RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANKRD36 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020481

Ensembl transcript IDs: ENSMUST00000109855.8, ENSMUST00000109856.8, ENSMUST00000118112.9, ENSMUST00000137933.2

Found 139 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGCAGGTTCACATCCTTaGTGCAGGGTGATGGTGATG +
Preference number: 2 (lower is better)
Translates to: LTGWTPYPIPMVPGLGWAAGSHP*CRVMVM
Trigger: CATCACCATCACCCTGCAGCAAGGATGTGAACCTGC...TGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
3UTR-3UTR GCA 90 bp AGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGGGTTCACATCCTTGCTaGAGGGTGATGGTGATGCTG +
Preference number: 2 (lower is better)
Translates to: RHYSCEDSQAGLPTQYPWGSHPC*RVMVML
Trigger: CAGCATCACCATCACCCTGCAGCAAGGATGTGAACC...CCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
3UTR GCA 72 bp GGATGGGCAGAGGAGGTTGCAGGTTCACATCCTTGCTaGAGGGTGATGGTGATGCTGGTAGCAGCTGTGGCA +
Preference number: 3 (lower is better)
Translates to: GWAEEVAGSHPC*RVMVMLVAAVA
Trigger: TGCCACAGCTGCTACCAGCATCACCATCACCCTGCAGCAAGGATGTGAACCTGCAACCTCCTCTGCCCATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
3UTR-3UTR CAA 90 bp AGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCAGGTTCACATCCTaGCTGCAGGGTGATGGTGAT +
Preference number: 3 (lower is better)
Translates to: RHYSCEDSQAGLPTQYPWCRFTS*LQGDGD
Trigger: ATCACCATCACCCTGCAGCAAGGATGTGAACCTGCA...CCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
3UTR TCA 72 bp AACACAAAACATCATACGCAGTTGTTTTTCCCACTCTaGGTAATTGCTGTTACAGTTAACTCATGCGTTGGT +
Preference number: 3 (lower is better)
Translates to: NTKHHTQLFFPL*VIAVTVNSCVG
Trigger: ACCAACGCATGAGTTAACTGTAACAGCAATTACTCAGAGTGGGAAAAACAACTGCGTATGATGTTTTGTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR GCA 90 bp CTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGGTTGGATCTGCAGGTaGGCTCTGGGCTTGTGGGCA +
Preference number: 4 (lower is better)
Translates to: LTGWTPYPIPMVPGLGWAGWICR*ALGLWA
Trigger: TGCCCACAAGCCCAGAGCGCACCTGCAGATCCAACC...TGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp CTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCACTCGCGGGGGCTCCATaGTTCCTTCTCACTGCCCTT +
Preference number: 4 (lower is better)
Translates to: LTGWTPYPIPMVPGLGWALAGAP*FLLTAL
Trigger: AAGGGCAGTGAGAAGGAAGCATGGAGCCCCCGCGAG...TGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp TCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGCTCTCCTGTCTCCAGTaGGAGACTCTCTCCCATGCG +
Preference number: 4 (lower is better)
Translates to: SQAGLPTQYPWCQAWVGQLSCLQ*ETLSHA
Trigger: CGCATGGGAGAGAGTCTCTCACTGGAGACAGGAGAG...CTGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp TCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGCTGGGGCTTCAAAATTaGCCTTGCAGGGCAGTGGCT +
Preference number: 4 (lower is better)
Translates to: SQAGLPTQYPWCQAWVGQLGLQN*PCRAVA
Trigger: AGCCACTGCCCTGCAAGGGCAATTTTGAAGCCCCAG...CTGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp GGTTCACATCCTTGCTGCAGGGTGATGGTGATGCTGGTAGCAGCTGTGGCAGCTGGGGGTGAGTCTGCTTaGTCTCCTCCTCAGGCAGGG +
Preference number: 4 (lower is better)
Translates to: GSHPCCRVMVMLVAAVAAGGESA*SPPQAG
Trigger: CCCTGCCTGAGGAGGAGAGCAAGCAGACTCACCCCC...AGCTGCCACAGCTGCTACCAGCATCACCATCACCCTGCAGCAAGGATGTGAACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR CCA 90 bp TCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGCTCTCGCTTTCAAGGTaGACTTTCTCCCAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SQAGLPTQYPWCQAWVGQLSLSR*TFSQAR
Trigger: CCTGGCCTGGGAGAAAGTCCACCTTGAAAGCGAGAG...CTGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp CAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGGACTCTTCAACCTTGAAGTaGCTTCTACAGCCACCCGGA +
Preference number: 4 (lower is better)
Translates to: QAGLPTQYPWCQAWVGQDSSTLK*LLQPPG
Trigger: TCCGGGTGGCTGTAGAAGTCACTTCAAGGTTGAAGA...GTCCTGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp ATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGTCTCAAATTCCGGTGTaGCCACAGGCTCGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: IHVRTHRLDSLPNTHGARSQIPV*PQARGG
Trigger: GCCCCCGCGAGCCTGTGGTCACACCGGAATTTGAGA...CCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp TCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGCCTGTACATGTCGCTTaGAAGGGCAGAATCACCCCA +
Preference number: 4 (lower is better)
Translates to: SQAGLPTQYPWCQAWVGQPVHVA*KGRITP
Trigger: TGGGGTGATTCTGCCCTTGCAAGCGACATGTACAGG...CTGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp ATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCATCGGCGGCTGTGTaGTGCAGCTCAGGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: IHVRTHRLDSLPNTHGARPSAAV*CSSGQL
Trigger: AAGCTGCCCTGAGCTGCAGCACACAGCCGCCGATGG...CCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR CCA 90 bp TCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGCACCTTCCTCCTGTCTaGGAGAGGTCTGCAGTGTTA +
Preference number: 4 (lower is better)
Translates to: SQAGLPTQYPWCQAWVGQHLPPV*ERSAVL
Trigger: TAACACTGCAGACCTCTCCCAGACAGGAGGAAGGTG...CTGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR CCA 90 bp CTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAAGAGGACGAGGGAGATaGAAAGGCATTTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: LTGWTPYPIPMVPGLGWARGRGR*KGISKA
Trigger: GGCCTTGGAAATGCCTTTCCATCTCCCTCGTCCTCT...TGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR CCA 90 bp GGGATGGGCAGAGGAGGTTGCAGGTTCACATCCTTGCTGCAGGGTGATGGTGATGCCCTTGCAGGGCAGTaGCTTCAGGAACAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: GMGRGGCRFTSLLQGDGDALAGQ*LQEQVL
