Trigger: AGCGTGGAAAGGAGACGCCCAGATAGTACGTCTGCT...TGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCTGTGAGGGCCCTTGCTaGATGAGCAGACGTACTATC +
Preference number: 4 (lower is better)
Translates to: SMPQQSHFSLPTWLHWPSCEGPC*MSRRTI
Trigger: GATAGTACGTCTGCTCATCCAGCAAGGGCCCTCACA...GCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTGCAGCTCAGGAGATTaGGGTGTGCACCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: CLRVSGPSQVLSCLKIGSCSSGD*GVHPAA
Trigger: TGCTGCTGGGTGCACACCCCAATCTCCTGAGCTGCA...GCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCACTGCTCCTTAAGCCCAGGAGGTGGCTCTCCACCCAAGTCACTTTAAAAAGCTGCACCACGGCCTTGTaGCCATTCCTTGCTGCCAAG +
Preference number: 4 (lower is better)
Translates to: SLLLKPRRWLSTQVTLKSCTTAL*PFLAAK
Trigger: CTTGGCAGCAAGGAATGGCCACAAGGCCGTGGTGCA...GCTTTTTAAAGTGACTTGGGTGGAGAGCCACCTCCTGGGCTTAAGGAGCAGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCTTGATGATTGCAGCCATGTGTTCTGAGTGCTCAAACCCAAGGTTTCTCAGAGGGTGGCGGTTTTGCTaGAGGCGGCGGACGTTCCCT +
Preference number: 4 (lower is better)
Translates to: VLMIAAMCSECSNPRFLRGWRFC*RRRTFP
Trigger: AGGGAACGTCCGCCGCCTCCAGCAAAACCGCCACCC...TCTGAGAAACCTTGGGTTTGAGCACTCAGAACACATGGCTGCAATCATCAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCCGAGGTATGTTCTGCTaGCCAGGGCTGTCAGGCCTG +
Preference number: 4 (lower is better)
Translates to: LIKNTCPGQATSWAIQSSRGMFC*PGLSGL
Trigger: CAGGCCTGACAGCCCTGGCCAGCAGAACATACCTCG...GGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCACTGCTCCTTAAGCCCAGGAGGTGGCTCTCCACCCAAGTCACTTTAAAAAGCCTTCCGCCGGTGCTGTaGGTCACTGATGCCAATCTC +
Preference number: 4 (lower is better)
Translates to: SLLLKPRRWLSTQVTLKSLPPVL*VTDANL
Trigger: GAGATTGGCATCAGTGACCCACAGCACCGGCGGAAG...GCTTTTTAAAGTGACTTGGGTGGAGAGCCACCTCCTGGGCTTAAGGAGCAGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGGACAGGTGAGTACTCCGGAGTCCCCCACACCAGAAACTACTTGCTTATCCCCTCCTGGCATCTTAGCTaGGAAAACCTTGGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: GTGEYSGVPHTRNYLLIPSWHLS*ENLGGF
Trigger: GAAGCCTCCAAGGTTTTCCCAGCTAAGATGCCAGGA...GGGGATAAGCAAGTAGTTTCTGGTGTGGGGGACTCCGGAGTACTCACCTGTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGCCTCCAGGGCAGTGGGAGATTAAATCCTaGCATCTTAGCTGGGAAAAC +
Preference number: 4 (lower is better)
Translates to: RVPVSSARCLASSLPPGQWEIKS*HLSWEN
Trigger: GTTTTCCCAGCTAAGATGCCAGGATTTAATCTCCCA...CTGCCCTGGAGGCAGCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp ATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCAGCAAAGATGAGCTTTTCTaGCTGGTGCTGCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: MPQQSHFSLPTWLHWPSSKDELF*LVLPAL
Trigger: CAGAGCTGGCAGCACCAGCCAGAAAAGCTCATCTTT...GCTGCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTGGCACAGGCATCTTaGGTGGACTCTGTCCCTCGC +
Preference number: 4 (lower is better)
Translates to: CLRVSGPSQVLSCLKIGSLAQAS*VDSVPR
Trigger: GCGAGGGACAGAGTCCACCCAAGATGCCTGTGCCAA...GCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGGTACACAGGTCCTCTaGGTCCTGCGCGGCGCAGGA +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRGTQVL*VLRGAG
Trigger: TCCTGCGCCGCGCAGGACCCAGAGGACCTGTGTACC...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCCCGAGGCTTAGGCACTaGTTTGGAGGATTTTGTCTC +
Preference number: 4 (lower is better)
Translates to: SGTALVSHKRQRQSLPCGPRLRH*FGGFCL
Trigger: GAGACAAAATCCTCCAAACCAGTGCCTAAGCCTCGG...GCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCAGGAAGGACGGTGAGTaGTGCAGGTGTGACAGTGAC +
Preference number: 4 (lower is better)
Translates to: KNTCPGQATSWAIQSSGLRKDGE*CRCDSD
Trigger: GTCACTGTCACACCTGCACCACTCACCGTCCTTCCT...GAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000233309.2
3UTR CAA 72 bp CTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTaGTTTAAAGATTGGCAGCTTTACCGAGAGGCCGGA +
Preference number: 4 (lower is better)
Translates to: LPEGFRPISGPV*FKDWQLYREAG
Trigger: TCCGGCCTCTCGGTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCGCATGTGTGTCAAAATaGAGGATCAGCTCAGTCACT +
Preference number: 4 (lower is better)
Translates to: FLGHPEFRSPLLDAWRLRACVSK*RISSVT
Trigger: AGTGACTGAGCTGATCCTTCATTTTGACACACATGC...GCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCTGGGGAGCACTACTCTaGATCCTGGGTCTCACAGCC +
Preference number: 4 (lower is better)
Translates to: LIKNTCPGQATSWAIQSSWGALL*ILGLTA
Trigger: GGCTGTGAGACCCAGGATTCAGAGTAGTGCTCCCCA...GGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp ATGCACAAGGGCATGGCTGGTACCAACCTTCCCCCTACAGAAAGTCTGTCCCTGATCTTCTGCTGCTCCTaGGAGAAGTCAATCCCTTCC +
Preference number: 4 (lower is better)
Translates to: MHKGMAGTNLPPTESLSLIFCCS*EKSIPS
Trigger: GGAAGGGATTGACTTCTCTCAGGAGCAGCAGAAGAT...CAGGGACAGACTTTCTGTAGGGGGAAGGTTGGTACCAGCCATGCCCTTGTGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR TCA 90 bp CTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTGCTGTGGGTCACTaGTGCCAATCTCCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: LIKNTCPGQATSWAIQSSGAVGH*CQSPSG
Trigger: ACCTGAGGGAGATTGGCATCAGTGACCCACAGCACC...GGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp ATGCACAAGGGCATGGCTGGTACCAACCTTCCCCCTACAGAAAGTCTGTCCCTGTCCCTCGCAGATCTTTaGTCAGCATGGAACCCAGAT +
