RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANKRD9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037904

Ensembl transcript IDs: ENSMUST00000043459.13, ENSMUST00000128353.8, ENSMUST00000135131.2, ENSMUST00000140788.8, ENSMUST00000142012.2, ENSMUST00000148765.2

Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCAGCTGTCACCTTCCCCGGGACTCTAGGTCCTCACCCTTATCCTTaGCTGAGCAGCGAGTTCGCACACTTGAGCAACTTGGCAGCCCTA +
Preference number: 1 (lower is better)
Translates to: SAVTFPGTLGPHPYP*LSSEFAHLSNLAAL
Trigger: TAGGGCTGCCAAGTTGCTCAAGTGTGCGAACTCGCTGCTCAGCCAAGGATAAGGGTGAGGACCTAGAGTCCCGGGGAAGGTGACAGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR GCA 90 bp AACCACACAAGCTTGTCCCCTTGGCCTCAGCACATTCTGTCCTCTTaGTTGGTCATTAGAGTCCCCACCCTCTGTTCCTGTTCCTCTCCT +
Preference number: 1 (lower is better)
Translates to: NHTSLSPWPQHILSS*LVIRVPTLCSCSSP
Trigger: AGGAGAGGAACAGGAACAGAGGGTGGGGACTCTAATGACCAAGCAAGAGGACAGAATGTGCTGAGGCCAAGGGGACAAGCTTGTGTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp CCTCCTGTGGCCCAGCACCCTGGACATTCCCACCCCCGGGCATGCTGTACTCAGGGCCATCCCTGGGGCTaGGCAGGGGGACCTGGAAGG +
Preference number: 2 (lower is better)
Translates to: PPVAQHPGHSHPRACCTQGHPWG*AGGPGR
Trigger: CCTTCCAGGTCCCCCTGCCCAGCCCCAGGGATGGCC...CTGAGTACAGCATGCCCGGGGGTGGGAATGTCCAGGGTGCTGGGCCACAGGAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp GGTCCAGGACAGGTGGCAAAGTCTAGGGCCCTCTGTTCTCTGGGCTTCCCCTCCTGTGGCCCAGCACCCTaGACATTCCCACCCCCGGGC +
Preference number: 2 (lower is better)
Translates to: GPGQVAKSRALCSLGFPSCGPAP*TFPPPG
Trigger: GCCCGGGGGTGGGAATGTCCAGGGTGCTGGGCCACA...GGAGGGGAAGCCCAGAGAACAGAGGGCCCTAGACTTTGCCACCTGTCCTGGACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp CCTCCTGTGGCCCAGCACCCTGGACATTCCCACCCCCGGGCATGCTGTACTCAGAACTCCAGGCTGGGGTaGAGAAGCAATGATTCAGTG +
Preference number: 2 (lower is better)
Translates to: PPVAQHPGHSHPRACCTQNSRLG*RSNDSV
Trigger: CACTGAATCATTGCTTCTCCACCCCAGCCTGGAGTT...CTGAGTACAGCATGCCCGGGGGTGGGAATGTCCAGGGTGCTGGGCCACAGGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR CAA 90 bp CTCAGCTGTCACCTTCCCCGGGACTCTAGGTCCTCACCCTTATCCTaGGCTGAGCAGCGAGTTCGCACACTTGAGCAACTTGGCAGCCCT +
Preference number: 2 (lower is better)
Translates to: LSCHLPRDSRSSPLS*AEQRVRTLEQLGSP
Trigger: AGGGCTGCCAAGTTGCTCAAGTGTGCGAACTCGCTGCTCAGCCAAGGATAAGGGTGAGGACCTAGAGTCCCGGGGAAGGTGACAGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp CAAAGCCTGTGGGGAAGCAGGTGGGGAAACCCAAGGCTAGCACCTGCCAAGTCCTGTTCCTCTCCTGCTTaGCTCAGCTGTCACCTTCCC +
Preference number: 2 (lower is better)
Translates to: QSLWGSRWGNPRLAPAKSCSSPA*LSCHLP
Trigger: GGGAAGGTGACAGCTGAGCCAAGCAGGAGAGGAACA...GGACTTGGCAGGTGCTAGCCTTGGGTTTCCCCACCTGCTTCCCCACAGGCTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp AATCCCTTGACAATAACACGGGTCCAGGACAGGTGGCAAAGTCTAGGGCCCTCTGGGCTTCCCCTCCTGTaGCCCAGCACCCTGGACATT +
Preference number: 2 (lower is better)
Translates to: NPLTITRVQDRWQSLGPSGLPLL*PSTLDI
Trigger: AATGTCCAGGGTGCTGGGCCACAGGAGGGGAAGCCC...AGAGGGCCCTAGACTTTGCCACCTGTCCTGGACCCGTGTTATTGTCAAGGGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR GCA 90 bp CACAGTCTGGCTCCCATTCAACACCTGCTAGAGCTGCCTGCTCAGCTCTGCTGGTTCCTGTTCCTCTCCTaGTTGGCTCAGCTGTCACCT +
Preference number: 2 (lower is better)
Translates to: HSLAPIQHLLELPAQLCWFLFLS*LAQLSP
Trigger: AGGTGACAGCTGAGCCAAGCAGGAGAGGAACAGGAA...CCAGCAGAGCTGAGCAGGCAGCTCTAGCAGGTGTTGAATGGGAGCCAGACTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp CACAGTCTGGCTCCCATTCAACACCTGCTAGAGCTGCCTGCTCAGCTCTGCTGGACAAGCTTGTCCCCTTaGCCTCAGCACATTCTGTCC +
Preference number: 2 (lower is better)
Translates to: HSLAPIQHLLELPAQLCWTSLSP*PQHILS
Trigger: GGACAGAATGTGCTGAGGCCAAGGGGACAAGCTTGT...CCAGCAGAGCTGAGCAGGCAGCTCTAGCAGGTGTTGAATGGGAGCCAGACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp CACAGTCTGGCTCCCATTCAACACCTGCTAGAGCTGCCTGCTCAGCTCTGCTGGTTCTGTCCTCTTGCTTaGTCATTAGAGTCCCCACCC +
