Pregenerated sensors for ANKRD49 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031931Ensembl transcript IDs: ENSMUST00000034406.4, ENSMUST00000214456.2, ENSMUST00000216037.2, ENSMUST00000216372.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTCAAGTGGGAAGAACTGAGTCTGAGAGTGTTTTGGATGACATTTaGCTCCTCGCAAGACTGTGGGGAGTAAACAAGTGCAGTAAGACA | + |
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Preference number: 1 (lower is better) Translates to: GQVGRTESESVLDDI*LLARLWGVNKCSKT Trigger: TGTCTTACTGCACTTGTTTACTCCCCACAGTCTTGCGAGGAGGCAAATGTCATCCAAAACACTCTCAGACTCAGTTCTTCCCACTTGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR TCA 90 bp | CTGGGCTGGTCTATGGACCAGACAGAGGACACTGTGCTCTGGGATTaGAAAGCTATCATACACTGCAAAACACTTCTGGTTTTGACTTAC | + |
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Preference number: 1 (lower is better) Translates to: LGWSMDQTEDTVLWD*KAIIHCKTLLVLTY Trigger: GTAAGTCAAAACCAGAAGTGTTTTGCAGTGTATGATAGCTTTTCAATCCCAGAGCACAGTGTCCTCTGTCTGGTCCATAGACCAGCCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR TCA 90 bp | AAAATGAGGGCCGTGGGGATAGTGCTGGACATTTCCTGGAACTTATaGGTAATGCCTAATCCAGCAAGAGAGAAAGGTGAACACTTCAGA | + |
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Preference number: 1 (lower is better) Translates to: KMRAVGIVLDISWNL*VMPNPAREKGEHFR Trigger: TCTGAAGTGTTCACCTTTCTCTCTTGCTGGATTAGGCATTACTCATAAGTTCCAGGAAATGTCCAGCACTATCCCCACGGCCCTCATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR GCA 90 bp | ATCTGGGACTTGAGCCCAGGTGATGGTGCCAACCACATCTGGATATaGATCCTTTCTTCAGTTAAACTTTTTGAGAAACTCCCTTCCAGA | + |
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Preference number: 1 (lower is better) Translates to: IWDLSPGDGANHIWI*ILSSVKLFEKLPSR Trigger: TCTGGAAGGGAGTTTCTCAAAAAGTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGCTCAAGTCCCAGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR CCA 90 bp | TATTTAATCTGGGACTTGAGCCCAGGTGATGGTGCCAACCACATCTaGATATGCATCCTTTCTTCAGTTAAACTTTTTGAGAAACTCCCT | + |
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Preference number: 1 (lower is better) Translates to: YLIWDLSPGDGANHI*ICILSSVKLFEKLP Trigger: AGGGAGTTTCTCAAAAAGTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGCTCAAGTCCCAGATTAAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR CCA 90 bp | GCTATCACATTATCCTACTCTAATAAATGCCTACTGTCCCATACCTaGGCCCTAGATGAACAAAGGGCTTATCTATATAGTTTATATGTC | + |
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Preference number: 1 (lower is better) Translates to: AITLSYSNKCLLSHT*ALDEQRAYLYSLYV Trigger: GACATATAAACTATATAGATAAGCCCTTTGTTCATCTAGGGCCCAGGTATGGGACAGTAGGCATTTATTAGAGTAGGATAATGTGATAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR CCA 90 bp | CATACACTGCAAAACACTTCTGGTTTTGACTTACTAACATGGATATaGGAGAACTTAGTAAAGTTAAGTACAAATGGTCAAGTGGGAAGA | + |
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Preference number: 1 (lower is better) Translates to: HTLQNTSGFDLLTWI*ENLVKLSTNGQVGR Trigger: TCTTCCCACTTGACCATTTGTACTTAACTTTACTAAGTTCTCCCATATCCATGTTAGTAAGTCAAAACCAGAAGTGTTTTGCAGTGTATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR GCA 90 bp | TTTATAATTACCCCCAAACATCTAGAGCCAGCTTATAACATAATGTaGACTTTCATATACACTACTTCATGTGGCACTCCTATAAATGAG | + |
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Preference number: 1 (lower is better) Translates to: FIITPKHLEPAYNIM*TFIYTTSCGTPINE Trigger: CTCATTTATAGGAGTGCCACATGAAGTAGTGTATATGAAAGTGCACATTATGTTATAAGCTGGCTCTAGATGTTTGGGGGTAATTATAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR-3UTR TCA 90 bp | AGCAGCAAGGTGCAAAGGGGTCAAAAGGCCTTTCGTTTGGGCGTTGATGTCTGCCTTGGAAGAAAGCTGTaGTGCGCACAACAGAACTTC | + |