Trigger: CAGGACCTGTTCCTGAAGCCACTGCCCTGCAAGGGC...ATCACCATCACCCTGCAGCAAGGATGTGAACCTGCAACCTCCTCTGCCCATCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp TCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGGGGAAACTTAGTAAGTaGCTGGCCACTGTAGTCCAC +
Preference number: 4 (lower is better)
Translates to: SQAGLPTQYPWCQAWVGQGKLSK*LATVVH
Trigger: GTGGACTACAGTGGCCAGTCACTTACTAAGTTTCCC...CTGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp TCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGCTTCAAAATTGCCCTTaGAGGGCAGTGGCTTCAGGA +
Preference number: 4 (lower is better)
Translates to: SQAGLPTQYPWCQAWVGQLQNCP*RAVASG
Trigger: TCCTGAAGCCACTGCCCTGCAAGGGCAATTTTGAAG...CTGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR CCA 90 bp GGGATGGGCAGAGGAGGTTGCAGGTTCACATCCTTGCTGCAGGGTGATGGTGATGAAAGCTCTAGTTGTTaGGCCACCAGGGGGCGCATC +
Preference number: 4 (lower is better)
Translates to: GMGRGGCRFTSLLQGDGDESSSC*ATRGRI
Trigger: GATGCGCCCCCTGGTGGCCCAACAACTAGAGCTTTC...ATCACCATCACCCTGCAGCAAGGATGTGAACCTGCAACCTCCTCTGCCCATCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp CTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCACTCCGAATCCACTTCTaGTGTTGCCTGTTCCATATC +
Preference number: 4 (lower is better)
Translates to: LTGWTPYPIPMVPGLGWALRIHF*CCLFHI
Trigger: GATATGGAACAGGCAACAGCAGAAGTGGATTCGGAG...TGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp GGGATGGGCAGAGGAGGTTGCAGGTTCACATCCTTGCTGCAGGGTGATGGTGATAGCTTCCCCGGGGTCTaGTTCACTCCTTCCTTCAAC +
Preference number: 4 (lower is better)
Translates to: GMGRGGCRFTSLLQGDGDSFPGV*FTPSFN
Trigger: GTTGAAGGAAGGAGTGAAGCAGACCCCGGGGAAGCT...ATCACCATCACCCTGCAGCAAGGATGTGAACCTGCAACCTCCTCTGCCCATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp GGGATGGGCAGAGGAGGTTGCAGGTTCACATCCTTGCTGCAGGGTGATGGTGATCTTTTGTTCCAGCTGTaGTGTCCCCTCCGAATCCAC +
Preference number: 4 (lower is better)
Translates to: GMGRGGCRFTSLLQGDGDLLFQL*CPLRIH
Trigger: GTGGATTCGGAGGGGACATCACAGCTGGAACAAAAG...ATCACCATCACCCTGCAGCAAGGATGTGAACCTGCAACCTCCTCTGCCCATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp GGGATGGGCAGAGGAGGTTGCAGGTTCACATCCTTGCTGCAGGGTGATGGTGATCCCATGCGCTTTCACTaGAGGAACTTCTGGATGTCC +
Preference number: 4 (lower is better)
Translates to: GMGRGGCRFTSLLQGDGDPMRFH*RNFWMS
Trigger: GGACATCCAGAAGTTCCTTCAGTGAAAGCGCATGGG...ATCACCATCACCCTGCAGCAAGGATGTGAACCTGCAACCTCCTCTGCCCATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp CTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAAACTCATGGCCTTCTTaGTTTTCACCCATACGTACT +
Preference number: 4 (lower is better)
Translates to: LTGWTPYPIPMVPGLGWANSWPS*FSPIRT
Trigger: AGTACGTATGGGTGAAAAGCAAGAAGGCCATGAGTT...TGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp GGTTCACATCCTTGCTGCAGGGTGATGGTGATGCTGGTAGCAGCTGTGGCAGCTAGAGACTCTCTCCCATaGGCTTTCACTGAAGGAACT +
Preference number: 4 (lower is better)
Translates to: GSHPCCRVMVMLVAAVAARDSLP*AFTEGT
Trigger: AGTTCCTTCAGTGAAAGCGCATGGGAGAGAGTCTCT...AGCTGCCACAGCTGCTACCAGCATCACCATCACCCTGCAGCAAGGATGTGAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp ATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGTCCAGGTCCATACTCTaGTGCTTCCTGCTTACTTCT +
Preference number: 4 (lower is better)
Translates to: IHVRTHRLDSLPNTHGARSRSIL*CFLLTS
Trigger: AGAAGTAAGCAGGAAGCAGCAGAGTATGGACCTGGA...CCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp AGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGCCTTTCTTTGGCGTTTaGAAGCCTGTTGGCATCACT +
Preference number: 4 (lower is better)
Translates to: RHYSCEDSQAGLPTQYPWPFFGV*KPVGIT
Trigger: AGTGATGCCAACAGGCTTTCAAACGCCAAAGAAAGG...CCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp ATTTGTAGGACAGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCTTTGACTCTCTGTTCTaGCCTCTCCTGTCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: ICRTDTIHVRTHRLDSLPFDSLF*PLLSPV
Trigger: CACTGGAGACAGGAGAGGGCAGAACAGAGAGTCAAA...GGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCTGTCCTACAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR CCA 90 bp ATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGACCCATACGTACTTCTaGGCACTTACCTTTTACCTT +
Preference number: 4 (lower is better)
Translates to: IHVRTHRLDSLPNTHGARTHTYF*ALTFYL
Trigger: AAGGTAAAAGGTAAGTGCCCAGAAGTACGTATGGGT...CCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp ACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACTGGGCGCTGTGTGGCCTTaGTCAGAGCTGTGCTTTCCT +
Preference number: 4 (lower is better)
Translates to: TNACRWVSSYRFNRTQLLGAVWP*SELCFP
Trigger: AGGAAAGCACAGCTCTGATCAAGGCCACACAGCGCC...CAGTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CCA 90 bp TGTAGGACAGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATTGGCTCTTGAACTCATaGCCTTCTTGCTTTTCACCC +
Preference number: 4 (lower is better)
Translates to: CRTDTIHVRTHRLDSLPNWLLNS*PSCFSP
Trigger: GGGTGAAAAGCAAGAAGGCCATGAGTTCAAGAGCCA...ATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCTGTCCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp ACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACTGCAGGCATGTACCCAGTaGGGTACCTGGGAGGTTCTT +
Preference number: 4 (lower is better)
Translates to: TNACRWVSSYRFNRTQLLQACTQ*GTWEVL
Trigger: AAGAACCTCCCAGGTACCTCACTGGGTACATGCCTG...CAGTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR TCA 90 bp AGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGTTACTTCTTCAACCTTaGAGTGACTTCTACAGCCAC +
Preference number: 4 (lower is better)
Translates to: RHYSCEDSQAGLPTQYPWLLLQP*SDFYSH
Trigger: GTGGCTGTAGAAGTCACTTCAAGGTTGAAGAAGTAA...CCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp AGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGATTTTAGTGAGAAGGTaGCCATCCTTCAGTAGTAGC +
Preference number: 4 (lower is better)