Preference number: 4 (lower is better)
Translates to: MHKGMAGTNLPPTESLSLSLADL*SAWNPD
Trigger: ATCTGGGTTCCATGCTGATCAAAGATCTGCGAGGGA...CAGGGACAGACTTTCTGTAGGGGGAAGGTTGGTACCAGCCATGCCCTTGTGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR TCA 90 bp AGGTCTACAGAGGGAAACCCTGCTTTCCACTCTGAGCAGCCACAAGGTGGCAGTTCCCTCGCAGATCTTTaGTCAGCATGGAACCCAGAT +
Preference number: 4 (lower is better)
Translates to: RSTEGNPAFHSEQPQGGSSLADL*SAWNPD
Trigger: ATCTGGGTTCCATGCTGATCAAAGATCTGCGAGGGA...ACTGCCACCTTGTGGCTGCTCAGAGTGGAAAGCAGGGTTTCCCTCTGTAGACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGTCTGCAGGTCCTTGGTaGTGTACGCGAAGGTACACA +
Preference number: 4 (lower is better)
Translates to: QRQEEEVPACDFRTECSLSAGPW*CTRRYT
Trigger: TGTGTACCTTCGCGTACATCACCAAGGACCTGCAGA...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGGCGTTGTTCTGTTCGTTaGCTCTGGTGTGTGAGGGCC +
Preference number: 4 (lower is better)
Translates to: FHTSAKGRAFHVALVLKRRCSVR*LWCVRA
Trigger: GGCCCTCACACACCAGAGTCAACGAACAGAACAACG...CCTTTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088027.7
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp ATGCACAAGGGCATGGCTGGTACCAACCTTCCCCCTACAGAAAGTCTGTCCCTGGCACCACATCGGTCTTaGCAAACAAAGCAGCCTCAT +
Preference number: 4 (lower is better)
Translates to: MHKGMAGTNLPPTESLSLAPHRS*QTKQPH
Trigger: ATGAGGCTGCTTTGTTTGGCAAGACCGATGTGGTGC...CAGGGACAGACTTTCTGTAGGGGGAAGGTTGGTACCAGCCATGCCCTTGTGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR GCA 90 bp CCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGGCACCACATCGGTCTTaGCAAACAAAGCAGCCTCAT +
Preference number: 4 (lower is better)
Translates to: PWFHTSAKGRAFHVALVLAPHRS*QTKQPH
Trigger: ATGAGGCTGCTTTGTTTGGCAAGACCGATGTGGTGC...CAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGCAGGCCCTCAGAGGCTaGCAAGGGAAAATACTTCTT +
Preference number: 4 (lower is better)
Translates to: PWFHTSAKGRAFHVALVLQALRG*QGKILL
Trigger: AAGAAGTATTTTCCCTTGGCAGCCTCTGAGGGCCTG...CAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAAACTGCTCTGGGACCTaGCCGTCCTGCCCCTCCACA +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRNCSGT*PSCPST
Trigger: TGTGGAGGGGCAGGACGGGCAGGTCCCAGAGCAGTT...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTCATCGAGGTATGTTCTaGTGGCCAGGGCTGTCAGGC +
Preference number: 4 (lower is better)
Translates to: RGCLRVSGPSQVLSCLKIHRGMF*WPGLSG
Trigger: GCCTGACAGCCCTGGCCAGCAGAACATACCTCGATG...AATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGACACTCCCCGACGCTCTaGTCCAGCGTCCGAGAACCT +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRHSPTL*SSVREP
Trigger: AGGTTCTCGGACGCTGGAGCAGAGCGTCGGGGAGTG...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAAAGCTTGCTCTCGTACTaGTGCAGGCCAATCGACTCC +
Preference number: 4 (lower is better)
Translates to: WFHTSAKGRAFHVALVLKSLLSY*CRPIDS
Trigger: GGAGTCGATTGGCCTGCAGCAGTACGAGAGCAAGCT...TTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATATCTCCCTCAGGTCCTaGTCTTCCATCACATTAGAC +
Preference number: 4 (lower is better)
Translates to: SWTGHFLGHPEFRSPLLDISLRS*SSITLD
Trigger: GTCTAATGTGATGGAAGAGCAGGACCTGAGGGAGAT...ATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGGAGAGACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCAGCTTTGGGCTTGCTaGTGGGAGGGGCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: RRDPPGGGEEFLDYSETNQLWAC*WEGLCF
Trigger: GAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTG...ATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTCTCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGATTATGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATGCGACTCCCCATTGTaGCGTCCTCCGTGGGGGAGC +
Preference number: 4 (lower is better)
Translates to: GLCFLSKTHVLDRPLLGPCDSPL*RPPWGS
Trigger: GCTCCCCCACGGAGGACGCCACAATGGGGAGTCGCA...TGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACATAATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGCCGAGGCTTAGGCACTaGTTTGGAGGATTTTGTCTC +
Preference number: 4 (lower is better)
Translates to: PWFHTSAKGRAFHVALVLPRLRH*FGGFCL
Trigger: GAGACAAAATCCTCCAAACCAGTGCCTAAGCCTCGG...CAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp ATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTTACCGAGAGGCCGGAGCCTTCTCCATACTCCCCTaGGACATTGGTGCTATGGCG +
Preference number: 4 (lower is better)
Translates to: ISGPVLFKDWQLYREAGAFSILP*DIGAMA
Trigger: CGCCATAGCACCAATGTCTCAGGGGAGTATGGAGAA...GGCTCCGGCCTCTCGGTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AGAGTGCAGCTTGAACTCATCGTAGTGTCTACAGTGTTCCCTGGGCTTTGCGCCATCTTCTGCTGCTCCTaGGAGAAGTCAATCCCTTCC +
Preference number: 4 (lower is better)
Translates to: RVQLELIVVSTVFPGLCAIFCCS*EKSIPS
Trigger: GGAAGGGATTGACTTCTCTCAGGAGCAGCAGAAGAT...GGCGCAAAGCCCAGGGAACACTGTAGACACTACGATGAGTTCAAGCTGCACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGTCTCGTGCTCCGCAATaGCGTTCTTGTTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: QRQEEEVPACDFRTECSLSRAPQ*RSCWKH
Trigger: ATGCTTCCAACAAGAACGTCATTGCGGAGCACGAGA...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCAACAAAGCAGCCTCATaGAAAGCACTGCCCATCTCC +
Preference number: 4 (lower is better)
Translates to: KNTCPGQATSWAIQSSGLNKAAS*KALPIS
