RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANKRD42 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041343

Ensembl transcript IDs: ENSMUST00000056106.14, ENSMUST00000118157.8, ENSMUST00000126305.8, ENSMUST00000138267.2, ENSMUST00000207131.2, ENSMUST00000207151.2

Found 216 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCGCGACACTGGTGACCTGGATTTTCTGCAGCGTTTCCTTGAGTTaGTCCACTTCCACTCGATACTCATCCAGCTGGCACTCTAACTTT +
Preference number: 1 (lower is better)
Translates to: AATLVTWIFCSVSLS*STSTRYSSSWHSNF
Trigger: AAAGTTAGAGTGCCAGCTGGATGAGTATCGAGTGGAAGTGGATCAACTCAAGGAAACGCTGCAGAAAATCCAGGTCACCAGTGTCGCGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR TCA 90 bp GGAGGTTTCCATTGTAGTCCACGTCTTCGATGCCACATCCCCATTTaGCAAGAAGTTGCAAGCAACCAAGCCGCCCATGAAAAGATGCAT +
Preference number: 1 (lower is better)
Translates to: GGFHCSPRLRCHIPI*QEVASNQAAHEKMH
Trigger: ATGCATCTTTTCATGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCATCGAAGACGTGGACTACAATGGAAACCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR GCA 90 bp CCATTTGACAAGAAGTTGCAAGCAACCAAGCCGCCCATGAAAAGATaGATAATGCACAGGTTTCCACTCTCTCTTGTCAGTCACGCTGGG +
Preference number: 1 (lower is better)
Translates to: PFDKKLQATKPPMKR*IMHRFPLSLVSHAG
Trigger: CCCAGCGTGACTGACAAGAGAGAGTGGAAACCTGTGCATTATGCATCTTTTCATGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR TCA 90 bp CAAACAATCAATGTGGCCCTGTCCAGCAGCTTTATGCATGGGAGTTaGTCCATTATCATCGCGTTCATTCAGATTGATTACCCCGTCTCC +
Preference number: 1 (lower is better)
Translates to: QTINVALSSSFMHGS*SIIIAFIQIDYPVS
Trigger: GGAGACGGGGTAATCAATCTGAATGAACGCGATGATAATGGATCAACTCCCATGCATAAAGCTGCTGGACAGGGCCACATTGATTGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
3UTR GCA 90 bp GCTTTGTTGGTAATATTGCTTTCGGCTCCCATTTCAATTAACCACTaGAAACAATCAATGTGGCCCTGTCCAGCAGCTTTATGCATGGGA +
Preference number: 1 (lower is better)
Translates to: ALLVILLSAPISINH*KQSMWPCPAALCMG
Trigger: TCCCATGCATAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCAGTGGTTAATTGAAATGGGAGCCGAAAGCAATATTACCAACAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
3UTR-3UTR TCA 90 bp TCAAACAATGGAGGTGGCCTTCCATGGCTGCTAAATGAACCGGGAGGTTTCCATTGCCACATCCCCATTTaGCAAGAAGTTGCAAGCAAC +
Preference number: 2 (lower is better)
Translates to: SNNGGGLPWLLNEPGGFHCHIPI*QEVASN
Trigger: GTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCA...ATGGAAACCTCCCGGTTCATTTAGCAGCCATGGAAGGCCACCTCCATTGTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR-3UTR CCA 90 bp AGCAGGTCAAGCCTCACCTGCCACTGTAGCCCATACTCATGGTATAAATTCAAGAGAGGCAGGAAGAGCTaGCAGTTTTCCTCACTCATG +
Preference number: 2 (lower is better)
Translates to: SRSSLTCHCSPYSWYKFKRGRKS*QFSSLM
Trigger: CATGAGTGAGGAAAACTGCCAGCTCTTCCTGCCTCT...CTTGAATTTATACCATGAGTATGGGCTACAGTGGCAGGTGAGGCTTGACCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR CAA 90 bp ATTGTAGTCCACGTCTTCGATGCCACATCCCCATTTGACAAGAAGTaGCAAGCAACCAAGCCGCCCATGAAAAGATGCATAATGCACAGG +
Preference number: 2 (lower is better)
Translates to: IVVHVFDATSPFDKK*QATKPPMKRCIMHR
Trigger: CCTGTGCATTATGCATCTTTTCATGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCATCGAAGACGTGGACTACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR CAA 90 bp AGAGGAGACCTCTTAGCCACATCACTGGGGGTCTCTCCTGCTTTGTaGGTAATATTGCTTTCGGCTCCCATTTCAATTAACCACTGCAAA +
Preference number: 2 (lower is better)
Translates to: RGDLLATSLGVSPAL*VILLSAPISINHCK
Trigger: TTTGCAGTGGTTAATTGAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGGTCTCCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207151.2
3UTR-3UTR TCA 90 bp CATATTTCTGTAGCCCCTCCAAGAGTTTCACTGCAGCCAAATGGGCAAATCTCTAGCATTTTCCCCTTCTaGACTGCAGGCTTTCTATGG +
Preference number: 2 (lower is better)
Translates to: HISVAPPRVSLQPNGQISSIFPF*TAGFLW
Trigger: CCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCT...AGAGATTTGCCCATTTGGCTGCAGTGAAACTCTTGGAGGGGCTACAGAAATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR-3UTR CCA 90 bp TTCTGCTTTAAATCCTCTTCGGTTATCCCACCCAAGTGTTTAAAGTTGCTCTCAGGAGGTGGCCTTCCATaGCTGCTAAATGAACCGGGA +
Preference number: 2 (lower is better)
Translates to: FCFKSSSVIPPKCLKLLSGGGLP*LLNEPG
Trigger: TCCCGGTTCATTTAGCAGCCATGGAAGGCCACCTCC...TGAGAGCAACTTTAAACACTTGGGTGGGATAACCGAAGAGGATTTAAAGCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR CAA 90 bp TGGGCAAATCTCTTAGCCACATCACTGGGGGTCTCTCCTGCTTTGTaGGTAATATTGCTTTCGGCTCCCATTTCAATTAACCACTGCAAA +
Preference number: 2 (lower is better)
Translates to: WANLLATSLGVSPAL*VILLSAPISINHCK
Trigger: TTTGCAGTGGTTAATTGAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGATTTGCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR CAA 90 bp AAATGGGCAAATCTCTTAGCCACATCACTGGGGGTCTCTCCTGCTTaGTTGGTAATATTGCTTTCGGCTCCCATTTCAATTAACCACTGC +
Preference number: 2 (lower is better)
Translates to: KWANLLATSLGVSPA*LVILLSAPISINHC
Trigger: GCAGTGGTTAATTGAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGATTTGCCCATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR-3UTR TCA 90 bp CAGAATACACAATGTTATGCTGCAAATCCTCCAGCAAGTGTCAATATAAATGCTCTTCTAGGGCTTCCATaGCTGCAGGCACTGTGCTGC +
Preference number: 2 (lower is better)
Translates to: QNTQCYAANPPASVNINALLGLP*LQALCC
Trigger: GCAGCACAGTGCCTGCAGTCATGGAAGCCCTAGAAG...AGCATTTATATTGACACTTGCTGGAGGATTTGCAGCATAACATTGTGTATTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR-3UTR GCA 90 bp TGCAAACAATCAATGTGGCCCTGTCCAGCAGCTTTATGCATGGGAGTTGATCCATTTCCCCTTCTGAACTaGAGGCTTTCTATGGATTCA +
Preference number: 2 (lower is better)
Translates to: CKQSMWPCPAALCMGVDPFPLLN*RLSMDS
Trigger: TGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAA...TGGATCAACTCCCATGCATAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR-3UTR GCA 90 bp ACAAAACAATCCAATGAGGTAGAGTGGCACAAACCTCTAATCCCAGCCCAGGGAGTTTACTCTCATCTGTaGTGTTTCCAAAGCCATACC +
Preference number: 2 (lower is better)
Translates to: TKQSNEVEWHKPLIPAQGVYSHL*CFQSHT
Trigger: GGTATGGCTTTGGAAACAGCACAGATGAGAGTAAAC...TCCCTGGGCTGGGATTAGAGGTTTGTGCCACTCTACCTCATTGGATTGTTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR-3UTR GCA 90 bp AGCAGGTCAAGCCTCACCTGCCACTGTAGCCCATACTCATGGTATAAATTCAAGTACACAATGTTATGCTaGAAATCCTCCAGCAAGTGT +
Preference number: 2 (lower is better)
Translates to: SRSSLTCHCSPYSWYKFKYTMLC*KSSSKC
Trigger: ACACTTGCTGGAGGATTTGCAGCATAACATTGTGTA...CTTGAATTTATACCATGAGTATGGGCTACAGTGGCAGGTGAGGCTTGACCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR-3UTR CCA 90 bp CTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGCGATACTCATCCAGCTaGCACTCTAACTTTTCCCTG +
Preference number: 2 (lower is better)
Translates to: LNCRLSMDSHLSTVKENQRYSSS*HSNFSL
Trigger: CAGGGAAAAGTTAGAGTGCCAGCTGGATGAGTATCG...CTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR-3UTR CCA 90 bp AGCAGGTCAAGCCTCACCTGCCACTGTAGCCCATACTCATGGTATAAATTCAAGTATAATGACGAAGCTTaGTTTGTCCATCTGCTTTCC +
Preference number: 2 (lower is better)
Translates to: SRSSLTCHCSPYSWYKFKYNDEA*FVHLLS
Trigger: GGAAAGCAGATGGACAAACCAAGCTTCGTCATTATA...CTTGAATTTATACCATGAGTATGGGCTACAGTGGCAGGTGAGGCTTGACCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR-3UTR CCA 90 bp ATTTCAATTAACCACTGCAAACAATCAATGTGGCCCTGTCCAGCAGCTTTATGCAGGAATTTCAAACAATaGAGGTGGCCTTCCATGGCT +
Preference number: 2 (lower is better)
Translates to: ISINHCKQSMWPCPAALCRNFKQ*RWPSMA
Trigger: AGCCATGGAAGGCCACCTCCATTGTTTGAAATTCCT...GCATAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCAGTGGTTAATTGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
3UTR-3UTR CCA 90 bp TTCTGCTTTAAATCCTCTTCGGTTATCCCACCCAAGTGTTTAAAGTTGCTCTCAAGGAATTTCAAACAATaGAGGTGGCCTTCCATGGCT +
Preference number: 2 (lower is better)
Translates to: FCFKSSSVIPPKCLKLLSRNFKQ*RWPSMA
Trigger: AGCCATGGAAGGCCACCTCCATTGTTTGAAATTCCT...TGAGAGCAACTTTAAACACTTGGGTGGGATAACCGAAGAGGATTTAAAGCAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR-3UTR CCA 90 bp ATGGGAGTTGATCCATTATCATCGCGTTCATTCAGATTGATTACCCCGTCTCCTATCATCATGATCATCTaGATGGCTTCCTTCATACTG +
Preference number: 2 (lower is better)
Translates to: MGVDPLSSRSFRLITPSPIIMII*MASFIL
Trigger: CAGTATGAAGGAAGCCATCCAGATGATCATGATGAT...AGGAGACGGGGTAATCAATCTGAATGAACGCGATGATAATGGATCAACTCCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
3UTR CAA 90 bp GCTTTATGCATGGGAGTTGATCCATTATCATCGCGTTCATTCAGATaGATTACCCCGTCTCCTATCAGTTTCTTAAGCACTTCTAAGTCA +
Preference number: 2 (lower is better)
Translates to: ALCMGVDPLSSRSFR*ITPSPISFLSTSKS
Trigger: TGACTTAGAAGTGCTTAAGAAACTGATAGGAGACGGGGTAATCAATCTGAATGAACGCGATGATAATGGATCAACTCCCATGCATAAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
3UTR-3UTR TCA 90 bp TTCTGCTTTAAATCCTCTTCGGTTATCCCACCCAAGTGTTTAAAGTTGCTCTCAAAGGCTAAATCATCATaGTCATCTGGATGGCTTCCT +
Preference number: 2 (lower is better)
Translates to: FCFKSSSVIPPKCLKLLSKAKSS*SSGWLP