Translates to: RHYSCEDSQAGLPTQYPWILVRR*PSFSSS
Trigger: GCTACTACTGAAGGATGGTCACCTTCTCACTAAAAT...CCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp ATTTGTAGGACAGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCGGAACAGGTCCTGTGTaGCTTTACTTTTCCTGTACA +
Preference number: 4 (lower is better)
Translates to: ICRTDTIHVRTHRLDSLPGTGPV*LYFSCT
Trigger: TGTACAGGAAAAGTAAAGGCACACAGGACCTGTTCC...GGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCTGTCCTACAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR GCA 90 bp ATTTGTAGGACAGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAGGTCCATACTCTGCTaGTTCCTGCTTACTTCTTCA +
Preference number: 4 (lower is better)
Translates to: ICRTDTIHVRTHRLDSLPRSILC*FLLTSS
Trigger: TGAAGAAGTAAGCAGGAAGCAGCAGAGTATGGACCT...GGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCTGTCCTACAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR CCA 90 bp AGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGAACTTCTGGATGTCCTaGTGCACATTCTTTGTCATC +
Preference number: 4 (lower is better)
Translates to: RHYSCEDSQAGLPTQYPWNFWMS*CTFFVI
Trigger: GATGACAAAGAATGTGCACCAGGACATCCAGAAGTT...CCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR TCA 90 bp GTAACTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTTCGGTGTCTGCATTaGATGCCAGAAGCTTGGCGG +
Preference number: 4 (lower is better)
Translates to: VTTNACRWVSSYRFNRTQLRCLH*MPEAWR
Trigger: CCGCCAAGCTTCTGGCATTCAATGCAGACACCGAAG...CTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR TCA 90 bp CTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACTTCCTTGAAGCGGGGTaGACATGGTACAAGGCCATC +
Preference number: 4 (lower is better)
Translates to: LPMLADGFLLIGLIGLSYFLEAG*TWYKAI
Trigger: GATGGCCTTGTACCATGTTCACCCCGCTTCAAGGAA...GTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CCA 90 bp ACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACTGGCATTGGCGCCTTGCTaGAGAAGAAGGCTGATCATG +
Preference number: 4 (lower is better)
Translates to: TNACRWVSSYRFNRTQLLALAPC*RRRLIM
Trigger: CATGATCAGCCTTCTTCTCCAGCAAGGCGCCAATGC...CAGTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR GCA 90 bp ATTTGTAGGACAGACACTATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCTTCTGGATGTCCTGGTaGACATTCTTTGTCATCTTT +
Preference number: 4 (lower is better)
Translates to: ICRTDTIHVRTHRLDSLPFWMSW*TFFVIF
Trigger: AAAGATGACAAAGAATGTGCACCAGGACATCCAGAA...GGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAATAGTGTCTGTCCTACAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS-3UTR CCA 90 bp TGGCTTTCAGTAACTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATACACAGATCTCGTGCTaGCGCTGTGTGGCCTTGATC +
Preference number: 4 (lower is better)
Translates to: WLSVTTNACRWVSSYRFNTQISC*RCVALI
Trigger: GATCAAGGCCACACAGCGCCAGCACGAGATCTGTGT...ATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTACTGAAAGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CCA 90 bp GTAACTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGTTGTTAGCTCAGGTCTaGGACCAGGGCCTTGGGAAA +
Preference number: 4 (lower is better)
Translates to: VTTNACRWVSSYRFNRTQLLAQV*DQGLGK
Trigger: TTTCCCAAGGCCCTGGTCCCAGACCTGAGCTAACAA...CTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR GCA 90 bp CTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACTCTTGGTTCTCAGCATaGCTAAAGCTCAGAAAGCCC +
Preference number: 4 (lower is better)
Translates to: LPMLADGFLLIGLIGLSYSWFSA*LKLRKP
Trigger: GGGCTTTCTGAGCTTTAGGCATGCTGAGAACCAAGA...GTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CCA 90 bp ACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACTGACGCTTGCAGCTTTGTaGATCCTTTTCACAGGCATG +
Preference number: 4 (lower is better)
Translates to: TNACRWVSSYRFNRTQLLTLAAL*ILFTGM
Trigger: CATGCCTGTGAAAAGGATCCACAAAGCTGCAAGCGT...CAGTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR GCA 90 bp TGGCTTTCAGTAACTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATCCCCAGCTCGTCAACTaGATCTGTGTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: WLSVTTNACRWVSSYRFNPQLVN*ICVFLH
Trigger: ATGGAGGAAAACACAGATGCAGTTGACGAGCTGGGG...ATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTACTGAAAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CCA 90 bp GTAACTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGGTACAAGGCCATCCTTaGTATCAAAACTGTGTCTGG +
Preference number: 4 (lower is better)
Translates to: VTTNACRWVSSYRFNRTQVQGHP*YQNCVW
Trigger: CCAGACACAGTTTTGATACCAAGGATGGCCTTGTAC...CTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CCA 90 bp CTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACTATCAAAACTGTGTCTaGCCTCTTTTGTTGTTAGCT +
Preference number: 4 (lower is better)
Translates to: LPMLADGFLLIGLIGLSYYQNCV*PLLLLA
Trigger: AGCTAACAACAAAAGAGGCCAGACACAGTTTTGATA...GTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CAA 90 bp CTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCCTGGGTTGGGCAGCTGGGGCTTCAAAATaGCCCTTGCAGGGCAGTGGC +
Preference number: 5 (lower is better)
Translates to: LTGWTPYPIPMVPGLGWAAGASK*PLQGSG
Trigger: GCCACTGCCCTGCAAGGGCAATTTTGAAGCCCCAGC...TGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS GCA 90 bp GGGTCATTGGCACCAGGCTCCTTGAAAGCCCTGGTCTGCAGCTGCTaGTGTGTCTGTATGTTTGCCTCCTTTCCCGGCAAGGCTGCACCC +
Preference number: 5 (lower is better)
Translates to: GSLAPGSLKALVCSC*CVCMFASFPGKAAP
Trigger: GGGTGCAGCCTTGCCGGGAAAGGAGGCAAACATACAGACACAGCAGCAGCTGCAGACCAGGGCTTTCAAGGAGCCTGGTGCCAATGACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS GCA 90 bp CTTTCCAGCCCATCGGCGGCTGTGTGCTGCAGCTCAGGGCAGCTTTaGTTTGACTCTCTGTTCTGCCCTCTCCTGTCTCCAGTGAGAGAC +
Preference number: 5 (lower is better)
Translates to: LSSPSAAVCCSSGQL*FDSLFCPLLSPVRD
