RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANKRD34B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045034

Ensembl transcript IDs: ENSMUST00000061594.13, ENSMUST00000168871.2

Found 169 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCTGGCTCCACCCATCGCCCCACAGGGAATGCTGGGATTACAGATaGCTGCACTACTGTCACGTGCATTCTGGGCATCCAAAGGGGCCA +
Preference number: 1 (lower is better)
Translates to: SWLHPSPHRECWDYR*LHYCHVHSGHPKGP
Trigger: TGGCCCCTTTGGATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCTGTGGGGCGATGGGTGGAGCCAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR GCA 90 bp CCCACAGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTaGATTCTGGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCAT +
Preference number: 1 (lower is better)
Translates to: PTGNAGITDACTTVT*ILGIQRGHSACRAH
Trigger: ATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR CCA 90 bp GGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTaGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCAT +
Preference number: 1 (lower is better)
Translates to: GMLGLQMPALLSRAF*ASKGAIRLAGPMSH
Trigger: ATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR GCA 90 bp GAGACAGGGTTTCTTAACTGCAGTGTAGACAGACTATCTGAGCCATaGGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGGG +
Preference number: 1 (lower is better)
Translates to: ETGFLNCSVDRLSEP*VSRDSPGSTHRPTG
Trigger: CCCTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATAGTCTGTCTACACTGCAGTTAAGAAACCCTGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR GCA 90 bp TCATTGGACTCACACCCTTGGTTTTCTAGTGCATCGGTTGCTCTTTaGTTCAGAACTGCCAGAGTGAAGAACTCTGTGAACACTATACTT +
Preference number: 1 (lower is better)
Translates to: SLDSHPWFSSASVAL*FRTARVKNSVNTIL
Trigger: AAGTATAGTGTTCACAGAGTTCTTCACTCTGGCAGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGAGTCCAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR GCA 90 bp TGTACATTTCAAAATGCTTATATCAAATTACCAAGAAAGGCCTCGTaGCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTG +
Preference number: 1 (lower is better)
Translates to: CTFQNAYIKLPRKAS*HLLGKEMKLEMMSL
Trigger: CAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGGCACGAGGCCTTTCTTGGTAATTTGATATAAGCATTTTGAAATGTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR TCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCGATGTTTTGGTTAGATaGAAAAACGTGGACCACATG +
Preference number: 2 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPDVLVR*KNVDHM
Trigger: CATGTGGTCCACGTTTTTTCATCTAACCAAAACATC...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR-3UTR GCA 90 bp CCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACACCCGGGATTACAGATGCCTaGACTACTGTCACGTGCATT +
Preference number: 2 (lower is better)
Translates to: PPVGQRNEAGDDVIGLTPGITDA*TTVTCI
Trigger: AATGCACGTGACAGTAGTGCAGGCATCTGTAATCCC...GGGTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR GCA 90 bp GGCCTCGTGCCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGAAGACTATCTGAGCCATaGGTTTCTAGGGATTCTCCT +
Preference number: 2 (lower is better)
Translates to: GLVPPVGQRNEAGDDVIGRLSEP*VSRDSP
Trigger: AGGAGAATCCCTAGAAACGCATGGCTCAGATAGTCT...TCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGGCACGAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR GCA 90 bp TTGGACTCACACCCTTGGTTTTCTAGTGCATCGGTTGCTCTTTGCTTCAGAACTTGCTGGGATTACAGATaGCTGCACTACTGTCACGTG +
Preference number: 2 (lower is better)
Translates to: LDSHPWFSSASVALCFRTCWDYR*LHYCHV
Trigger: CACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCA...AGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGAGTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR CAA 90 bp CAAAATGCTTATATCAAATTACCAAGAAAGGCCTCGTGCCACCTGTaGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACAC +
Preference number: 2 (lower is better)
Translates to: QNAYIKLPRKASCHL*GKEMKLEMMSLDSH
Trigger: GTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGGCACGAGGCCTTTCTTGGTAATTTGATATAAGCATTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR CCA 90 bp CCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACACCCTTTGAAAGCAATGTATaGCGTAAAAACAACAGGCTT +
Preference number: 2 (lower is better)
Translates to: PPVGQRNEAGDDVIGLTPFESNV*RKNNRL
Trigger: AAGCCTGTTGTTTTTACGCCATACATTGCTTTCAAA...GGGTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR GCA 90 bp TATATCAAATTACCAAGAAAGGCCTCGTGCCACCTGTTGGGCAAAGAAATGAAGTCTTTGCTTCAGAACTaGCAGAGTGAAGAACTCTGT +
Preference number: 2 (lower is better)
Translates to: YIKLPRKASCHLLGKEMKSLLQN*QSEELC
Trigger: ACAGAGTTCTTCACTCTGGCAGTTCTGAAGCAAAGA...CTTCATTTCTTTGCCCAACAGGTGGCACGAGGCCTTTCTTGGTAATTTGATATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR TCA 90 bp TATATCAAATTACCAAGAAAGGCCTCGTGCCACCTGTTGGGCAAAGAAATGAAGGATGTTTTGGTTAGATaGAAAAACGTGGACCACATG +
Preference number: 2 (lower is better)
Translates to: YIKLPRKASCHLLGKEMKDVLVR*KNVDHM
Trigger: CATGTGGTCCACGTTTTTTCATCTAACCAAAACATC...CTTCATTTCTTTGCCCAACAGGTGGCACGAGGCCTTTCTTGGTAATTTGATATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR CAA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCCACTGTGAACACTGCTaGCTCTGTCGATCTAGTTTT +
Preference number: 3 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPHCEHC*LCRSSF
Trigger: AAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTG...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR GCA 72 bp GGATTCTCCTGGCTCCACCCATCGCCCCACAGGGAATaGTGGGATTACAGATGCCTGCACTACTGTCACGTG +
Preference number: 3 (lower is better)
Translates to: GFSWLHPSPHRE*WDYRCLHYCHV
Trigger: CACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCTGTGGGGCGATGGGTGGAGCCAGGAGAATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR GCA 72 bp CACCCATCGCCCCACAGGGAATGCTGGGATTACAGATaGCTGCACTACTGTCACGTGCATTCTGGGCATCCA +
Preference number: 3 (lower is better)
Translates to: HPSPHRECWDYR*LHYCHVHSGHP
Trigger: TGGATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCTGTGGGGCGATGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR CCA 72 bp TTCTCCTGGCTCCACCCATCGCCCCACAGGGAATGCTaGGATTACAGATGCCTGCACTACTGTCACGTGCAT +
Preference number: 3 (lower is better)
Translates to: FSWLHPSPHREC*DYRCLHYCHVH
Trigger: ATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCTGTGGGGCGATGGGTGGAGCCAGGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR GCA 72 bp CATCGCCCCACAGGGAATGCTGGGATTACAGATGCCTaGACTACTGTCACGTGCATTCTGGGCATCCAAAGG +