Preference number: 2 (lower is better)
Translates to: HSLAPIQHLLELPAQLCWFCPLA*SLESPP
Trigger: GGGTGGGGACTCTAATGACCAAGCAAGAGGACAGAA...CCAGCAGAGCTGAGCAGGCAGCTCTAGCAGGTGTTGAATGGGAGCCAGACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp CAGCTTTGCAGCCAGGGCCCCTTTATCCTGAAGGATGAGGGTGCATTCATTAACCCTGCTCAGCTCTGCTaGACACACATCAGTCCAACC +
Preference number: 2 (lower is better)
Translates to: QLCSQGPFILKDEGAFINPAQLC*THISPT
Trigger: GGTTGGACTGATGTGTGTCCAGCAGAGCTGAGCAGG...GTTAATGAATGCACCCTCATCCTTCAGGATAAAGGGGCCCTGGCTGCAAAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp CCAGCAGAAAGCAGCATTCCAAGGATGGGTGAGAAGCCTATCCAGGGTGATAACGGGCCAACTCCAGGCTaGGGTGGAGAAGCAATGATT +
Preference number: 2 (lower is better)
Translates to: PAESSIPRMGEKPIQGDNGPTPG*GGEAMI
Trigger: AATCATTGCTTCTCCACCCCAGCCTGGAGTTGGCCC...GTTATCACCCTGGATAGGCTTCTCACCCATCCTTGGAATGCTGCTTTCTGCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp CTGACTGAGGGTAAAAGGGCCAACTCCAGGCTGGGGTGGAGAAGCAATGATTCACATCAGTCCAACCCATaGGCCATTTATGAGGCTGAC +
Preference number: 2 (lower is better)
Translates to: LTEGKRANSRLGWRSNDSHQSNP*AIYEAD
Trigger: GTCAGCCTCATAAATGGCCCATGGGTTGGACTGATG...TGAATCATTGCTTCTCCACCCCAGCCTGGAGTTGGCCCTTTTACCCTCAGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR GCA 90 bp CAAAGCCTGTGGGGAAGCAGGTGGGGAAACCCAAGGCTAGCACCTGCCAAGTCCTCCATATATGTAAAGTaGCAAGTACAATGCTCTCAA +
Preference number: 2 (lower is better)
Translates to: QSLWGSRWGNPRLAPAKSSIYVK*QVQCSQ
Trigger: TTGAGAGCATTGTACTTGGCACTTTACATATATGGA...GGACTTGGCAGGTGCTAGCCTTGGGTTTCCCCACCTGCTTCCCCACAGGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR GCA 90 bp CAGCTTTGCAGCCAGGGCCCCTTTATCCTGAAGGATGAGGGTGCATTCATTAACCACATTCTGTCCTCTTaGTTGGTCATTAGAGTCCCC +
Preference number: 2 (lower is better)
Translates to: QLCSQGPFILKDEGAFINHILSS*LVIRVP
Trigger: GGGGACTCTAATGACCAAGCAAGAGGACAGAATGTG...GTTAATGAATGCACCCTCATCCTTCAGGATAAAGGGGCCCTGGCTGCAAAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CCA 90 bp CTTTCTTTTTCAGGCCTAGGAAATGGCCTAAAATCCCTTGACAATAACACGGGTCTGTGGGGAAGCAGGTaGGGAAACCCAAGGCTAGCA +
Preference number: 2 (lower is better)
Translates to: LSFSGLGNGLKSLDNNTGLWGSR*GNPRLA
Trigger: TGCTAGCCTTGGGTTTCCCCACCTGCTTCCCCACAG...ACCCGTGTTATTGTCAAGGGATTTTAGGCCATTTCCTAGGCCTGAAAAAGAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR TCA 90 bp CAGCTTTGCAGCCAGGGCCCCTTTATCCTGAAGGATGAGGGTGCATTCATTAACAGCAATGATTCAGTGTaGGATGAGAACACAGACACA +
Preference number: 2 (lower is better)
Translates to: QLCSQGPFILKDEGAFINSNDSV*DENTDT
Trigger: TGTGTCTGTGTTCTCATCTCACACTGAATCATTGCT...GTTAATGAATGCACCCTCATCCTTCAGGATAAAGGGGCCCTGGCTGCAAAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR TCA 90 bp TCAGGCCTAGGAAATGGCCTAAAATCCCTTGACAATAACACGGGTCCAGGACAGCTATGCCACAAAGGTTaGATTTCACAGCCCAGCAAA +
Preference number: 2 (lower is better)
Translates to: SGLGNGLKSLDNNTGPGQLCHKG*ISQPSK
Trigger: TTTGCTGGGCTGTGAAATTCAACCTTTGTGGCATAG...CTGTCCTGGACCCGTGTTATTGTCAAGGGATTTTAGGCCATTTCCTAGGCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR GCA 90 bp GCAAGTACCCTTTCTTTTTCAGGCCTAGGAAATGGCCTAAAATCCCTTGACAATCAGCACATCATGGCCTaGAAGCCTATGCCACAAAGG +
Preference number: 2 (lower is better)
Translates to: ASTLSFSGLGNGLKSLDNQHIMA*KPMPQR
Trigger: CCTTTGTGGCATAGGCTTGCAGGCCATGATGTGCTG...ATTGTCAAGGGATTTTAGGCCATTTCCTAGGCCTGAAAAAGAAAGGGTACTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR TCA 72 bp GGACGGGCCCTCCCCCAGTCTCAAAGTTCCCTGGTATaGACCCAGCTTTGCAGCCAGGGCCCCTTTATCCTG +
Preference number: 3 (lower is better)
Translates to: GRALPQSQSSLV*TQLCSQGPFIL
Trigger: CAGGATAAAGGGGCCCTGGCTGCAAAGCTGGGTTCATACCAGGGAACTTTGAGACTGGGGGAGGGCCCGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CAA 90 bp CACAGTCTGGCTCCCATTCAACACCTGCTAGAGCTGCCTGCTCAGCTCTGCTGGTCCTCACCCTTATCCTaGGCTGAGCAGCGAGTTCGC +