Trigger: GTCTCTCACTGGAGACAGGAGAGGGCAGAACAGAGAGTCAAAGCAAAGCTGCCCTGAGCTGCAGCACACAGCCGCCGATGGGCTGGAAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS GCA 90 bp TCAGGGTCATTGGCACCAGGCTCCTTGAAAGCCCTGGTCTGCAGCTaGTGCTGTGTCTGTATGTTTGCCTCCTTTCCCGGCAAGGCTGCA +
Preference number: 5 (lower is better)
Translates to: SGSLAPGSLKALVCS*CCVCMFASFPGKAA
Trigger: TGCAGCCTTGCCGGGAAAGGAGGCAAACATACAGACACAGCAGCAGCTGCAGACCAGGGCTTTCAAGGAGCCTGGTGCCAATGACCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS GCA 90 bp CACTGGCGGTTCCCAAGGTGCGCGCTGGGGCTTCAAAATTGCCCTTaGAGGGCAGTGGCTTCAGGAACAGGTCCTGTGTGCCTTTACTTT +
Preference number: 5 (lower is better)
Translates to: HWRFPRCALGLQNCP*RAVASGTGPVCLYF
Trigger: AAAGTAAAGGCACACAGGACCTGTTCCTGAAGCCACTGCCCTGCAAGGGCAATTTTGAAGCCCCAGCGCGCACCTTGGGAACCGCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 90 bp GTGAGTTGTGTTCCAGAGCTTCAATGGGCTGTCAGAACCCCAGCCTaGGGCTGGCGCACGAGGCTCACTTCCATGGCTAGCTTCTTCCAT +
Preference number: 5 (lower is better)
Translates to: VSCVPELQWAVRTPA*GWRTRLTSMASFFH
Trigger: ATGGAAGAAGCTAGCCATGGAAGTGAGCCTCGTGCGCCAGCCCCAGGCTGGGGTTCTGACAGCCCATTGAAGCTCTGGAACACAACTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS-3UTR CAA 90 bp ATTCATGTGAGGACTCACAGGCTGGACTCCCTACCCAATACCCATGGTGCCAGGCAGGGCAGCTTTGCTTaGACTCTCTGTTCTGCCCTC +
Preference number: 5 (lower is better)
Translates to: IHVRTHRLDSLPNTHGARQGSFA*TLCSAL
Trigger: GAGGGCAGAACAGAGAGTCAAAGCAAAGCTGCCCTG...CCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCTGTGAGTCCTCACATGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS TCA 90 bp CTAGAAGAATCTTCACACAGATCTCGTGCTGGCGCTGTGTGGCCTTaGTCAGAGCTGTGCTTTCCTCTCGGTCTCGGGCTTCGATGTTGC +
Preference number: 5 (lower is better)
Translates to: LEESSHRSRAGAVWP*SELCFPLGLGLRCC
Trigger: GCAACATCGAAGCCCGAGACCGAGAGGAAAGCACAGCTCTGATCAAGGCCACACAGCGCCAGCACGAGATCTGTGTGAAGATTCTTCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109855.8
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS TCA 90 bp CAAGGTGGACTTTCTCCCAGGCCAGGATCTCTTCCTCCAATATCCTaGACTCACTGTCGGATAGCCTGCCTCGCAGTTCTTCATCCGCGA +
Preference number: 5 (lower is better)
Translates to: QGGLSPRPGSLPPIS*THCRIACLAVLHPR
Trigger: TCGCGGATGAAGAACTGCGAGGCAGGCTATCCGACAGTGAGTTCAGGATATTGGAGGAAGAGATCCTGGCCTGGGAGAAAGTCCACCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS TCA 90 bp CATTCTCTCTTGATGGAAGGTCAGGGTCATTGGCACCAGGCTCCTTaGAAGCCCTGGTCTGCAGCTGCTGCTGTGTCTGTATGTTTGCCT +
Preference number: 5 (lower is better)
Translates to: HSLLMEGQGHWHQAP*KPWSAAAAVSVCLP
Trigger: AGGCAAACATACAGACACAGCAGCAGCTGCAGACCAGGGCTTTCAAGGAGCCTGGTGCCAATGACCCTGACCTTCCATCAAGAGAGAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS-3UTR CAA 90 bp GGGATGGGCAGAGGAGGTTGCAGGTTCACATCCTTGCTGCAGGGTGATGGTGATTCCTTTCTTTGGCGTTaGAAAGCCTGTTGGCATCAC +
Preference number: 5 (lower is better)
Translates to: GMGRGGCRFTSLLQGDGDSFLWR*KACWHH
Trigger: GTGATGCCAACAGGCTTTCAAACGCCAAAGAAAGGA...ATCACCATCACCCTGCAGCAAGGATGTGAACCTGCAACCTCCTCTGCCCATCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS TCA 90 bp GGCTTCGATGTTGCAGTCATACCACAGCAAGAGGCTCACCATTTCTaGCTGGCCGTGAGCACAGGCGTAGTGAAGAGCAGTCCTTTTCTT +
Preference number: 5 (lower is better)
Translates to: GFDVAVIPQQEAHHF*LAVSTGVVKSSPFL
Trigger: AAGAAAAGGACTGCTCTTCACTACGCCTGTGCTCACGGCCAGTCAGAAATGGTGAGCCTCTTGCTGTGGTATGACTGCAACATCGAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109855.8
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS TCA 90 bp GTCTCAGGTCCTTTTCTAGGGCCTTCAGTTCTGCGATCACTGTCCTaGTTTCAGAGTGCTGAGTCCACTCCACACTCCCACCACATTGCT +
Preference number: 5 (lower is better)
Translates to: VSGPFLGPSVLRSLS*FQSAESTPHSHHIA
Trigger: AGCAATGTGGTGGGAGTGTGGAGTGGACTCAGCACTCTGAAATCAGGACAGTGATCGCAGAACTGAAGGCCCTAGAAAAGGACCTGAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS GCA 90 bp TCTGTATGTTTGCCTCCTTTCCCGGCAAGGCTGCACCCTGCTGTTTaGTCTCTAGAGGAACTGATCGGGATTCCATGTCTTCCCTCCATT +
Preference number: 5 (lower is better)
Translates to: SVCLPPFPARLHPAV*SLEELIGIPCLPSI
Trigger: AATGGAGGGAAGACATGGAATCCCGATCAGTTCCTCTAGAGAGCAAACAGCAGGGTGCAGCCTTGCCGGGAAAGGAGGCAAACATACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS TCA 90 bp ATTGTAGGCCAGGGTAGTGGGGTCCGACGTCAGGTGAGTTTTTCCTaGGACATCAGGTGGTCGCTCTTCCTTGAGGTAAACATTAGCGTT +
Preference number: 5 (lower is better)
Translates to: IVGQGSGVRRQVSFS*DIRWSLFLEVNISV
Trigger: AACGCTAATGTTTACCTCAAGGAAGAGCGACCACCTGATGTCTCAGGAAAAACTCACCTGACGTCGGACCCCACTACCCTGGCCTACAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS TCA 90 bp TCTAGGGCCTTCAGTTCTGCGATCACTGTCCTGATTTCAGAGTGCTaGGTCCACTCCACACTCCCACCACATTGCTCCTTTTCCCTTTGT +
Preference number: 5 (lower is better)
Translates to: SRAFSSAITVLISEC*VHSTLPPHCSFSLC
Trigger: ACAAAGGGAAAAGGAGCAATGTGGTGGGAGTGTGGAGTGGACTCAGCACTCTGAAATCAGGACAGTGATCGCAGAACTGAAGGCCCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS-3UTR CAA 90 bp GGGATGGGCAGAGGAGGTTGCAGGTTCACATCCTTGCTGCAGGGTGATGGTGATTGGTTTCATAGTTTTTaGCGACTGGCTCTTGAACTC +
Preference number: 5 (lower is better)
Translates to: GMGRGGCRFTSLLQGDGDWFHSF*RLALEL
Trigger: GAGTTCAAGAGCCAGTCGCAAAAAACTATGAAACCA...ATCACCATCACCCTGCAGCAAGGATGTGAACCTGCAACCTCCTCTGCCCATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137933.2
CDS TCA 90 bp CCCTCTCCTGTCTCCAGTGAGAGACTCTCTCCCATGCGCTTTCACTaGAGGAACTTCTGGATGTCCTGGTGCACATTCTTTGTCATCTTT +
Preference number: 5 (lower is better)
Translates to: PSPVSSERLSPMRFH*RNFWMSWCTFFVIF
Trigger: AAAGATGACAAAGAATGTGCACCAGGACATCCAGAAGTTCCTTCAGTGAAAGCGCATGGGAGAGAGTCTCTCACTGGAGACAGGAGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS TCA 90 bp CGGCTGAGTATTCTCGCTGCTGTCAAGATTCTTTTGTTCCAGCTGTaGTGTCCCCTCCGAATCCACTTCTGCTGTTGCCTGTTCCATATC +