Trigger: AGGAAGCCATCCAGATGATCATGATGATTTAGCCTT...TGAGAGCAACTTTAAACACTTGGGTGGGATAACCGAAGAGGATTTAAAGCAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR-3UTR TCA 90 bp TTTCTTGACAGCAGTCTAAGTCTTATCCCTCTGCAGTCTCTTTTTCATCGTTTACCATCTGCTTTCCTTTaGAGTAAAGCTTCTAGGGCT +
Preference number: 2 (lower is better)
Translates to: FLDSSLSLIPLQSLFHRLPSAFL*SKASRA
Trigger: AGCCCTAGAAGCTTTACTTCAAAGGAAAGCAGATGG...TAAACGATGAAAAAGAGACTGCAGAGGGATAAGACTTAGACTGCTGTCAAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR-3UTR TCA 90 bp AACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATCACATCTCTCTACAGTaGAGGAAAATCAGGATGTAT +
Preference number: 2 (lower is better)
Translates to: NCRLSMDSHLSTVKENQDHISLQ*RKIRMY
Trigger: ATACATCCTGATTTTCCTTCACTGTAGAGAGATGTG...ATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
3UTR-3UTR TCA 90 bp AACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATTTTCTCCATTATCATTaGAGGCTTTTAAGGCTTGTG +
Preference number: 2 (lower is better)
Translates to: NCRLSMDSHLSTVKENQDFLHYH*RLLRLV
Trigger: CACAAGCCTTAAAAGCCTTCAATGATAATGGAGAAA...ATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR CAA 90 bp TTCTGCTTTAAATCCTCTTCGGTTATCCCACCCAAGTGTTTAAAGTaGCTCTCAGCGATTTCAAGAAGTTGTCTCAATTCTACAATTTTC +
Preference number: 2 (lower is better)
Translates to: FCFKSSSVIPPKCLK*LSAISRSCLNSTIF
Trigger: GAAAATTGTAGAATTGAGACAACTTCTTGAAATCGCTGAGAGCAACTTTAAACACTTGGGTGGGATAACCGAAGAGGATTTAAAGCAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR TCA 72 bp CTGGTGACCTGGATTTTCTGCAGCGTTTCCTTGAGTTaGTCCACTTCCACTCGATACTCATCCAGCTGGCAC +
Preference number: 3 (lower is better)
Translates to: LVTWIFCSVSLS*STSTRYSSSWH
Trigger: GTGCCAGCTGGATGAGTATCGAGTGGAAGTGGATCAACTCAAGGAAACGCTGCAGAAAATCCAGGTCACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR CCA 72 bp TTCTGTAGCCCCTCCAAGAGTTTCACTGCAGCCAAATaGGCAAATCTCTTAGCCACATCACTGGGGGTCTCT +
Preference number: 3 (lower is better)
Translates to: FCSPSKSFTAAK*ANLLATSLGVS
Trigger: AGAGACCCCCAGTGATGTGGCTAAGAGATTTGCCCATTTGGCTGCAGTGAAACTCTTGGAGGGGCTACAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR-3UTR CAA 90 bp AGCAGGTCAAGCCTCACCTGCCACTGTAGCCCATACTCATGGTATAAATTCAAGTCCAAAGCCATACCATaGAGAGGCAGGAAGAGCTGG +
Preference number: 3 (lower is better)
Translates to: SRSSLTCHCSPYSWYKFKSKAIP*RGRKSW
Trigger: CCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGA...CTTGAATTTATACCATGAGTATGGGCTACAGTGGCAGGTGAGGCTTGACCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR TCA 72 bp CATTGTAGTCCACGTCTTCGATGCCACATCCCCATTTaGCAAGAAGTTGCAAGCAACCAAGCCGCCCATGAA +
Preference number: 3 (lower is better)
Translates to: HCSPRLRCHIPI*QEVASNQAAHE
Trigger: TTCATGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCATCGAAGACGTGGACTACAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR GCA 72 bp AGGAGACCTCTTAGCCACATCACTGGGGGTCTCTCCTaGTTTGTTGGTAATATTGCTTTCGGCTCCCATTTC +
Preference number: 3 (lower is better)
Translates to: RRPLSHITGGLS*FVGNIAFGSHF
Trigger: GAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGGTCTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207151.2
3UTR GCA 72 bp GGCAAATCTCTTAGCCACATCACTGGGGGTCTCTCCTaGTTTGTTGGTAATATTGCTTTCGGCTCCCATTTC +
Preference number: 3 (lower is better)
Translates to: GKSLSHITGGLS*FVGNIAFGSHF
Trigger: GAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGATTTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR TCA 72 bp TTACTCTCATCTGTGCTGTTTCCAAAGCCATACCATTaGGAGGCAGGAAGAGCTGGCAGTTTTCCTCACTCA +
Preference number: 3 (lower is better)
Translates to: LLSSVLFPKPYH*EAGRAGSFPHS
Trigger: TGAGTGAGGAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAGATGAGAGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR GCA 72 bp AAGAAGTTGCAAGCAACCAAGCCGCCCATGAAAAGATaGATAATGCACAGGTTTCCACTCTCTCTTGTCAGT +
Preference number: 3 (lower is better)
Translates to: KKLQATKPPMKR*IMHRFPLSLVS
Trigger: ACTGACAAGAGAGAGTGGAAACCTGTGCATTATGCATCTTTTCATGGGCGGCTTGGTTGCTTGCAACTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR CCA 72 bp TCAGTAGGAATTTCAAACAATGGAGGTGGCCTTCCATaGCTGCTAAATGAACCGGGAGGTTTCCATTGTAGT +
Preference number: 3 (lower is better)
Translates to: SVGISNNGGGLP*LLNEPGGFHCS
Trigger: ACTACAATGGAAACCTCCCGGTTCATTTAGCAGCCATGGAAGGCCACCTCCATTGTTTGAAATTCCTACTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
3UTR-3UTR CAA 90 bp ATTGCTTTAAAGAGGAGACCTCTTAGCCACATCACTGGGGGTCTCTCCTGCTTTCTTTTAAGGCTTGTGTaGCACTGTTCATTCTACTCA +
Preference number: 3 (lower is better)
Translates to: IALKRRPLSHITGGLSCFLLRLV*HCSFYS
Trigger: TGAGTAGAATGAACAGTGCAACACAAGCCTTAAAAG...AAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGGTCTCCTCTTTAAAGCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207151.2
3UTR TCA 72 bp AATGTGGCCCTGTCCAGCAGCTTTATGCATGGGAGTTaGTCCATTATCATCGCGTTCATTCAGATTGATTAC +
Preference number: 3 (lower is better)
Translates to: NVALSSSFMHGS*SIIIAFIQIDY
Trigger: GTAATCAATCTGAATGAACGCGATGATAATGGATCAACTCCCATGCATAAAGCTGCTGGACAGGGCCACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
3UTR GCA 72 bp CTCTGCAGTCTCTTTTTCATCGTTTACTCTCATCTGTaGTGTTTCCAAAGCCATACCATTGAGAGGCAGGAA +
Preference number: 3 (lower is better)
Translates to: LCSLFFIVYSHL*CFQSHTIERQE
Trigger: TTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAGATGAGAGTAAACGATGAAAAAGAGACTGCAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR TCA 72 bp GCTGGGCCAGGTCCAATACATTTTCTCCATTATCATTaGAGGCTTTTAAGGCTTGTGTTGCACTGTTCATTC +
Preference number: 3 (lower is better)
Translates to: AGPGPIHFLHYH*RLLRLVLHCSF
Trigger: GAATGAACAGTGCAACACAAGCCTTAAAAGCCTTCAATGATAATGGAGAAAATGTATTGGACCTGGCCCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
3UTR GCA 72 bp GTAATATTGCTTTCGGCTCCCATTTCAATTAACCACTaGAAACAATCAATGTGGCCCTGTCCAGCAGCTTTA +
Preference number: 3 (lower is better)
Translates to: VILLSAPISINH*KQSMWPCPAAL
Trigger: TAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCAGTGGTTAATTGAAATGGGAGCCGAAAGCAATATTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
3UTR-3UTR CAA 90 bp CCCATTTCAATTAACCACTGCAAACAATCAATGTGGCCCTGTCCAGCAGCTTTACTTTTAAGGCTTGTGTaGCACTGTTCATTCTACTCA +
Preference number: 3 (lower is better)
Translates to: PISINHCKQSMWPCPAALLLRLV*HCSFYS
Trigger: TGAGTAGAATGAACAGTGCAACACAAGCCTTAAAAG...TAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCAGTGGTTAATTGAAATGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
3UTR TCA 72 bp ACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTaGAGGAAAATCAGGATGTATTTAACCTTACTGCAC +
Preference number: 3 (lower is better)
Translates to: TAGFLWIHISLQ*RKIRMYLTLLH
Trigger: GTGCAGTAAGGTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
3UTR TCA 72 bp TGTAGCCCATACTCATGGTATAAATTCAAGCAGTTCTaGATGATCAGAATACACAATGTTATGCTGCAAATC +
Preference number: 3 (lower is better)
Translates to: CSPYSWYKFKQF*MIRIHNVMLQI
Trigger: GATTTGCAGCATAACATTGTGTATTCTGATCATTCAGAACTGCTTGAATTTATACCATGAGTATGGGCTACA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp CTGTGCTGTTTCCAAAGCCATACCATTGAGAGGCAGGAAGAGCTGGCAGTTTTCTGTAAGCAGGCATCCTaGCCCCGGATTGCAGCTATG +
Preference number: 4 (lower is better)
Translates to: LCCFQSHTIERQEELAVFCKQAS*PRIAAM
Trigger: CATAGCTGCAATCCGGGGTCAGGATGCCTGCTTACA...GAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR GCA 90 bp TGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTCATTTGACAAGAAGTTaGAAGCAACCAAGCCGCCCA +
Preference number: 4 (lower is better)
Translates to: CRRCCRCCSLHRMYSLQTHLTRS*KQPSRP
Trigger: TGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATG...AGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp TGCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGATGTCTGACAGCTGCTTaGCATCTCCAGCCCGGACCG +
Preference number: 4 (lower is better)
Translates to: CCSLHRMYSLQTLQRACGCLTAA*HLQPGP
Trigger: CGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACA...TCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp TGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTTTAAAGGCAGCCACATaGCCTGGAAAGGCTAAATCA +
Preference number: 4 (lower is better)
Translates to: CRRCCRCCSLHRMYSLQTLKAAT*PGKAKS
Trigger: TGATTTAGCCTTTCCAGGTCATGTGGCTGCCTTTAA...AGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR GCA 90 bp CTGTGCTGTTTCCAAAGCCATACCATTGAGAGGCAGGAAGAGCTGGCAGTTTTCACTATGTCTGACAGCTaGTTGACATCTCCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: LCCFQSHTIERQEELAVFTMSDS*LTSPAR
Trigger: CCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGT...GAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CCA 90 bp TTCCAAAGCCATACCATTGAGAGGCAGGAAGAGCTGGCAGTTTTCCTCACTCATGGAGGTGGCCTTCCATaGCTGCTAAATGAACCGGGA +
Preference number: 4 (lower is better)
Translates to: FQSHTIERQEELAVFLTHGGGLP*LLNEPG
Trigger: TCCCGGTTCATTTAGCAGCCATGGAAGGCCACCTCC...ATGAGTGAGGAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp TGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTCATCATGTATGCTACTaGAATGTACCTTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: CRRCCRCCSLHRMYSLQTHHVCY*NVPSSW