Preference number: 3 (lower is better)
Translates to: HSLAPIQHLLELPAQLCWSSPLS*AEQRVR
Trigger: GCGAACTCGCTGCTCAGCCAAGGATAAGGGTGAGGA...CCAGCAGAGCTGAGCAGGCAGCTCTAGCAGGTGTTGAATGGGAGCCAGACTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CAA 90 bp CTCAGCTGTCACCTTCCCCGGGACTCTAGGTCCTCACCCTTATCCTTGGCTGAGAGCGAGTTCGCACACTaGAGCAACTTGGCAGCCCTA +
Preference number: 3 (lower is better)
Translates to: LSCHLPRDSRSSPLSLAESEFAH*SNLAAL
Trigger: TAGGGCTGCCAAGTTGCTCAAGTGTGCGAACTCGCT...CTCAGCCAAGGATAAGGGTGAGGACCTAGAGTCCCGGGGAAGGTGACAGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CAA 90 bp CACAGTCTGGCTCCCATTCAACACCTGCTAGAGCTGCCTGCTCAGCTCTGCTGGCAAAACCACACAAGCTaGTCCCCTTGGCCTCAGCAC +
Preference number: 3 (lower is better)
Translates to: HSLAPIQHLLELPAQLCWQNHTS*SPWPQH
Trigger: GTGCTGAGGCCAAGGGGACAAGCTTGTGTGGTTTTG...CCAGCAGAGCTGAGCAGGCAGCTCTAGCAGGTGTTGAATGGGAGCCAGACTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR GCA 72 bp CCCATTCAACACCTGCTAGAGCTGCCTGCTCAGCTCTaGTGGACACACATCAGTCCAACCCATGGGCCATTT +
Preference number: 3 (lower is better)
Translates to: PIQHLLELPAQL*WTHISPTHGPF
Trigger: AAATGGCCCATGGGTTGGACTGATGTGTGTCCAGCAGAGCTGAGCAGGCAGCTCTAGCAGGTGTTGAATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR GCA 72 bp ACAGCTAGCCTCTGCTCCTGGCAGCACATCATGGCCTaGAAGCCTATGCCACAAAGGTTGAATTTCACAGCC +
Preference number: 3 (lower is better)
Translates to: TASLCSWQHIMA*KPMPQRLNFTA
Trigger: GGCTGTGAAATTCAACCTTTGTGGCATAGGCTTGCAGGCCATGATGTGCTGCCAGGAGCAGAGGCTAGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR CCA 72 bp TGTCCCCTTGGCCTCAGCACATTCTGTCCTCTTGCTTaGTCATTAGAGTCCCCACCCTCTGTTCCTGTTCCT +
Preference number: 3 (lower is better)
Translates to: CPLGLSTFCPLA*SLESPPSVPVP
Trigger: AGGAACAGGAACAGAGGGTGGGGACTCTAATGACCAAGCAAGAGGACAGAATGTGCTGAGGCCAAGGGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR-3UTR CAA 90 bp AATCCCTTGACAATAACACGGGTCCAGGACAGGTGGCAAAGTCTAGGGCCCTCTGCACACTTGAGCAACTaGGCAGCCCTACCCCAAATA +
Preference number: 3 (lower is better)
Translates to: NPLTITRVQDRWQSLGPSAHLSN*AALPQI
Trigger: TATTTGGGGTAGGGCTGCCAAGTTGCTCAAGTGTGC...AGAGGGCCCTAGACTTTGCCACCTGTCCTGGACCCGTGTTATTGTCAAGGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR TCA 72 bp GATGAGGGTGCATTCATTAACAAGCCTCCCGGCTTCTaGAGTGTCCAGCAGAAAGCAGCATTCCAAGGATGG +
Preference number: 3 (lower is better)
Translates to: DEGAFINKPPGF*SVQQKAAFQGW
Trigger: CCATCCTTGGAATGCTGCTTTCTGCTGGACACTTCAGAAGCCGGGAGGCTTGTTAATGAATGCACCCTCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR GCA 90 bp CCTCCTGTGGCCCAGCACCCTGGACATTCCCACCCCCGGGCATGCTGTACTCAGGAGGCACTCGGGGCGTaGGAGCTCACAGGCCACATG +
Preference number: 4 (lower is better)
Translates to: PPVAQHPGHSHPRACCTQEALGA*ELTGHM
Trigger: CATGTGGCCTGTGAGCTCGCACGCCCCGAGTGCCTC...CTGAGTACAGCATGCCCGGGGGTGGGAATGTCCAGGGTGCTGGGCCACAGGAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR GCA 90 bp CCTCCTGTGGCCCAGCACCCTGGACATTCCCACCCCCGGGCATGCTGTACTCAGGGGTGGCGCCAGCCCTaGCAGCCACTGGAACTTGTC +
Preference number: 4 (lower is better)
Translates to: PPVAQHPGHSHPRACCTQGWRQP*QPLELV
Trigger: GACAAGTTCCAGTGGCTGGCAGGGCTGGCGCCACCC...CTGAGTACAGCATGCCCGGGGGTGGGAATGTCCAGGGTGCTGGGCCACAGGAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR TCA 90 bp CCTCCTGTGGCCCAGCACCCTGGACATTCCCACCCCCGGGCATGCTGTACTCAGAGCAGCAGGCGGCGCTaGCACACCTCCTCAGACGAA +
Preference number: 4 (lower is better)
Translates to: PPVAQHPGHSHPRACCTQSSRRR*HTSSDE
Trigger: TTCGTCTGAGGAGGTGTGTCAGCGCCGCCTGCTGCT...CTGAGTACAGCATGCCCGGGGGTGGGAATGTCCAGGGTGCTGGGCCACAGGAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR GCA 90 bp AATCCCTTGACAATAACACGGGTCCAGGACAGGTGGCAAAGTCTAGGGCCCTCTCGCCCTCCACGCGGCTaGAGCCACGGCGGTCGAGGA +