Preference number: 5 (lower is better)
Translates to: RLSILAAVKILLFQL*CPLRIHFCCCLFHI
Trigger: GATATGGAACAGGCAACAGCAGAAGTGGATTCGGAGGGGACATCACAGCTGGAACAAAAGAATCTTGACAGCAGCGAGAATACTCAGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 90 bp TCACACTTGTTTAGCAGATTCTCAGAGACACTCTCGCTTTCAAGGTaGACTTTCTCCCAGGCCAGGATCTCTTCCTCCAATATCCTGAAC +
Preference number: 5 (lower is better)
Translates to: SHLFSRFSETLSLSR*TFSQARISSSNILN
Trigger: GTTCAGGATATTGGAGGAAGAGATCCTGGCCTGGGAGAAAGTCCACCTTGAAAGCGAGAGTGTCTCTGAGAATCTGCTAAACAAGTGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS-3UTR CAA 90 bp GTAACTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGGAGCATCTTCTGCACTaGGGGTATGTCCCCCACGCT +
Preference number: 5 (lower is better)
Translates to: VTTNACRWVSSYRFNRTQEHLLH*GYVPHA
Trigger: AGCGTGGGGGACATACCCCAAGTGCAGAAGATGCTC...CTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CAA 90 bp CTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACTCTGGGACCAGGGCCTaGGGAAAGCACTTGAAAGGT +
Preference number: 5 (lower is better)
Translates to: LPMLADGFLLIGLIGLSYSGTRA*GKHLKG
Trigger: ACCTTTCAAGTGCTTTCCCAAGGCCCTGGTCCCAGA...GTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS CCA 90 bp CGCACCCAGCTTTTCAAGTGGAGCACTTCTTCTTCCAAGTTCTTCTaGTTCTCGAGCAGGTGTCTACACTTCTTCTGTTCTGTTTTGATC +
Preference number: 5 (lower is better)
Translates to: RTQLFKWSTSSSKFF*FSSRCLHFFCSVLI
Trigger: GATCAAAACAGAACAGAAGAAGTGTAGACACCTGCTCGAGAACCAGAAGAACTTGGAAGAAGAAGTGCTCCACTTGAAAAGCTGGGTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS-3UTR CAA 90 bp CTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACGTATGTCCCCCACGCTaGCAGCTTTGTGGATCCTTT +
Preference number: 5 (lower is better)
Translates to: LPMLADGFLLIGLIGLSYVCPPR*QLCGSF
Trigger: AAAGGATCCACAAAGCTGCAAGCGTGGGGGACATAC...GTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CAA 90 bp ACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACTGAGATGCATTGGCGCCTaGCTGGAGAAGAAGGCTGAT +
Preference number: 5 (lower is better)
Translates to: TNACRWVSSYRFNRTQLLRCIGA*LEKKAD
Trigger: ATCAGCCTTCTTCTCCAGCAAGGCGCCAATGCATCT...CAGTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CAA 90 bp TGGCTTTCAGTAACTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATACTTCGGTGTCTGCATaGAATGCCAGAAGCTTGGCG +
Preference number: 5 (lower is better)
Translates to: WLSVTTNACRWVSSYRFNTSVSA*NARSLA
Trigger: CGCCAAGCTTCTGGCATTCAATGCAGACACCGAAGT...ATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTACTGAAAGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CAA 90 bp CTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACCTTTTGTTGTCTTCCTaGAAGCGGGGTGAACATGGT +
Preference number: 5 (lower is better)
Translates to: LPMLADGFLLIGLIGLSYLLLSS*KRGEHG
Trigger: ACCATGTTCACCCCGCTTCAAGGAAGACAACAAAAG...GTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS CCA 90 bp TCTTCAAATTCTAAAACACCTTCTCTCTCCAGCTTGACATCTGTCTaGAACTTGGCAGCTTCAGTTACTGGAAATTCTTTCATTTGTGGC +
Preference number: 5 (lower is better)
Translates to: SSNSKTPSLSSLTSV*NLAASVTGNSFICG
Trigger: GCCACAAATGAAAGAATTTCCAGTAACTGAAGCTGCCAAGTTCCAGACAGATGTCAAGCTGGAGAGAGAAGGTGTTTTAGAATTTGAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS-3UTR CAA 90 bp CTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATAGGACTCAGCTACAAAAACAGCGTAACTTaGTGCAGTAGCTCCATAGAT +
Preference number: 5 (lower is better)
Translates to: LPMLADGFLLIGLIGLSYKNSVT*CSSSID
Trigger: ATCTATGGAGCTACTGCACAAAGTTACGCTGTTTTT...GTAGCTGAGTCCTATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CAA 90 bp TGGCTTTCAGTAACTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATGCCTTGGGAAAGCACTaGAAAGGTTTCAAAAACAGC +
Preference number: 5 (lower is better)
Translates to: WLSVTTNACRWVSSYRFNALGKH*KGFKNS
Trigger: GCTGTTTTTGAAACCTTTCAAGTGCTTTCCCAAGGC...ATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTACTGAAAGCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS-3UTR CAA 90 bp TGGCTTTCAGTAACTACCAATGCTTGCAGATGGGTTTCTTCTTATCGGTTTAATTTTTCCTCCATCCTTTaGTTGTCTTCCTTGAAGCGG +
Preference number: 5 (lower is better)
Translates to: WLSVTTNACRWVSSYRFNFSSIL*LSSLKR
Trigger: CCGCTTCAAGGAAGACAACAAAAGGATGGAGGAAAA...ATTAAACCGATAAGAAGAAACCCATCTGCAAGCATTGGTAGTTACTGAAAGCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109855.8
CDS TCA 90 bp GGCAAAGCTTGTTTTAGAGTAGCATTCAGGACATGCATCTACTTCTaGATTGCCATCTGCACAAATTTCAAGTTCCTTTTCTTTGTGTTT +
Preference number: 5 (lower is better)
Translates to: GKACFRVAFRTCIYF*IAICTNFKFLFFVF
Trigger: AAACACAAAGAAAAGGAACTTGAAATTTGTGCAGATGGCAATTCAGAAGTAGATGCATGTCCTGAATGCTACTCTAAAACAAGCTTTGCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118112.9
CDS GCA 90 bp ACCTTAGAATTGAATAGGACTCAGTACTTTCAGCTGCTTCTAGATTaGTGTCTTGGCAAATTTCAAGTCCCTTTTCTTCAAATTCTAAAA +
Preference number: 5 (lower is better)
Translates to: TLELNRTQYFQLLLD*CLGKFQVPFLQILK
Trigger: TTTTAGAATTTGAAGAAAAGGGACTTGAAATTTGCCAAGACAGCAATCTAGAAGCAGCTGAAAGTACTGAGTCCTATTCAATTCTAAGGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS TCA 72 bp GGCTGGGCCAGGCTACCCTCTTCTGCATGGCGGTGCTaGCGTCCAAGCATCCCTCCTCCAGGAGCCGTCGCT +
Preference number: 6 (lower is better)
Translates to: GWARLPSSAWRC*RPSIPPPGAVA
Trigger: AGCGACGGCTCCTGGAGGAGGGATGCTTGGACGTCAGCACCGCCATGCAGAAGAGGGTAGCCTGGCCCAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS CCA 72 bp GCTCTCCTCCTCAGGCAGGGGCTGGATCAGCGTGGTTaGATCTGCAGGTGCGCTCTGGGCTTGTGGGCACGT +
Preference number: 6 (lower is better)
Translates to: ALLLRQGLDQRG*ICRCALGLWAR