Trigger: GGAGATGGGCAGTGCTTTGCATGAGGCTGCTTTGTT...GAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TATCAGAGCCAACTCATGCACAAGGGCATGGCTGGTACCAACCTTCCCCCTACACAGCTTCTTGGTTTCTaGCGTGAGCAGCAGCTCATA +
Preference number: 4 (lower is better)
Translates to: YQSQLMHKGMAGTNLPPTQLLGF*REQQLI
Trigger: TATGAGCTGCTGCTCACGGCAGAAACCAAGAAGCTG...TGTAGGGGGAAGGTTGGTACCAGCCATGCCCTTGTGCATGAGTTGGCTCTGATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
CDS-3UTR GCA 90 bp CCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGAGGAGACCTGAGAACTaGTCTGGGACCTGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: PEEERNFLTIQKPILKGTRRPEN*SGTCPS
Trigger: GGACGGGCAGGTCCCAGAGCAGTTCTCAGGTCTCCT...CGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGTTGCTCTCGTACTGCTaGAGGCCAATCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPLLSYC*RPIDSS
Trigger: GCTGGAGTCGATTGGCCTGCAGCAGTACGAGAGCAA...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGGAGAGACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCGTTCAGCAGCAGCTTaGTCTCGTACTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: RRDPPGGGEEFLDYSETNRSAAA*SRTAAG
Trigger: GCCTGCAGCAGTACGAGAGCAAGCTGCTGCTGAACG...ATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTCTCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGATCTCCCTCAGGTCCTaGTCTTCCATCACATTAGAC +
Preference number: 4 (lower is better)
Translates to: HSLGFTQAPKAEPSMWHLISLRS*SSITLD
Trigger: GTCTAATGTGATGGAAGAGCAGGACCTGAGGGAGAT...CAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGAGCAGCTTCCGCCGGTaGTGTGGGTCACTGATGCCA +
Preference number: 4 (lower is better)
Translates to: PEEERNFLTIQKPILKGTSSFRR*CGSLMP
Trigger: TGGCATCAGTGACCCACAGCACCGGCGGAAGCTGCT...CGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGCAGAGCAGACAAGCCAAGGAGCGTGCAGCCTaGAGCAGCTTCCGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: NFLTIQKPILKGTQSRQAKERAA*SSFRRC
Trigger: GCACCGGCGGAAGCTGCTGCAGGCTGCACGCTCCTT...GGCTTGTCTGCTCTGCGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CTTCTGCAAAGCAGGGTGGCTCCTCAGTGGCTCAGCTTGGCAGAAGCAAACAGTGGGATCTTCTTCATGTaGTCCGTTGACTTCCGCATT +
Preference number: 4 (lower is better)
Translates to: LLQSRVAPQWLSLAEANSGIFFM*SVDFRI
Trigger: AATGCGGAAGTCAACGGAGCACATGAAGAAGATCCC...ACTGTTTGCTTCTGCCAAGCTGAGCCACTGAGGAGCCACCCTGCTTTGCAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR GCA 90 bp ATGCACAAGGGCATGGCTGGTACCAACCTTCCCCCTACAGAAAGTCTGTCCCTGGGGATCTTCTTCATGTaGTCCGTTGACTTCCGCATT +
Preference number: 4 (lower is better)
Translates to: MHKGMAGTNLPPTESLSLGIFFM*SVDFRI
Trigger: AATGCGGAAGTCAACGGAGCACATGAAGAAGATCCC...CAGGGACAGACTTTCTGTAGGGGGAAGGTTGGTACCAGCCATGCCCTTGTGCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR GCA 90 bp TCAATGCCCCAACAAAGCCACTTCTCCCTTCCAACATGGCTCCATTGGCCCAGCGGGATCTTCTTCATGTaGTCCGTTGACTTCCGCATT +
Preference number: 4 (lower is better)
Translates to: SMPQQSHFSLPTWLHWPSGIFFM*SVDFRI
Trigger: AATGCGGAAGTCAACGGAGCACATGAAGAAGATCCC...GCTGGGCCAATGGAGCCATGTTGGAAGGGAGAAGTGGCTTTGTTGGGGCATTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CACAGCCTTGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGGGGATCTTCTTCATGTaGTCCGTTGACTTCCGCATT +
Preference number: 4 (lower is better)
Translates to: HSLGFTQAPKAEPSMWHLGIFFM*SVDFRI
Trigger: AATGCGGAAGTCAACGGAGCACATGAAGAAGATCCC...CAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCAAGGCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAAGGTCCTCTGGGTCCTaGGCGGCGCAGGAAATGTTC +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRRSSGS*AAQEMF
Trigger: GAACATTTCCTGCGCCGCGCAGGACCCAGAGGACCT...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGATAGGCCACCTCAAATaGCTGCCCCAGGGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPIGHLK*LPQGQD
Trigger: ATCCTGACCCTGGGGCAGGCATTTGAGGTGGCCTAT...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTATAGGCCACCTCAAATaGCTGCCCCAGGGTCAGGAT +
Preference number: 4 (lower is better)
Translates to: RGCLRVSGPSQVLSCLKIIGHLK*LPQGQD
Trigger: ATCCTGACCCTGGGGCAGGCATTTGAGGTGGCCTAT...AATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TCACTGCTCCTTAAGCCCAGGAGGTGGCTCTCCACCCAAGTCACTTTAAAAAGCTGTGAGGGCCCTTGCTaGATGAGCAGACGTACTATC +
Preference number: 4 (lower is better)
Translates to: SLLLKPRRWLSTQVTLKSCEGPC*MSRRTI
Trigger: GATAGTACGTCTGCTCATCCAGCAAGGGCCCTCACA...GCTTTTTAAAGTGACTTGGGTGGAGAGCCACCTCCTGGGCTTAAGGAGCAGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGCAGTCCTCCCGTCTGTaGTCCCCAGCTTCTTGGTTT +
Preference number: 4 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPQSSRL*SPASWF
Trigger: AAACCAAGAAGCTGGGGACCACAGACGGGAGGACTG...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCTTGATGATTGCAGCCATGTGTTCTGAGTGCTCAAACCCAAGGTTTCTCAGACTGCCGCTCTGCCTGTaGTCTTCAGTCCTCCCGTCT +
Preference number: 4 (lower is better)
Translates to: VLMIAAMCSECSNPRFLRLPLCL*SSVLPS
Trigger: AGACGGGAGGACTGAAGACCACAGGCAGAGCGGCAG...TCTGAGAAACCTTGGGTTTGAGCACTCAGAACACATGGCTGCAATCATCAAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCTTGATGATTGCAGCCATGTGTTCTGAGTGCTCAAACCCAAGGTTTCTCAGACTTTGGGCTTGCTGGTaGGAGGGGCTCTGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: VLMIAAMCSECSNPRFLRLWACW*EGLCFW