Preference number: 4 (lower is better)
Translates to: NPLTITRVQDRWQSLGPSRPPRG*SHGGRG
Trigger: TCCTCGACCGCCGTGGCTGCAGCCGCGTGGAGGGCG...AGAGGGCCCTAGACTTTGCCACCTGTCCTGGACCCGTGTTATTGTCAAGGGATT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR CCA 90 bp CTCAGCTGTCACCTTCCCCGGGACTCTAGGTCCTCACCCTTATCCTTGGCTGAGCACGCGCTCTTCCACTaGGAAGTCCTGCACCGTTCG +
Preference number: 4 (lower is better)
Translates to: LSCHLPRDSRSSPLSLAEHALFH*EVLHRS
Trigger: CGAACGGTGCAGGACTTCCCAGTGGAAGAGCGCGTG...CTCAGCCAAGGATAAGGGTGAGGACCTAGAGTCCCGGGGAAGGTGACAGCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR GCA 90 bp CTCAGCTGTCACCTTCCCCGGGACTCTAGGTCCTCACCCTTATCCTTGGCTGAGGATGACTTCCGGCACTaGTTCTGCACCCGCAAGCGA +
Preference number: 4 (lower is better)
Translates to: LSCHLPRDSRSSPLSLAEDDFRH*FCTRKR
Trigger: TCGCTTGCGGGTGCAGAAGCAGTGCCGGAAGTCATC...CTCAGCCAAGGATAAGGGTGAGGACCTAGAGTCCCGGGGAAGGTGACAGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR GCA 90 bp TGGCCTCAGCACATTCTGTCCTCTTGCTTGGTCATTAGAGTCCCCACCCTCTGTGGATGCGCCGCAGGATaGCCACGCGGTTGTAGCGCA +
Preference number: 4 (lower is better)
Translates to: WPQHILSSCLVIRVPTLCGCAAG*PRGCSA
Trigger: TGCGCTACAACCGCGTGGGCATCCTGCGGCGCATCC...ACAGAGGGTGGGGACTCTAATGACCAAGCAAGAGGACAGAATGTGCTGAGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR GCA 90 bp GGAGAAGCAATGATTCAGTGTGAGATGAGAACACAGACACACAGTCTGGCTCCCCCACATGCAGCGACGTaGCACCGCCCTCCACGCGGC +
Preference number: 4 (lower is better)
Translates to: GEAMIQCEMRTQTHSLAPPHAAT*HRPPRG
Trigger: GCCGCGTGGAGGGCGGTGGCACGTCGCTGCATGTGG...GGGAGCCAGACTGTGTGTCTGTGTTCTCATCTCACACTGAATCATTGCTTCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR CCA 90 bp AGAACACAGACACACAGTCTGGCTCCCATTCAACACCTGCTAGAGCTGCCTGCTGACAAAGAGGGAGGGTaGCGCCAGCCCTGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: RTQTHSLAPIQHLLELPADKEGG*RQPCQP
Trigger: TGGCTGGCAGGGCTGGCGCCACCCTCCCTCTTTGTC...AGCAGGCAGCTCTAGCAGGTGTTGAATGGGAGCCAGACTGTGTGTCTGTGTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR TCA 90 bp CTCAGCTGTCACCTTCCCCGGGACTCTAGGTCCTCACCCTTATCCTTGGCTGAGGTAGAAGGCGAAGGATaGCTTCCGGCACTGCTTCTG +
Preference number: 4 (lower is better)
Translates to: LSCHLPRDSRSSPLSLAEVEGEG*LPALLL
Trigger: CAGAAGCAGTGCCGGAAGTCATCCTTCGCCTTCTAC...CTCAGCCAAGGATAAGGGTGAGGACCTAGAGTCCCGGGGAAGGTGACAGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR GCA 90 bp CAGCTTTGCAGCCAGGGCCCCTTTATCCTGAAGGATGAGGGTGCATTCATTAACAGCTCACAGGCCACATaGAGCGACGTGCCACCGCCC +
Preference number: 4 (lower is better)
Translates to: QLCSQGPFILKDEGAFINSSQAT*SDVPPP
Trigger: GGGCGGTGGCACGTCGCTGCATGTGGCCTGTGAGCT...GTTAATGAATGCACCCTCATCCTTCAGGATAAAGGGGCCCTGGCTGCAAAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR GCA 90 bp CTGACTGAGGGTAAAAGGGCCAACTCCAGGCTGGGGTGGAGAAGCAATGATTCAGTGAGGTCCAAGGGCTaGAAAAACGATGGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: LTEGKRANSRLGWRSNDSVRSKG*KNDGRG
Trigger: GCCTCTGCCATCGTTTTTGCAGCCCTTGGACCTCAC...TGAATCATTGCTTCTCCACCCCAGCCTGGAGTTGGCCCTTTTACCCTCAGTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR CAA 72 bp TTGTCCCCTTGGCCTCAGCACATTCTGTCCTCTTGCTaGGTCATTAGAGTCCCCACCCTCTGTTCCTGTTCC +
Preference number: 4 (lower is better)
Translates to: LSPWPQHILSSC*VIRVPTLCSCS
Trigger: GGAACAGGAACAGAGGGTGGGGACTCTAATGACCAAGCAAGAGGACAGAATGTGCTGAGGCCAAGGGGACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR TCA 90 bp CTTTCTTTTTCAGGCCTAGGAAATGGCCTAAAATCCCTTGACAATAACACGGGTTGGCGGTGGCAGCATTaGCCGTGGCAGAAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: LSFSGLGNGLKSLDNNTGWRWQH*PWQKLP
Trigger: AGGCAGCTTCTGCCACGGTCAATGCTGCCACCGCCA...ACCCGTGTTATTGTCAAGGGATTTTAGGCCATTTCCTAGGCCTGAAAAAGAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
3UTR CAA 72 bp CAGCACATCATGGCCTGCAAGCCTATGCCACAAAGGTaGAATTTCACAGCCCAGCAAAATCCCAGGATAGGG +