Trigger: CCAGGAAGAAGGTACATTTCAGTAGCATACATGATG...AGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp CTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGTGTCTGACAGCTGCTTaGCATCTCCAGCCCGGACCG +
Preference number: 4 (lower is better)
Translates to: LNCRLSMDSHLSTVKENQCLTAA*HLQPGP
Trigger: CGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACA...CTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCATGTCTGACAGCTGCTTaGCATCTCCAGCCCGGACCG +
Preference number: 4 (lower is better)
Translates to: PFDIQHFPLLNCRLSMDSCLTAA*HLQPGP
Trigger: CGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACA...TGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CTGAGCCCCCTGAATAAACTCTACAACATTCTGTTTCAAAAACCGCTGGGCCAGACGCTCCACTATGTCTaGCAGCTGCTTGACATCTCC +
Preference number: 4 (lower is better)
Translates to: LSPLNKLYNILFQKPLGQTLHYV*QLLDIS
Trigger: GGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGT...CTGGCCCAGCGGTTTTTGAAACAGAATGTTGTAGAGTTTATTCAGGGGGCTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp TGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTTGTAAAGGAGTAAACTaGTGGAGAGCATCCACTTCA +
Preference number: 4 (lower is better)
Translates to: CRRCCRCCSLHRMYSLQTCKGVN*WRASTS
Trigger: TGAAGTGGATGCTCTCCATCAGTTTACTCCTTTACA...AGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR GCA 90 bp TTTCCTCACTCATGTGCACCATGTGATGTGGGTGAGGCAATGGTTATAATGACGATCCTGACCCCGGATTaGAGCTATGTGAGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: FPHSCAPCDVGEAMVIMTILTPD*SYVSRC
Trigger: ACAGCGGCTCACATAGCTGCAATCCGGGGTCAGGAT...CGTCATTATAACCATTGCCTCACCCACATCACATGGTGCACATGAGTGAGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CCA 90 bp TGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTAATGTACCTTCTTCCTaGAACTTGAGTCTGCAGTCT +
Preference number: 4 (lower is better)
Translates to: CRRCCRCCSLHRMYSLQTNVPSS*NLSLQS
Trigger: AGACTGCAGACTCAAGTTCCAGGAAGAAGGTACATT...AGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp GCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACCTTCTTCCTGGAACTTaGGTCTGCAGTCTCCCTACG +
Preference number: 4 (lower is better)
Translates to: AAHSIECTHYKLFKGLVDLLPGT*VCSLPT
Trigger: CGTAGGGAGACTGCAGACTCAAGTTCCAGGAAGAAG...GTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp TCATGTGCACCATGTGATGTGGGTGAGGCAATGGTTATAATGACGAAGCTTGGTCTTCTTCCTGGAACTTaGGTCTGCAGTCTCCCTACG +
Preference number: 4 (lower is better)
Translates to: SCAPCDVGEAMVIMTKLGLLPGT*VCSLPT
Trigger: CGTAGGGAGACTGCAGACTCAAGTTCCAGGAAGAAG...ACCAAGCTTCGTCATTATAACCATTGCCTCACCCACATCACATGGTGCACATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp GCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACACGCTCCACTATGTCTaGCAGCTGCTTGACATCTCC +
Preference number: 4 (lower is better)
Translates to: AAHSIECTHYKLFKGLVDTLHYV*QLLDIS
Trigger: GGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGT...GTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR GCA 90 bp TGCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGAATCCTGACCCCGGATTaGAGCTATGTGAGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: CCSLHRMYSLQTLQRACGILTPD*SYVSRC
Trigger: ACAGCGGCTCACATAGCTGCAATCCGGGGTCAGGAT...TCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR GCA 90 bp CTGTGCTGTTTCCAAAGCCATACCATTGAGAGGCAGGAAGAGCTGGCAGTTTTCCATTTGACAAGAAGTTaGAAGCAACCAAGCCGCCCA +
Preference number: 4 (lower is better)
Translates to: LCCFQSHTIERQEELAVFHLTRS*KQPSRP
Trigger: TGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATG...GAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR CAA 72 bp CACGTCTTCGATGCCACATCCCCATTTGACAAGAAGTaGCAAGCAACCAAGCCGCCCATGAAAAGATGCATA +
Preference number: 4 (lower is better)
Translates to: HVFDATSPFDKK*QATKPPMKRCI
Trigger: TATGCATCTTTTCATGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCATCGAAGACGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CTGTTCATTCTACTCAGTAGGAATTTCAAACAATGGAGGTGGCCTTCCATGGCTCTTCTTCCTGGAACTTaGGTCTGCAGTCTCCCTACG +
Preference number: 4 (lower is better)
Translates to: LFILLSRNFKQWRWPSMALLPGT*VCSLPT
Trigger: CGTAGGGAGACTGCAGACTCAAGTTCCAGGAAGAAG...AGCCATGGAAGGCCACCTCCATTGTTTGAAATTCCTACTGAGTAGAATGAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp GCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGATGTCTGACAGCTGCTTaGCATCTCCAGCCCGGACCG +
Preference number: 4 (lower is better)
Translates to: AHCYGLCSHFEMSSPKERCLTAA*HLQPGP
Trigger: CGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACA...TCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp TTATCATTGAAGGCTTTTAAGGCTTGTGTTGCACTGTTCATTCTACTCAGTAGGTGTCTGACAGCTGCTTaGCATCTCCAGCCCGGACCG +
Preference number: 4 (lower is better)
Translates to: LSLKAFKACVALFILLSRCLTAA*HLQPGP
Trigger: CGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACA...CCTACTGAGTAGAATGAACAGTGCAACACAAGCCTTAAAAGCCTTCAATGATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCATGTAAGCAGGCATCCTaGCCCCGGATTGCAGCTATG +
Preference number: 4 (lower is better)
Translates to: PFDIQHFPLLNCRLSMDSCKQAS*PRIAAM
Trigger: CATAGCTGCAATCCGGGGTCAGGATGCCTGCTTACA...TGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR GCA 90 bp CTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATCCTGACCCCGGATTaGAGCTATGTGAGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: LQAFYGFTSLYSEGKSGCILTPD*SYVSRC
Trigger: ACAGCGGCTCACATAGCTGCAATCCGGGGTCAGGAT...ACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR CCA 90 bp CTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATGTGGAGGTGGCCTTCCATaGCTGCTAAATGAACCGGGA +
Preference number: 4 (lower is better)
Translates to: LQAFYGFTSLYSEGKSGCGGGLP*LLNEPG
Trigger: TCCCGGTTCATTTAGCAGCCATGGAAGGCCACCTCC...ACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CCA 90 bp CTGTGCTGTTTCCAAAGCCATACCATTGAGAGGCAGGAAGAGCTGGCAGTTTTCTGCAAACAATCAATGTaGCCCTGTCCAGCAGCTTTA +
Preference number: 4 (lower is better)
Translates to: LCCFQSHTIERQEELAVFCKQSM*PCPAAL
Trigger: TAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCA...GAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp CTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATGTCTTCTTCCTGGAACTTaGGTCTGCAGTCTCCCTACG +
Preference number: 4 (lower is better)
Translates to: LQAFYGFTSLYSEGKSGCLLPGT*VCSLPT
Trigger: CGTAGGGAGACTGCAGACTCAAGTTCCAGGAAGAAG...ACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CAGAATACACAATGTTATGCTGCAAATCCTCCAGCAAGTGTCAATATAAATGCTTGTCTGACAGCTGCTTaGCATCTCCAGCCCGGACCG +
Preference number: 4 (lower is better)
Translates to: QNTQCYAANPPASVNINACLTAA*HLQPGP
Trigger: CGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACA...AGCATTTATATTGACACTTGCTGGAGGATTTGCAGCATAACATTGTGTATTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp CTACAACATTCTGTTTCAAAAACCGCTGGGCCAGGTCCAATACATTTTCTCCATACGCTCCACTATGTCTaGCAGCTGCTTGACATCTCC +
Preference number: 4 (lower is better)
Translates to: LQHSVSKTAGPGPIHFLHTLHYV*QLLDIS
Trigger: GGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGT...ATGGAGAAAATGTATTGGACCTGGCCCAGCGGTTTTTGAAACAGAATGTTGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CTGTGCTGTTTCCAAAGCCATACCATTGAGAGGCAGGAAGAGCTGGCAGTTTTCAAGGCTAAATCATCATaGTCATCTGGATGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: LCCFQSHTIERQEELAVFKAKSS*SSGWLP
Trigger: AGGAAGCCATCCAGATGATCATGATGATTTAGCCTT...GAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp GCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACAGCGTTTCCTTGAGTTaGTCCACTTCCACTCGATAC +
Preference number: 4 (lower is better)
Translates to: AAHSIECTHYKLFKGLVDSVSLS*STSTRY
Trigger: GTATCGAGTGGAAGTGGATCAACTCAAGGAAACGCT...GTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp TTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGTCTGCAGCGTTTCCTTaGGTTGATCCACTTCCACTC +
Preference number: 4 (lower is better)
Translates to: FPLLNCRLSMDSHLSTVKSAAFP*VDPLPL
Trigger: GAGTGGAAGTGGATCAACTCAAGGAAACGCTGCAGA...CTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR GCA 90 bp ATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACTATGTCTGACAGCTaGTTGACATCTCCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: IQHFPLLNCRLSMDSHLSTMSDS*LTSPAR
Trigger: CCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGT...AGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR GCA 90 bp CTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATATCCTGACCCCGGATTaGAGCTATGTGAGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: LLNCRLSMDSHLSTVKENILTPD*SYVSRC
Trigger: ACAGCGGCTCACATAGCTGCAATCCGGGGTCAGGAT...ATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR GCA 90 bp ACAGCAGGTCAAGCCTCACCTGCCACTGTAGCCCATACTCATGGTATAAATTCACCGCCCATGAAAAGATaGATAATGCACAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: TAGQASPATVAHTHGINSPPMKR*IMHRFP