Trigger: CCAGAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAG...TCTGAGAAACCTTGGGTTTGAGCACTCAGAACACATGGCTGCAATCATCAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GTCTTGATGATTGCAGCCATGTGTTCTGAGTGCTCAAACCCAAGGTTTCTCAGACAGCTTTGGGCTTGCTaGTGGGAGGGGCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: VLMIAAMCSECSNPRFLRQLWAC*WEGLCF
Trigger: GAAGCAGAGCCCCTCCCACCAGCAAGCCCAAAGCTG...TCTGAGAAACCTTGGGTTTGAGCACTCAGAACACATGGCTGCAATCATCAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTTGGAGCTGTAGCCACTaGACAGGAAAGAGTGGACAT +
Preference number: 4 (lower is better)
Translates to: QKHMSWTGHFLGHPEFRSWSCSH*TGKSGH
Trigger: ATGTCCACTCTTTCCTGTCCAGTGGCTACAGCTCCA...AGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTGTCCTGGCATCTTAGCTaGGAAAACCTTGGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: QRQEEEVPACDFRTECSLSWHLS*ENLGGF
Trigger: GAAGCCTCCAAGGTTTTCCCAGCTAAGATGCCAGGA...CAAGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TTCTTGGGCCATCCAGAGTTCCGGTCTCCTCTGCTAGATGCCTGGCGTCTTCGCTGGGAGATTAAATCCTaGCATCTTAGCTGGGAAAAC +
Preference number: 4 (lower is better)
Translates to: FLGHPEFRSPLLDAWRLRWEIKS*HLSWEN
Trigger: GTTTTCCCAGCTAAGATGCCAGGATTTAATCTCCCA...GCGAAGACGCCAGGCATCTAGCAGAGGAGACCGGAACTCTGGATGGCCCAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGACGGAGGGTCAGCTTaGTCTCACTGGGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRDGGSA*SHWAPP
Trigger: AGGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTC...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGCAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTAAAGATGAGCTTTTCTaGCTGGTGCTGCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SSVKRRKCLPVTLEQSAAKDELF*LVLPAL
Trigger: CAGAGCTGGCAGCACCAGCCAGAAAAGCTCATCTTT...AGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGCAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTTTGACTTCCGCATTTTaGCACAGGCATCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: SSVKRRKCLPVTLEQSAALTSAF*HRHLGW
Trigger: CCACCCAAGATGCCTGTGCCAAAATGCGGAAGTCAA...AGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CTGTGCAGTGAGGTGGTCTATGCTGATGCACAGGTTGGTTATGTTTGGTACCACTTCTCCATACTCCCCTaGGACATTGGTGCTATGGCG +
Preference number: 4 (lower is better)
Translates to: LCSEVVYADAQVGYVWYHFSILP*DIGAMA
Trigger: CGCCATAGCACCAATGTCTCAGGGGAGTATGGAGAA...GTGGTACCAAACATAACCAACCTGTGCATCAGCATAGACCACCTCACTGCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGGTCTCCCCCAATGGAGCTCATaGTTTTCTCAATCTCATCCC +
Preference number: 4 (lower is better)
Translates to: KNTCPGQATSWAIQSSGLPQWSS*FSQSHP
Trigger: GGGATGAGATTGAGAAAATCATGAGCTCCATTGGGG...GAGACCGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAACCCCAATGGAGCTCATaGTTTTCTCAATCTCATCCC +
Preference number: 4 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKPQWSS*FSQSHP
Trigger: GGGATGAGATTGAGAAAATCATGAGCTCCATTGGGG...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp AGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTCGCAGGACTCAAAGATaGGCTTTTCTGGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: RGCLRVSGPSQVLSCLKIRRTQR*AFLAGA
Trigger: AGCACCAGCCAGAAAAGCTCATCTTTGAGTCCTGCG...AATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGGAGAGACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATGCAGCCAGCAGGATTTaGACCACATCGGTCTTGCCA +
Preference number: 4 (lower is better)
Translates to: RRDPPGGGEEFLDYSETNAASRI*TTSVLP
Trigger: TGGCAAGACCGATGTGGTGCAAATCCTGCTGGCTGC...ATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTCTCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGACATCGAGGTATGTTCTaGTGGCCAGGGCTGTCAGGC +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRHRGMF*WPGLSG
Trigger: GCCTGACAGCCCTGGCCAGCAGAACATACCTCGATG...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGCAGCGTCAAGAGGAGGAAGTGCCTGCCTGTGACTTTAGAACAGAGTGCAGCTATCTCCCTCAGGTCCTaGTCTTCCATCACATTAGAC +
Preference number: 4 (lower is better)
Translates to: SSVKRRKCLPVTLEQSAAISLRS*SSITLD
Trigger: GTCTAATGTGATGGAAGAGCAGGACCTGAGGGAGAT...AGCTGCACTCTGTTCTAAAGTCACAGGCAGGCACTTCCTCCTCTTGACGCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp CAGAACGGCTCCTTCACAGTTCAGGCACAGCCTTGGTTTCACACAAGCGCCAAAGGGATCTTCTTCATGTaGTCCGTTGACTTCCGCATT +
Preference number: 4 (lower is better)
Translates to: QNGSFTVQAQPWFHTSAKGIFFM*SVDFRI
Trigger: AATGCGGAAGTCAACGGAGCACATGAAGAAGATCCC...TTTGGCGCTTGTGTGAAACCAAGGCTGTGCCTGAACTGTGAAGGAGCCGTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTTACGAGGTAGCTGGGCTGTaGAGGTCCTGTCCACTTCTT +
Preference number: 4 (lower is better)
Translates to: EGFRPISGPVLFKDWQLYEVAGL*RSCPLL
Trigger: AAGAAGTGGACAGGACCTCCACAGCCCAGCTACCTC...GTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGATCAGCTTGGTCTCACTaGGCTCCTCCTGGACTCGGA +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRSAWSH*APPGLG
Trigger: TCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGA...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGATTGGCACAGGCATCTTaGGTGGACTCTGTCCCTCGC +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRLAQAS*VDSVPR