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Preference number: 2 (lower is better) Translates to: SSKVQRGQKAFRLGVDVCLGRKL*CAQQNF Trigger: GAAGTTCTGTTGTGCGCATCACAGCTTTCTTCCAAG...GCAGACATCAACGCCCAAACGAAAGGCCTTTTGACCCCTTTGCACCTTGCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR-3UTR TCA 90 bp | GCCCAGGTGATGGTGCCAACCACATCTGGATATGCATCCTTTCTTCAGTTAAACCCTCTCAAATACATGTaGCATCAAGGTCGGGCAGCT | + |
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Preference number: 2 (lower is better) Translates to: AQVMVPTTSGYASFLQLNPLKYM*HQGRAA Trigger: AGCTGCCCGACCTTGATGTCACATGTATTTGAGAGG...GTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR GCA 90 bp | CTCAGGAATATACAGGGGTTGAGAGTCCATCAAAAACTATGTTGCAGGCACCAACACTGCATGAACATCTaGCCCCTTAGCCACCAGCTC | + |
|
Preference number: 2 (lower is better) Translates to: LRNIQGLRVHQKLCCRHQHCMNI*PLSHQL Trigger: GAGCTGGTGGCTAAGGGGGCAGATGTTCATGCAGTG...TTGGTGCCTGCAACATAGTTTTTGATGGACTCTCAACCCCTGTATATTCCTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR-3UTR CCA 90 bp | TCAAGTTCTCATGTTCAGAAGACCCCTCAGGAATATACAGGGGTTGAGAGTCCAGTCGGGCAGCTTACTTaGAAGAAAGCTGTGATGCGC | + |
|
Preference number: 2 (lower is better) Translates to: SSSHVQKTPQEYTGVESPVGQLT*KKAVMR Trigger: GCGCATCACAGCTTTCTTCCAAGTAAGCTGCCCGAC...TGGACTCTCAACCCCTGTATATTCCTGAGGGGTCTTCTGAACATGAGAACTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR TCA 90 bp | GCCCAGGTGATGGTGCCAACCACATCTGGATATGCATCCTTTCTTCAGTTAAACACTGTGCTCTGGGATTaGAAAGCTATCATACACTGC | + |
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Preference number: 2 (lower is better) Translates to: AQVMVPTTSGYASFLQLNTVLWD*KAIIHC Trigger: GCAGTGTATGATAGCTTTTCAATCCCAGAGCACAGT...GTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR-3UTR CCA 90 bp | TGCCTAATCCAGCAAGAGAGAAAGGTGAACACTTCAGAGGGCAGTTTTAATCTTGTCGGGCAGCTTACTTaGAAGAAAGCTGTGATGCGC | + |
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Preference number: 2 (lower is better) Translates to: CLIQQERKVNTSEGSFNLVGQLT*KKAVMR Trigger: GCGCATCACAGCTTTCTTCCAAGTAAGCTGCCCGAC...AAGATTAAAACTGCCCTCTGAAGTGTTCACCTTTCTCTCTTGCTGGATTAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAGCAAGGTGCAAAGGGGTCAAAAGGCCTTTCGTTTGGGCGTTGATGTCTGCCTGCTTTTCTCAGAATaGCCTACATCTTCAAAAACA | + |
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Preference number: 2 (lower is better) Translates to: SSKVQRGQKAFRLGVDVCLLFSE*PTSSKT Trigger: TGTTTTTGAAGATGTAGGCCATTCTGAGAAAAGCAG...GCAGACATCAACGCCCAAACGAAAGGCCTTTTGACCCCTTTGCACCTTGCTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR-3UTR CCA 90 bp | CTCAGGAATATACAGGGGTTGAGAGTCCATCAAAAACTATGTTGCAGGCACCAACTACTGTCCCATACCTaGGCCCTAGATGAACAAAGG | + |
|
Preference number: 2 (lower is better) Translates to: LRNIQGLRVHQKLCCRHQLLSHT*ALDEQR Trigger: CCTTTGTTCATCTAGGGCCCAGGTATGGGACAGTAG...TTGGTGCCTGCAACATAGTTTTTGATGGACTCTCAACCCCTGTATATTCCTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR-3UTR TCA 90 bp | TTTTCTGTTTTAAGAAAGCCTGAGCCACATGATATTCTGGTCCCATATGACAATGGACTTGAGCCCAGGTaGTGGTGCCAACCACATCTG | + |
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Preference number: 2 (lower is better) Translates to: FSVLRKPEPHDILVPYDNGLEPR*WCQPHL Trigger: CAGATGTGGTTGGCACCATCACCTGGGCTCAAGTCC...ATTGTCATATGGGACCAGAATATCATGTGGCTCAGGCTTTCTTAAAACAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCAGGTGATGGTGCCAACCACATCTGGATATGCATCCTTTCTTCAGTTAAACTTGTGCATGTCTAAATaGAGACACTGTCTGGCCATA | + |
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Preference number: 2 (lower is better) Translates to: AQVMVPTTSGYASFLQLNLCMSK*RHCLAI Trigger: TATGGCCAGACAGTGTCTCCATTTAGACATGCACAA...GTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR CAA 90 bp | CAAACACTGGTTCTTGGCTTGTTTTCTCTTTATTTAATCTGGGACTaGAGCCCAGGTGATGGTGCCAACCACATCTGGATATGCATCCTT | + |