Trigger: TGGAAACCTGTGCATTATGCATCTTTTCATGGGCGG...TGAATTTATACCATGAGTATGGGCTACAGTGGCAGGTGAGGCTTGACCTGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR GCA 90 bp CCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCCTTGGCATCGGTaGTTCCTTCAACACCATGCC +
Preference number: 4 (lower is better)
Translates to: PFDIQHFPLLNCRLSMDSHPWHR*FLQHHA
Trigger: GGCATGGTGTTGAAGGAAGCACCGATGCCAAGGATG...TGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CCA 90 bp TTCCAAAGCCATACCATTGAGAGGCAGGAAGAGCTGGCAGTTTTCCTCACTCATAGGAATTTCAAACAATaGAGGTGGCCTTCCATGGCT +
Preference number: 4 (lower is better)
Translates to: FQSHTIERQEELAVFLTHRNFKQ*RWPSMA
Trigger: AGCCATGGAAGGCCACCTCCATTGTTTGAAATTCCT...ATGAGTGAGGAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR CAA 72 bp TTTACTCTCATCTGTGCTGTTTCCAAAGCCATACCATaGAGAGGCAGGAAGAGCTGGCAGTTTTCCTCACTC +
Preference number: 4 (lower is better)
Translates to: FTLICAVSKAIP*RGRKSWQFSSL
Trigger: GAGTGAGGAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAGATGAGAGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
3UTR CAA 72 bp GACCTCTTAGCCACATCACTGGGGGTCTCTCCTGCTTaGTTGGTAATATTGCTTTCGGCTCCCATTTCAATT +
Preference number: 4 (lower is better)
Translates to: DLLATSLGVSPA*LVILLSAPISI
Trigger: AATTGAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGTGTAAGCAGGCATCCTaGCCCCGGATTGCAGCTATG +
Preference number: 4 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVCKQAS*PRIAAM
Trigger: CATAGCTGCAATCCGGGGTCAGGATGCCTGCTTACA...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGTGTAAGCAGGCATCCTaGCCCCGGATTGCAGCTATG +
Preference number: 4 (lower is better)
Translates to: LTVMDFVLILKCLPQRKECKQAS*PRIAAM
Trigger: CATAGCTGCAATCCGGGGTCAGGATGCCTGCTTACA...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CAAGCCTCACCTGCCACTGTAGCCCATACTCATGGTATAAATTCAAGCAGTTCTTTAAAGGCAGCCACATaGCCTGGAAAGGCTAAATCA +
Preference number: 4 (lower is better)
Translates to: QASPATVAHTHGINSSSSLKAAT*PGKAKS
Trigger: TGATTTAGCCTTTCCAGGTCATGTGGCTGCCTTTAA...AGAACTGCTTGAATTTATACCATGAGTATGGGCTACAGTGGCAGGTGAGGCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR GCA 90 bp CTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATACTATGTCTGACAGCTaGTTGACATCTCCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: LLNCRLSMDSHLSTVKENTMSDS*LTSPAR
Trigger: CCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGT...ATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR GCA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGATCCTGACCCCGGATTaGAGCTATGTGAGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: LTVMDFVLILKCLPQRKEILTPD*SYVSRC
Trigger: ACAGCGGCTCACATAGCTGCAATCCGGGGTCAGGAT...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR GCA 90 bp GCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAATCCTGACCCCGGATTaGAGCTATGTGAGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: AHCYGLCSHFEMSSPKERILTPD*SYVSRC
Trigger: ACAGCGGCTCACATAGCTGCAATCCGGGGTCAGGAT...TCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR GCA 90 bp TCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAACTGGGGGTCTCTCCTaGTTTGTTGGTAATATTGCT +
Preference number: 4 (lower is better)
Translates to: SPSELQAFYGFTSLYSEGTGGLS*FVGNIA
Trigger: AGCAATATTACCAACAAAGCAGGAGAGACCCCCAGT...TCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR GCA 90 bp CAAGCCTCACCTGCCACTGTAGCCCATACTCATGGTATAAATTCAAGCAGTTCTACTGGGGGTCTCTCCTaGTTTGTTGGTAATATTGCT +
Preference number: 4 (lower is better)
Translates to: QASPATVAHTHGINSSSSTGGLS*FVGNIA
Trigger: AGCAATATTACCAACAAAGCAGGAGAGACCCCCAGT...AGAACTGCTTGAATTTATACCATGAGTATGGGCTACAGTGGCAGGTGAGGCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CCA 90 bp CTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGGAGGTGGCCTTCCATaGCTGCTAAATGAACCGGGA +
Preference number: 4 (lower is better)
Translates to: LHRMYSLQTLQRACGLNEGGGLP*LLNEPG
Trigger: TCCCGGTTCATTTAGCAGCCATGGAAGGCCACCTCC...TTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CCA 90 bp GATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAGGAGGTGGCCTTCCATaGCTGCTAAATGAACCGGGA +
Preference number: 4 (lower is better)
Translates to: DAHCYGLCSHFEMSSPKEGGGLP*LLNEPG
Trigger: TCCCGGTTCATTTAGCAGCCATGGAAGGCCACCTCC...TTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CCA 90 bp GCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGAGGAATTTCAAACAATaGAGGTGGCCTTCCATGGCT +
Preference number: 4 (lower is better)
Translates to: AAAHSIECTHYKLFKGLVRNFKQ*RWPSMA
Trigger: AGCCATGGAAGGCCACCTCCATTGTTTGAAATTCCT...CACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CCA 90 bp TGCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACGATACTCATCCAGCTaGCACTCTAACTTTTCCCTG +
Preference number: 4 (lower is better)
Translates to: CCSLHRMYSLQTLQRACGRYSSS*HSNFSL
Trigger: CAGGGAAAAGTTAGAGTGCCAGCTGGATGAGTATCG...TCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp GATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAACTTCTTCCTGGAACTTaGGTCTGCAGTCTCCCTACG +
Preference number: 4 (lower is better)
Translates to: DAHCYGLCSHFEMSSPKELLPGT*VCSLPT
Trigger: CGTAGGGAGACTGCAGACTCAAGTTCCAGGAAGAAG...TTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp TCATGTGCACCATGTGATGTGGGTGAGGCAATGGTTATAATGACGAAGCTTGGTCATCATGTATGCTACTaGAATGTACCTTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: SCAPCDVGEAMVIMTKLGHHVCY*NVPSSW
Trigger: CCAGGAAGAAGGTACATTTCAGTAGCATACATGATG...ACCAAGCTTCGTCATTATAACCATTGCCTCACCCACATCACATGGTGCACATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGACGCTCCACTATGTCTaGCAGCTGCTTGACATCTCC +
Preference number: 4 (lower is better)
Translates to: LTVMDFVLILKCLPQRKETLHYV*QLLDIS
Trigger: GGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGT...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp TCATGTGCACCATGTGATGTGGGTGAGGCAATGGTTATAATGACGAAGCTTGGTTGTAAAGGAGTAAACTaGTGGAGAGCATCCACTTCA +
Preference number: 4 (lower is better)
Translates to: SCAPCDVGEAMVIMTKLGCKGVN*WRASTS
Trigger: TGAAGTGGATGCTCTCCATCAGTTTACTCCTTTACA...ACCAAGCTTCGTCATTATAACCATTGCCTCACCCACATCACATGGTGCACATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp GATTCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACCTTACTGCATGTAAGCAGGCATCCTaGCCCCGGATTGCAGCTATG +
Preference number: 4 (lower is better)
Translates to: DSHLSTVKENQDVFNLTACKQAS*PRIAAM
Trigger: CATAGCTGCAATCCGGGGTCAGGATGCCTGCTTACA...TGCAGTAAGGTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCATGCCACATCCCCATTTaGCAAGAAGTTGCAAGCAAC +
Preference number: 4 (lower is better)
Translates to: PFDIQHFPLLNCRLSMDSCHIPI*QEVASN
Trigger: GTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCA...TGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR TCA 90 bp CTGTGCTGTTTCCAAAGCCATACCATTGAGAGGCAGGAAGAGCTGGCAGTTTTCTTTCTCCATTATCATTaGAGGCTTTTAAGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: LCCFQSHTIERQEELAVFFLHYH*RLLRLV
Trigger: CACAAGCCTTAAAAGCCTTCAATGATAATGGAGAAA...GAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR GCA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGACTATGTCTGACAGCTaGTTGACATCTCCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVTMSDS*LTSPAR
Trigger: CCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGT...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR GCA 90 bp GATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAACTATGTCTGACAGCTaGTTGACATCTCCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: DAHCYGLCSHFEMSSPKETMSDS*LTSPAR
Trigger: CCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGT...TTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR GCA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGCATCCTTGGCATCGGTaGTTCCTTCAACACCATGCC +
Preference number: 4 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVHPWHR*FLQHHA
Trigger: GGCATGGTGTTGAAGGAAGCACCGATGCCAAGGATG...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CCA 90 bp TTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGAGGAATTTCAAACAATaGAGGTGGCCTTCCATGGCT +
Preference number: 4 (lower is better)
Translates to: FPLLNCRLSMDSHLSTVKRNFKQ*RWPSMA
Trigger: AGCCATGGAAGGCCACCTCCATTGTTTGAAATTCCT...CTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
3UTR CAA 72 bp AATCTCTTAGCCACATCACTGGGGGTCTCTCCTGCTTaGTTGGTAATATTGCTTTCGGCTCCCATTTCAATT +
Preference number: 4 (lower is better)
Translates to: NLLATSLGVSPA*LVILLSAPISI
Trigger: AATTGAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CAGAATACACAATGTTATGCTGCAAATCCTCCAGCAAGTGTCAATATAAATGCTACGCTCCACTATGTCTaGCAGCTGCTTGACATCTCC +
Preference number: 4 (lower is better)
Translates to: QNTQCYAANPPASVNINATLHYV*QLLDIS