Trigger: GCGAGGGACAGAGTCCACCCAAGATGCCTGTGCCAA...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGGTTTCACACAAGCGCCAAAGGCAGAGCCTTCCATGTGGCACTTGTCCTGAAACCGAGGCTTAGGCACTaGTTTGGAGGATTTTGTCTC +
Preference number: 4 (lower is better)
Translates to: WFHTSAKGRAFHVALVLKPRLRH*FGGFCL
Trigger: GAGACAAAATCCTCCAAACCAGTGCCTAAGCCTCGG...TTTCAGGACAAGTGCCACATGGAAGGCTCTGCCTTTGGCGCTTGTGTGAAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCCCGAGGCTTAGGCACTaGTTTGGAGGATTTTGTCTC +
Preference number: 4 (lower is better)
Translates to: CLRVSGPSQVLSCLKIGSPRLRH*FGGFCL
Trigger: GAGACAAAATCCTCCAAACCAGTGCCTAAGCCTCGG...GCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGTCCCTCGCAGATCTTTaGTCAGCATGGAACCCAGAT +
Preference number: 4 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPSLADL*SAWNPD
Trigger: ATCTGGGTTCCATGCTGATCAAAGATCTGCGAGGGA...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCTCTCGTGCTCCGCAATaGCGTTCTTGTTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: LIKNTCPGQATSWAIQSSSRAPQ*RSCWKH
Trigger: ATGCTTCCAACAAGAACGTCATTGCGGAGCACGAGA...GGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTGGCAGCTTTACTCTGCAGGTCCTTGGTaGTGTACGCGAAGGTACACA +
Preference number: 4 (lower is better)
Translates to: EGFRPISGPVLFKDWQLYSAGPW*CTRRYT
Trigger: TGTGTACCTTCGCGTACATCACCAAGGACCTGCAGA...GTAAAGCTGCCAATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GGATTATGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCAGCCCCAGGGTCAGGATaGTCTCGTAGGTCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: GLCFLSKTHVLDRPLLGPAPGSG*SRRSGS
Trigger: TGAACCTGACCTACGAGATCATCCTGACCCTGGGGC...TGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACATAATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCTTGAAGCGTGTGTTTCCGAGTaGTGCAGCTCAGGAGATTGG +
Preference number: 4 (lower is better)
Translates to: DPPGGGEEFLDYSETNLEACVSE*CSSGDW
Trigger: CCAATCTCCTGAGCTGCAGCACTCGGAAACACACGC...TTCAAGATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCGCCTCATGCAAAGCACTaGCCATCTCCGTCTGATAGT +
Preference number: 4 (lower is better)
Translates to: LSKTHVLDRPLLGPSRVPPHAKH*PSPSDS
Trigger: ACTATCAGACGGAGATGGGCAGTGCTTTGCATGAGG...CGGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGATTATGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCACGTTCAGCAGCAGCTTaGTCTCGTACTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: GLCFLSKTHVLDRPLLGPRSAAA*SRTAAG
Trigger: GCCTGCAGCAGTACGAGAGCAAGCTGCTGCTGAACG...TGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACATAATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp CTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAGTTCCCGGCCTCCTTGTTCATaGAGTCTCTGTCTGATGATC +
Preference number: 4 (lower is better)
Translates to: LIKNTCPGQATSWAIQSSRPPCS*SLCLMI
Trigger: GATCATCAGACAGAGACTCCATGAACAAGGAGGCCG...GGAACTCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGCAGAGCAGACAAGCCGACGGAGGGTCAGCTTaGTCTCACTGGGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: NFLTIQKPILKGTQSRQADGGSA*SHWAPP
Trigger: AGGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTC...GGCTTGTCTGCTCTGCGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGAGGCTGCCTGAGGGTTTCAGGCCCATCTCAGGTCCTGTCTTGTTTAAAGATTCCGAGGCTTAGGCACTaGTTTGGAGGATTTTGTCTC +
Preference number: 4 (lower is better)
Translates to: RGCLRVSGPSQVLSCLKIPRLRH*FGGFCL
Trigger: GAGACAAAATCCTCCAAACCAGTGCCTAAGCCTCGG...AATCTTTAAACAAGACAGGACCTGAGATGGGCCTGAAACCCTCAGGCAGCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCTTGAATTCTCCATACTCCCCTaGGACATTGGTGCTATGGCG +
Preference number: 4 (lower is better)
Translates to: DPPGGGEEFLDYSETNLEFSILP*DIGAMA
Trigger: CGCCATAGCACCAATGTCTCAGGGGAGTATGGAGAA...TTCAAGATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp TTTTCTTACAATCCAGTCCCACTGTCCACCATGAGCAGTAACTCCCATGACCTGATCTTCTGCTGCTCCTaGGAGAAGTCAATCCCTTCC +
Preference number: 4 (lower is better)
Translates to: FSYNPVPLSTMSSNSHDLIFCCS*EKSIPS
Trigger: GGAAGGGATTGACTTCTCTCAGGAGCAGCAGAAGAT...CAGGTCATGGGAGTTACTGCTCATGGTGGACAGTGGGACTGGATTGTAAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GTCTTGATGATTGCAGCCATGTGTTCTGAGTGCTCAAACCCAAGGTTTCTCAGATCTGCAGGTCCTTGGTaGTGTACGCGAAGGTACACA +
Preference number: 4 (lower is better)
Translates to: VLMIAAMCSECSNPRFLRSAGPW*CTRRYT
Trigger: TGTGTACCTTCGCGTACATCACCAAGGACCTGCAGA...TCTGAGAAACCTTGGGTTTGAGCACTCAGAACACATGGCTGCAATCATCAAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp TTTTCTTACAATCCAGTCCCACTGTCCACCATGAGCAGTAACTCCCATGACCTGAACAAAGCAGCCTCATaGAAAGCACTGCCCATCTCC +
Preference number: 4 (lower is better)
Translates to: FSYNPVPLSTMSSNSHDLNKAAS*KALPIS
Trigger: GGAGATGGGCAGTGCTTTGCATGAGGCTGCTTTGTT...CAGGTCATGGGAGTTACTGCTCATGGTGGACAGTGGGACTGGATTGTAAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp AGGAGAGACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCGGCCTCCTTGTTCATaGAGTCTCTGTCTGATGATC +
Preference number: 4 (lower is better)
Translates to: RRDPPGGGEEFLDYSETNRPPCS*SLCLMI