Preference number: 4 (lower is better)
Translates to: QHIMACKPMPQR*NFTAQQNPRIG
Trigger: CCCTATCCTGGGATTTTGCTGGGCTGTGAAATTCAACCTTTGTGGCATAGGCTTGCAGGCCATGATGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR CCA 90 bp GCAAGTACCCTTTCTTTTTCAGGCCTAGGAAATGGCCTAAAATCCCTTGACAATCCTGGAGAAGCTCCGTaGCCAAGCAGCAGAAAGAGG +
Preference number: 4 (lower is better)
Translates to: ASTLSFSGLGNGLKSLDNPGEAP*PSSRKR
Trigger: CCTCTTTCTGCTGCTTGGCCACGGAGCTTCTCCAGG...ATTGTCAAGGGATTTTAGGCCATTTCCTAGGCCTGAAAAAGAAAGGGTACTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR CCA 90 bp CTTTCTTTTTCAGGCCTAGGAAATGGCCTAAAATCCCTTGACAATAACACGGGTAGCCCTGCCAGCCACTaGAACTTGTCCTCACCCAAC +
Preference number: 4 (lower is better)
Translates to: LSFSGLGNGLKSLDNNTGSPASH*NLSSPN
Trigger: GTTGGGTGAGGACAAGTTCCAGTGGCTGGCAGGGCT...ACCCGTGTTATTGTCAAGGGATTTTAGGCCATTTCCTAGGCCTGAAAAAGAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR GCA 90 bp CTTTCTTTTTCAGGCCTAGGAAATGGCCTAAAATCCCTTGACAATAACACGGGTCAGCTGATCTCGCACTaGCAGGTAGAAGGCGAAGGA +
Preference number: 4 (lower is better)
Translates to: LSFSGLGNGLKSLDNNTGQLISH*QVEGEG
Trigger: TCCTTCGCCTTCTACCTGGCAGTGCGAGATCAGCTG...ACCCGTGTTATTGTCAAGGGATTTTAGGCCATTTCCTAGGCCTGAAAAAGAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS GCA 90 bp AGAGGCACTCGGGGCGTGCGAGCTCACAGGCCACATGCAGCGACGTaGCACCGCCCTCCACGCGGCTGCAGCCACGGCGGTCGAGGAGGC +
Preference number: 5 (lower is better)
Translates to: RGTRGVRAHRPHAAT*HRPPRGCSHGGRGG
Trigger: GCCTCCTCGACCGCCGTGGCTGCAGCCGCGTGGAGGGCGGTGGCACGTCGCTGCATGTGGCCTGTGAGCTCGCACGCCCCGAGTGCCTCT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 90 bp GCTCACAGGCCACATGCAGCGACGTGCCACCGCCCTCCACGCGGCTaGAGCCACGGCGGTCGAGGAGGCGCACGCGCTCTTCCACTGGGA +
Preference number: 5 (lower is better)
Translates to: AHRPHAATCHRPPRG*SHGGRGGARALPLG
Trigger: TCCCAGTGGAAGAGCGCGTGCGCCTCCTCGACCGCCGTGGCTGCAGCCGCGTGGAGGGCGGTGGCACGTCGCTGCATGTGGCCTGTGAGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 90 bp AGCAGCAGAAAGAGGCACTCGGGGCGTGCGAGCTCACAGGCCACATaGAGCGACGTGCCACCGCCCTCCACGCGGCTGCAGCCACGGCGG +
Preference number: 5 (lower is better)
Translates to: SSRKRHSGRASSQAT*SDVPPPSTRLQPRR
Trigger: CCGCCGTGGCTGCAGCCGCGTGGAGGGCGGTGGCACGTCGCTGCATGTGGCCTGTGAGCTCGCACGCCCCGAGTGCCTCTTTCTGCTGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 90 bp GCGGCTGCAGCCACGGCGGTCGAGGAGGCGCACGCGCTCTTCCACTaGGAAGTCCTGCACCGTTCGCAGGATGCGCCGCAGGATGCCCAC +
Preference number: 5 (lower is better)
Translates to: AAAATAVEEAHALFH*EVLHRSQDAPQDAH
Trigger: GTGGGCATCCTGCGGCGCATCCTGCGAACGGTGCAGGACTTCCCAGTGGAAGAGCGCGTGCGCCTCCTCGACCGCCGTGGCTGCAGCCGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 90 bp GGCGCACGCGCTCTTCCACTGGGAAGTCCTGCACCGTTCGCAGGATaGGCCGCAGGATGCCCACGCGGTTGTAGCGCACCGCCAGCGCCA +
Preference number: 5 (lower is better)
Translates to: GARALPLGSPAPFAG*AAGCPRGCSAPPAP
Trigger: TGGCGCTGGCGGTGCGCTACAACCGCGTGGGCATCCTGCGGCGCATCCTGCGAACGGTGCAGGACTTCCCAGTGGAAGAGCGCGTGCGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 90 bp CTTCCACTGGGAAGTCCTGCACCGTTCGCAGGATGCGCCGCAGGATaGCCACGCGGTTGTAGCGCACCGCCAGCGCCACGTGAGGCCCAG +
Preference number: 5 (lower is better)
Translates to: LPLGSPAPFAGCAAG*PRGCSAPPAPREAQ
Trigger: CTGGGCCTCACGTGGCGCTGGCGGTGCGCTACAACCGCGTGGGCATCCTGCGGCGCATCCTGCGAACGGTGCAGGACTTCCCAGTGGAAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 90 bp GGCCTGGTGTCCCACGGCATGCTGGCCTCCGGGAGTCTCAAAGCATaGGTCACACCACCCCAGACCAACCAAGCCGCGCGACCCTGTCCC +
Preference number: 5 (lower is better)
Translates to: GLVSHGMLASGSLKA*VTPPQTNQAARPCP
Trigger: GGGACAGGGTCGCGCGGCTTGGTTGGTCTGGGGTGGTGTGACCCATGCTTTGAGACTCCCGGAGGCCAGCATGCCGTGGGACACCAGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142012.2