Preference number: 3 (lower is better)
Translates to: HRPTGNAGITDA*TTVTCILGIQR
Trigger: CCTTTGGATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCTGTGGGGCGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR-3UTR CAA 90 bp TTGGACTCACACCCTTGGTTTTCTAGTGCATCGGTTGCTCTTTGCTTCAGAACTTTATTCCCAAACTTCTaGCTCCCCAGCCCCACCCCC +
Preference number: 3 (lower is better)
Translates to: LDSHPWFSSASVALCFRTLFPNF*LPSPTP
Trigger: GGGGGTGGGGCTGGGGAGCAAGAAGTTTGGGAATAA...AGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGAGTCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR CAA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCGCTTTGGTACGCGCATaGCTGCCTCGCATGGGGAGT +
Preference number: 3 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSALVRA*LPRMGS
Trigger: ACTCCCCATGCGAGGCAGCAATGCGCGTACCAAAGC...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR-3UTR CAA 90 bp CCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACACCCGTCAGAGGACAGCCTTaGGTATCAGTCATCCTTGTT +
Preference number: 3 (lower is better)
Translates to: PPVGQRNEAGDDVIGLTPVRGQP*VSVILV
Trigger: AACAAGGATGACTGATACCAAAGGCTGTCCTCTGAC...GGGTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR CAA 90 bp CCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACACCCCACTGTGAACACTGCTaGCTCTGTCGATCTAGTTTT +
Preference number: 3 (lower is better)
Translates to: PPVGQRNEAGDDVIGLTPHCEHC*LCRSSF
Trigger: AAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTG...GGGTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR-3UTR CAA 90 bp CCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACACCCTTTCTAGTGCATCGGTaGCTCTTTGCTTCAGAACTG +
Preference number: 3 (lower is better)
Translates to: PPVGQRNEAGDDVIGLTPFLVHR*LFASEL
Trigger: CAGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAA...GGGTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR GCA 72 bp TCACACCCTTGGTTTTCTAGTGCATCGGTTGCTCTTTaGTTCAGAACTGCCAGAGTGAAGAACTCTGTGAAC +
Preference number: 3 (lower is better)
Translates to: SHPWFSSASVAL*FRTARVKNSVN
Trigger: GTTCACAGAGTTCTTCACTCTGGCAGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR CCA 72 bp ATGAAGCTGGAGATGATGTCATTGGACTCACACCCTTaGTTTTCTAGTGCATCGGTTGCTCTTTGCTTCAGA +
Preference number: 3 (lower is better)
Translates to: MKLEMMSLDSHP*FSSASVALCFR
Trigger: TCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGAGTCCAATGACATCATCTCCAGCTTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR GCA 72 bp ATCCTTGTTCCCTTGTTTGAGACAGGGTTTCTTAACTaGAGTGTAGACAGACTATCTGAGCCATGCGTTTCT +
Preference number: 3 (lower is better)
Translates to: ILVPLFETGFLN*SVDRLSEPCVS
Trigger: AGAAACGCATGGCTCAGATAGTCTGTCTACACTGCAGTTAAGAAACCCTGTCTCAAACAAGGGAACAAGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
3UTR GCA 72 bp CAAAATGCTTATATCAAATTACCAAGAAAGGCCTCGTaGCACCTGTTGGGCAAAGAAATGAAGCTGGAGATG +
Preference number: 3 (lower is better)
Translates to: QNAYIKLPRKAS*HLLGKEMKLEM
Trigger: CATCTCCAGCTTCATTTCTTTGCCCAACAGGTGGCACGAGGCCTTTCTTGGTAATTTGATATAAGCATTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR TCA 72 bp CTATTTACATATTCTTCCAACTGTCACCTTACCATGTaGGGTCAAGTACTTTTTGTGATATTAAAACTTGCG +
Preference number: 3 (lower is better)
Translates to: LFTYSSNCHLTM*GQVLFVILKLA
Trigger: CGCAAGTTTTAATATCACAAAAAGTACTTGACCTCACATGGTAAGGTGACAGTTGGAAGAATATGTAAATAG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
3UTR GCA 72 bp TTGTTAGAATTCCCTCAGAAGCTATGTATTAAGCTGTaGTCGCGGTACCTAATACAAAATACACTATATTTT +
Preference number: 3 (lower is better)
Translates to: LLEFPQKLCIKL*SRYLIQNTLYF
Trigger: AAAATATAGTGTATTTTGTATTAGGTACCGCGAGCACAGCTTAATACATAGCTTCTGAGGGAATTCTAACAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp TGGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCGGCGTGGCCGGGGGATaGCTCCCGTCCATGTCTGCG +
Preference number: 4 (lower is better)
Translates to: WASKGAIRLAGPMSHLLRGVAGG*LPSMSA
Trigger: CGCAGACATGGACGGGAGCCATCCCCCGGCCACGCC...GCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCTCTTGGAGCTCCTCTTaGAAGGAGGCCACTCTGGCC +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPSWSSS*KEATLA
Trigger: GGCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGA...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCGGTCGTTGCTTTCGTTaGTGTAGGCGCCACCTTCTA +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPGRCFR*CRRHLL
Trigger: TAGAAGGTGGCGCCTACATCAACGAAAGCAACGACC...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCGTGGAGGCAAAAATCTaGTTAGAGTCTGGGTCCCGG +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPVEAKI*LESGSR
Trigger: CCGGGACCCAGACTCTAATCAGATTTTTGCCTCCAC...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCCTTTCCAAGCATGCGTaGATCAGGGCACTTTTCCCG +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPLSKHA*IRALFP
Trigger: CGGGAAAAGTGCCCTGATGCACGCATGCTTGGAAAG...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCAGGCGAAGCCTGCTCTaGTGTACTGCTTTGATCAAG +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPRRSLL*CTALIK
Trigger: CTTGATCAAAGCAGTACATCAGAGCAGGCTTCGCCT...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCCTACCGACGCTCTGTTaGTCGACATGTTTGGTCTTA +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPLPTLC*STCLVL
Trigger: TAAGACCAAACATGTCGATCAACAGAGCGTCGGTAG...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCTCTGGAGTGATATCTTaGAGCTCCTCTTGCAAGGAG +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPSGVIS*SSSCKE
Trigger: CTCCTTGCAAGAGGAGCTCCAAGATATCACTCCAGA...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCATCTCCACGCTTGTCTaGCTTCCTTCTGGAAACAAG +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPISTLV*LPSGNK
Trigger: CTTGTTTCCAGAAGGAAGCCAGACAAGCGTGGAGAT...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATGGCGTGGCCGGGGGATaGCTCCCGTCCATGTCTGCG +
Preference number: 4 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHGVAGG*LPSMSA
Trigger: CGCAGACATGGACGGGAGCCATCCCCCGGCCACGCC...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCTCTGATGTACTGCTTTaGTCAAGGAATTTCCATCCG +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPSDVLL*SRNFHP
Trigger: CGGATGGAAATTCCTTGATCAAAGCAGTACATCAGA...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp TGGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCAGCATAAACCAGAGCTaGGTAGCCAGAATGGTCCTG +
Preference number: 4 (lower is better)
Translates to: WASKGAIRLAGPMSHLLRSINQS*VARMVL