Trigger: ACGTGCCCACAAGCCCAGAGCGCACCTGCAGATCCAACCACGCTGATCCAGCCCCTGCCTGAGGAGGAGAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 72 bp GCTTGCTCTCCTCCTCAGGCAGGGGCTGGATCAGCGTaGTTGGATCTGCAGGTGCGCTCTGGGCTTGTGGGC +
Preference number: 6 (lower is better)
Translates to: ACSPPQAGAGSA*LDLQVRSGLVG
Trigger: GCCCACAAGCCCAGAGCGCACCTGCAGATCCAACCACGCTGATCCAGCCCCTGCCTGAGGAGGAGAGCAAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CAA 72 bp TGCTCTCCTCCTCAGGCAGGGGCTGGATCAGCGTGGTaGGATCTGCAGGTGCGCTCTGGGCTTGTGGGCACG +
Preference number: 6 (lower is better)
Translates to: CSPPQAGAGSAW*DLQVRSGLVGT
Trigger: CGTGCCCACAAGCCCAGAGCGCACCTGCAGATCCAACCACGCTGATCCAGCCCCTGCCTGAGGAGGAGAGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 72 bp GTTCCAGAGCTTCAATGGGCTGTCAGAACCCCAGCCTaGGGCTGGCGCACGAGGCTCACTTCCATGGCTAGC +
Preference number: 6 (lower is better)
Translates to: VPELQWAVRTPA*GWRTRLTSMAS
Trigger: GCTAGCCATGGAAGTGAGCCTCGTGCGCCAGCCCCAGGCTGGGGTTCTGACAGCCCATTGAAGCTCTGGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 72 bp CTGGCGGTTCCCAAGGTGCGCGCTGGGGCTTCAAAATaGCCCTTGCAGGGCAGTGGCTTCAGGAACAGGTCC +
Preference number: 6 (lower is better)
Translates to: LAVPKVRAGASK*PLQGSGFRNRS
Trigger: GGACCTGTTCCTGAAGCCACTGCCCTGCAAGGGCAATTTTGAAGCCCCAGCGCGCACCTTGGGAACCGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS TCA 72 bp CAGCACCTGCTGGAGGGGACTTCTCAAATTCCGGTGTaGCCACAGGCTCGCGGGGGCTCCATGCTTCCTTCT +
Preference number: 6 (lower is better)
Translates to: QHLLEGTSQIPV*PQARGGSMLPS
Trigger: AGAAGGAAGCATGGAGCCCCCGCGAGCCTGTGGTCACACCGGAATTTGAGAAGTCCCCTCCAGCAGGTGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS GCA 72 bp TGGCGGTTCCCAAGGTGCGCGCTGGGGCTTCAAAATTaGCCTTGCAGGGCAGTGGCTTCAGGAACAGGTCCT +
Preference number: 6 (lower is better)
Translates to: WRFPRCALGLQN*PCRAVASGTGP
Trigger: AGGACCTGTTCCTGAAGCCACTGCCCTGCAAGGGCAATTTTGAAGCCCCAGCGCGCACCTTGGGAACCGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 72 bp GAGCTTCAATGGGCTGTCAGAACCCCAGCCTGGGGCTaGCGCACGAGGCTCACTTCCATGGCTAGCTTCTTC +
Preference number: 6 (lower is better)
Translates to: ELQWAVRTPAWG*RTRLTSMASFF
Trigger: GAAGAAGCTAGCCATGGAAGTGAGCCTCGTGCGCCAGCCCCAGGCTGGGGTTCTGACAGCCCATTGAAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 72 bp GTTCCCAAGGTGCGCGCTGGGGCTTCAAAATTGCCCTaGCAGGGCAGTGGCTTCAGGAACAGGTCCTGTGTG +
Preference number: 6 (lower is better)
Translates to: VPKVRAGASKLP*QGSGFRNRSCV
Trigger: CACACAGGACCTGTTCCTGAAGCCACTGCCCTGCAAGGGCAATTTTGAAGCCCCAGCGCGCACCTTGGGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS GCA 72 bp GCACCAGGCTCCTTGAAAGCCCTGGTCTGCAGCTGCTaGTGTGTCTGTATGTTTGCCTCCTTTCCCGGCAAG +
Preference number: 6 (lower is better)
Translates to: APGSLKALVCSC*CVCMFASFPGK
Trigger: CTTGCCGGGAAAGGAGGCAAACATACAGACACAGCAGCAGCTGCAGACCAGGGCTTTCAAGGAGCCTGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS GCA 72 bp TTGGCACCAGGCTCCTTGAAAGCCCTGGTCTGCAGCTaGTGCTGTGTCTGTATGTTTGCCTCCTTTCCCGGC +
Preference number: 6 (lower is better)
Translates to: LAPGSLKALVCS*CCVCMFASFPG
Trigger: GCCGGGAAAGGAGGCAAACATACAGACACAGCAGCAGCTGCAGACCAGGGCTTTCAAGGAGCCTGGTGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS GCA 72 bp ACGGGACAAATGCTTTCCAGCCCATCGGCGGCTGTGTaGTGCAGCTCAGGGCAGCTTTGCTTTGACTCTCTG +
Preference number: 6 (lower is better)
Translates to: TGQMLSSPSAAV*CSSGQLCFDSL
Trigger: CAGAGAGTCAAAGCAAAGCTGCCCTGAGCTGCAGCACACAGCCGCCGATGGGCTGGAAAGCATTTGTCCCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 72 bp TCTTTCATCGGAGTGAGTTGTGTTCCAGAGCTTCAATaGGCTGTCAGAACCCCAGCCTGGGGCTGGCGCACG +
Preference number: 6 (lower is better)
Translates to: SFIGVSCVPELQ*AVRTPAWGWRT
Trigger: CGTGCGCCAGCCCCAGGCTGGGGTTCTGACAGCCCATTGAAGCTCTGGAACACAACTCACTCCGATGAAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 72 bp GATCTGCAGGTGCGCTCTGGGCTTGTGGGCACGTCTTaGAGAGGTCTGGATTCGACGGCTGAGTATTCTCGC +
Preference number: 6 (lower is better)
Translates to: DLQVRSGLVGTS*RGLDSTAEYSR
Trigger: GCGAGAATACTCAGCCGTCGAATCCAGACCTCTCAAAGACGTGCCCACAAGCCCAGAGCGCACCTGCAGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS TCA 72 bp ATCTGCAGGTGCGCTCTGGGCTTGTGGGCACGTCTTTaGGAGGTCTGGATTCGACGGCTGAGTATTCTCGCT +
Preference number: 6 (lower is better)
Translates to: ICRCALGLWARL*EVWIRRLSILA
Trigger: AGCGAGAATACTCAGCCGTCGAATCCAGACCTCTCAAAGACGTGCCCACAAGCCCAGAGCGCACCTGCAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS GCA 72 bp TTTCCAAGGCCACCTTCCTCCTGTCTGGGAGAGGTCTaGAGTGTTACAGAGACCAGCGCAGCGCTCACATCT +
Preference number: 6 (lower is better)
Translates to: FPRPPSSCLGEV*SVTETSAALTS
Trigger: AGATGTGAGCGCTGCGCTGGTCTCTGTAACACTGCAGACCTCTCCCAGACAGGAGGAAGGTGGCCTTGGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS GCA 72 bp CCACAGGCTCGCGGGGGCTCCATGCTTCCTTCTCACTaGCCTTTGCGTCTTTTATACACAAGTCAGGAACAC +
Preference number: 6 (lower is better)
Translates to: PQARGGSMLPSH*PLRLLYTSQEH
Trigger: GTGTTCCTGACTTGTGTATAAAAGACGCAAAGGGCAGTGAGAAGGAAGCATGGAGCCCCCGCGAGCCTGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 72 bp CCCCAGCCTGGGGCTGGCGCACGAGGCTCACTTCCATaGCTAGCTTCTTCCATTTCATTTACTTGGGATTTC +
Preference number: 6 (lower is better)
Translates to: PQPGAGARGSLP*LASSISFTWDF
Trigger: GAAATCCCAAGTAAATGAAATGGAAGAAGCTAGCCATGGAAGTGAGCCTCGTGCGCCAGCCCCAGGCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 72 bp AGAAGCCGTGTCCATCTCTGGCCCCTGAGATCTTTCTaGAAGTTGTACAGGTGGAGGGCTCGTCTGCTTGGC +
Preference number: 6 (lower is better)
Translates to: RSRVHLWPLRSF*KLYRWRARLLG
Trigger: GCCAAGCAGACGAGCCCTCCACCTGTACAACTTCAAGAAAGATCTCAGGGGCCAGAGATGGACACGGCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS TCA 72 bp CAGGGTAGTGGGGTCCGACGTCAGGTGAGTTTTTCCTaGGACATCAGGTGGTCGCTCTTCCTTGAGGTAAAC +
Preference number: 6 (lower is better)