CDS-3UTR CAA 90 bp CACAGTCTGGCTCCCATTCAACACCTGCTAGAGCTGCCTGCTCAGCTCTGCTGGCCCTCGGGCCCTCCGTaGGCGCTGCGTCCAGGCCTG +
Preference number: 5 (lower is better)
Translates to: HSLAPIQHLLELPAQLCWPSGPP*ALRPGL
Trigger: CAGGCCTGGACGCAGCGCCAACGGAGGGCCCGAGGG...CCAGCAGAGCTGAGCAGGCAGCTCTAGCAGGTGTTGAATGGGAGCCAGACTGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS GCA 90 bp AAGGCCTCCGGGAAGCGGCCAGGTGAGATAGTGGTGACCAACACCTaGATGGCACGGACAAAGAGGGAGGGTGGCGCCAGCCCTGCCAGC +
Preference number: 5 (lower is better)
Translates to: KASGKRPGEIVVTNT*MARTKREGGASPAS
Trigger: GCTGGCAGGGCTGGCGCCACCCTCCCTCTTTGTCCGTGCCATGCAGGTGTTGGTCACCACTATCTCACCTGGCCGCTTCCCGGAGGCCTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS TCA 90 bp CCAAACTGGCAGCTGATCTCGCACTGCCAGGTAGAAGGCGAAGGATaGCTTCCGGCACTGCTTCTGCACCCGCAAGCGAGCTGCGCCGGG +
Preference number: 5 (lower is better)
Translates to: PNWQLISHCQVEGEG*LPALLLHPQASCAG
Trigger: CCCGGCGCAGCTCGCTTGCGGGTGCAGAAGCAGTGCCGGAAGTCATCCTTCGCCTTCTACCTGGCAGTGCGAGATCAGCTGCCAGTTTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 90 bp ATGGCACGGACAAAGAGGGAGGGTGGCGCCAGCCCTGCCAGCCACTaGAACTTGTCCTCACCCAACAACCGCTGCCAGCGTAGCTGGTCT +
Preference number: 5 (lower is better)
Translates to: MARTKREGGASPASH*NLSSPNNRCQRSWS
Trigger: AGACCAGCTACGCTGGCAGCGGTTGTTGGGTGAGGACAAGTTCCAGTGGCTGGCAGGGCTGGCGCCACCCTCCCTCTTTGTCCGTGCCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS TCA 90 bp CCCGGGGTGTACAGTACTAGCAGGTCAAGCAGCAGCAGGCGGCGCTaGCACACCTCCTCAGACGAAGTGGTGTTGGCGGTGGCAGCATTG +
Preference number: 5 (lower is better)
Translates to: PGVYSTSRSSSSRRR*HTSSDEVVLAVAAL
Trigger: CAATGCTGCCACCGCCAACACCACTTCGTCTGAGGAGGTGTGTCAGCGCCGCCTGCTGCTGCTTGACCTGCTAGTACTGTACACCCCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS-3UTR CAA 90 bp CAAAGCCTGTGGGGAAGCAGGTGGGGAAACCCAAGGCTAGCACCTGCCAAGTCCTTGGCGGTGGCAGCATaGACCGTGGCAGAAGCTGCC +
Preference number: 5 (lower is better)
Translates to: QSLWGSRWGNPRLAPAKSLAVAA*TVAEAA
Trigger: GGCAGCTTCTGCCACGGTCAATGCTGCCACCGCCAA...GGACTTGGCAGGTGCTAGCCTTGGGTTTCCCCACCTGCTTCCCCACAGGCTTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS GCA 90 bp GCCAGCCCTGCCAGCCACTGGAACTTGTCCTCACCCAACAACCGCTaGCAGCGTAGCTGGTCTCCTAGCAGTTCACATCGAGCTGGACCT +
Preference number: 5 (lower is better)
Translates to: ASPASHWNLSSPNNR*QRSWSPSSSHRAGP
Trigger: AGGTCCAGCTCGATGTGAACTGCTAGGAGACCAGCTACGCTGGCAGCGGTTGTTGGGTGAGGACAAGTTCCAGTGGCTGGCAGGGCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 90 bp AATAGGCCGCAGCGCGCCCCCGCTCATCACAGTGGAAGGCTTCGCTaGCACGTATGTCCTCGAGTAGCCAAACTGGCAGCTGATCTCGCA +
Preference number: 5 (lower is better)
Translates to: NRPQRAPAHHSGRLR*HVCPRVAKLAADLA
Trigger: TGCGAGATCAGCTGCCAGTTTGGCTACTCGAGGACATACGTGCCAGCGAAGCCTTCCACTGTGATGAGCGGGGGCGCGCTGCGGCCTATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 90 bp AATGGTGTAAAGCCACTGCCATCTCGAAGGCCTGGAGAAGCTCCGTaGCCAAGCAGCAGAAAGAGGCACTCGGGGCGTGCGAGCTCACAG +
Preference number: 5 (lower is better)
Translates to: NGVKPLPSRRPGEAP*PSSRKRHSGRASSQ
Trigger: CTGTGAGCTCGCACGCCCCGAGTGCCTCTTTCTGCTGCTTGGCCACGGAGCTTCTCCAGGCCTTCGAGATGGCAGTGGCTTTACACCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 90 bp CAACAGCAGCTCCAATGGTGTAAAGCCACTGCCATCTCGAAGGCCTaGAGAAGCTCCGTGGCCAAGCAGCAGAAAGAGGCACTCGGGGCG +
Preference number: 5 (lower is better)
Translates to: QQQLQWCKATAISKA*RSSVAKQQKEALGA
Trigger: CGCCCCGAGTGCCTCTTTCTGCTGCTTGGCCACGGAGCTTCTCCAGGCCTTCGAGATGGCAGTGGCTTTACACCATTGGAGCTGCTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS-3UTR CAA 90 bp CTCAGCTGTCACCTTCCCCGGGACTCTAGGTCCTCACCCTTATCCTTGGCTGAGGCCAGCCACTGGAACTaGTCCTCACCCAACAACCGC +
Preference number: 5 (lower is better)
Translates to: LSCHLPRDSRSSPLSLAEASHWN*SSPNNR