Trigger: CAGGACCATTCTGGCTACTCAGCTCTGGTTTATGCT...GCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCCCGCGTGATTCCTCCTaGTCAGGGGGCCTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: GNAGITDACTTVTCILGIPRDSS*SGGLEE
Trigger: CTCCTCCAGGCCCCCTGAGCAGGAGGAATCACGCGG...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp TGGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCTACCGACGCTCTGTTaGTCGACATGTTTGGTCTTA +
Preference number: 4 (lower is better)
Translates to: WASKGAIRLAGPMSHLLRLPTLC*STCLVL
Trigger: TAAGACCAAACATGTCGATCAACAGAGCGTCGGTAG...GCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp TATCTGAGCCATGCGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGTCTTGGAGCTCCTCTTaGAAGGAGGCCACTCTGGCC +
Preference number: 4 (lower is better)
Translates to: YLSHAFLGILLAPPIAPQSWSSS*KEATLA
Trigger: GGCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGA...CTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp GGCCTCGTGCCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACCGCGTGATTCCTCCTaGTCAGGGGGCCTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: GLVPPVGQRNEAGDDVIGPRDSS*SGGLEE
Trigger: CTCCTCCAGGCCCCCTGAGCAGGAGGAATCACGCGG...TCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGGCACGAGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCTGTCTGGCTTCCTTCTaGAAACAAGGAATGGTAATT +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPCLASF*KQGMVI
Trigger: AATTACCATTCCTTGTTTCCAGAAGGAAGCCAGACA...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCGATCGGCCCCGCTCTTaGGGAGCAAGGAAACCACCT +
Preference number: 4 (lower is better)
Translates to: GNAGITDACTTVTCILGIDRPRS*GARKPP
Trigger: AGGTGGTTTCCTTGCTCCTCAAGAGCGGGGCCGATC...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp TGGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCGGCTATTTCTTCCTCTaGAGTGATATCTTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: WASKGAIRLAGPMSHLLRGYFFL*SDILEL
Trigger: GAGCTCCAAGATATCACTCCAGAGGAAGAAATAGCC...GCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp TGGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCTCTGATGTACTGCTTTaGTCAAGGAATTTCCATCCG +
Preference number: 4 (lower is better)
Translates to: WASKGAIRLAGPMSHLLRSDVLL*SRNFHP
Trigger: CGGATGGAAATTCCTTGATCAAAGCAGTACATCAGA...GCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCAAGCCGGGTCTGCTCTaGGCCAGACTGTGGTCTAAG +
Preference number: 4 (lower is better)
Translates to: GNAGITDACTTVTCILGIKPGLL*ARLWSK
Trigger: CTTAGACCACAGTCTGGCGCAGAGCAGACCCGGCTT...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCGTTGATCGACATGTTTaGTCTTACAAGCAATCATTA +
Preference number: 4 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPVDRHV*SYKQSL
Trigger: TAATGATTGCTTGTAAGACCAAACATGTCGATCAAC...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp TATCTGAGCCATGCGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGGGCATAAGCGCTTTTTaGCCACAAGAAAGCAGGCCG +
Preference number: 4 (lower is better)
Translates to: YLSHAFLGILLAPPIAPQGISAF*PQESRP
Trigger: CGGCCTGCTTTCTTGTGGCCAAAAAGCGCTTATGCC...CTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp CCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACACCCGATCGGCCCCGCTCTTaGGGAGCAAGGAAACCACCT +
Preference number: 4 (lower is better)
Translates to: PPVGQRNEAGDDVIGLTPDRPRS*GARKPP
Trigger: AGGTGGTTTCCTTGCTCCTCAAGAGCGGGGCCGATC...GGGTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR GCA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATGGCATGTTTAGGTGGTaGTGGGTGGTGTGCCTCCCA +
Preference number: 4 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHGMFRW*WVVCLP
Trigger: TGGGAGGCACACCACCCAGCACCACCTAAACATGCC...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCCTTTCCAAGCATGCGTaGATCAGGGCACTTTTCCCG +
Preference number: 4 (lower is better)
Translates to: GNAGITDACTTVTCILGILSKHA*IRALFP
Trigger: CGGGAAAAGTGCCCTGATGCACGCATGCTTGGAAAG...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp CCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACACCCGGCATGTTTAGGTGGTaGTGGGTGGTGTGCCTCCCA +
Preference number: 4 (lower is better)
Translates to: PPVGQRNEAGDDVIGLTPGMFRW*WVVCLP
Trigger: TGGGAGGCACACCACCCAGCACCACCTAAACATGCC...GGGTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CCA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATTTCCCGGATTTGTCCTaGATGTTGGGGTCAGCGCTG +
Preference number: 4 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHFPDLS*MLGSAL
Trigger: CAGCGCTGACCCCAACATCCAGGACAAATCCGGGAA...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp TATCTGAGCCATGCGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGATCTCCACGCTTGTCTaGCTTCCTTCTGGAAACAAG +
Preference number: 4 (lower is better)
Translates to: YLSHAFLGILLAPPIAPQISTLV*LPSGNK
Trigger: CTTGTTTCCAGAAGGAAGCCAGACAAGCGTGGAGAT...CTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp TATCTGAGCCATGCGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGTTTCTTCCTCTGGAGTaGTATCTTGGAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: YLSHAFLGILLAPPIAPQFLPLE*YLGAPL
Trigger: AAGAGGAGCTCCAAGATATCACTCCAGAGGAAGAAA...CTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCAACCTCTTTGCCCTTTaGCTGGCAAGCACTAAGGAG +
Preference number: 4 (lower is better)
Translates to: GNAGITDACTTVTCILGINLFAL*LASTKE
Trigger: CTCCTTAGTGCTTGCCAGGCAAAGGGCAAAGAGGTT...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCCTCGGAGGAGAGTCTaGGTCCCAGGTATTATCACT +
Preference number: 4 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHPRRRV*VPGIIT
Trigger: AGTGATAATACCTGGGACCCAGACTCTCCTCCGAGG...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCTTTACATCGATGCTCTaGTGCCTGGTGATGAACCGC +
Preference number: 4 (lower is better)
Translates to: GNAGITDACTTVTCILGIFTSML*CLVMNR
Trigger: GCGGTTCATCACCAGGCACCAGAGCATCGATGTAAA...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp TATCTGAGCCATGCGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGGCTCCACTAATTCTTTaGACCCTGAAAGCAAGGAAG +
Preference number: 4 (lower is better)
Translates to: YLSHAFLGILLAPPIAPQAPLIL*TLKARK
Trigger: CTTCCTTGCTTTCAGGGTCCAAAGAATTAGTGGAGC...CTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp TATCTGAGCCATGCGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGCCTGCTCTGATGTACTaGTTTGATCAAGGAATTTCC +
Preference number: 4 (lower is better)
Translates to: YLSHAFLGILLAPPIAPQPALMY*FDQGIS
Trigger: GGAAATTCCTTGATCAAAGCAGTACATCAGAGCAGG...CTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATTTTACATCGATGCTCTaGTGCCTGGTGATGAACCGC +