Trigger: GATCATCAGACAGAGACTCCATGAACAAGGAGGCCG...ATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTCTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TATCAGAGCCAACTCATGCACAAGGGCATGGCTGGTACCAACCTTCCCCCTACATGGGAGATTAAATCCTaGCATCTTAGCTGGGAAAAC +
Preference number: 4 (lower is better)
Translates to: YQSQLMHKGMAGTNLPPTWEIKS*HLSWEN
Trigger: GTTTTCCCAGCTAAGATGCCAGGATTTAATCTCCCA...TGTAGGGGGAAGGTTGGTACCAGCCATGCCCTTGTGCATGAGTTGGCTCTGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000232872.2
CDS-3UTR CCA 90 bp GCAGCTTTACCGAGAGGCCGGAGCCAAGTGTTAAAAATGTATAAAAAGGATTATGACGGAGGGTCAGCTTaGTCTCACTGGGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: AALPRGRSQVLKMYKKDYDGGSA*SHWAPP
Trigger: AGGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTC...ATAATCCTTTTTATACATTTTTAACACTTGGCTCCGGCCTCTCGGTAAAGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCTTGAACCTCATGCAAAGCACTaGCCATCTCCGTCTGATAGT +
Preference number: 4 (lower is better)
Translates to: DPPGGGEEFLDYSETNLEPHAKH*PSPSDS
Trigger: ACTATCAGACGGAGATGGGCAGTGCTTTGCATGAGG...TTCAAGATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GTCTTGATGATTGCAGCCATGTGTTCTGAGTGCTCAAACCCAAGGTTTCTCAGAAACAAAGCAGCCTCATaGAAAGCACTGCCCATCTCC +
Preference number: 4 (lower is better)
Translates to: VLMIAAMCSECSNPRFLRNKAAS*KALPIS
Trigger: GGAGATGGGCAGTGCTTTGCATGAGGCTGCTTTGTT...TCTGAGAAACCTTGGGTTTGAGCACTCAGAACACATGGCTGCAATCATCAAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GTCTTGATGATTGCAGCCATGTGTTCTGAGTGCTCAAACCCAAGGTTTCTCAGACAGGCCCTCAGAGGCTaGCAAGGGAAAATACTTCTT +
Preference number: 4 (lower is better)
Translates to: VLMIAAMCSECSNPRFLRQALRG*QGKILL
Trigger: AAGAAGTATTTTCCCTTGGCAGCCTCTGAGGGCCTG...TCTGAGAAACCTTGGGTTTGAGCACTCAGAACACATGGCTGCAATCATCAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGCAGAGCAGACAAGCCAGCTTGCTCTCGTACTaGTGCAGGCCAATCGACTCC +
Preference number: 4 (lower is better)
Translates to: NFLTIQKPILKGTQSRQASLLSY*CRPIDS
Trigger: GGAGTCGATTGGCCTGCAGCAGTACGAGAGCAAGCT...GGCTTGTCTGCTCTGCGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AGGAGAGACCCACCCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATGGGATCTTCTTCATGTaGTCCGTTGACTTCCGCATT +
Preference number: 4 (lower is better)
Translates to: RRDPPGGGEEFLDYSETNGIFFM*SVDFRI
Trigger: AATGCGGAAGTCAACGGAGCACATGAAGAAGATCCC...ATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGGGTGGGTCTCTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp TGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATCCAGAAAAGATGAGCTTTTCTaGCTGGTGCTGCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: CFLSKTHVLDRPLLGPSRKDELF*LVLPAL
Trigger: CAGAGCTGGCAGCACCAGCCAGAAAAGCTCATCTTT...TCTGGATGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp CCGGAGGAGGAGAGGAATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGGAACTTTCAGGACATTaGCAAGCTCTAGCTCCCAGA +
Preference number: 4 (lower is better)
Translates to: PEEERNFLTIQKPILKGTELSGH*QALAPR
Trigger: TCTGGGAGCTAGAGCTTGTCAATGTCCTGAAAGTTC...CGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATTCCTCTCCTCCTCCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CCA 90 bp GGATTATGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCATGGAGCTGTAGCCACTaGACAGGAAAGAGTGGACAT +
Preference number: 4 (lower is better)
Translates to: GLCFLSKTHVLDRPLLGPWSCSH*TGKSGH
Trigger: ATGTCCACTCTTTCCTGTCCAGTGGCTACAGCTCCA...TGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACATAATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR TCA 90 bp GGATTATGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCACCCCAATGGAGCTCATaGTTTTCTCAATCTCATCCC +
Preference number: 4 (lower is better)
Translates to: GLCFLSKTHVLDRPLLGPPQWSS*FSQSHP
Trigger: GGGATGAGATTGAGAAAATCATGAGCTCCATTGGGG...TGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACATAATCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGCAGAGCAGACAAGCCCAGCTTCTTGGTTTCTaGCGTGAGCAGCAGCTCATA +
Preference number: 4 (lower is better)
Translates to: NFLTIQKPILKGTQSRQAQLLGF*REQQLI
Trigger: TATGAGCTGCTGCTCACGGCAGAAACCAAGAAGCTG...GGCTTGTCTGCTCTGCGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp GGATTATGTTTCTTATCAAAAACACATGTCCTGGACAGGCCACTTCTTGGGCCAATCTCCCTCAGGTCCTaGTCTTCCATCACATTAGAC +
Preference number: 4 (lower is better)
Translates to: GLCFLSKTHVLDRPLLGPISLRS*SSITLD
Trigger: GTCTAATGTGATGGAAGAGCAGGACCTGAGGGAGAT...TGGCCCAAGAAGTGGCCTGTCCAGGACATGTGTTTTTGATAAGAAACATAATCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR GCA 90 bp AATTTCTTGACTATTCAGAAACCAATCTTGAAAGGGACGCAGAGCAGACAAGCCATGTTCCGGATCTCGTaGTCCGCAATGACGTTCTTG +
Preference number: 4 (lower is better)
Translates to: NFLTIQKPILKGTQSRQAMFRIS*SAMTFL
Trigger: CAAGAACGTCATTGCGGAGCACGAGATCCGGAACAT...GGCTTGTCTGCTCTGCGTCCCTTTCAAGATTGGTTTCTGAATAGTCAAGAAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CAA 72 bp AAACCAGAGTCTCCAAGGAAAGCAGGACTATCCACGTaGGCATCTGTAAATGCTGGTTCTTGGCTGAGATTA +
Preference number: 4 (lower is better)
Translates to: KPESPRKAGLST*ASVNAGSWLRL
Trigger: TAATCTCAGCCAAGAACCAGCATTTACAGATGCCAACGTGGATAGTCCTGCTTTCCTTGGAGACTCTGGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