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Preference number: 2 (lower is better) Translates to: QTLVLGLFSLYLIWD*SPGDGANHIWICIL Trigger: AAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGCTCAAGTCCCAGATTAAATAAAGAGAAAACAAGCCAAGAACCAGTGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216372.2 |
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| 3UTR CAA 90 bp | TTAAGTACAAATGGTCAAGTGGGAAGAACTGAGTCTGAGAGTGTTTaGGATGACATTTGCCTCCTCGCAAGACTGTGGGGAGTAAACAAG | + |
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Preference number: 2 (lower is better) Translates to: LSTNGQVGRTESESV*DDICLLARLWGVNK Trigger: CTTGTTTACTCCCCACAGTCTTGCGAGGAGGCAAATGTCATCCAAAACACTCTCAGACTCAGTTCTTCCCACTTGACCATTTGTACTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCAGGTGATGGTGCCAACCACATCTGGATATGCATCCTTTCTTCAGTTAAACCTTTTTCCTTTGTCATaGCTTGTAGAAAATGAGGGC | + |
|
Preference number: 2 (lower is better) Translates to: AQVMVPTTSGYASFLQLNLFPLS*LVENEG Trigger: GCCCTCATTTTCTACAAGCCATGACAAAGGAAAAAG...GTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR CAA 90 bp | GTTCACTACCTAGTGAGGAAACAGAGACAAACACTGGTTCTTGGCTaGTTTTCTCTTTATTTAATCTGGGACTTGAGCCCAGGTGATGGT | + |
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Preference number: 2 (lower is better) Translates to: VHYLVRKQRQTLVLG*FSLYLIWDLSPGDG Trigger: ACCATCACCTGGGCTCAAGTCCCAGATTAAATAAAGAGAAAACAAGCCAAGAACCAGTGTTTGTCTCTGTTTCCTCACTAGGTAGTGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216372.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTATTTAATCTGGGACTTGAGCCCAGGTGATGGTGCCAACCACATCTGGATAATGCAAGTTGCCTTCTaGCCTGTCAAAACTTGTATT | + |
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Preference number: 2 (lower is better) Translates to: LYLIWDLSPGDGANHIWIMQVAF*PVKTCI Trigger: AATACAAGTTTTGACAGGGCAGAAGGCAACTTGCAT...TATCCAGATGTGGTTGGCACCATCACCTGGGCTCAAGTCCCAGATTAAATAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCAAGAGAGAAAGGTGAACACTTCAGAGGGCAGTTTTAATCTTTTGGACCAAAAGAGACAGTCATCATaGTGGGGAAGGAACAGCATA | + |
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Preference number: 2 (lower is better) Translates to: QQERKVNTSEGSFNLLDQKRQSS*WGRNSI Trigger: TATGCTGTTCCTTCCCCACCATGATGACTGTCTCTT...TTGGTCCAAAAGATTAAAACTGCCCTCTGAAGTGTTCACCTTTCTCTCTTGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000216372.2 |
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| 3UTR-3UTR TCA 90 bp | CACATCTGGATATGCATCCTTTCTTCAGTTAAACTTTTTGAGAAACTCCCTTCCCTTGGAAGAAAGCTGTaGTGCGCACAACAGAACTTC | + |
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Preference number: 2 (lower is better) Translates to: HIWICILSSVKLFEKLPSLGRKL*CAQQNF Trigger: GAAGTTCTGTTGTGCGCATCACAGCTTTCTTCCAAG...GGAAGGGAGTTTCTCAAAAAGTTTAACTGAAGAAAGGATGCATATCCAGATGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCATGTTCAGAAGACCCCTCAGGAATATACAGGGGTTGAGAGTCCATCAAAAATTTCCTGGAACTTATaGGTAATGCCTAATCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: SHVQKTPQEYTGVESPSKISWNL*VMPNPA Trigger: TGCTGGATTAGGCATTACTCATAAGTTCCAGGAAAT...TTTTGATGGACTCTCAACCCCTGTATATTCCTGAGGGGTCTTCTGAACATGAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR CAA 90 bp | AACACTTCAGAGGGCAGTTTTAATCTTTTGGACCAAGAAACAGTTTaGTGCATGTCTAAATGGAGACACTGTCTGGCCATAACAGTAAGG | + |
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Preference number: 2 (lower is better) Translates to: NTSEGSFNLLDQETV*CMSKWRHCLAITVR Trigger: CCTTACTGTTATGGCCAGACAGTGTCTCCATTTAGACATGCACAAAACTGTTTCTTGGTCCAAAAGATTAAAACTGCCCTCTGAAGTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR CAA 90 bp | CAGCAAGAGAGAAAGGTGAACACTTCAGAGGGCAGTTTTAATCTTTaGGACCAAGAAACAGTTTTGTGCATGTCTAAATGGAGACACTGT | + |