Preference number: 4 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHFTSML*CLVMNR
Trigger: GCGGTTCATCACCAGGCACCAGAGCATCGATGTAAA...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp GGCCTCGTGCCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACCCAGGTATTATCACTaGCCCCACACAACTCCTTAT +
Preference number: 4 (lower is better)
Translates to: GLVPPVGQRNEAGDDVIGPRYYH*PHTTPY
Trigger: ATAAGGAGTTGTGTGGGGGCAGTGATAATACCTGGG...TCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGGCACGAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CCA 90 bp CCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACACCCTCTTTGCCCTTTGCCTaGCAAGCACTAAGGAGGACT +
Preference number: 4 (lower is better)
Translates to: PPVGQRNEAGDDVIGLTPSLPFA*QALRRT
Trigger: AGTCCTCCTTAGTGCTTGCCAGGCAAAGGGCAAAGA...GGGTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CCA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCGCTCCACTAATTCTTTaGACCCTGAAAGCAAGGAAG +
Preference number: 4 (lower is better)
Translates to: GNAGITDACTTVTCILGIAPLIL*TLKARK
Trigger: CTTCCTTGCTTTCAGGGTCCAAAGAATTAGTGGAGC...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp AGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAAACCTGGTCAAAGGCCCTaGGCAAGTGTGCAGTGTCTT +
Preference number: 4 (lower is better)
Translates to: SSHCEHCLLCRSSFHAFKPGQRP*ASVQCL
Trigger: AAGACACTGCACACTTGCTCAGGGCCTTTGACCAGG...TTTGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCCAGAGTTTCGCTTTTaGACTATACTCTTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHPEFRF*TILFSV
Trigger: CACGCTGAAGAGTATAGTTCAAAAGCGAAACTCTGG...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCAAGCAAGGAAGGAGATaGCGCGAAGATCTTTTTCTT +
Preference number: 4 (lower is better)
Translates to: GNAGITDACTTVTCILGIKQGRR*REDLFL
Trigger: AAGAAAAAGATCTTCGCGCCATCTCCTTCCTTGCTT...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp TTGGACTCACACCCTTGGTTTTCTAGTGCATCGGTTGCTCTTTGCTTCAGAACTACATCGATGCTCTGGTaGCTGGTGATGAACCGCTTA +
Preference number: 4 (lower is better)
Translates to: LDSHPWFSSASVALCFRTTSMLW*LVMNRL
Trigger: TAAGCGGTTCATCACCAGGCACCAGAGCATCGATGT...AGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGAGTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CCA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCTTCCCGGATTTGTCCTaGATGTTGGGGTCAGCGCTG +
Preference number: 4 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSFPDLS*MLGSAL
Trigger: CAGCGCTGACCCCAACATCCAGGACAAATCCGGGAA...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp AGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAAAAGGCGAAGCCTGCTCTaGTGTACTGCTTTGATCAAG +
Preference number: 4 (lower is better)
Translates to: SSHCEHCLLCRSSFHAFKRRSLL*CTALIK
Trigger: CTTGATCAAAGCAGTACATCAGAGCAGGCTTCGCCT...TTTGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp AGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAAAAGCATAAACCAGAGCTaGGTAGCCAGAATGGTCCTG +
Preference number: 4 (lower is better)
Translates to: SSHCEHCLLCRSSFHAFKSINQS*VARMVL
Trigger: CAGGACCATTCTGGCTACTCAGCTCTGGTTTATGCT...TTTGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp TATATCAAATTACCAAGAAAGGCCTCGTGCCACCTGTTGGGCAAAGAAATGAAGGTGGAGGCAAAAATCTaGTTAGAGTCTGGGTCCCGG +
Preference number: 4 (lower is better)
Translates to: YIKLPRKASCHLLGKEMKVEAKI*LESGSR
Trigger: CCGGGACCCAGACTCTAATCAGATTTTTGCCTCCAC...CTTCATTTCTTTGCCCAACAGGTGGCACGAGGCCTTTCTTGGTAATTTGATATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CCA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCCCTCGGAGGAGAGTCTaGGTCCCAGGTATTATCACT +
Preference number: 4 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSPRRRV*VPGIIT
Trigger: AGTGATAATACCTGGGACCCAGACTCTCCTCCGAGG...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATTGTCTGGCTTCCTTCTaGAAACAAGGAATGGTAATT +
Preference number: 4 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHCLASF*KQGMVI
Trigger: AATTACCATTCCTTGTTTCCAGAAGGAAGCCAGACA...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCGGCATAAGCGCTTTTTaGCCACAAGAAAGCAGGCCG +
Preference number: 4 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSGISAF*PQESRP
Trigger: CGGCCTGCTTTCTTGTGGCCAAAAAGCGCTTATGCC...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCACATCGATGCTCTGGTaGCTGGTGATGAACCGCTTA +
Preference number: 4 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSTSMLW*LVMNRL
Trigger: TAAGCGGTTCATCACCAGGCACCAGAGCATCGATGT...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp AGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAAACAGAGCTGTAGTGATTaGCCCCAGAGTTTCGCTTTT +
Preference number: 4 (lower is better)
Translates to: SSHCEHCLLCRSSFHAFKQSCSD*PQSFAF
Trigger: AAAAGCGAAACTCTGGGGCCAATCACTACAGCTCTG...TTTGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp AGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAAATTTCTTCCTCTGGAGTaGTATCTTGGAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: SSHCEHCLLCRSSFHAFKFLPLE*YLGAPL
Trigger: AAGAGGAGCTCCAAGATATCACTCCAGAGGAAGAAA...TTTGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR TCA 90 bp AGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAAACCAGAGTTTCGCTTTTaGACTATACTCTTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: SSHCEHCLLCRSSFHAFKPEFRF*TILFSV
Trigger: CACGCTGAAGAGTATAGTTCAAAAGCGAAACTCTGG...TTTGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCCCCAGGTATTATCACTaGCCCCACACAACTCCTTAT +
Preference number: 4 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSPRYYH*PHTTPY
Trigger: ATAAGGAGTTGTGTGGGGGCAGTGATAATACCTGGG...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp TTAGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAGGCTATTTCTTCCTCTaGAGTGATATCTTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: LAATVNTACSVDLVFMLSGYFFL*SDILEL
Trigger: GAGCTCCAAGATATCACTCCAGAGGAAGAAATAGCC...TGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCCAGAGCTGTAGTGATTaGCCCCAGAGTTTCGCTTTT +
Preference number: 4 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSQSCSD*PQSFAF
Trigger: AAAAGCGAAACTCTGGGGCCAATCACTACAGCTCTG...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp AGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAAACCTGCTCTGATGTACTaGTTTGATCAAGGAATTTCC +
Preference number: 4 (lower is better)
Translates to: SSHCEHCLLCRSSFHAFKPALMY*FDQGIS