Translates to: QGSGVRRQVSFS*DIRWSLFLEVN
Trigger: GTTTACCTCAAGGAAGAGCGACCACCTGATGTCTCAGGAAAAACTCACCTGACGTCGGACCCCACTACCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS GCA 72 bp TTGCCTCCTTTCCCGGCAAGGCTGCACCCTGCTGTTTaGTCTCTAGAGGAACTGATCGGGATTCCATGTCTT +
Preference number: 6 (lower is better)
Translates to: LPPFPARLHPAV*SLEELIGIPCL
Trigger: AAGACATGGAATCCCGATCAGTTCCTCTAGAGAGCAAACAGCAGGGTGCAGCCTTGCCGGGAAAGGAGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS GCA 72 bp TGCCCTCTCCTGTCTCCAGTGAGAGACTCTCTCCCATaGGCTTTCACTGAAGGAACTTCTGGATGTCCTGGT +
Preference number: 6 (lower is better)
Translates to: CPLLSPVRDSLP*AFTEGTSGCPG
Trigger: ACCAGGACATCCAGAAGTTCCTTCAGTGAAAGCGCATGGGAGAGAGTCTCTCACTGGAGACAGGAGAGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS GCA 72 bp CTCGCGGGGGCTCCATGCTTCCTTCTCACTGCCCTTTaGGTCTTTTATACACAAGTCAGGAACACTCCTAGC +
Preference number: 6 (lower is better)
Translates to: LAGAPCFLLTAL*VFYTQVRNTPS
Trigger: GCTAGGAGTGTTCCTGACTTGTGTATAAAAGACGCAAAGGGCAGTGAGAAGGAAGCATGGAGCCCCCGCGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CAA 72 bp TTTGCCTCCTTTCCCGGCAAGGCTGCACCCTGCTGTTaGCTCTCTAGAGGAACTGATCGGGATTCCATGTCT +
Preference number: 6 (lower is better)
Translates to: FASFPGKAAPCC*LSRGTDRDSMS
Trigger: AGACATGGAATCCCGATCAGTTCCTCTAGAGAGCAAACAGCAGGGTGCAGCCTTGCCGGGAAAGGAGGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 72 bp TCCTTAGCATTCTCTCTTGATGGAAGGTCAGGGTCATaGGCACCAGGCTCCTTGAAAGCCCTGGTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: SLAFSLDGRSGS*APGSLKALVCS
Trigger: GCTGCAGACCAGGGCTTTCAAGGAGCCTGGTGCCAATGACCCTGACCTTCCATCAAGAGAGAATGCTAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 72 bp CGTGTCCATCTCTGGCCCCTGAGATCTTTCTTGAAGTaGTACAGGTGGAGGGCTCGTCTGCTTGGCTTGATG +
Preference number: 6 (lower is better)
Translates to: RVHLWPLRSFLK*YRWRARLLGLM
Trigger: CATCAAGCCAAGCAGACGAGCCCTCCACCTGTACAACTTCAAGAAAGATCTCAGGGGCCAGAGATGGACACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 90 bp TTCCTCATCAGAAGCCGTGTCCATCTCTGGCCCCTGAGATCTTTCTaGAAGTTGTACAGGTGGAGGGCTCGTCTGCTTGGCTTGATGCTG +
Preference number: 6 (lower is better)
Translates to: FLIRSRVHLWPLRSF*KLYRWRARLLGLML
Trigger: CAGCATCAAGCCAAGCAGACGAGCCCTCCACCTGTACAACTTCAAGAAAGATCTCAGGGGCCAGAGATGGACACGGCTTCTGATGAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS TCA 72 bp GCTTTGACTCTCTGTTCTGCCCTCTCCTGTCTCCAGTaGGAGACTCTCTCCCATGCGCTTTCACTGAAGGAA +
Preference number: 6 (lower is better)
Translates to: ALTLCSALSCLQ*ETLSHALSLKE
Trigger: TTCCTTCAGTGAAAGCGCATGGGAGAGAGTCTCTCACTGGAGACAGGAGAGGGCAGAACAGAGAGTCAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS TCA 72 bp AGCAGGTTCATCTTTCTCGTCAGCAGGAGACAGCTCTaGGACTTCCAGGTCCATACTCTGCTGCTTCCTGCT +
Preference number: 6 (lower is better)
Translates to: SRFIFLVSRRQL*DFQVHTLLLPA
Trigger: AGCAGGAAGCAGCAGAGTATGGACCTGGAAGTCTCAGAGCTGTCTCCTGCTGACGAGAAAGATGAACCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS TCA 72 bp CCTTTTCTAGGGCCTTCAGTTCTGCGATCACTGTCCTaGTTTCAGAGTGCTGAGTCCACTCCACACTCCCAC +
Preference number: 6 (lower is better)
Translates to: PFLGPSVLRSLS*FQSAESTPHSH
Trigger: GTGGGAGTGTGGAGTGGACTCAGCACTCTGAAATCAGGACAGTGATCGCAGAACTGAAGGCCCTAGAAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS CCA 72 bp CCGTTCTCTAGAAGAATCTTCACACAGATCTCGTGCTaGCGCTGTGTGGCCTTGATCAGAGCTGTGCTTTCC +
Preference number: 6 (lower is better)
Translates to: PFSRRIFTQISC*RCVALIRAVLS
Trigger: GGAAAGCACAGCTCTGATCAAGGCCACACAGCGCCAGCACGAGATCTGTGTGAAGATTCTTCTAGAGAACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109855.8
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CCA 72 bp TTCAACCTTGAAGTGACTTCTACAGCCACCCGGAAGTaGATCCTCCACGGGACAAATGCTTTCCAGCCCATC +
Preference number: 6 (lower is better)
Translates to: FNLEVTSTATRK*ILHGTNAFQPI
Trigger: GATGGGCTGGAAAGCATTTGTCCCGTGGAGGATCCACTTCCGGGTGGCTGTAGAAGTCACTTCAAGGTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 72 bp ACGTCAATATCCCCAAATTCGAGCATCTTCTGCACTTaGGGTATGTCCCCCACGCTTGCAGCTTTGTGGATC +
Preference number: 6 (lower is better)
Translates to: TSISPNSSIFCT*GMSPTLAALWI
Trigger: GATCCACAAAGCTGCAAGCGTGGGGGACATACCCCAAGTGCAGAAGATGCTCGAATTTGGGGATATTGACGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000109855.8
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS TCA 72 bp GTCTCCAGTGAGAGACTCTCTCCCATGCGCTTTCACTaGAGGAACTTCTGGATGTCCTGGTGCACATTCTTT +
Preference number: 6 (lower is better)
Translates to: VSSERLSPMRFH*RNFWMSWCTFF
Trigger: AAAGAATGTGCACCAGGACATCCAGAAGTTCCTTCAGTGAAAGCGCATGGGAGAGAGTCTCTCACTGGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS TCA 72 bp CCATACTCTGCTGCTTCCTGCTTACTTCTTCAACCTTaGAGTGACTTCTACAGCCACCCGGAAGTGGATCCT +
Preference number: 6 (lower is better)
Translates to: PYSAASCLLLQP*SDFYSHPEVDP
Trigger: AGGATCCACTTCCGGGTGGCTGTAGAAGTCACTTCAAGGTTGAAGAAGTAAGCAGGAAGCAGCAGAGTATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS TCA 72 bp TTCAGTTCTGCGATCACTGTCCTGATTTCAGAGTGCTaGGTCCACTCCACACTCCCACCACATTGCTCCTTT +
Preference number: 6 (lower is better)
Translates to: FSSAITVLISEC*VHSTLPPHCSF
Trigger: AAAGGAGCAATGTGGTGGGAGTGTGGAGTGGACTCAGCACTCTGAAATCAGGACAGTGATCGCAGAACTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS CCA 72 bp AACTGTGTCTGGCCTCTTTTGTTGTTAGCTCAGGTCTaGGACCAGGGCCTTGGGAAAGCACTTGAAAGGTTT +
Preference number: 6 (lower is better)
Translates to: NCVWPLLLLAQV*DQGLGKALERF
Trigger: AAACCTTTCAAGTGCTTTCCCAAGGCCCTGGTCCCAGACCTGAGCTAACAACAAAAGAGGCCAGACACAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109855.8
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 72 bp CCAGCTGTGATGTCCCCTCCGAATCCACTTCTGCTGTaGCCTGTTCCATATCTAGATATCGCCCTTGTTGAT +