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Preference number: 2 (lower is better) Translates to: QQERKVNTSEGSFNL*DQETVLCMSKWRHC Trigger: ACAGTGTCTCCATTTAGACATGCACAAAACTGTTTCTTGGTCCAAAAGATTAAAACTGCCCTCTGAAGTGTTCACCTTTCTCTCTTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR GCA 90 bp | CTCAGGAATATACAGGGGTTGAGAGTCCATCAAAAACTATGTTGCAGGCACCAAATAAAAACCACACACTaGAGAAATCTCCACAGATGT | + |
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Preference number: 2 (lower is better) Translates to: LRNIQGLRVHQKLCCRHQIKTTH*RNLHRC Trigger: ACATCTGTGGAGATTTCTGCAGTGTGTGGTTTTTAT...TTGGTGCCTGCAACATAGTTTTTGATGGACTCTCAACCCCTGTATATTCCTGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR GCA 90 bp | GATGGTGCCAACCACATCTGGATATGCATCCTTTCTTCAGTTAAACTTTTTGAGAAGTTATATGCAAGTTaGCTTCTGCCCTGTCAAAAC | + |
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Preference number: 2 (lower is better) Translates to: DGANHIWICILSSVKLFEKLYAS*LLPCQN Trigger: GTTTTGACAGGGCAGAAGGCAACTTGCATATAACTT...CTCAAAAAGTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR GCA 90 bp | GAGAGAAAGGTGAACACTTCAGAGGGCAGTTTTAATCTTTTGGACCAAGAAACAAGAAGACAGCTAAACTaGACCAGTATGTTAAAGATG | + |
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Preference number: 2 (lower is better) Translates to: ERKVNTSEGSFNLLDQETRRQLN*TSMLKM Trigger: CATCTTTAACATACTGGTGCAGTTTAGCTGTCTTCT...TGTTTCTTGGTCCAAAAGATTAAAACTGCCCTCTGAAGTGTTCACCTTTCTCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR CCA 90 bp | AGAAAGGTGAACACTTCAGAGGGCAGTTTTAATCTTTTGGACCAAGAAACAGTTCTGCTTTTCTCAGAATaGCCTACATCTTCAAAAACA | + |
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Preference number: 2 (lower is better) Translates to: RKVNTSEGSFNLLDQETVLLFSE*PTSSKT Trigger: TGTTTTTGAAGATGTAGGCCATTCTGAGAAAAGCAG...AACTGTTTCTTGGTCCAAAAGATTAAAACTGCCCTCTGAAGTGTTCACCTTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR GCA 90 bp | TTTTCTGTTTTAAGAAAGCCTGAGCCACATGATATTCTGGTCCCATATGACAATAAAGCTATCATACACTaGAAAACACTTCTGGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: FSVLRKPEPHDILVPYDNKAIIH*KTLLVL Trigger: CAAAACCAGAAGTGTTTTGCAGTGTATGATAGCTTT...ATTGTCATATGGGACCAGAATATCATGTGGCTCAGGCTTTCTTAAAACAGAAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR CCA 72 bp | AGCACATCTTCTTCTCATGTTGCTGTGCACCATGTCTaGGCTGGTCTATGGACCAGACAGAGGACACTGTGC | + |
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Preference number: 3 (lower is better) Translates to: STSSSHVAVHHV*AGLWTRQRTLC Trigger: GCACAGTGTCCTCTGTCTGGTCCATAGACCAGCCCAGACATGGTGCACAGCAACATGAGAAGAAGATGTGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR CCA 72 bp | ATGGTCAAGTGGGAAGAACTGAGTCTGAGAGTGTTTTaGATGACATTTGCCTCCTCGCAAGACTGTGGGGAG | + |
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Preference number: 3 (lower is better) Translates to: MVKWEELSLRVF*MTFASSQDCGE Trigger: CTCCCCACAGTCTTGCGAGGAGGCAAATGTCATCCAAAACACTCTCAGACTCAGTTCTTCCCACTTGACCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR GCA 72 bp | GTCTGGGCTGGTCTATGGACCAGACAGAGGACACTGTaGTCTGGGATTGAAAAGCTATCATACACTGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: VWAGLWTRQRTL*SGIEKLSYTAK Trigger: TTTTGCAGTGTATGATAGCTTTTCAATCCCAGAGCACAGTGTCCTCTGTCTGGTCCATAGACCAGCCCAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR-3UTR CAA 90 bp | GAGAGAAAGGTGAACACTTCAGAGGGCAGTTTTAATCTTTTGGACCAAGAAACAGGTCGGGCAGCTTACTaGGAAGAAAGCTGTGATGCG | + |