Trigger: GGAAATTCCTTGATCAAAGCAGTACATCAGAGCAGG...TTTGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp TTAGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAAAGCAAGGAAGGAGATaGCGCGAAGATCTTTTTCTT +
Preference number: 4 (lower is better)
Translates to: LAATVNTACSVDLVFMLSKQGRR*REDLFL
Trigger: AAGAAAAAGATCTTCGCGCCATCTCCTTCCTTGCTT...TGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp TTAGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAGAAGATCTTTTTCTTTaGAGCTTTGCCATCTTCTAC +
Preference number: 4 (lower is better)
Translates to: LAATVNTACSVDLVFMLSEDLFL*SFAIFY
Trigger: GTAGAAGATGGCAAAGCTGCAAAGAAAAAGATCTTC...TGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR GCA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCGAAGATCTTTTTCTTTaGAGCTTTGCCATCTTCTAC +
Preference number: 4 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSEDLFL*SFAIFY
Trigger: GTAGAAGATGGCAAAGCTGCAAAGAAAAAGATCTTC...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CCA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCGTTGATCGACATGTTTaGTCTTACAAGCAATCATTA +
Preference number: 4 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSVDRHV*SYKQSL
Trigger: TAATGATTGCTTGTAAGACCAAACATGTCGATCAAC...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 90 bp GCCGGGGGATGGCTCCCGTCCATGTCTGCGGGAGGCATGTTTAGGTaGTGCTGGGTGGTGTGCCTCCCAGAGGGCGACTTCGCTGTGGTT +
Preference number: 5 (lower is better)
Translates to: AGGWLPSMSAGGMFR*CWVVCLPEGDFAVV
Trigger: AACCACAGCGAAGTCGCCCTCTGGGAGGCACACCACCCAGCACCACCTAAACATGCCTCCCGCAGACATGGACGGGAGCCATCCCCCGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCCGGCATAAGCGCTTTTaGGCCACAAGAAAGCAGGCC +
Preference number: 5 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPRHKRF*ATRKQA
Trigger: GGCCTGCTTTCTTGTGGCCAAAAAGCGCTTATGCCG...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 90 bp GGAAAGCCCCGGAACCACGCCTTTCCAACACCGCGTGATTCCTCCTaGTCAGGGGGCCTGGAGGAGCAGGCTCCACTAATTCTTTGGACC +
Preference number: 5 (lower is better)
Translates to: GKPRNHAFPTPRDSS*SGGLEEQAPLILWT
Trigger: GGTCCAAAGAATTAGTGGAGCCTGCTCCTCCAGGCCCCCTGAGCAGGAGGAATCACGCGGTGTTGGAAAGGCGTGGTTCCGGGGCTTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 90 bp TGGGAGGGTGAGGATTCACATTCAAGGGCGGCAGAAAGCCGGGTCTaGTCTGCGCCAGACTGTGGTCTAAGGGGAAAGCCCCGGAACCAC +
Preference number: 5 (lower is better)
Translates to: WEGEDSHSRAAESRV*SAPDCGLRGKPRNH
Trigger: GTGGTTCCGGGGCTTTCCCCTTAGACCACAGTCTGGCGCAGAGCAGACCCGGCTTTCTGCCGCCCTTGAATGTGAATCCTCACCCTCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCTCTACCGACGCTCTGTaGATCGACATGTTTGGTCTT +
Preference number: 5 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPSTDAL*IDMFGL
Trigger: AAGACCAAACATGTCGATCAACAGAGCGTCGGTAGA...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp CAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCCCCGCCCGGCTCCACTAATTCTTaGGACCCTGAAAGCAAGGAA +
Preference number: 5 (lower is better)
Translates to: QRGHSACRAHEPSPPPPPGSTNS*DPESKE
Trigger: TTCCTTGCTTTCAGGGTCCAAAGAATTAGTGGAGCC...GGGCGGGGGCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 90 bp AACGAGGCTGTTTTGATGTCAATTTCCGAAGGCGTGGCCGGGGGATaGCTCCCGTCCATGTCTGCGGGAGGCATGTTTAGGTGGTGCTGG +
Preference number: 5 (lower is better)
Translates to: NEAVLMSISEGVAGG*LPSMSAGGMFRWCW
Trigger: CCAGCACCACCTAAACATGCCTCCCGCAGACATGGACGGGAGCCATCCCCCGGCCACGCCTTCGGAAATTGACATCAAAACAGCCTCGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TGGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCAGCAGGCCGCAGATCTaGTTGTTGACACCAATGTCT +
Preference number: 5 (lower is better)
Translates to: WASKGAIRLAGPMSHLLRSRPQI*LLTPMS
Trigger: AGACATTGGTGTCAACAACAAGATCTGCGGCCTGCT...GCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TATCTGAGCCATGCGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGATCTTGGAGCTCCTCTaGCAAGGAGGCCACTCTGGC +
Preference number: 5 (lower is better)
Translates to: YLSHAFLGILLAPPIAPQILELL*QGGHSG
Trigger: GCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGAT...CTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 90 bp AGGAGCAAGGAAACCACCTCTGGGCCGGCTCTTTCCAAGCATGCGTaGATCAGGGCACTTTTCCCGGATTTGTCCTGGATGTTGGGGTCA +
Preference number: 5 (lower is better)
Translates to: RSKETTSGPALSKHA*IRALFPDLSWMLGS
Trigger: TGACCCCAACATCCAGGACAAATCCGGGAAAAGTGCCCTGATGCACGCATGCTTGGAAAGAGCCGGCCCAGAGGTGGTTTCCTTGCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 90 bp CTTGAGGAGCAAGGAAACCACCTCTGGGCCGGCTCTTTCCAAGCATaGGTGCATCAGGGCACTTTTCCCGGATTTGTCCTGGATGTTGGG +
Preference number: 5 (lower is better)
Translates to: LEEQGNHLWAGSFQA*VHQGTFPGFVLDVG
Trigger: CCCAACATCCAGGACAAATCCGGGAAAAGTGCCCTGATGCACGCATGCTTGGAAAGAGCCGGCCCAGAGGTGGTTTCCTTGCTCCTCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TGGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCATAATGATAACCTCTTaGCCCTTTGCCTGGCAAGCA +
Preference number: 5 (lower is better)
Translates to: WASKGAIRLAGPMSHLLRIMITS*PFAWQA
Trigger: TGCTTGCCAGGCAAAGGGCAAAGAGGTTATCATTAT...GCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 90 bp TCAGGTCCGTCTCAGAAGAATAGGAAAGTGGCAACGAGGCTGTTTTaGTGTCAATTTCCGAAGGCGTGGCCGGGGGATGGCTCCCGTCCA +
Preference number: 5 (lower is better)
Translates to: SGPSQKNRKVATRLF*CQFPKAWPGDGSRP
Trigger: TGGACGGGAGCCATCCCCCGGCCACGCCTTCGGAAATTGACATCAAAACAGCCTCGTTGCCACTTTCCTATTCTTCTGAGACGGACCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 90 bp GCCTGGTGCTTTAATGATGGGGTACTCTTGATCCAGGCTGGAGCCTaGGATAGCTTGGGCCCATTAGTGGCTATCACAGGCTTCCTCGGA +
Preference number: 5 (lower is better)
Translates to: AWCFNDGVLLIQAGA*DSLGPLVAITGFLG
Trigger: TCCGAGGAAGCCTGTGATAGCCACTAATGGGCCCAAGCTATCCCAGGCTCCAGCCTGGATCAAGAGTACCCCATCATTAAAGCACCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 90 bp GGAGTGATATCTTGGAGCTCCTCTTGCAAGGAGGCCACTCTGGCCTaGTGCTTTAATGATGGGGTACTCTTGATCCAGGCTGGAGCCTGG +
Preference number: 5 (lower is better)
Translates to: GVISWSSSCKEATLA*CFNDGVLLIQAGAW
Trigger: CCAGGCTCCAGCCTGGATCAAGAGTACCCCATCATTAAAGCACCAGGCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGATATCACTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATAGATCGGCCCCGCTCTaGAGGAGCAAGGAAACCACC +
Preference number: 5 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHRSAPL*RSKETT
Trigger: GGTGGTTTCCTTGCTCCTCAAGAGCGGGGCCGATCT...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 90 bp AGGCCGCAGATCTTGTTGTTGACACCAATGTCTGTAATGGGAGGGTaGGGATTCACATTCAAGGGCGGCAGAAAGCCGGGTCTGCTCTGC +
Preference number: 5 (lower is better)