Trigger: GGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGT...AGCATTTATATTGACACTTGCTGGAGGATTTGCAGCATAACATTGTGTATTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp GTCCAGCAGCTTTATGCATGGGAGTTGATCCATTATCATCGCGTTCATTCAGATTGTAAAGGAGTAAACTaGTGGAGAGCATCCACTTCA +
Preference number: 4 (lower is better)
Translates to: VQQLYAWELIHYHRVHSDCKGVN*WRASTS
Trigger: TGAAGTGGATGCTCTCCATCAGTTTACTCCTTTACA...ATCTGAATGAACGCGATGATAATGGATCAACTCCCATGCATAAAGCTGCTGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CCAAAGGAAAGAGAACTAATACTATCATCTAATATCATCTTCCAGCTGAGAATGTGTAAGCAGGCATCCTaGCCCCGGATTGCAGCTATG +
Preference number: 4 (lower is better)
Translates to: PKERELILSSNIIFQLRMCKQAS*PRIAAM
Trigger: CATAGCTGCAATCCGGGGTCAGGATGCCTGCTTACA...CATTCTCAGCTGGAAGATGATATTAGATGATAGTATTAGTTCTCTTTCCTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGTCTGCAGCGTTTCCTTaGGTTGATCCACTTCCACTC +
Preference number: 4 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVSAAFP*VDPLPL
Trigger: GAGTGGAAGTGGATCAACTCAAGGAAACGCTGCAGA...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR GCA 90 bp CTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCATTTGACAAGAAGTTaGAAGCAACCAAGCCGCCCA +
Preference number: 4 (lower is better)
Translates to: LLNCRLSMDSHLSTVKENHLTRS*KQPSRP
Trigger: TGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATG...ATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR GCA 90 bp TTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGTGTCCAGCAGCTTTATaGATGGGAGTTGATCCATTA +
Preference number: 4 (lower is better)
Translates to: FPLLNCRLSMDSHLSTVKCPAAL*MGVDPL
Trigger: TAATGGATCAACTCCCATGCATAAAGCTGCTGGACA...CTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CCA 90 bp CCAACAGCAACAAAACAATCCAATGAGGTAGAGTGGCACAAACCTCTAATCCCAAATGTACCTTCTTCCTaGAACTTGAGTCTGCAGTCT +
Preference number: 4 (lower is better)
Translates to: PTATKQSNEVEWHKPLIPNVPSS*NLSLQS
Trigger: AGACTGCAGACTCAAGTTCCAGGAAGAAGGTACATT...TGGGATTAGAGGTTTGTGCCACTCTACCTCATTGGATTGTTTTGTTGCTGTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CCA 90 bp TTTCCTCACTCATGTGCACCATGTGATGTGGGTGAGGCAATGGTTATAATGACGATCATCATGATCATCTaGATGGCTTCCTTCATACTG +
Preference number: 4 (lower is better)
Translates to: FPHSCAPCDVGEAMVIMTIIMII*MASFIL
Trigger: CAGTATGAAGGAAGCCATCCAGATGATCATGATGAT...CGTCATTATAACCATTGCCTCACCCACATCACATGGTGCACATGAGTGAGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CCA 90 bp CTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGTTCACTGCAGCCAAATaGGCAAATCTCTTAGCCACA +
Preference number: 4 (lower is better)
Translates to: LNCRLSMDSHLSTVKENQFTAAK*ANLLAT
Trigger: TGTGGCTAAGAGATTTGCCCATTTGGCTGCAGTGAA...CTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CCA 90 bp AACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATCGATACTCATCCAGCTaGCACTCTAACTTTTCCCTG +
Preference number: 4 (lower is better)
Translates to: NCRLSMDSHLSTVKENQDRYSSS*HSNFSL
Trigger: CAGGGAAAAGTTAGAGTGCCAGCTGGATGAGTATCG...ATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CCA 90 bp AACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATCGCTCGGTTTCAAAATaGACTCAGTTTCCACTCCAC +
Preference number: 4 (lower is better)
Translates to: NCRLSMDSHLSTVKENQDRSVSK*TQFPLH
Trigger: GTGGAGTGGAAACTGAGTCCATTTTGAAACCGAGCG...ATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAACATCATGTATGCTACTaGAATGTACCTTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: PSELQAFYGFTSLYSEGKHHVCY*NVPSSW
Trigger: CCAGGAAGAAGGTACATTTCAGTAGCATACATGATG...TTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp ATTTCAATTAACCACTGCAAACAATCAATGTGGCCCTGTCCAGCAGCTTTATGCCATCATGTATGCTACTaGAATGTACCTTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: ISINHCKQSMWPCPAALCHHVCY*NVPSSW
Trigger: CCAGGAAGAAGGTACATTTCAGTAGCATACATGATG...GCATAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCAGTGGTTAATTGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACACGCTCCACTATGTCTaGCAGCTGCTTGACATCTCC +
Preference number: 4 (lower is better)
Translates to: LSMDSHLSTVKENQDVFNTLHYV*QLLDIS
Trigger: GGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGT...GTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGTGTAAAGGAGTAAACTaGTGGAGAGCATCCACTTCA +
Preference number: 4 (lower is better)
Translates to: LNCRLSMDSHLSTVKENQCKGVN*WRASTS
Trigger: TGAAGTGGATGCTCTCCATCAGTTTACTCCTTTACA...CTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CTGAATAAACTCTACAACATTCTGTTTCAAAAACCGCTGGGCCAGGTCCAATACTGTAAAGGAGTAAACTaGTGGAGAGCATCCACTTCA +
Preference number: 4 (lower is better)
Translates to: LNKLYNILFQKPLGQVQYCKGVN*WRASTS
Trigger: TGAAGTGGATGCTCTCCATCAGTTTACTCCTTTACA...GTATTGGACCTGGCCCAGCGGTTTTTGAAACAGAATGTTGTAGAGTTTATTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAATGCCACATCCCCATTTaGCAAGAAGTTGCAAGCAAC +
Preference number: 4 (lower is better)
Translates to: LHRMYSLQTLQRACGLNECHIPI*QEVASN
Trigger: GTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCA...TTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp GATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAATGCCACATCCCCATTTaGCAAGAAGTTGCAAGCAAC +
Preference number: 4 (lower is better)
Translates to: DAHCYGLCSHFEMSSPKECHIPI*QEVASN
Trigger: GTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCA...TTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR TCA 90 bp AACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATTTAAAGGCAGCCACATaGCCTGGAAAGGCTAAATCA +
Preference number: 4 (lower is better)
Translates to: NCRLSMDSHLSTVKENQDLKAAT*PGKAKS
Trigger: TGATTTAGCCTTTCCAGGTCATGTGGCTGCCTTTAA...ATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR TCA 90 bp TCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACCTTACTGCACTGAGCGTTTCCTTGAGTTaGTCCACTTCCACTCGATAC +
Preference number: 4 (lower is better)
Translates to: SHLSTVKENQDVFNLTALSVSLS*STSTRY
Trigger: GTATCGAGTGGAAGTGGATCAACTCAAGGAAACGCT...CAGTGCAGTAAGGTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR GCA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGCATTTGACAAGAAGTTaGAAGCAACCAAGCCGCCCA +
Preference number: 4 (lower is better)
Translates to: LTVMDFVLILKCLPQRKEHLTRS*KQPSRP
Trigger: TGGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATG...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CCA 90 bp CCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCAAATGTACCTTCTTCCTaGAACTTGAGTCTGCAGTCT +
Preference number: 4 (lower is better)
Translates to: PFDIQHFPLLNCRLSMDSNVPSS*NLSLQS
Trigger: AGACTGCAGACTCAAGTTCCAGGAAGAAGGTACATT...TGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR CCA 90 bp GCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTATGAGCTCTCATTCTaGCATTTGCTTTGTCTGATT +
Preference number: 4 (lower is better)
Translates to: AAHSIECTHYKLFKGLVDYELSF*HLLCLI
Trigger: AATCAGACAAAGCAAATGCCAGAATGAGAGCTCATA...GTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
3UTR CAA 72 bp ATGGGAGTTGATCCATTATCATCGCGTTCATTCAGATaGATTACCCCGTCTCCTATCAGTTTCTTAAGCACT +
Preference number: 4 (lower is better)
Translates to: MGVDPLSSRSFR*ITPSPISFLST
Trigger: AGTGCTTAAGAAACTGATAGGAGACGGGGTAATCAATCTGAATGAACGCGATGATAATGGATCAACTCCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126305.8
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp TCAGAATACACAATGTTATGCTGCAAATCCTCCAGCAAGTGTCAATATAAATGCTGCCACATCCCCATTTaGCAAGAAGTTGCAAGCAAC +
Preference number: 4 (lower is better)
Translates to: SEYTMLCCKSSSKCQYKCCHIPI*QEVASN
Trigger: GTTGCTTGCAACTTCTTGTCAAATGGGGATGTGGCA...GCATTTATATTGACACTTGCTGGAGGATTTGCAGCATAACATTGTGTATTCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR TCA 90 bp GATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAATTAAAGGCAGCCACATaGCCTGGAAAGGCTAAATCA +
Preference number: 4 (lower is better)
Translates to: DAHCYGLCSHFEMSSPKELKAAT*PGKAKS
Trigger: TGATTTAGCCTTTCCAGGTCATGTGGCTGCCTTTAA...TTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR GCA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGCCGCCCATGAAAAGATaGATAATGCACAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVPPMKR*IMHRFP
Trigger: TGGAAACCTGTGCATTATGCATCTTTTCATGGGCGG...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR GCA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGACTGGGGGTCTCTCCTaGTTTGTTGGTAATATTGCT +
Preference number: 4 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVTGGLS*FVGNIA
Trigger: AGCAATATTACCAACAAAGCAGGAGAGACCCCCAGT...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CCA 90 bp TTAAGTCCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGAATGTACCTTCTTCCTaGAACTTGAGTCTGCAGTCT +
Preference number: 4 (lower is better)
Translates to: LSPFDIQHFPLLNCRLSMNVPSS*NLSLQS
Trigger: AGACTGCAGACTCAAGTTCCAGGAAGAAGGTACATT...CATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGGACTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR CCA 90 bp GCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAAGGAATTTCAAACAATaGAGGTGGCCTTCCATGGCT +