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Preference number: 3 (lower is better) Translates to: ERKVNTSEGSFNLLDQETGRAAY*EESCDA Trigger: CGCATCACAGCTTTCTTCCAAGTAAGCTGCCCGACC...TGTTTCTTGGTCCAAAAGATTAAAACTGCCCTCTGAAGTGTTCACCTTTCTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR TCA 72 bp | ACATCAAGGTCGGGCAGCTTACTTGGAAGAAAGCTGTaGTGCGCACAACAGAACTTCTGTAGTGAGACATCT | + |
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Preference number: 3 (lower is better) Translates to: TSRSGSLLGRKL*CAQQNFCSETS Trigger: AGATGTCTCACTACAGAAGTTCTGTTGTGCGCATCACAGCTTTCTTCCAAGTAAGCTGCCCGACCTTGATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR CAA 90 bp | AAAGAAACTGGAGATGCAGAGAAGACAGCTAAACTGCACCAGTATGTTAAAGATGGTCGGGCAGCTTACTaGGAAGAAAGCTGTGATGCG | + |
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Preference number: 3 (lower is better) Translates to: KETGDAEKTAKLHQYVKDGRAAY*EESCDA Trigger: CGCATCACAGCTTTCTTCCAAGTAAGCTGCCCGACC...ATCTTTAACATACTGGTGCAGTTTAGCTGTCTTCTCTGCATCTCCAGTTTCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR CAA 90 bp | TCAAGTTCTCATGTTCAGAAGACCCCTCAGGAATATACAGGGGTTGAGAGTCCACACTGTGCTCTGGGATaGAAAAGCTATCATACACTG | + |
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Preference number: 3 (lower is better) Translates to: SSSHVQKTPQEYTGVESPHCALG*KSYHTL Trigger: CAGTGTATGATAGCTTTTCAATCCCAGAGCACAGTG...TGGACTCTCAACCCCTGTATATTCCTGAGGGGTCTTCTGAACATGAGAACTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR CCA 72 bp | TGGGACTTGAGCCCAGGTGATGGTGCCAACCACATCTaGATATGCATCCTTTCTTCAGTTAAACTTTTTGAG | + |
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Preference number: 3 (lower is better) Translates to: WDLSPGDGANHI*ICILSSVKLFE Trigger: CTCAAAAAGTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGCTCAAGTCCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR TCA 72 bp | GTTTTCTCTTTATTTAATCTGGGACTTGAGCCCAGGTaGTGGTGCCAACCACATCTGGATATGCATCCTTTC | + |
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Preference number: 3 (lower is better) Translates to: VFSLFNLGLEPR*WCQPHLDMHPF Trigger: GAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGCTCAAGTCCCAGATTAAATAAAGAGAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR-3UTR CAA 90 bp | GCCCTCAGTGTCCTTTTCCTAGGTTTCAAGTTCTCATGTTCAGAAGACCCCTCACTTGTCCTTTTTCCTTaGTCATGGCTTGTAGAAAAT | + |
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Preference number: 3 (lower is better) Translates to: ALSVLFLGFKFSCSEDPSLVLFP*SWLVEN Trigger: ATTTTCTACAAGCCATGACAAAGGAAAAAGGACAAG...TGAGGGGTCTTCTGAACATGAGAACTTGAAACCTAGGAAAAGGACACTGAGGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR GCA 72 bp | TTGAGCCCAGGTGATGGTGCCAACCACATCTGGATATaGATCCTTTCTTCAGTTAAACTTTTTGAGAAACTC | + |
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Preference number: 3 (lower is better) Translates to: LSPGDGANHIWI*ILSSVKLFEKL Trigger: GAGTTTCTCAAAAAGTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGCTCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR CCA 72 bp | CTTTTGGACCAAGAAACAGTTTTGTGCATGTCTAAATaGAGACACTGTCTGGCCATAACAGTAAGGGTCACA | + |
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Preference number: 3 (lower is better) Translates to: LLDQETVLCMSK*RHCLAITVRVT Trigger: TGTGACCCTTACTGTTATGGCCAGACAGTGTCTCCATTTAGACATGCACAAAACTGTTTCTTGGTCCAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR CCA 72 bp | CTACCTAGTGAGGAAACAGAGACAAACACTGGTTCTTaGCTTGTTTTCTCTTTATTTAATCTGGGACTTGAG | + |
|
Preference number: 3 (lower is better) Translates to: LPSEETETNTGS*LVFSLFNLGLE Trigger: CTCAAGTCCCAGATTAAATAAAGAGAAAACAAGCCAAGAACCAGTGTTTGTCTCTGTTTCCTCACTAGGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216372.2 |
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| 3UTR CCA 72 bp | TTATCCTACTCTAATAAATGCCTACTGTCCCATACCTaGGCCCTAGATGAACAAAGGGCTTATCTATATAGT | + |