Preference number: 6 (lower is better)
Translates to: PAVMSPPNPLLL*PVPYLDIALVD
Trigger: ATCAACAAGGGCGATATCTAGATATGGAACAGGCAACAGCAGAAGTGGATTCGGAGGGGACATCACAGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CAA 90 bp ACGCCTTGGGTGCCAGAAGATGCCTCTCTAACCTATCCTCGTCCTTaGTATCAAGCTTATATTCATCCTTTCTTGCTGTGGGCTCTGGGT +
Preference number: 6 (lower is better)
Translates to: TPWVPEDASLTYPRP*YQAYIHPFLLWALG
Trigger: ACCCAGAGCCCACAGCAAGAAAGGATGAATATAAGCTTGATACAAAGGACGAGGATAGGTTAGAGAGGCATCTTCTGGCACCCAAGGCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS TCA 72 bp AGGGCAGAATCACCCCAACTTTTTACTTCGGTCACGTaGCTCCTTTCTTTGGCGTTTGAAAGCCTGTTGGCA +
Preference number: 6 (lower is better)
Translates to: RAESPQLFTSVT*LLSLAFESLLA
Trigger: TGCCAACAGGCTTTCAAACGCCAAAGAAAGGAGTCACGTGACCGAAGTAAAAAGTTGGGGTGATTCTGCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 72 bp ATGGTACAAGGCCATCCTTGGTATCAAAACTGTGTCTaGCCTCTTTTGTTGTTAGCTCAGGTCTGGGACCAG +
Preference number: 6 (lower is better)
Translates to: MVQGHPWYQNCV*PLLLLAQVWDQ
Trigger: CTGGTCCCAGACCTGAGCTAACAACAAAAGAGGCCAGACACAGTTTTGATACCAAGGATGGCCTTGTACCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109855.8
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CCA 72 bp TTTAGCAGATTCTCAGAGACACTCTCGCTTTCAAGGTaGACTTTCTCCCAGGCCAGGATCTCTTCCTCCAAT +
Preference number: 6 (lower is better)
Translates to: FSRFSETLSLSR*TFSQARISSSN
Trigger: ATTGGAGGAAGAGATCCTGGCCTGGGAGAAAGTCCACCTTGAAAGCGAGAGTGTCTCTGAGAATCTGCTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CAA 72 bp GTTCCAGCTGTGATGTCCCCTCCGAATCCACTTCTGTaGCCTGTTCCATATCTAGATATCGCCCTTGTTGAT +
Preference number: 6 (lower is better)
Translates to: VPAVMSPPNPLL*PVPYLDIALVD
Trigger: ATCAACAAGGGCGATATCTAGATATGGAACAGGCAACAGAAGTGGATTCGGAGGGGACATCACAGCTGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS TCA 72 bp AAAGCCTGTTGGCATCACTGGACTTCAGCATGTGTCTaGTATCTAACTGCCAGTCGGTGCGTTTTGGTTTCA +
Preference number: 6 (lower is better)
Translates to: KACWHHWTSACV*YLTASRCVLVS
Trigger: TGAAACCAAAACGCACCGACTGGCAGTTAGATATCAGACACATGCTGAAGTCCAGTGATGCCAACAGGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CCA 72 bp CCCAACTTTTTACTTCGGTCACGTGACTCCTTTCTTTaGCGTTTGAAAGCCTGTTGGCATCACTGGACTTCA +
Preference number: 6 (lower is better)
Translates to: PNFLLRSRDSFL*RLKACWHHWTS
Trigger: TGAAGTCCAGTGATGCCAACAGGCTTTCAAACGCCAAAGAAAGGAGTCACGTGACCGAAGTAAAAAGTTGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS CAA 72 bp AGCTCGTCAACTGCATCTGTGTTTTCCTCCATCCTTTaGTTGTCTTCCTTGAAGCGGGGTGAACATGGTACA +
Preference number: 6 (lower is better)
Translates to: SSSTASVFSSIL*LSSLKRGEHGT
Trigger: TGTACCATGTTCACCCCGCTTCAAGGAAGACAACAAAAGGATGGAGGAAAACACAGATGCAGTTGACGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109855.8
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 72 bp TCATCTTGTTTTAAGGGGAACCTCAGAGTGCAGAGCTaGTCCCATGCCACTTCTTTATGCTGTGACCAGGTT +
Preference number: 6 (lower is better)
Translates to: SSCFKGNLRVQS*SHATSLCCDQV
Trigger: AACCTGGTCACAGCATAAAGAAGTGGCATGGGACAAGCTCTGCACTCTGAGGTTCCCCTTAAAACAAGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS TCA 72 bp GCATCATTGGTGTCTCTTAAATTTTCGATGTTGTTTTaGTCTCTTGCTTGGATCTCGCTCTCCCGCACCCAG +
Preference number: 6 (lower is better)
Translates to: ASLVSLKFSMLF*SLAWISLSRTQ
Trigger: CTGGGTGCGGGAGAGCGAGATCCAAGCAAGAGATCAAAACAACATCGAAAATTTAAGAGACACCAATGATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS TCA 72 bp GCTGTTGCCTGTTCCATATCTAGATATCGCCCTTGTTaGTCTGTGGCATCAGATATAATCCCCTCACACTTG +
Preference number: 6 (lower is better)
Translates to: AVACSISRYRPC*SVASDIIPSHL
Trigger: CAAGTGTGAGGGGATTATATCTGATGCCACAGATCAACAAGGGCGATATCTAGATATGGAACAGGCAACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS GCA 72 bp CTCGTCCTTTGTATCAAGCTTATATTCATCCTTTCTTaGTGTGGGCTCTGGGTCACTAACATCAGGTTTGGC +
Preference number: 6 (lower is better)
Translates to: LVLCIKLIFILS*CGLWVTNIRFG
Trigger: GCCAAACCTGATGTTAGTGACCCAGAGCCCACAGCAAGAAAGGATGAATATAAGCTTGATACAAAGGACGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CAA 72 bp TTTTTACTTCGGTCACGTGACTCCTTTCTTTGGCGTTaGAAAGCCTGTTGGCATCACTGGACTTCAGCATGT +
Preference number: 6 (lower is better)
Translates to: FLLRSRDSFLWR*KACWHHWTSAC
Trigger: ACATGCTGAAGTCCAGTGATGCCAACAGGCTTTCAAACGCCAAAGAAAGGAGTCACGTGACCGAAGTAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
ENSMUST00000137933.2
CDS TCA 72 bp TCTGTTGCCTGTTCCATATCTAGATATCGCCCTTGTTaGTCTGTGGCATCAGATATAATCCCCTCACACTTG +
Preference number: 6 (lower is better)
Translates to: SVACSISRYRPC*SVASDIIPSHL
Trigger: CAAGTGTGAGGGGATTATATCTGATGCCACAGATCAACAAGGGCGATATCTAGATATGGAACAGGCAACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS CCA 72 bp CTTTTCAAGTGGAGCACTTCTTCTTCCAAGTTCTTCTaGTTCTCGAGCAGGTGTCTACACTTCTTCTGTTCT +
Preference number: 6 (lower is better)
Translates to: LFKWSTSSSKFF*FSSRCLHFFCS
Trigger: AGAACAGAAGAAGTGTAGACACCTGCTCGAGAACCAGAAGAACTTGGAAGAAGAAGTGCTCCACTTGAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109856.8
CDS CAA 72 bp ACACCTTCTCTCTCCAGCTTGACATCTGTCTGGAACTaGGCAGCTTCAGTTACTGGAAATTCTTTCATTTGT +
Preference number: 6 (lower is better)
Translates to: TPSLSSLTSVWN*AASVTGNSFIC
Trigger: ACAAATGAAAGAATTTCCAGTAACTGAAGCTGCCAAGTTCCAGACAGATGTCAAGCTGGAGAGAGAAGGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9
CDS CCA 72 bp GTTAACATCTTCATAGATCTCGTCACCCTTCTGCGTTaGCTTGTTAATGACACACTGTACAGTTTCTTTACC +
Preference number: 6 (lower is better)
Translates to: VNIFIDLVTLLR*LVNDTLYSFFT
Trigger: GGTAAAGAAACTGTACAGTGTGTCATTAACAAGCCAACGCAGAAGGGTGACGAGATCTATGAAGATGTTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109856.8
ENSMUST00000118112.9