Preference number: 4 (lower is better)
Translates to: AHCYGLCSHFEMSSPKERRNFKQ*RWPSMA
Trigger: AGCCATGGAAGGCCACCTCCATTGTTTGAAATTCCT...TCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CCA 90 bp ATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTATCATCATGATCATCTaGATGGCTTCCTTCATACTG +
Preference number: 4 (lower is better)
Translates to: IQHFPLLNCRLSMDSHLSIIMII*MASFIL
Trigger: CAGTATGAAGGAAGCCATCCAGATGATCATGATGAT...AGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CCA 90 bp CTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAATGCAAACAATCAATGTaGCCCTGTCCAGCAGCTTTA +
Preference number: 4 (lower is better)
Translates to: LHRMYSLQTLQRACGLNECKQSM*PCPAAL
Trigger: TAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCA...TTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CCA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGTGCAAACAATCAATGTaGCCCTGTCCAGCAGCTTTA +
Preference number: 4 (lower is better)
Translates to: LTVMDFVLILKCLPQRKECKQSM*PCPAAL
Trigger: TAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCA...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CCA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGTTCACTGCAGCCAAATaGGCAAATCTCTTAGCCACA +
Preference number: 4 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVFTAAK*ANLLAT
Trigger: TGTGGCTAAGAGATTTGCCCATTTGGCTGCAGTGAA...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp TTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCATCATGTATGCTACTaGAATGTACCTTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: FDIQHFPLLNCRLSMDSHHHVCY*NVPSSW
Trigger: CCAGGAAGAAGGTACATTTCAGTAGCATACATGATG...ATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR TCA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGCATCATGTATGCTACTaGAATGTACCTTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: LTVMDFVLILKCLPQRKEHHVCY*NVPSSW
Trigger: CCAGGAAGAAGGTACATTTCAGTAGCATACATGATG...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAAAGGCTAAATCATCATaGTCATCTGGATGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: LHRMYSLQTLQRACGLNEKAKSS*SSGWLP
Trigger: AGGAAGCCATCCAGATGATCATGATGATTTAGCCTT...TTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp TTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATAAGGCTAAATCATCATaGTCATCTGGATGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: FDIQHFPLLNCRLSMDSHKAKSS*SSGWLP
Trigger: AGGAAGCCATCCAGATGATCATGATGATTTAGCCTT...ATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR TCA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGAAGGCTAAATCATCATaGTCATCTGGATGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: LTVMDFVLILKCLPQRKEKAKSS*SSGWLP
Trigger: AGGAAGCCATCCAGATGATCATGATGATTTAGCCTT...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR GCA 90 bp GATTCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACCTTACTGCACCGCCCATGAAAAGATaGATAATGCACAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: DSHLSTVKENQDVFNLTAPPMKR*IMHRFP
Trigger: TGGAAACCTGTGCATTATGCATCTTTTCATGGGCGG...TGCAGTAAGGTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR GCA 90 bp ATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAACCGCCCATGAAAAGATaGATAATGCACAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: MLTVMDFVLILKCLPQRKPPMKR*IMHRFP
Trigger: TGGAAACCTGTGCATTATGCATCTTTTCATGGGCGG...TTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR GCA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGTGTCCAGCAGCTTTATaGATGGGAGTTGATCCATTA +
Preference number: 4 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVCPAAL*MGVDPL
Trigger: TAATGGATCAACTCCCATGCATAAAGCTGCTGGACA...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR GCA 90 bp ATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAACTGGGGGTCTCTCCTaGTTTGTTGGTAATATTGCT +
Preference number: 4 (lower is better)
Translates to: MLTVMDFVLILKCLPQRKTGGLS*FVGNIA
Trigger: AGCAATATTACCAACAAAGCAGGAGAGACCCCCAGT...TTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CCA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGAATGTACCTTCTTCCTaGAACTTGAGTCTGCAGTCT +
Preference number: 4 (lower is better)
Translates to: LTVMDFVLILKCLPQRKENVPSS*NLSLQS
Trigger: AGACTGCAGACTCAAGTTCCAGGAAGAAGGTACATT...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
3UTR CAA 72 bp AAATCCTCTTCGGTTATCCCACCCAAGTGTTTAAAGTaGCTCTCAGCGATTTCAAGAAGTTGTCTCAATTCT +
Preference number: 4 (lower is better)
Translates to: KSSSVIPPKCLK*LSAISRSCLNS
Trigger: AGAATTGAGACAACTTCTTGAAATCGCTGAGAGCAACTTTAAACACTTGGGTGGGATAACCGAAGAGGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126305.8
CDS-3UTR GCA 90 bp CAGAATACACAATGTTATGCTGCAAATCCTCCAGCAAGTGTCAATATAAATGCTTGTCCAGCAGCTTTATaGATGGGAGTTGATCCATTA +
Preference number: 4 (lower is better)
Translates to: QNTQCYAANPPASVNINACPAAL*MGVDPL
Trigger: TAATGGATCAACTCCCATGCATAAAGCTGCTGGACA...AGCATTTATATTGACACTTGCTGGAGGATTTGCAGCATAACATTGTGTATTCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CCA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGATCATCATGATCATCTaGATGGCTTCCTTCATACTG +
Preference number: 4 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVIIMII*MASFIL
Trigger: CAGTATGAAGGAAGCCATCCAGATGATCATGATGAT...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CCA 90 bp GATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAATCATCATGATCATCTaGATGGCTTCCTTCATACTG +
Preference number: 4 (lower is better)
Translates to: DAHCYGLCSHFEMSSPKEIIMII*MASFIL
Trigger: CAGTATGAAGGAAGCCATCCAGATGATCATGATGAT...TTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CCA 90 bp CTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAACAGCAGCTTTATGCATaGGAGTTGATCCATTATCAT +
Preference number: 4 (lower is better)
Translates to: LHRMYSLQTLQRACGLNEQQLYA*ELIHYH
Trigger: ATGATAATGGATCAACTCCCATGCATAAAGCTGCTG...TTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CCA 90 bp TCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACCTTACTGCACTGCAGCAGCTTTATGCATaGGAGTTGATCCATTATCAT +
Preference number: 4 (lower is better)
Translates to: SHLSTVKENQDVFNLTALQQLYA*ELIHYH
Trigger: ATGATAATGGATCAACTCCCATGCATAAAGCTGCTG...CAGTGCAGTAAGGTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CCA 90 bp TTTCTTGACAGCAGTCTAAGTCTTATCCCTCTGCAGTCTCTTTTTCATCGTTTACAGCAGCTTTATGCATaGGAGTTGATCCATTATCAT +
Preference number: 4 (lower is better)
Translates to: FLDSSLSLIPLQSLFHRLQQLYA*ELIHYH
Trigger: ATGATAATGGATCAACTCCCATGCATAAAGCTGCTG...TAAACGATGAAAAAGAGACTGCAGAGGGATAAGACTTAGACTGCTGTCAAGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CCA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGCAGCAGCTTTATGCATaGGAGTTGATCCATTATCAT +
Preference number: 4 (lower is better)
Translates to: LTVMDFVLILKCLPQRKEQQLYA*ELIHYH
Trigger: ATGATAATGGATCAACTCCCATGCATAAAGCTGCTG...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CCA 90 bp CTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACTGCAAACAATCAATGTaGCCCTGTCCAGCAGCTTTA +
Preference number: 4 (lower is better)
Translates to: LSMDSHLSTVKENQDVFNCKQSM*PCPAAL
Trigger: TAAAGCTGCTGGACAGGGCCACATTGATTGTTTGCA...GTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR TCA 90 bp CCAAAGGAAAGAGAACTAATACTATCATCTAATATCATCTTCCAGCTGAGAATGTGTAAAGGAGTAAACTaGTGGAGAGCATCCACTTCA +
Preference number: 4 (lower is better)
Translates to: PKERELILSSNIIFQLRMCKGVN*WRASTS
Trigger: TGAAGTGGATGCTCTCCATCAGTTTACTCCTTTACA...CATTCTCAGCTGGAAGATGATATTAGATGATAGTATTAGTTCTCTTTCCTTTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR TCA 90 bp CTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAATTTCTCCATTATCATTaGAGGCTTTTAAGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: LHRMYSLQTLQRACGLNEFLHYH*RLLRLV
Trigger: CACAAGCCTTAAAAGCCTTCAATGATAATGGAGAAA...TTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR TCA 90 bp TCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACCTTACTGCACTGTTTCTCCATTATCATTaGAGGCTTTTAAGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: SHLSTVKENQDVFNLTALFLHYH*RLLRLV
Trigger: CACAAGCCTTAAAAGCCTTCAATGATAATGGAGAAA...CAGTGCAGTAAGGTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR GCA 90 bp CCAAAGGAAAGAGAACTAATACTATCATCTAATATCATCTTCCAGCTGAGAATGTGTCCAGCAGCTTTATaGATGGGAGTTGATCCATTA +
Preference number: 4 (lower is better)
Translates to: PKERELILSSNIIFQLRMCPAAL*MGVDPL
Trigger: TAATGGATCAACTCCCATGCATAAAGCTGCTGGACA...CATTCTCAGCTGGAAGATGATATTAGATGATAGTATTAGTTCTCTTTCCTTTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR TCA 90 bp CCAAAGGAAAGAGAACTAATACTATCATCTAATATCATCTTCCAGCTGAGAATGTTTCTCCATTATCATTaGAGGCTTTTAAGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: PKERELILSSNIIFQLRMFLHYH*RLLRLV