Translates to: RPQILLLTPMSVMGG*GFTFKGGRKPGLLC
Trigger: GCAGAGCAGACCCGGCTTTCTGCCGCCCTTGAATGTGAATCCTCACCCTCCCATTACAGACATTGGTGTCAACAACAAGATCTGCGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 90 bp GTGATATCTTGGAGCTCCTCTTGCAAGGAGGCCACTCTGGCCTGGTaGTTTAATGATGGGGTACTCTTGATCCAGGCTGGAGCCTGGGAT +
Preference number: 5 (lower is better)
Translates to: VISWSSSCKEATLAW*FNDGVLLIQAGAWD
Trigger: ATCCCAGGCTCCAGCCTGGATCAAGAGTACCCCATCATTAAAGCACCAGGCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGATATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 90 bp CTTGGGCCCATTAGTGGCTATCACAGGCTTCCTCGGAGGAGAGTCTaGGTCCCAGGTATTATCACTGCCCCCACACAACTCCTTATCCTT +
Preference number: 5 (lower is better)
Translates to: LGPISGYHRLPRRRV*VPGIITAPTQLLIL
Trigger: AAGGATAAGGAGTTGTGTGGGGGCAGTGATAATACCTGGGACCCAGACTCTCCTCCGAGGAAGCCTGTGATAGCCACTAATGGGCCCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATATCTTGGAGCTCCTCTaGCAAGGAGGCCACTCTGGC +
Preference number: 5 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHILELL*QGGHSG
Trigger: GCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGAT...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TGGGCATCCAAAGGGGCCATTCGGCTTGCAGGGCCCATGAGCCATCTCCTCCGCCGAAGATCTTTTTCTTaGCAGCTTTGCCATCTTCTA +
Preference number: 5 (lower is better)
Translates to: WASKGAIRLAGPMSHLLRRRSFS*QLCHLL
Trigger: TAGAAGATGGCAAAGCTGCAAAGAAAAAGATCTTCG...GCGGAGGAGATGGCTCATGGGCCCTGCAAGCCGAATGGCCCCTTTGGATGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 90 bp AGAGTGCCAGCGCGTTGGTTTTGTAGGCTATTTCTTCCTCTGGAGTaGTATCTTGGAGCTCCTCTTGCAAGGAGGCCACTCTGGCCTGGT +
Preference number: 5 (lower is better)
Translates to: RVPARWFCRLFLPLE*YLGAPLARRPLWPG
Trigger: ACCAGGCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGATATCACTCCAGAGGAAGAAATAGCCTACAAAACCAACGCGCTGGCACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 90 bp TGGCGCGAAGATCTTTTTCTTTGCAGCTTTGCCATCTTCTACGGTTaGAGGGGTGACACCCTCAGCGAGCTGCGAATCAGAGCTGTAGTG +
Preference number: 5 (lower is better)
Translates to: WREDLFLCSFAIFYG*RGDTLSELRIRAVV
Trigger: CACTACAGCTCTGATTCGCAGCTCGCTGAGGGTGTCACCCCTCCAACCGTAGAAGATGGCAAAGCTGCAAAGAAAAAGATCTTCGCGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 90 bp AGATCTTTTTCTTTGCAGCTTTGCCATCTTCTACGGTTGGAGGGGTaGCACCCTCAGCGAGCTGCGAATCAGAGCTGTAGTGATTGGCCC +
Preference number: 5 (lower is better)
Translates to: RSFSLQLCHLLRLEG*HPQRAANQSCSDWP
Trigger: GGGCCAATCACTACAGCTCTGATTCGCAGCTCGCTGAGGGTGTCACCCCTCCAACCGTAGAAGATGGCAAAGCTGCAAAGAAAAAGATCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 90 bp CTTAGAGAGTGCCAGCGCGTTGGTTTTGTAGGCTATTTCTTCCTCTaGAGTGATATCTTGGAGCTCCTCTTGCAAGGAGGCCACTCTGGC +
Preference number: 5 (lower is better)
Translates to: LRECQRVGFVGYFFL*SDILELLLQGGHSG
Trigger: GCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGATATCACTCCAGAGGAAGAAATAGCCTACAAAACCAACGCGCTGGCACTCTCTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TATCTGAGCCATGCGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGATAATGATAACCTCTTaGCCCTTTGCCTGGCAAGCA +
Preference number: 5 (lower is better)
Translates to: YLSHAFLGILLAPPIAPQIMITS*PFAWQA
Trigger: TGCTTGCCAGGCAAAGGGCAAAGAGGTTATCATTAT...CTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCGGCAACGAGGCTGTTTaGATGTCAATTTCCGAAGGC +
Preference number: 5 (lower is better)
Translates to: GNAGITDACTTVTCILGIGNEAV*MSISEG
Trigger: GCCTTCGGAAATTGACATCAAAACAGCCTCGTTGCC...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATTGGGAATCTCCACGCTaGTCTGGCTTCCTTCTGGAA +
Preference number: 5 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHWESPR*SGFLLE
Trigger: TTCCAGAAGGAAGCCAGACAAGCGTGGAGATTCCCA...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TATCTGAGCCATGCGTTTCTAGGGATTCTCCTGGCTCCACCCATCGCCCCACAGCCCAGAGTTTCGCTTTaGAACTATACTCTTCAGCGT +
Preference number: 5 (lower is better)
Translates to: YLSHAFLGILLAPPIAPQPRVSL*NYTLQR
Trigger: ACGCTGAAGAGTATAGTTCAAAAGCGAAACTCTGGG...CTGTGGGGCGATGGGTGGAGCCAGGAGAATCCCTAGAAACGCATGGCTCAGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCAGCAGGCCGCAGATCTaGTTGTTGACACCAATGTCT +
Preference number: 5 (lower is better)
Translates to: GNAGITDACTTVTCILGISRPQI*LLTPMS
Trigger: AGACATTGGTGTCAACAACAAGATCTGCGGCCTGCT...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 90 bp CTTGAAGCCAAAGAGTGTCAGGTCCGTCTCAGAAGAATAGGAAAGTaGCAACGAGGCTGTTTTGATGTCAATTTCCGAAGGCGTGGCCGG +
Preference number: 5 (lower is better)
Translates to: LEAKECQVRLRRIGK*QRGCFDVNFRRRGR
Trigger: CCGGCCACGCCTTCGGAAATTGACATCAAAACAGCCTCGTTGCCACTTTCCTATTCTTCTGAGACGGACCTGACACTCTTTGGCTTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 90 bp CTGGGTCCCAGGTATTATCACTGCCCCCACACAACTCCTTATCCTTaGAGCCAAAGAGTGTCAGGTCCGTCTCAGAAGAATAGGAAAGTG +
Preference number: 5 (lower is better)
Translates to: LGPRYYHCPHTTPYP*SQRVSGPSQKNRKV
Trigger: CACTTTCCTATTCTTCTGAGACGGACCTGACACTCTTTGGCTTCAAGGATAAGGAGTTGTGTGGGGGCAGTGATAATACCTGGGACCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 90 bp TTGAACTATACTCTTCAGCGTGGAGGCAAAAATCTGATTAGAGTCTaGGTCCCGGTCAGTGGGAATCTCCACGCTTGTCTGGCTTCCTTC +
Preference number: 5 (lower is better)
Translates to: LNYTLQRGGKNLIRV*VPVSGNLHACLASF
Trigger: GAAGGAAGCCAGACAAGCGTGGAGATTCCCACTGACCGGGACCCAGACTCTAATCAGATTTTTGCCTCCACGCTGAAGAGTATAGTTCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp CCACCTGTTGGGCAAAGAAATGAAGCTGGAGATGATGTCATTGGACTCACACCCGGCAACGAGGCTGTTTaGATGTCAATTTCCGAAGGC +
Preference number: 5 (lower is better)
Translates to: PPVGQRNEAGDDVIGLTPGNEAV*MSISEG
Trigger: GCCTTCGGAAATTGACATCAAAACAGCCTCGTTGCC...GGGTGTGAGTCCAATGACATCATCTCCAGCTTCATTTCTTTGCCCAACAGGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CAA 90 bp AGGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATGGCTCCACTAATTCTTaGGACCCTGAAAGCAAGGAA +
Preference number: 5 (lower is better)
Translates to: RECWDYRCLHYCHVHSGHGSTNS*DPESKE
Trigger: TTCCTTGCTTTCAGGGTCCAAAGAATTAGTGGAGCC...ATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TTGGACTCACACCCTTGGTTTTCTAGTGCATCGGTTGCTCTTTGCTTCAGAACTCGGCATAAGCGCTTTTaGGCCACAAGAAAGCAGGCC +
Preference number: 5 (lower is better)
Translates to: LDSHPWFSSASVALCFRTRHKRF*ATRKQA
Trigger: GGCCTGCTTTCTTGTGGCCAAAAAGCGCTTATGCCG...AGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGAGTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS GCA 90 bp AGAGGGCGACTTCGCTGTGGTTATAATGATAACCTCTTTGCCCTTTaGCTGGCAAGCACTAAGGAGGACTTTCAGGGTATCTCTGTCTTC +