Trigger: GCGGTTGTTGGGTGAGGACAAGTTCCAGTGGCTGGC...CTCAGCCAAGGATAAGGGTGAGGACCTAGAGTCCCGGGGAAGGTGACAGCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS-3UTR CAA 90 bp CTGACTGAGGGTAAAAGGGCCAACTCCAGGCTGGGGTGGAGAAGCAATGATTCAGTAGTGTGCATAGGCTaGGTGGTCGTGCACAAGCGC +
Preference number: 5 (lower is better)
Translates to: LTEGKRANSRLGWRSNDSVVCIG*VVVHKR
Trigger: GCGCTTGTGCACGACCACCAAGCCTATGCACACTAC...TGAATCATTGCTTCTCCACCCCAGCCTGGAGTTGGCCCTTTTACCCTCAGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128353.8
CDS GCA 72 bp CGGGGCGTGCGAGCTCACAGGCCACATGCAGCGACGTaGCACCGCCCTCCACGCGGCTGCAGCCACGGCGGT +
Preference number: 6 (lower is better)
Translates to: RGVRAHRPHAAT*HRPPRGCSHGG
Trigger: ACCGCCGTGGCTGCAGCCGCGTGGAGGGCGGTGGCACGTCGCTGCATGTGGCCTGTGAGCTCGCACGCCCCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 72 bp GAGCTGCGCCGGGACCCTCGGGCCCTCCGTTGGCGCTaGGTCCAGGCCTGGTGTCCCACGGCATGCTGGCCT +
Preference number: 6 (lower is better)
Translates to: ELRRDPRALRWR*VQAWCPTACWP
Trigger: AGGCCAGCATGCCGTGGGACACCAGGCCTGGACGCAGCGCCAACGGAGGGCCCGAGGGTCCCGGCGCAGCTC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142012.2
CDS GCA 72 bp CCACATGCAGCGACGTGCCACCGCCCTCCACGCGGCTaGAGCCACGGCGGTCGAGGAGGCGCACGCGCTCTT +
Preference number: 6 (lower is better)
Translates to: PHAATCHRPPRG*SHGGRGGARAL
Trigger: AAGAGCGCGTGCGCCTCCTCGACCGCCGTGGCTGCAGCCGCGTGGAGGGCGGTGGCACGTCGCTGCATGTGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 72 bp AAGAGGCACTCGGGGCGTGCGAGCTCACAGGCCACATaGAGCGACGTGCCACCGCCCTCCACGCGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: KRHSGRASSQAT*SDVPPPSTRLQ
Trigger: CTGCAGCCGCGTGGAGGGCGGTGGCACGTCGCTGCATGTGGCCTGTGAGCTCGCACGCCCCGAGTGCCTCTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 72 bp GCCACGGCGGTCGAGGAGGCGCACGCGCTCTTCCACTaGGAAGTCCTGCACCGTTCGCAGGATGCGCCGCAG +
Preference number: 6 (lower is better)
Translates to: ATAVEEAHALFH*EVLHRSQDAPQ
Trigger: CTGCGGCGCATCCTGCGAACGGTGCAGGACTTCCCAGTGGAAGAGCGCGTGCGCCTCCTCGACCGCCGTGGC
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 72 bp GGAAGTCCTGCACCGTTCGCAGGATGCGCCGCAGGATaGCCACGCGGTTGTAGCGCACCGCCAGCGCCACGT +
Preference number: 6 (lower is better)
Translates to: GSPAPFAGCAAG*PRGCSAPPAPR
Trigger: ACGTGGCGCTGGCGGTGCGCTACAACCGCGTGGGCATCCTGCGGCGCATCCTGCGAACGGTGCAGGACTTCC
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 72 bp TCGAGGAGGCGCACGCGCTCTTCCACTGGGAAGTCCTaGACCGTTCGCAGGATGCGCCGCAGGATGCCCACG +
Preference number: 6 (lower is better)
Translates to: SRRRTRSSTGKS*TVRRMRRRMPT
Trigger: CGTGGGCATCCTGCGGCGCATCCTGCGAACGGTGCAGGACTTCCCAGTGGAAGAGCGCGTGCGCCTCCTCGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 72 bp GCTCTTCCACTGGGAAGTCCTGCACCGTTCGCAGGATaGGCCGCAGGATGCCCACGCGGTTGTAGCGCACCG +
Preference number: 6 (lower is better)
Translates to: ALPLGSPAPFAG*AAGCPRGCSAP
Trigger: CGGTGCGCTACAACCGCGTGGGCATCCTGCGGCGCATCCTGCGAACGGTGCAGGACTTCCCAGTGGAAGAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CAA 72 bp AGGGAGGGTGGCGCCAGCCCTGCCAGCCACTGGAACTaGTCCTCACCCAACAACCGCTGCCAGCGTAGCTGG +
Preference number: 6 (lower is better)
Translates to: REGGASPASHWN*SSPNNRCQRSW
Trigger: CCAGCTACGCTGGCAGCGGTTGTTGGGTGAGGACAAGTTCCAGTGGCTGGCAGGGCTGGCGCCACCCTCCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS TCA 72 bp GACCGTGGCAGAAGCTGCCTCAGCCTTAGTGGGGGCTaGGCTGGCGTCCTGGTTCAGCTGGCGCAACAGCAG +
Preference number: 6 (lower is better)
Translates to: DRGRSCLSLSGG*AGVLVQLAQQQ
Trigger: CTGCTGTTGCGCCAGCTGAACCAGGACGCCAGCTCAGCCCCCACTAAGGCTGAGGCAGCTTCTGCCACGGTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CAA 90 bp CGGACAAAGAGGGAGGGTGGCGCCAGCCCTGCCAGCCACTGGAACTaGTCCTCACCCAACAACCGCTGCCAGCGTAGCTGGTCTCCTAGC +
Preference number: 6 (lower is better)
Translates to: RTKREGGASPASHWN*SSPNNRCQRSWSPS
Trigger: GCTAGGAGACCAGCTACGCTGGCAGCGGTTGTTGGGTGAGGACAAGTTCCAGTGGCTGGCAGGGCTGGCGCCACCCTCCCTCTTTGTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 72 bp CATGGCACGGACAAAGAGGGAGGGTGGCGCCAGCCCTaGCAGCCACTGGAACTTGTCCTCACCCAACAACCG +