Trigger: CACAAGCCTTAAAAGCCTTCAATGATAATGGAGAAA...CATTCTCAGCTGGAAGATGATATTAGATGATAGTATTAGTTCTCTTTCCTTTGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CCA 90 bp CTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACTATGAGCTCTCATTCTaGCATTTGCTTTGTCTGATT +
Preference number: 4 (lower is better)
Translates to: LSMDSHLSTVKENQDVFNYELSF*HLLCLI
Trigger: AATCAGACAAAGCAAATGCCAGAATGAGAGCTCATA...GTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CAA 90 bp CTGTGCTGTTTCCAAAGCCATACCATTGAGAGGCAGGAAGAGCTGGCAGTTTTCCATCCTGACCCCGGATaGCAGCTATGTGAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: LCCFQSHTIERQEELAVFHPDPG*QLCEPL
Trigger: CAGCGGCTCACATAGCTGCAATCCGGGGTCAGGATG...GAAAACTGCCAGCTCTTCCTGCCTCTCAATGGTATGGCTTTGGAAACAGCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CAA 90 bp TGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTCCATTTGACAAGAAGTaGCAAGCAACCAAGCCGCCC +
Preference number: 5 (lower is better)
Translates to: CRRCCRCCSLHRMYSLQTPFDKK*QATKPP
Trigger: GGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGG...AGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS TCA 90 bp GAGAGCATCCACTTCATTAAGGTTGGCACCACGCTCCACTATGTCTaGCAGCTGCTTGACATCTCCAGCCCGGACCGCATCATGTATGCT +
Preference number: 5 (lower is better)
Translates to: ESIHFIKVGTTLHYV*QLLDISSPDRIMYA
Trigger: AGCATACATGATGCGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGTGGTGCCAACCTTAATGAAGTGGATGCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056106.14
ENSMUST00000118157.8
ENSMUST00000126305.8
ENSMUST00000138267.2
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR CAA 90 bp TGCCGCCGCTGCTGCCGCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTGGGGTCTCTCCTGCTTaGTTGGTAATATTGCTTTCG +
Preference number: 5 (lower is better)
Translates to: CRRCCRCCSLHRMYSLQTGVSPA*LVILLS
Trigger: CGAAAGCAATATTACCAACAAAGCAGGAGAGACCCC...AGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGCGGCAGCAGCGGCGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS GCA 90 bp TCCACTTCATTAAGGTTGGCACCACGCTCCACTATGTCTGACAGCTaGTTGACATCTCCAGCCCGGACCGCATCATGTATGCTACTGAAA +
Preference number: 5 (lower is better)
Translates to: STSLRLAPRSTMSDS*LTSPARTASCMLLK
Trigger: TTTCAGTAGCATACATGATGCGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGTGGTGCCAACCTTAATGAAGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056106.14
ENSMUST00000118157.8
ENSMUST00000126305.8
ENSMUST00000138267.2
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR CAA 90 bp TGCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACATCCTGACCCCGGATaGCAGCTATGTGAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: CCSLHRMYSLQTLQRACGHPDPG*QLCEPL
Trigger: CAGCGGCTCACATAGCTGCAATCCGGGGTCAGGATG...TCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CAA 90 bp CCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCCTGACCCCGGATaGCAGCTATGTGAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: PFDIQHFPLLNCRLSMDSHPDPG*QLCEPL
Trigger: CAGCGGCTCACATAGCTGCAATCCGGGGTCAGGATG...TGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR CAA 90 bp GCTGCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGGTTTCCACTCTCTCTaGTCAGTCACGCTGGGATCC +
Preference number: 5 (lower is better)
Translates to: AAAHSIECTHYKLFKGLVGFHSL*SVTLGS
Trigger: GGATCCCAGCGTGACTGACAAGAGAGAGTGGAAACC...CACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CAA 90 bp ACAGCAGGTCAAGCCTCACCTGCCACTGTAGCCCATACTCATGGTATAAATTCACCATTTGACAAGAAGTaGCAAGCAACCAAGCCGCCC +
Preference number: 5 (lower is better)
Translates to: TAGQASPATVAHTHGINSPFDKK*QATKPP
Trigger: GGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGG...TGAATTTATACCATGAGTATGGGCTACAGTGGCAGGTGAGGCTTGACCTGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS TCA 90 bp CTTGTAGTTGTCTGTGTGGCATCAGCACCACTCCAGAGTAGCCAGTaGAGGCACTCTAAACTTCCAGAATGTGCTGCCCAATGTAAAGGA +
Preference number: 5 (lower is better)
Translates to: LVVVCVASAPLQSSQ*RHSKLPECAAQCKG
Trigger: TCCTTTACATTGGGCAGCACATTCTGGAAGTTTAGAGTGCCTTCACTGGCTACTCTGGAGTGGTGCTGATGCCACACAGACAACTACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056106.14
ENSMUST00000118157.8
ENSMUST00000126305.8
ENSMUST00000138267.2
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR CAA 90 bp TTAAGTCCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGCATCCTGACCCCGGATaGCAGCTATGTGAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: LSPFDIQHFPLLNCRLSMHPDPG*QLCEPL
Trigger: CAGCGGCTCACATAGCTGCAATCCGGGGTCAGGATG...CATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGGACTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118157.8
ENSMUST00000126305.8
CDS-3UTR CAA 90 bp CCAACAGCAACAAAACAATCCAATGAGGTAGAGTGGCACAAACCTCTAATCCCAGGTTTCCACTCTCTCTaGTCAGTCACGCTGGGATCC +
Preference number: 5 (lower is better)
Translates to: PTATKQSNEVEWHKPLIPGFHSL*SVTLGS
Trigger: GGATCCCAGCGTGACTGACAAGAGAGAGTGGAAACC...TGGGATTAGAGGTTTGTGCCACTCTACCTCATTGGATTGTTTTGTTGCTGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CAA 90 bp GCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGACATCCTGACCCCGGATaGCAGCTATGTGAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: AHCYGLCSHFEMSSPKERHPDPG*QLCEPL
Trigger: CAGCGGCTCACATAGCTGCAATCCGGGGTCAGGATG...TCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS-3UTR CAA 90 bp CCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCAGGTTTCCACTCTCTCTaGTCAGTCACGCTGGGATCC +
Preference number: 5 (lower is better)
Translates to: PFDIQHFPLLNCRLSMDSGFHSL*SVTLGS
Trigger: GGATCCCAGCGTGACTGACAAGAGAGAGTGGAAACC...TGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CAA 90 bp CAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACACCATTTGACAAGAAGTaGCAAGCAACCAAGCCGCCC +
Preference number: 5 (lower is better)
Translates to: QHFPLLNCRLSMDSHLSTPFDKK*QATKPP
Trigger: GGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGG...TGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CAA 90 bp CTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGGGTTTCCACTCTCTCTaGTCAGTCACGCTGGGATCC +
Preference number: 5 (lower is better)
Translates to: LTVMDFVLILKCLPQRKEGFHSL*SVTLGS
Trigger: GGATCCCAGCGTGACTGACAAGAGAGAGTGGAAACC...CTCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CAA 90 bp ACAAAACAATCCAATGAGGTAGAGTGGCACAAACCTCTAATCCCAGCCCAGGGACTTTATGCATGGGAGTaGATCCATTATCATCGCGTT +
Preference number: 5 (lower is better)
Translates to: TKQSNEVEWHKPLIPAQGLYAWE*IHYHRV
Trigger: AACGCGATGATAATGGATCAACTCCCATGCATAAAG...TCCCTGGGCTGGGATTAGAGGTTTGTGCCACTCTACCTCATTGGATTGTTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CAA 90 bp GCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACCTTTATGCATGGGAGTaGATCCATTATCATCGCGTT +
Preference number: 5 (lower is better)
Translates to: AAHSIECTHYKLFKGLVDLYAWE*IHYHRV
Trigger: AACGCGATGATAATGGATCAACTCCCATGCATAAAG...GTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CAA 90 bp GCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACGCTTTGTTGGTAATATaGCTTTCGGCTCCCATTTCA +
Preference number: 5 (lower is better)
Translates to: AAHSIECTHYKLFKGLVDALLVI*LSAPIS
Trigger: TGAAATGGGAGCCGAAAGCAATATTACCAACAAAGC...GTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CAA 90 bp TCATGTGCACCATGTGATGTGGGTGAGGCAATGGTTATAATGACGAAGCTTGGTGCTTTGTTGGTAATATaGCTTTCGGCTCCCATTTCA +
Preference number: 5 (lower is better)
Translates to: SCAPCDVGEAMVIMTKLGALLVI*LSAPIS
Trigger: TGAAATGGGAGCCGAAAGCAATATTACCAACAAAGC...ACCAAGCTTCGTCATTATAACCATTGCCTCACCCACATCACATGGTGCACATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CAA 90 bp ATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTGGGGTCTCTCCTGCTTaGTTGGTAATATTGCTTTCG +
Preference number: 5 (lower is better)
Translates to: IQHFPLLNCRLSMDSHLSGVSPA*LVILLS
Trigger: CGAAAGCAATATTACCAACAAAGCAGGAGAGACCCC...AGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CAA 90 bp ATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAACCATTTGACAAGAAGTaGCAAGCAACCAAGCCGCCC +
Preference number: 5 (lower is better)
Translates to: MLTVMDFVLILKCLPQRKPFDKK*QATKPP
Trigger: GGGCGGCTTGGTTGCTTGCAACTTCTTGTCAAATGG...TTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CAA 90 bp GCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACCTTTTAAGGCTTGTGTaGCACTGTTCATTCTACTCA +
Preference number: 5 (lower is better)
Translates to: AAHSIECTHYKLFKGLVDLLRLV*HCSFYS
Trigger: TGAGTAGAATGAACAGTGCAACACAAGCCTTAAAAG...GTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CAA 90 bp CCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAAGTCTCTCCTGCTTTGTaGGTAATATTGCTTTCGGCT +
Preference number: 5 (lower is better)
Translates to: PSELQAFYGFTSLYSEGKVSPAL*VILLSA
Trigger: AGCCGAAAGCAATATTACCAACAAAGCAGGAGAGAC...TTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CAA 90 bp GCTGCTCACTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACATTCTGGCATTTGCTTaGTCTGATTCACTCAGACAT +