Preference number: 5 (lower is better)
Translates to: RGRLRCGYNDNLFAL*LASTKEDFQGISVF
Trigger: GAAGACAGAGATACCCTGAAAGTCCTCCTTAGTGCTTGCCAGGCAAAGGGCAAAGAGGTTATCATTATAACCACAGCGAAGTCGCCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 90 bp TTTTACATCGATGCTCTGGTGCCTGGTGATGAACCGCTTAGAGAGTaGCAGCGCGTTGGTTTTGTAGGCTATTTCTTCCTCTGGAGTGAT +
Preference number: 5 (lower is better)
Translates to: FYIDALVPGDEPLRE*QRVGFVGYFFLWSD
Trigger: ATCACTCCAGAGGAAGAAATAGCCTACAAAACCAACGCGCTGGCACTCTCTAAGCGGTTCATCACCAGGCACCAGAGCATCGATGTAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TTGGACTCACACCCTTGGTTTTCTAGTGCATCGGTTGCTCTTTGCTTCAGAACTGATTTGTCCTGGATGTaGGGGTCAGCGCTGTTCTCT +
Preference number: 5 (lower is better)
Translates to: LDSHPWFSSASVALCFRTDLSWM*GSALFS
Trigger: AGAGAACAGCGCTGACCCCAACATCCAGGACAAATC...AGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGAGTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CAA 90 bp GGGAATGCTGGGATTACAGATGCCTGCACTACTGTCACGTGCATTCTGGGCATCTTTTTCTTTGCAGCTTaGCCATCTTCTACGGTTGGA +
Preference number: 5 (lower is better)
Translates to: GNAGITDACTTVTCILGIFFFAA*PSSTVG
Trigger: TCCAACCGTAGAAGATGGCAAAGCTGCAAAGAAAAA...GATGCCCAGAATGCACGTGACAGTAGTGCAGGCATCTGTAATCCCAGCATTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TTAGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCAGATTTGTCCTGGATGTaGGGGTCAGCGCTGTTCTCT +
Preference number: 5 (lower is better)
Translates to: LAATVNTACSVDLVFMLSDLSWM*GSALFS
Trigger: AGAGAACAGCGCTGACCCCAACATCCAGGACAAATC...TGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp AAGCAAGCGTTTAATTCCCTCTTTTTGTTATTCCCAAACTTCTTGCTCCCCAGCTGGGAATCTCCACGCTaGTCTGGCTTCCTTCTGGAA +
Preference number: 5 (lower is better)
Translates to: KQAFNSLFLLFPNFLLPSWESPR*SGFLLE
Trigger: TTCCAGAAGGAAGCCAGACAAGCGTGGAGATTCCCA...GCTGGGGAGCAAGAAGTTTGGGAATAACAAAAAGAGGGAATTAAACGCTTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TTAGCAGCCACTGTGAACACTGCTTGCTCTGTCGATCTAGTTTTCATGCTTTCATCTACCGACGCTCTGTaGATCGACATGTTTGGTCTT +
Preference number: 5 (lower is better)
Translates to: LAATVNTACSVDLVFMLSSTDAL*IDMFGL
Trigger: AAGACCAAACATGTCGATCAACAGAGCGTCGGTAGA...TGAAAGCATGAAAACTAGATCGACAGAGCAAGCAGTGTTCACAGTGGCTGCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS-3UTR CAA 90 bp TTGGACTCACACCCTTGGTTTTCTAGTGCATCGGTTGCTCTTTGCTTCAGAACTCCCAGAGTTTCGCTTTaGAACTATACTCTTCAGCGT +
Preference number: 5 (lower is better)
Translates to: LDSHPWFSSASVALCFRTPRVSL*NYTLQR
Trigger: ACGCTGAAGAGTATAGTTCAAAAGCGAAACTCTGGG...AGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGAGTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CAA 90 bp TTGGACTCACACCCTTGGTTTTCTAGTGCATCGGTTGCTCTTTGCTTCAGAACTCGAAGATCTTTTTCTTaGCAGCTTTGCCATCTTCTA +
Preference number: 5 (lower is better)
Translates to: LDSHPWFSSASVALCFRTRRSFS*QLCHLL
Trigger: TAGAAGATGGCAAAGCTGCAAAGAAAAAGATCTTCG...AGTTCTGAAGCAAAGAGCAACCGATGCACTAGAAAACCAAGGGTGTGAGTCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS-3UTR CAA 90 bp TATATCAAATTACCAAGAAAGGCCTCGTGCCACCTGTTGGGCAAAGAAATGAAGTTTTTCTTTGCAGCTTaGCCATCTTCTACGGTTGGA +
Preference number: 5 (lower is better)
Translates to: YIKLPRKASCHLLGKEMKFFFAA*PSSTVG
Trigger: TCCAACCGTAGAAGATGGCAAAGCTGCAAAGAAAAA...CTTCATTTCTTTGCCCAACAGGTGGCACGAGGCCTTTCTTGGTAATTTGATATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061594.13
CDS GCA 72 bp CTCCCGTCCATGTCTGCGGGAGGCATGTTTAGGTGGTaGTGGGTGGTGTGCCTCCCAGAGGGCGACTTCGCT +
Preference number: 6 (lower is better)
Translates to: LPSMSAGGMFRW*WVVCLPEGDFA
Trigger: AGCGAAGTCGCCCTCTGGGAGGCACACCACCCAGCACCACCTAAACATGCCTCCCGCAGACATGGACGGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 72 bp CGGAACCACGCCTTTCCAACACCGCGTGATTCCTCCTaGTCAGGGGGCCTGGAGGAGCAGGCTCCACTAATT +
Preference number: 6 (lower is better)
Translates to: RNHAFPTPRDSS*SGGLEEQAPLI
Trigger: AATTAGTGGAGCCTGCTCCTCCAGGCCCCCTGAGCAGGAGGAATCACGCGGTGTTGGAAAGGCGTGGTTCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 72 bp TTCACATTCAAGGGCGGCAGAAAGCCGGGTCTGCTCTaGGCCAGACTGTGGTCTAAGGGGAAAGCCCCGGAA +
Preference number: 6 (lower is better)
Translates to: FTFKGGRKPGLL*ARLWSKGKAPE
Trigger: TTCCGGGGCTTTCCCCTTAGACCACAGTCTGGCGCAGAGCAGACCCGGCTTTCTGCCGCCCTTGAATGTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 72 bp GTTTTGATGTCAATTTCCGAAGGCGTGGCCGGGGGATaGCTCCCGTCCATGTCTGCGGGAGGCATGTTTAGG +
Preference number: 6 (lower is better)
Translates to: VLMSISEGVAGG*LPSMSAGGMFR
Trigger: CCTAAACATGCCTCCCGCAGACATGGACGGGAGCCATCCCCCGGCCACGCCTTCGGAAATTGACATCAAAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 72 bp GAAACCACCTCTGGGCCGGCTCTTTCCAAGCATGCGTaGATCAGGGCACTTTTCCCGGATTTGTCCTGGATG +
Preference number: 6 (lower is better)
Translates to: ETTSGPALSKHA*IRALFPDLSWM
Trigger: CATCCAGGACAAATCCGGGAAAAGTGCCCTGATGCACGCATGCTTGGAAAGAGCCGGCCCAGAGGTGGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 72 bp CAAGGAAACCACCTCTGGGCCGGCTCTTTCCAAGCATaGGTGCATCAGGGCACTTTTCCCGGATTTGTCCTG +
Preference number: 6 (lower is better)
Translates to: QGNHLWAGSFQA*VHQGTFPGFVL
Trigger: CAGGACAAATCCGGGAAAAGTGCCCTGATGCACGCATGCTTGGAAAGAGCCGGCCCAGAGGTGGTTTCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 72 bp TGGAGCTCCTCTTGCAAGGAGGCCACTCTGGCCTGGTaGTTTAATGATGGGGTACTCTTGATCCAGGCTGGA +
Preference number: 6 (lower is better)
Translates to: WSSSCKEATLAW*FNDGVLLIQAG
Trigger: TCCAGCCTGGATCAAGAGTACCCCATCATTAAAGCACCAGGCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CAA 90 bp TTCCTCCTGCTCAGGGGGCCTGGAGGAGCAGGCTCCACTAATTCTTaGGACCCTGAAAGCAAGGAAGGAGATGGCGCGAAGATCTTTTTC +
Preference number: 6 (lower is better)
Translates to: FLLLRGPGGAGSTNS*DPESKEGDGAKIFF
Trigger: GAAAAAGATCTTCGCGCCATCTCCTTCCTTGCTTTCAGGGTCCAAAGAATTAGTGGAGCCTGCTCCTCCAGGCCCCCTGAGCAGGAGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 72 bp TCTTTGCAGCTTTGCCATCTTCTACGGTTGGAGGGGTaGCACCCTCAGCGAGCTGCGAATCAGAGCTGTAGT +
Preference number: 6 (lower is better)
Translates to: SLQLCHLLRLEG*HPQRAANQSCS
Trigger: ACTACAGCTCTGATTCGCAGCTCGCTGAGGGTGTCACCCCTCCAACCGTAGAAGATGGCAAAGCTGCAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 72 bp AGCAAGTGTGCAGTGTCTTTTACATCGATGCTCTGGTaGCTGGTGATGAACCGCTTAGAGAGTGCCAGCGCG +
Preference number: 6 (lower is better)
Translates to: SKCAVSFTSMLW*LVMNRLESASA
Trigger: CGCGCTGGCACTCTCTAAGCGGTTCATCACCAGGCACCAGAGCATCGATGTAAAAGACACTGCACACTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 72 bp ATTAGTGGCTATCACAGGCTTCCTCGGAGGAGAGTCTaGGTCCCAGGTATTATCACTGCCCCCACACAACTC +