CDS-3UTR CCA 90 bp GCAGCTTTACCGAGAGGCCGGAGCCAAGTGTTAAAAATGTATAAAAAGGATTATAAAGATGAGCTTTTCTaGCTGGTGCTGCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: AALPRGRSQVLKMYKKDYKDELF*LVLPAL
Trigger: CAGAGCTGGCAGCACCAGCCAGAAAAGCTCATCTTT...ATAATCCTTTTTATACATTTTTAACACTTGGCTCCGGCCTCTCGGTAAAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
3UTR CAA 72 bp AGGACTATCCACGTTGGCATCTGTAAATGCTGGTTCTaGGCTGAGATTATGACTCAAGATGTATACTCTCGG +
Preference number: 4 (lower is better)
Translates to: RTIHVGICKCWF*AEIMTQDVYSR
Trigger: CCGAGAGTATACATCTTGAGTCATAATCTCAGCCAAGAACCAGCATTTACAGATGCCAACGTGGATAGTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233866.2
CDS GCA 90 bp CTCGGGAGGCGGTCCCAGGGTCGGGCAGGCTGTCGTGCCGCCTCCTaGTTGTGTCTGCTGAGGGCAGCAGCAGGTCTGCCGACCGCCCTG +
Preference number: 5 (lower is better)
Translates to: LGRRSQGRAGCRAAS*LCLLRAAAGLPTAL
Trigger: CAGGGCGGTCGGCAGACCTGCTGCTGCCCTCAGCAGACACAAGCAGGAGGCGGCACGACAGCCTGCCCGACCCTGGGACCGCCTCCCGAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS GCA 90 bp CCGGGCTGCGGGGGTTCAGTGCCTTGCACGCCTGGCTCCTCTAGCTaGATGCTGGCCTCGTGGCAGGCGTCCTGCTGGGAGGACTCCGGG +
Preference number: 5 (lower is better)
Translates to: PGCGGSVPCTPGSSS*MLASWQASCWEDSG
Trigger: CCCGGAGTCCTCCCAGCAGGACGCCTGCCACGAGGCCAGCATGCAGCTAGAGGAGCCAGGCGTGCAAGGCACTGAACCCCCGCAGCCCGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS CCA 90 bp CTGGCCTCGTGGCAGGCGTCCTGCTGGGAGGACTCCGGGTGGCTCTaGCTGGGGGCCGTGAGCAGCTGGAAAGGGTCCTGCCCCACCTCA +
Preference number: 5 (lower is better)
Translates to: LASWQASCWEDSGWL*LGAVSSWKGSCPTS
Trigger: TGAGGTGGGGCAGGACCCTTTCCAGCTGCTCACGGCCCCCAGCCAGAGCCACCCGGAGTCCTCCCAGCAGGACGCCTGCCACGAGGCCAG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS CCA 90 bp TGCATGCTGGCCTCGTGGCAGGCGTCCTGCTGGGAGGACTCCGGGTaGCTCTGGCTGGGGGCCGTGAGCAGCTGGAAAGGGTCCTGCCCC +
Preference number: 5 (lower is better)
Translates to: CMLASWQASCWEDSG*LWLGAVSSWKGSCP
Trigger: GGGGCAGGACCCTTTCCAGCTGCTCACGGCCCCCAGCCAGAGCCACCCGGAGTCCTCCCAGCAGGACGCCTGCCACGAGGCCAGCATGCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp CTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACGTGCCGCCTCCTGCTaGTGTCTGCTGAGGGCAGCA +
Preference number: 5 (lower is better)
Translates to: LPPGQGPAGVGRPRPSRRRAASC*CLLRAA
Trigger: TGCTGCCCTCAGCAGACACAAGCAGGAGGCGGCACG...TCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS GCA 90 bp GGACCTGCCCGTCCTGCCCCTCCACAGAGTCCTGGCTCCGGCCGCTaGCGCTCTGCCTGTGGTCTTCAGTCCTCCCGTCTGTGGTCCCCA +
Preference number: 5 (lower is better)
Translates to: GPARPAPPQSPGSGR*RSACGLQSSRLWSP
Trigger: TGGGGACCACAGACGGGAGGACTGAAGACCACAGGCAGAGCGGCAGCGGCCGGAGCCAGGACTCTGTGGAGGGGCAGGACGGGCAGGTCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS GCA 90 bp GCTGCGGGGGTTCAGTGCCTTGCACGCCTGGCTCCTCTAGCTGCATaGTGGCCTCGTGGCAGGCGTCCTGCTGGGAGGACTCCGGGTGGC +
Preference number: 5 (lower is better)
Translates to: AAGVQCLARLAPLAA*WPRGRRPAGRTPGG
Trigger: GCCACCCGGAGTCCTCCCAGCAGGACGCCTGCCACGAGGCCAGCATGCAGCTAGAGGAGCCAGGCGTGCAAGGCACTGAACCCCCGCAGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS GCA 90 bp GGTCAGCTTGGTCTCACTGGGCTCCTCCTGGACTCGGAAGCGGTCTaGTCGGGAGGCGGTCCCAGGGTCGGGCAGGCTGTCGTGCCGCCT +
Preference number: 5 (lower is better)
Translates to: GQLGLTGLLLDSEAV*SGGGPRVGQAVVPP
Trigger: AGGCGGCACGACAGCCTGCCCGACCCTGGGACCGCCTCCCGAGCAGACCGCTTCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGACC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS CCA 90 bp AGGCTGGGTGGACGGAGGGTCAGCTTGGTCTCACTGGGCTCCTCCTaGACTCGGAAGCGGTCTGCTCGGGAGGCGGTCCCAGGGTCGGGC +
Preference number: 5 (lower is better)
Translates to: RLGGRRVSLVSLGSS*TRKRSAREAVPGSG
Trigger: GCCCGACCCTGGGACCGCCTCCCGAGCAGACCGCTTCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTCCACCCAGCCT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS CCA 90 bp AGGGCGCGGCTAGGCTGGGTGGACGGAGGGTCAGCTTGGTCTCACTaGGCTCCTCCTGGACTCGGAAGCGGTCTGCTCGGGAGGCGGTCC +
Preference number: 5 (lower is better)
Translates to: RARLGWVDGGSAWSH*APPGLGSGLLGRRS
Trigger: GGACCGCCTCCCGAGCAGACCGCTTCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTCCACCCAGCCTAGCCGCGCCCT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp CCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGACAGGAGCTGCAGCTCAGGAGATaGGGGTGTGCACCCAGCAGC +
Preference number: 5 (lower is better)
Translates to: PGQGPAGVGRPRPSRRQELQLRR*GCAPSS
Trigger: GCTGCTGGGTGCACACCCCAATCTCCTGAGCTGCAG...CTCCTGTCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp CCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGGACGGAGGGTCAGCTaGGTCTCACTGGGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: PGVFAASRAGSCRCRQAQGRRVS*VSLGSS
Trigger: GGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTCC...CTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS CCA 90 bp TCAGTGCCTTGCACGCCTGGCTCCTCTAGCTGCATGCTGGCCTCGTaGCAGGCGTCCTGCTGGGAGGACTCCGGGTGGCTCTGGCTGGGG +
Preference number: 5 (lower is better)
Translates to: SVPCTPGSSSCMLAS*QASCWEDSGWLWLG
Trigger: CCCCAGCCAGAGCCACCCGGAGTCCTCCCAGCAGGACGCCTGCCACGAGGCCAGCATGCAGCTAGAGGAGCCAGGCGTGCAAGGCACTGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS CCA 90 bp CTGGCCAGGGCTGTCAGGCCTGCCGGCAAGCCCACTCTCTTGCTTTaGTCAGGGACGCCGGGCTGCGGGGGTTCAGTGCCTTGCACGCCT +