Preference number: 5 (lower is better)
Translates to: AAHSIECTHYKLFKGLVDILAFA*SDSLRH
Trigger: ATGTCTGAGTGAATCAGACAAAGCAAATGCCAGAAT...GTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAGTGAGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CAA 90 bp TTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGCCCAAGTGTTTAAAGTaGCTCTCAGCGATTTCAAGA +
Preference number: 5 (lower is better)
Translates to: FPLLNCRLSMDSHLSTVKPKCLK*LSAISR
Trigger: TCTTGAAATCGCTGAGAGCAACTTTAAACACTTGGG...CTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CAA 90 bp TTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCACATCTCTCTACAGTGAAGCTTTTAAGGCTTGTGTaGCACTGTTCATTCTACTCA +
Preference number: 5 (lower is better)
Translates to: FPLLNCRLSMDSHLSTVKLLRLV*HCSFYS
Trigger: TGAGTAGAATGAACAGTGCAACACAAGCCTTAAAAG...CTTCACTGTAGAGAGATGTGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CAA 90 bp TTTCTTGACAGCAGTCTAAGTCTTATCCCTCTGCAGTCTCTTTTTCATCGTTTAGGGGTCTCTCCTGCTTaGTTGGTAATATTGCTTTCG +
Preference number: 5 (lower is better)
Translates to: FLDSSLSLIPLQSLFHRLGVSPA*LVILLS
Trigger: CGAAAGCAATATTACCAACAAAGCAGGAGAGACCCC...TAAACGATGAAAAAGAGACTGCAGAGGGATAAGACTTAGACTGCTGTCAAGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CAA 90 bp GATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAGGGGTCTCTCCTGCTTaGTTGGTAATATTGCTTTCG +
Preference number: 5 (lower is better)
Translates to: DAHCYGLCSHFEMSSPKEGVSPA*LVILLS
Trigger: CGAAAGCAATATTACCAACAAAGCAGGAGAGACCCC...TTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CAA 90 bp CTCCATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTCTCTCCTGCTTTGTaGGTAATATTGCTTTCGGCT +
Preference number: 5 (lower is better)
Translates to: LHRMYSLQTLQRACGLNEVSPAL*VILLSA
Trigger: AGCCGAAAGCAATATTACCAACAAAGCAGGAGAGAC...TTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CAA 90 bp TTTCTTGACAGCAGTCTAAGTCTTATCCCTCTGCAGTCTCTTTTTCATCGTTTAGTCTCTCCTGCTTTGTaGGTAATATTGCTTTCGGCT +
Preference number: 5 (lower is better)
Translates to: FLDSSLSLIPLQSLFHRLVSPAL*VILLSA
Trigger: AGCCGAAAGCAATATTACCAACAAAGCAGGAGAGAC...TAAACGATGAAAAAGAGACTGCAGAGGGATAAGACTTAGACTGCTGTCAAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CAA 90 bp CCCTTTGATATACAGCATTTTCCCCTTCTGAACTGCAGGCTTTCTATGGATTCAATTCTGGCATTTGCTTaGTCTGATTCACTCAGACAT +
Preference number: 5 (lower is better)
Translates to: PFDIQHFPLLNCRLSMDSILAFA*SDSLRH
Trigger: ATGTCTGAGTGAATCAGACAAAGCAAATGCCAGAAT...TGAATCCATAGAAAGCCTGCAGTTCAGAAGGGGAAAATGCTGTATATCAAAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CAA 90 bp GCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGACTTTATGCATGGGAGTaGATCCATTATCATCGCGTT +
Preference number: 5 (lower is better)
Translates to: AHCYGLCSHFEMSSPKERLYAWE*IHYHRV
Trigger: AACGCGATGATAATGGATCAACTCCCATGCATAAAG...TCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CAA 90 bp TCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACCTTACTGCACTGGCTTTGTTGGTAATATaGCTTTCGGCTCCCATTTCA +
Preference number: 5 (lower is better)
Translates to: SHLSTVKENQDVFNLTALALLVI*LSAPIS
Trigger: TGAAATGGGAGCCGAAAGCAATATTACCAACAAAGC...CAGTGCAGTAAGGTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS-3UTR CAA 90 bp GCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGAGCTTTGTTGGTAATATaGCTTTCGGCTCCCATTTCA +
Preference number: 5 (lower is better)
Translates to: AHCYGLCSHFEMSSPKERALLVI*LSAPIS
Trigger: TGAAATGGGAGCCGAAAGCAATATTACCAACAAAGC...TCTTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CAA 90 bp ATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAAAGTCTCTCCTGCTTTGTaGGTAATATTGCTTTCGGCT +
Preference number: 5 (lower is better)
Translates to: MLTVMDFVLILKCLPQRKVSPAL*VILLSA
Trigger: AGCCGAAAGCAATATTACCAACAAAGCAGGAGAGAC...TTTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CAA 90 bp CATAGAATGTACTCACTACAAACTCTTCAAAGGGCTTGTGGACTAAATGAAGTGCCCAAGTGTTTAAAGTaGCTCTCAGCGATTTCAAGA +
Preference number: 5 (lower is better)
Translates to: HRMYSLQTLQRACGLNEVPKCLK*LSAISR
Trigger: TCTTGAAATCGCTGAGAGCAACTTTAAACACTTGGG...CACTTCATTTAGTCCACAAGCCCTTTGAAGAGTTTGTAGTGAGTACATTCTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056106.14
CDS-3UTR CAA 90 bp GATGCTCACTGTTATGGACTTTGTTCTCATTTTGAAATGTCTTCCCCAAAGGAACTTTTAAGGCTTGTGTaGCACTGTTCATTCTACTCA +
Preference number: 5 (lower is better)
Translates to: DAHCYGLCSHFEMSSPKELLRLV*HCSFYS
Trigger: TGAGTAGAATGAACAGTGCAACACAAGCCTTAAAAG...TTCCTTTGGGGAAGACATTTCAAAATGAGAACAAAGTCCATAACAGTGAGCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207131.2
CDS-3UTR CAA 90 bp TCAGAATACACAATGTTATGCTGCAAATCCTCCAGCAAGTGTCAATATAAATGCCTTTTAAGGCTTGTGTaGCACTGTTCATTCTACTCA +
Preference number: 5 (lower is better)
Translates to: SEYTMLCCKSSSKCQYKCLLRLV*HCSFYS
Trigger: TGAGTAGAATGAACAGTGCAACACAAGCCTTAAAAG...GCATTTATATTGACACTTGCTGGAGGATTTGCAGCATAACATTGTGTATTCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS-3UTR CAA 90 bp CTTTCTATGGATTCACATCTCTCTACAGTGAAGGAAAATCAGGATGTATTTAACCTTTATGCATGGGAGTaGATCCATTATCATCGCGTT +
Preference number: 5 (lower is better)
Translates to: LSMDSHLSTVKENQDVFNLYAWE*IHYHRV
Trigger: AACGCGATGATAATGGATCAACTCCCATGCATAAAG...GTTAAATACATCCTGATTTTCCTTCACTGTAGAGAGATGTGAATCCATAGAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118157.8
CDS TCA 72 bp CACTTCATTAAGGTTGGCACCACGCTCCACTATGTCTaGCAGCTGCTTGACATCTCCAGCCCGGACCGCATC +
Preference number: 6 (lower is better)
Translates to: HFIKVGTTLHYV*QLLDISSPDRI
Trigger: GATGCGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGTGGTGCCAACCTTAATGAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056106.14
ENSMUST00000118157.8
ENSMUST00000126305.8
ENSMUST00000138267.2
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS GCA 72 bp TTAAGGTTGGCACCACGCTCCACTATGTCTGACAGCTaGTTGACATCTCCAGCCCGGACCGCATCATGTATG +
Preference number: 6 (lower is better)
Translates to: LRLAPRSTMSDS*LTSPARTASCM
Trigger: CATACATGATGCGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGTGGTGCCAACCTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056106.14
ENSMUST00000118157.8
ENSMUST00000126305.8
ENSMUST00000138267.2
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS TCA 72 bp GTCTGTGTGGCATCAGCACCACTCCAGAGTAGCCAGTaGAGGCACTCTAAACTTCCAGAATGTGCTGCCCAA +
Preference number: 6 (lower is better)
Translates to: VCVASAPLQSSQ*RHSKLPECAAQ
Trigger: TTGGGCAGCACATTCTGGAAGTTTAGAGTGCCTTCACTGGCTACTCTGGAGTGGTGCTGATGCCACACAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056106.14
ENSMUST00000118157.8
ENSMUST00000126305.8
ENSMUST00000138267.2
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS CAA 90 bp ACTTCATTAAGGTTGGCACCACGCTCCACTATGTCTGACAGCTGCTaGACATCTCCAGCCCGGACCGCATCATGTATGCTACTGAAATGT +
Preference number: 6 (lower is better)
Translates to: TSLRLAPRSTMSDSC*TSPARTASCMLLKC
Trigger: ACATTTCAGTAGCATACATGATGCGGTCCGGGCTGGAGATGTCAAGCAGCTGTCAGACATAGTGGAGCGTGGTGCCAACCTTAATGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000056106.14
ENSMUST00000118157.8
ENSMUST00000126305.8
ENSMUST00000138267.2
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS TCA 72 bp GCAGCAAGGTGTAGTGGGGTGCATCCACGATCATCTTaGGTTGCTAGGTTGGCTCCATTGATTATAAGAGCC +
Preference number: 6 (lower is better)
Translates to: AARCSGVHPRSS*VARLAPLIIRA
Trigger: GGCTCTTATAATCAATGGAGCCAACCTAGCAACTCAAGATGATCGTGGATGCACCCCACTACACCTTGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000056106.14
ENSMUST00000118157.8
ENSMUST00000126305.8
ENSMUST00000138267.2
ENSMUST00000207131.2
ENSMUST00000207151.2
CDS GCA 72 bp CAAGACACTCTTAGCCACATCACTGGGGGTCTCTCCTaGTTTGTTGGTAATATTGCTTTCGGCTCCCATTTC +
Preference number: 6 (lower is better)
Translates to: QDTLSHITGGLS*FVGNIAFGSHF
Trigger: GAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGTGTCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS CAA 90 bp CTAGACAAGACACTCTTAGCCACATCACTGGGGGTCTCTCCTGCTTaGTTGGTAATATTGCTTTCGGCTCCCATTTCAATTAACCACTGC +
Preference number: 6 (lower is better)
Translates to: LDKTLLATSLGVSPA*LVILLSAPISINHC
Trigger: GCAGTGGTTAATTGAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGTGTCTTGTCTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS CAA 90 bp GACAAGACACTCTTAGCCACATCACTGGGGGTCTCTCCTGCTTTGTaGGTAATATTGCTTTCGGCTCCCATTTCAATTAACCACTGCAAA +
Preference number: 6 (lower is better)
Translates to: DKTLLATSLGVSPAL*VILLSAPISINHCK
Trigger: TTTGCAGTGGTTAATTGAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGTGTCTTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2
CDS CAA 72 bp ACACTCTTAGCCACATCACTGGGGGTCTCTCCTGCTTaGTTGGTAATATTGCTTTCGGCTCCCATTTCAATT +
Preference number: 6 (lower is better)
Translates to: TLLATSLGVSPA*LVILLSAPISI
Trigger: AATTGAAATGGGAGCCGAAAGCAATATTACCAACAAAGCAGGAGAGACCCCCAGTGATGTGGCTAAGAGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138267.2