Preference number: 6 (lower is better)
Translates to: ISGYHRLPRRRV*VPGIITAPTQL
Trigger: GAGTTGTGTGGGGGCAGTGATAATACCTGGGACCCAGACTCTCCTCCGAGGAAGCCTGTGATAGCCACTAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 72 bp TCTTGGAGCTCCTCTTGCAAGGAGGCCACTCTGGCCTaGTGCTTTAATGATGGGGTACTCTTGATCCAGGCT +
Preference number: 6 (lower is better)
Translates to: SWSSSCKEATLA*CFNDGVLLIQA
Trigger: AGCCTGGATCAAGAGTACCCCATCATTAAAGCACCAGGCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 72 bp TCTCAGAAGAATAGGAAAGTGGCAACGAGGCTGTTTTaGTGTCAATTTCCGAAGGCGTGGCCGGGGGATGGC +
Preference number: 6 (lower is better)
Translates to: SQKNRKVATRLF*CQFPKAWPGDG
Trigger: GCCATCCCCCGGCCACGCCTTCGGAAATTGACATCAAAACAGCCTCGTTGCCACTTTCCTATTCTTCTGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 72 bp GATGCTCTGGTGCCTGGTGATGAACCGCTTAGAGAGTaGCAGCGCGTTGGTTTTGTAGGCTATTTCTTCCTC +
Preference number: 6 (lower is better)
Translates to: DALVPGDEPLRE*QRVGFVGYFFL
Trigger: GAGGAAGAAATAGCCTACAAAACCAACGCGCTGGCACTCTCTAAGCGGTTCATCACCAGGCACCAGAGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 72 bp CATGCGTGCATCAGGGCACTTTTCCCGGATTTGTCCTaGATGTTGGGGTCAGCGCTGTTCTCTAAGAGGTAT +
Preference number: 6 (lower is better)
Translates to: HACIRALFPDLS*MLGSALFSKRY
Trigger: ATACCTCTTAGAGAACAGCGCTGACCCCAACATCCAGGACAAATCCGGGAAAAGTGCCCTGATGCACGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 72 bp CTGAGCAAGTGTGCAGTGTCTTTTACATCGATGCTCTaGTGCCTGGTGATGAACCGCTTAGAGAGTGCCAGC +
Preference number: 6 (lower is better)
Translates to: LSKCAVSFTSML*CLVMNRLESAS
Trigger: GCTGGCACTCTCTAAGCGGTTCATCACCAGGCACCAGAGCATCGATGTAAAAGACACTGCACACTTGCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 72 bp GCGCGTTGGTTTTGTAGGCTATTTCTTCCTCTGGAGTaGTATCTTGGAGCTCCTCTTGCAAGGAGGCCACTC +
Preference number: 6 (lower is better)
Translates to: ARWFCRLFLPLE*YLGAPLARRPL
Trigger: GAGTGGCCTCCTTGCAAGAGGAGCTCCAAGATATCACTCCAGAGGAAGAAATAGCCTACAAAACCAACGCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 72 bp TGCCAGCGCGTTGGTTTTGTAGGCTATTTCTTCCTCTaGAGTGATATCTTGGAGCTCCTCTTGCAAGGAGGC +
Preference number: 6 (lower is better)
Translates to: CQRVGFVGYFFL*SDILELLLQGG
Trigger: GCCTCCTTGCAAGAGGAGCTCCAAGATATCACTCCAGAGGAAGAAATAGCCTACAAAACCAACGCGCTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 72 bp GATCTTTTTCTTTGCAGCTTTGCCATCTTCTACGGTTaGAGGGGTGACACCCTCAGCGAGCTGCGAATCAGA +
Preference number: 6 (lower is better)
Translates to: DLFLCSFAIFYG*RGDTLSELRIR
Trigger: TCTGATTCGCAGCTCGCTGAGGGTGTCACCCCTCCAACCGTAGAAGATGGCAAAGCTGCAAAGAAAAAGATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CAA 90 bp AAGCATGCGTGCATCAGGGCACTTTTCCCGGATTTGTCCTGGATGTaGGGGTCAGCGCTGTTCTCTAAGAGGTATTTAACCATCTTGGCT +
Preference number: 6 (lower is better)
Translates to: KHACIRALFPDLSWM*GSALFSKRYLTILA
Trigger: AGCCAAGATGGTTAAATACCTCTTAGAGAACAGCGCTGACCCCAACATCCAGGACAAATCCGGGAAAAGTGCCCTGATGCACGCATGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 72 bp ATCTTGTTGTTGACACCAATGTCTGTAATGGGAGGGTaGGGATTCACATTCAAGGGCGGCAGAAAGCCGGGT +
Preference number: 6 (lower is better)
Translates to: ILLLTPMSVMGG*GFTFKGGRKPG
Trigger: ACCCGGCTTTCTGCCGCCCTTGAATGTGAATCCTCACCCTCCCATTACAGACATTGGTGTCAACAACAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 72 bp CACCCTCAGCGAGCTGCGAATCAGAGCTGTAGTGATTaGCCCCAGAGTTTCGCTTTTGAACTATACTCTTCA +
Preference number: 6 (lower is better)
Translates to: HPQRAANQSCSD*PQSFAFELYSS
Trigger: TGAAGAGTATAGTTCAAAAGCGAAACTCTGGGGCCAATCACTACAGCTCTGATTCGCAGCTCGCTGAGGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CAA 72 bp TGCATCAGGGCACTTTTCCCGGATTTGTCCTGGATGTaGGGGTCAGCGCTGTTCTCTAAGAGGTATTTAACC +
Preference number: 6 (lower is better)
Translates to: CIRALFPDLSWM*GSALFSKRYLT
Trigger: GGTTAAATACCTCTTAGAGAACAGCGCTGACCCCAACATCCAGGACAAATCCGGGAAAAGTGCCCTGATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 72 bp ATTTCTTCCTCTGGAGTGATATCTTGGAGCTCCTCTTaGAAGGAGGCCACTCTGGCCTGGTGCTTTAATGAT +
Preference number: 6 (lower is better)
Translates to: ISSSGVISWSSS*KEATLAWCFND
Trigger: ATCATTAAAGCACCAGGCCAGAGTGGCCTCCTTGCAAGAGGAGCTCCAAGATATCACTCCAGAGGAAGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CAA 72 bp CAGGTATTATCACTGCCCCCACACAACTCCTTATCCTaGAAGCCAAAGAGTGTCAGGTCCGTCTCAGAAGAA +
Preference number: 6 (lower is better)
Translates to: QVLSLPPHNSLS*KPKSVRSVSEE
Trigger: TTCTTCTGAGACGGACCTGACACTCTTTGGCTTCAAGGATAAGGAGTTGTGTGGGGGCAGTGATAATACCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CAA 90 bp GAGCTGCGAATCAGAGCTGTAGTGATTGGCCCCAGAGTTTCGCTTTaGAACTATACTCTTCAGCGTGGAGGCAAAAATCTGATTAGAGTC +
Preference number: 6 (lower is better)
Translates to: ELRIRAVVIGPRVSL*NYTLQRGGKNLIRV
Trigger: GACTCTAATCAGATTTTTGCCTCCACGCTGAAGAGTATAGTTCAAAAGCGAAACTCTGGGGCCAATCACTACAGCTCTGATTCGCAGCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 72 bp AGGTATTATCACTGCCCCCACACAACTCCTTATCCTTaGAGCCAAAGAGTGTCAGGTCCGTCTCAGAAGAAT +
Preference number: 6 (lower is better)
Translates to: RYYHCPHTTPYP*SQRVSGPSQKN
Trigger: ATTCTTCTGAGACGGACCTGACACTCTTTGGCTTCAAGGATAAGGAGTTGTGTGGGGGCAGTGATAATACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS GCA 72 bp CTTCGCTGTGGTTATAATGATAACCTCTTTGCCCTTTaGCTGGCAAGCACTAAGGAGGACTTTCAGGGTATC +
Preference number: 6 (lower is better)
Translates to: LRCGYNDNLFAL*LASTKEDFQGI
Trigger: GATACCCTGAAAGTCCTCCTTAGTGCTTGCCAGGCAAAGGGCAAAGAGGTTATCATTATAACCACAGCGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS TCA 72 bp CCTTCTAGCAAAAGTCTAGTGAGGCGAAGCCTGCTCTaGTGTACTGCTTTGATCAAGGAATTTCCATCCGTT +
Preference number: 6 (lower is better)
Translates to: PSSKSLVRRSLL*CTALIKEFPSV
Trigger: AACGGATGGAAATTCCTTGATCAAAGCAGTACATCAGAGCAGGCTTCGCCTCACTAGACTTTTGCTAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CCA 72 bp AAAGAGTGTCAGGTCCGTCTCAGAAGAATAGGAAAGTaGCAACGAGGCTGTTTTGATGTCAATTTCCGAAGG +
Preference number: 6 (lower is better)
Translates to: KECQVRLRRIGK*QRGCFDVNFRR
Trigger: CCTTCGGAAATTGACATCAAAACAGCCTCGTTGCCACTTTCCTATTCTTCTGAGACGGACCTGACACTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2
CDS CAA 72 bp ATCAGAGCTGTAGTGATTGGCCCCAGAGTTTCGCTTTaGAACTATACTCTTCAGCGTGGAGGCAAAAATCTG +
Preference number: 6 (lower is better)
Translates to: IRAVVIGPRVSL*NYTLQRGGKNL
Trigger: CAGATTTTTGCCTCCACGCTGAAGAGTATAGTTCAAAAGCGAAACTCTGGGGCCAATCACTACAGCTCTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061594.13
ENSMUST00000168871.2