|
Preference number: 3 (lower is better) Translates to: LSYSNKCLLSHT*ALDEQRAYLYS Trigger: ACTATATAGATAAGCCCTTTGTTCATCTAGGGCCCAGGTATGGGACAGTAGGCATTTATTAGAGTAGGATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR TCA 72 bp | AATGAAACTACTTTTAACAGCAGAATAAAGCGATGTTaGAGCCAGCTAGAGACTAAGGAGCACATCTTCTTC | + |
|
Preference number: 3 (lower is better) Translates to: NETTFNSRIKRC*SQLETKEHIFF Trigger: GAAGAAGATGTGCTCCTTAGTCTCTAGCTGGCTTCAACATCGCTTTATTCTGCTGTTAAAAGTAGTTTCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR GCA 72 bp | AAATGTGCCATAGATCTGGTGAAGTTATATGCAAGTTaGCTTCTGCCCTGTCAAAACTTGTATTCTATTTAT | + |
|
Preference number: 3 (lower is better) Translates to: KCAIDLVKLYAS*LLPCQNLYSIY Trigger: ATAAATAGAATACAAGTTTTGACAGGGCAGAAGGCAACTTGCATATAACTTCACCAGATCTATGGCACATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| CDS-3UTR GCA 90 bp | ATCAAGGTCGGGCAGCTTACTTGGAAGAAAGCTGTGATGCGCACAACAGAACTTCACTGCATGAACATCTaGCCCCTTAGCCACCAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: IKVGQLTWKKAVMRTTELHCMNI*PLSHQL Trigger: GAGCTGGTGGCTAAGGGGGCAGATGTTCATGCAGTG...AAGTTCTGTTGTGCGCATCACAGCTTTCTTCCAAGTAAGCTGCCCGACCTTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| CDS-3UTR GCA 90 bp | TGTGATGCGCACAACAGAACTTCTGTAGTGAGACATCTTTTCTCTGTACATGGGCACTGCATGAACATCTaGCCCCTTAGCCACCAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: CDAHNRTSVVRHLFSVHGHCMNI*PLSHQL Trigger: GAGCTGGTGGCTAAGGGGGCAGATGTTCATGCAGTG...CCCATGTACAGAGAAAAGATGTCTCACTACAGAAGTTCTGTTGTGCGCATCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| 3UTR CAA 72 bp | AATGGTCAAGTGGGAAGAACTGAGTCTGAGAGTGTTTaGGATGACATTTGCCTCCTCGCAAGACTGTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: NGQVGRTESESV*DDICLLARLWG Trigger: TCCCCACAGTCTTGCGAGGAGGCAAATGTCATCCAAAACACTCTCAGACTCAGTTCTTCCCACTTGACCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| CDS-3UTR TCA 90 bp | GGTCGGGCAGCTTACTTGGAAGAAAGCTGTGATGCGCACAACAGAACTTCTGTAAGAAGCAGTTTCTTGTaGGTTGTTCTTCAGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GRAAYLEESCDAHNRTSVRSSFL*VVLQLW Trigger: CCAGAGCTGAAGAACAACTCACAAGAAACTGCTTCT...TACAGAAGTTCTGTTGTGCGCATCACAGCTTTCTTCCAAGTAAGCTGCCCGACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| CDS-3UTR TCA 90 bp | ATCAAGGTCGGGCAGCTTACTTGGAAGAAAGCTGTGATGCGCACAACAGAACTTGGAATCAGGTGTCCATaGGTTTTCAACAATTCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: IKVGQLTWKKAVMRTTELGIRCP*VFNNSS Trigger: GCTTGAATTGTTGAAAACTCATGGACACCTGATTCC...AAGTTCTGTTGTGCGCATCACAGCTTTCTTCCAAGTAAGCTGCCCGACCTTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| CDS-3UTR TCA 90 bp | AAAGAAACTGGAGATGCAGAGAAGACAGCTAAACTGCACCAGTATGTTAAAGATCCTACCCAGAGACTCTaGGTACCAGTGGGAATCAGG | + |
|
Preference number: 4 (lower is better) Translates to: KETGDAEKTAKLHQYVKDPTQRL*VPVGIR Trigger: CCTGATTCCCACTGGTACTCAGAGTCTCTGGGTAGG...ATCTTTAACATACTGGTGCAGTTTAGCTGTCTTCTCTGCATCTCCAGTTTCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| CDS-3UTR TCA 90 bp | TCTCATGTTCAGAAGACCCCTCAGGAATATACAGGGGTTGAGAGTCCATCAAAAAGAAGCAGTTTCTTGTaGGTTGTTCTTCAGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SHVQKTPQEYTGVESPSKRSSFL*VVLQLW Trigger: CCAGAGCTGAAGAACAACTCACAAGAAACTGCTTCT...TTTTGATGGACTCTCAACCCCTGTATATTCCTGAGGGGTCTTCTGAACATGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000216372.2 |
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| CDS-3UTR GCA 90 bp | GCCCAGGTGATGGTGCCAACCACATCTGGATATGCATCCTTTCTTCAGTTAAACGGGCTCCAAACCAAATaGTTTTCCAACTATGTAATG | + |
|