Preference number: 6 (lower is better)
Translates to: HGTDKEGGWRQP*QPLELVLTQQP
Trigger: CGGTTGTTGGGTGAGGACAAGTTCCAGTGGCTGGCAGGGCTGGCGCCACCCTCCCTCTTTGTCCGTGCCATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 72 bp GGGAAGCGGCCAGGTGAGATAGTGGTGACCAACACCTaGATGGCACGGACAAAGAGGGAGGGTGGCGCCAGC +
Preference number: 6 (lower is better)
Translates to: GKRPGEIVVTNT*MARTKREGGAS
Trigger: GCTGGCGCCACCCTCCCTCTTTGTCCGTGCCATGCAGGTGTTGGTCACCACTATCTCACCTGGCCGCTTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 72 bp ACAAAGAGGGAGGGTGGCGCCAGCCCTGCCAGCCACTaGAACTTGTCCTCACCCAACAACCGCTGCCAGCGT +
Preference number: 6 (lower is better)
Translates to: TKREGGASPASH*NLSSPNNRCQR
Trigger: ACGCTGGCAGCGGTTGTTGGGTGAGGACAAGTTCCAGTGGCTGGCAGGGCTGGCGCCACCCTCCCTCTTTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 72 bp CAGCGCGCCCCCGCTCATCACAGTGGAAGGCTTCGCTaGCACGTATGTCCTCGAGTAGCCAAACTGGCAGCT +
Preference number: 6 (lower is better)
Translates to: QRAPAHHSGRLR*HVCPRVAKLAA
Trigger: AGCTGCCAGTTTGGCTACTCGAGGACATACGTGCCAGCGAAGCCTTCCACTGTGATGAGCGGGGGCGCGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 72 bp GCTGCCTCAGCCTTAGTGGGGGCTGAGCTGGCGTCCTaGTTCAGCTGGCGCAACAGCAGCTCCAATGGTGTA +
Preference number: 6 (lower is better)
Translates to: AASALVGAELAS*FSWRNSSSNGV
Trigger: TACACCATTGGAGCTGCTGTTGCGCCAGCTGAACCAGGACGCCAGCTCAGCCCCCACTAAGGCTGAGGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS TCA 72 bp CAGCTGATCTCGCACTGCCAGGTAGAAGGCGAAGGATaGCTTCCGGCACTGCTTCTGCACCCGCAAGCGAGC +
Preference number: 6 (lower is better)
Translates to: QLISHCQVEGEG*LPALLLHPQAS
Trigger: GCTCGCTTGCGGGTGCAGAAGCAGTGCCGGAAGTCATCCTTCGCCTTCTACCTGGCAGTGCGAGATCAGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 72 bp GCCTTAGTGGGGGCTGAGCTGGCGTCCTGGTTCAGCTaGCGCAACAGCAGCTCCAATGGTGTAAAGCCACTG +
Preference number: 6 (lower is better)
Translates to: ALVGAELASWFS*RNSSSNGVKPL
Trigger: CAGTGGCTTTACACCATTGGAGCTGCTGTTGCGCCAGCTGAACCAGGACGCCAGCTCAGCCCCCACTAAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CAA 72 bp ACCTCCTCAGACGAAGTGGTGTTGGCGGTGGCAGCATaGACCGTGGCAGAAGCTGCCTCAGCCTTAGTGGGG +
Preference number: 6 (lower is better)
Translates to: TSSDEVVLAVAA*TVAEAASALVG
Trigger: CCCCACTAAGGCTGAGGCAGCTTCTGCCACGGTCAATGCTGCCACCGCCAACACCACTTCGTCTGAGGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS TCA 72 bp TACAGTACTAGCAGGTCAAGCAGCAGCAGGCGGCGCTaGCACACCTCCTCAGACGAAGTGGTGTTGGCGGTG +
Preference number: 6 (lower is better)
Translates to: YSTSRSSSSRRR*HTSSDEVVLAV
Trigger: CACCGCCAACACCACTTCGTCTGAGGAGGTGTGTCAGCGCCGCCTGCTGCTGCTTGACCTGCTAGTACTGTA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 72 bp GGCGTCCTGGTTCAGCTGGCGCAACAGCAGCTCCAATaGTGTAAAGCCACTGCCATCTCGAAGGCCTGGAGA +
Preference number: 6 (lower is better)
Translates to: GVLVQLAQQQLQ*CKATAISKAWR
Trigger: TCTCCAGGCCTTCGAGATGGCAGTGGCTTTACACCATTGGAGCTGCTGTTGCGCCAGCTGAACCAGGACGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS GCA 72 bp GCCAGCCACTGGAACTTGTCCTCACCCAACAACCGCTaGCAGCGTAGCTGGTCTCCTAGCAGTTCACATCGA +
Preference number: 6 (lower is better)
Translates to: ASHWNLSSPNNR*QRSWSPSSSHR
Trigger: TCGATGTGAACTGCTAGGAGACCAGCTACGCTGGCAGCGGTTGTTGGGTGAGGACAAGTTCCAGTGGCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2
CDS CCA 72 bp CTCCAATGGTGTAAAGCCACTGCCATCTCGAAGGCCTaGAGAAGCTCCGTGGCCAAGCAGCAGAAAGAGGCA +
Preference number: 6 (lower is better)
Translates to: LQWCKATAISKA*RSSVAKQQKEA
Trigger: TGCCTCTTTCTGCTGCTTGGCCACGGAGCTTCTCCAGGCCTTCGAGATGGCAGTGGCTTTACACCATTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043459.13
ENSMUST00000128353.8
ENSMUST00000135131.2
ENSMUST00000140788.8
ENSMUST00000142012.2
ENSMUST00000148765.2