Preference number: 5 (lower is better)
Translates to: LARAVRPAGKPTLLL*SGTPGCGGSVPCTP
Trigger: AGGCGTGCAAGGCACTGAACCCCCGCAGCCCGGCGTCCCTGACCAAAGCAAGAGAGTGGGCTTGCCGGCAGGCCTGACAGCCCTGGCCAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp GGCCCAGGCCGAGCAGGCGACAGGAGGTCCTACAGCAGGACTGGGCCTGGGTCTTCACTCCAGCAGCCCTaGTTCCGGTGGCCTCGGCCT +
Preference number: 5 (lower is better)
Translates to: GPGRAGDRRSYSRTGPGSSLQQP*FRWPRP
Trigger: AGGCCGAGGCCACCGGAACAAGGGCTGCTGGAGTGA...AGACCCAGGCCCAGTCCTGCTGTAGGACCTCCTGTCGCCTGCTCGGCCTGGGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp GCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGCCTGGATTTCTGGGCTaGGAGGGCCAGCTGATAGGC +
Preference number: 5 (lower is better)
Translates to: ASSLPPGQGPAGVGRPRPPGFLG*EGQLIG
Trigger: GCCTATCAGCTGGCCCTCCAAGCCCAGAAATCCAGG...CGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233309.2
ENSMUST00000233525.2
CDS GCA 90 bp CCGTCCTGCCCCTCCACAGAGTCCTGGCTCCGGCCGCTGCCGCTCTaGCTGTGGTCTTCAGTCCTCCCGTCTGTGGTCCCCAGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: PSCPSTESWLRPLPL*LWSSVLPSVVPSFL
Trigger: CAAGAAGCTGGGGACCACAGACGGGAGGACTGAAGACCACAGGCAGAGCGGCAGCGGCCGGAGCCAGGACTCTGTGGAGGGGCAGGACGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS CCA 90 bp CAGGAGCATAGGGCGCGGCTAGGCTGGGTGGACGGAGGGTCAGCTTaGTCTCACTGGGCTCCTCCTGGACTCGGAAGCGGTCTGCTCGGG +
Preference number: 5 (lower is better)
Translates to: QEHRARLGWVDGGSA*SHWAPPGLGSGLLG
Trigger: CCCGAGCAGACCGCTTCCGAGTCCAGGAGGAGCCCAGTGAGACCAAGCTGACCCTCCGTCCACCCAGCCTAGCCGCGCCCTATGCTCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp GCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGTGCAGCCAGCAGGATTaGCACCACATCGGTCTTGCC +
Preference number: 5 (lower is better)
Translates to: ASSLPPGQGPAGVGRPRPCSQQD*HHIGLA
Trigger: GGCAAGACCGATGTGGTGCAAATCCTGCTGGCTGCA...CGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp GCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGGCTATGGCGTCTGTGTaGGAGAGGAGAGGTAGCTGG +
Preference number: 5 (lower is better)
Translates to: ASSLPPGQGPAGVGRPRPAMASV*ERRGSW
Trigger: CCAGCTACCTCTCCTCTCCAACACAGACGCCATAGC...CGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp CAGTGTTCCCTGGGCTTTGCGCCCACTGCAGAGCCCACTGAGCTCACCTCTGGCCGCTGCGACTCCCCATaGTGGCGTCCTCCGTGGGGG +
Preference number: 5 (lower is better)
Translates to: QCSLGFAPTAEPTELTSGRCDSP*WRPPWG
Trigger: CCCCCACGGAGGACGCCACAATGGGGAGTCGCAGCG...GCCAGAGGTGAGCTCAGTGGGCTCTGCAGTGGGCGCAAAGCCCAGGGAACACTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS TCA 90 bp CCCAGGGTCGGGCAGGCTGTCGTGCCGCCTCCTGCTTGTGTCTGCTaGGGGCAGCAGCAGGTCTGCCGACCGCCCTGTGCAGGAATCATT +
Preference number: 5 (lower is better)
Translates to: PRVGQAVVPPPACVC*GQQQVCRPPCAGII
Trigger: AATGATTCCTGCACAGGGCGGTCGGCAGACCTGCTGCTGCCCTCAGCAGACACAAGCAGGAGGCGGCACGACAGCCTGCCCGACCCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000232872.2
ENSMUST00000233525.2
CDS GCA 90 bp TTCTGCTGGCCAGGGCTGTCAGGCCTGCCGGCAAGCCCACTCTCTTaGTTTGGTCAGGGACGCCGGGCTGCGGGGGTTCAGTGCCTTGCA +
Preference number: 5 (lower is better)
Translates to: FCWPGLSGLPASPLS*FGQGRRAAGVQCLA
Trigger: TGCAAGGCACTGAACCCCCGCAGCCCGGCGTCCCTGACCAAAGCAAGAGAGTGGGCTTGCCGGCAGGCCTGACAGCCCTGGCCAGCAGAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS CCA 90 bp GTGGGGTCCGTGAGCTCCTCCAGCAGAGCCTTCACGACCTCCGTGTaGCCGTACTGGGCCGCGCAGTGCAGGGCCGTCTCATTGTCGTTG +
Preference number: 5 (lower is better)
Translates to: VGSVSSSSRAFTTSV*PYWAAQCRAVSLSL
Trigger: CAACGACAATGAGACGGCCCTGCACTGCGCGGCCCAGTACGGCCACACGGAGGTCGTGAAGGCTCTGCTGGAGGAGCTCACGGACCCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp CTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGGCCGAGCAGGCGAGGCGTTTCAAACTTGTaGTTGCGCATGGTGGGGTCC +
Preference number: 5 (lower is better)
Translates to: LPPGQGPAGVGRPRPSRRGVSNL*LRMVGS
Trigger: GGACCCCACCATGCGCAACAACAAGTTTGAAACGCC...TCGCCTGCTCGGCCTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp CCTGGCGTCTTCGCTGCCTCCAGGGCAGGGTCCTGCAGGTGTCGGCAGGCCCAGAGTTTGAGCTCAGCTTaGGGCTTGCTGGTGGGAGGG +
Preference number: 5 (lower is better)
Translates to: PGVFAASRAGSCRCRQAQSLSSA*GLLVGG
Trigger: CCCTCCCACCAGCAAGCCCAAAGCTGAGCTCAAACT...CTGGGCCTGCCGACACCTGCAGGACCCTGCCCTGGAGGCAGCGAAGACGCCAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp AGGATTGCAGCTCACAACCGCTGTTCAGGCCTGGCCTCCTGTCCCCAGGACCAGCGCTGCGACTCCCCATaGTGGCGTCCTCCGTGGGGG +
Preference number: 5 (lower is better)
Translates to: RIAAHNRCSGLASCPQDQRCDSP*WRPPWG
Trigger: CCCCCACGGAGGACGCCACAATGGGGAGTCGCAGCG...CTGGTCCTGGGGACAGGAGGCCAGGCCTGAACAGCGGTTGTGAGCTGCAATCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025058.15
ENSMUST00000088027.7
ENSMUST00000114842.9
ENSMUST00000139173.3
ENSMUST00000233525.2
CDS-3UTR CAA 90 bp CCAAAGTCCCCTGCTGGGACACAGGGCCTGCAGGGCGGCAGGCCAGCCAAGAGGGTGGGACGGGGCCTCTaGGTCAGAATCAGGTGGTTC +
Preference number: 5 (lower is better)
Translates to: PKSPAGTQGLQGGRPAKRVGRGL*VRIRWF
Trigger: GAACCACCTGATTCTGACCAAGAGGCCCCGTCCCAC...CCTCTTGGCTGGCCTGCCGCCCTGCAGGCCCTGTGTCCCAGCAGGGGACTTTGG</