Preference number: 4 (lower is better) Translates to: AQVMVPTTSGYASFLQLNGLQTK*FSNYVM Trigger: CATTACATAGTTGGAAAAGCATTTGGTTTGGAGCCC...GTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATCACCTGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR CAA 72 bp | GTTCTTGGCTTGTTTTCTCTTTATTTAATCTGGGACTaGAGCCCAGGTGATGGTGCCAACCACATCTGGATA | + |
|
Preference number: 4 (lower is better) Translates to: VLGLFSLYLIWD*SPGDGANHIWI Trigger: TATCCAGATGTGGTTGGCACCATCACCTGGGCTCAAGTCCCAGATTAAATAAAGAGAAAACAAGCCAAGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216372.2 |
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| CDS-3UTR TCA 90 bp | TCTCATGTTCAGAAGACCCCTCAGGAATATACAGGGGTTGAGAGTCCATCAAAAGGAATCAGGTGTCCATaGGTTTTCAACAATTCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: SHVQKTPQEYTGVESPSKGIRCP*VFNNSS Trigger: GCTTGAATTGTTGAAAACTCATGGACACCTGATTCC...TTTTGATGGACTCTCAACCCCTGTATATTCCTGAGGGGTCTTCTGAACATGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| CDS-3UTR GCA 90 bp | CAGAACTTCTGTAGTGAGACATCTTTTCTCTGTACATGGGAATATTTTACATCTCACTGCATGAACATCTaGCCCCTTAGCCACCAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: QNFCSETSFLCTWEYFTSHCMNI*PLSHQL Trigger: GAGCTGGTGGCTAAGGGGGCAGATGTTCATGCAGTG...AGATGTAAAATATTCCCATGTACAGAGAAAAGATGTCTCACTACAGAAGTTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| CDS-3UTR CCA 90 bp | TCTCATGTTCAGAAGACCCCTCAGGAATATACAGGGGTTGAGAGTCCATCAAAATTAGGAGTAGGTCTTTaGGCTCCAAACCAAATGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SHVQKTPQEYTGVESPSKLGVGL*APNQML Trigger: AAGCATTTGGTTTGGAGCCCAAAGACCTACTCCTAA...TTTTGATGGACTCTCAACCCCTGTATATTCCTGAGGGGTCTTCTGAACATGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| 3UTR CAA 72 bp | CTAGTGAGGAAACAGAGACAAACACTGGTTCTTGGCTaGTTTTCTCTTTATTTAATCTGGGACTTGAGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: LVRKQRQTLVLG*FSLYLIWDLSP Trigger: TGGGCTCAAGTCCCAGATTAAATAAAGAGAAAACAAGCCAAGAACCAGTGTTTGTCTCTGTTTCCTCACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216372.2 |
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| CDS-3UTR TCA 90 bp | GATGGTGCCAACCACATCTGGATATGCATCCTTTCTTCAGTTAAACTTTTTGAGGGAATCAGGTGTCCATaGGTTTTCAACAATTCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: DGANHIWICILSSVKLFEGIRCP*VFNNSS Trigger: GCTTGAATTGTTGAAAACTCATGGACACCTGATTCC...CTCAAAAAGTTTAACTGAAGAAAGGATGCATATCCAGATGTGGTTGGCACCATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| CDS-3UTR CCA 90 bp | TGCATGTCTAAATGGAGACACTGTCTGGCCATAACAGTAAGGGTCACATGGGTTAGAGTTTTCCAGGTCTaGTTTTTCATCATCCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: CMSKWRHCLAITVRVTWVRVFQV*FFIILF Trigger: AAAAAGGATGATGAAAAACCAGACCTGGAAAACTCT...AACCCATGTGACCCTTACTGTTATGGCCAGACAGTGTCTCCATTTAGACATGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| CDS-3UTR TCA 90 bp | AAAGAAACTGGAGATGCAGAGAAGACAGCTAAACTGCACCAGTATGTTAAAGATGGAATCAGGTGTCCATaGGTTTTCAACAATTCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: KETGDAEKTAKLHQYVKDGIRCP*VFNNSS Trigger: GCTTGAATTGTTGAAAACTCATGGACACCTGATTCC...ATCTTTAACATACTGGTGCAGTTTAGCTGTCTTCTCTGCATCTCCAGTTTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| CDS-3UTR CCA 90 bp | GCTTACTTGGAAGAAAGCTGTGATGCGCACAACAGAACTTCTGTAGTGAGACATAGAGTTTTCCAGGTCTaGTTTTTCATCATCCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: AYLEESCDAHNRTSVVRHRVFQV*FFIILF Trigger: AAAAAGGATGATGAAAAACCAGACCTGGAAAACTCT...ATGTCTCACTACAGAAGTTCTGTTGTGCGCATCACAGCTTTCTTCCAAGTAAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| CDS-3UTR TCA 90 bp | CAGAACTTCTGTAGTGAGACATCTTTTCTCTGTACATGGGAATATTTTACATCTAGAAGCAGTTTCTTGTaGGTTGTTCTTCAGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: QNFCSETSFLCTWEYFTSRSSFL*VVLQLW Trigger: CCAGAGCTGAAGAACAACTCACAAGAAACTGCTTCT...AGATGTAAAATATTCCCATGTACAGAGAAAAGATGTCTCACTACAGAAGTTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| CDS-3UTR CCA 90 bp | GAAGAAAGCTGTGATGCGCACAACAGAACTTCTGTAGTGAGACATCTTTTCTCTAGAGTTTTCCAGGTCTaGTTTTTCATCATCCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: EESCDAHNRTSVVRHLFSRVFQV*FFIILF Trigger: AAAAAGGATGATGAAAAACCAGACCTGGAAAACTCT...AGAGAAAAGATGTCTCACTACAGAAGTTCTGTTGTGCGCATCACAGCTTTCTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| 3UTR CAA 72 bp | GACATATTAAAGGTGTATTTACTAGGTAATTCAAAGTaGACAATGAGCCCTCAGTGTCCTTTTCCTAGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: DILKVYLLGNSK*TMSPQCPFPRF Trigger: AAACCTAGGAAAAGGACACTGAGGGCTCATTGTCAACTTTGAATTACCTAGTAAATACACCTTTAATATGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| 3UTR CAA 72 bp | ACATCTGGATATGCATCCTTTCTTCAGTTAAACTTTTaGAGAAACTCCCTTCCAGACATATTAAAGGTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: TSGYASFLQLNF*RNSLPDILKVY Trigger: ATACACCTTTAATATGTCTGGAAGGGAGTTTCTCAAAAAGTTTAACTGAAGAAAGGATGCATATCCAGATGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214456.2 ENSMUST00000216372.2 |
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| CDS-3UTR CCA 90 bp | CAGAACTTCTGTAGTGAGACATCTTTTCTCTGTACATGGGAATATTTTACATCTAGAGTTTTCCAGGTCTaGTTTTTCATCATCCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: QNFCSETSFLCTWEYFTSRVFQV*FFIILF Trigger: AAAAAGGATGATGAAAAACCAGACCTGGAAAACTCT...AGATGTAAAATATTCCCATGTACAGAGAAAAGATGTCTCACTACAGAAGTTCTG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 4 transcripts: ENSMUST00000034406.4 ENSMUST00000214456.2 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| CDS-3UTR CAA 90 bp | TGCCTAATCCAGCAAGAGAGAAAGGTGAACACTTCAGAGGGCAGTTTTAATCTTGCAGTTTCTTGTGAGTaGTTCTTCAGCTCTGGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: CLIQQERKVNTSEGSFNLAVSCE*FFSSGL Trigger: CAAACCAGAGCTGAAGAACAACTCACAAGAAACTGC...AAGATTAAAACTGCCCTCTGAAGTGTTCACCTTTCTCTCTTGCTGGATTAGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034406.4 ENSMUST00000216372.2 |
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| CDS-3UTR CAA 90 bp | TTGGAAGAAAGCTGTGATGCGCACAACAGAACTTCTGTAGTGAGACATCTTTTCGCAGTTTCTTGTGAGTaGTTCTTCAGCTCTGGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: LEESCDAHNRTSVVRHLFAVSCE*FFSSGL Trigger: CAAACCAGAGCTGAAGAACAACTCACAAGAAACTGC...GAAAAGATGTCTCACTACAGAAGTTCTGTTGTGCGCATCACAGCTTTCTTCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| CDS-3UTR CAA 90 bp | CAGAACTTCTGTAGTGAGACATCTTTTCTCTGTACATGGGAATATTTTACATCTGCAGTTTCTTGTGAGTaGTTCTTCAGCTCTGGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: QNFCSETSFLCTWEYFTSAVSCE*FFSSGL Trigger: CAAACCAGAGCTGAAGAACAACTCACAAGAAACTGC...AGATGTAAAATATTCCCATGTACAGAGAAAAGATGTCTCACTACAGAAGTTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034406.4 ENSMUST00000216037.2 ENSMUST00000216372.2 |
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| CDS CCA 90 bp | GGAATGTGCCAAAAGGTAAAGATAAGATGTTTAGGAGTAGGTCTTTaGGCTCCAAACCAAATGCTTTTCCAACTATGTAATGGTTTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: GMCQKVKIRCLGVGL*APNQMLFQLCNGFF Trigger: AAAGAAACCATTACATAGTTGGAAAAGCATTTGGTTTGGAGCCCAAAGACCTACTCCTAAACATCTTATCTTTACCTTTTGGCACATTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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| CDS CCA 72 bp | CAAAAGGTAAAGATAAGATGTTTAGGAGTAGGTCTTTaGGCTCCAAACCAAATGCTTTTCCAACTATGTAAT | + |
|
Preference number: 6 (lower is better) Translates to: QKVKIRCLGVGL*APNQMLFQLCN Trigger: ATTACATAGTTGGAAAAGCATTTGGTTTGGAGCCCAAAGACCTACTCCTAAACATCTTATCTTTACCTTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214456.2 |
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