RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANKRD28 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014496

Ensembl transcript IDs: ENSMUST00000014640.9, ENSMUST00000227089.2, ENSMUST00000227863.2, ENSMUST00000227878.2, ENSMUST00000228037.2

Found 400 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGGTGGAAAGTCATCCTTCCAGCATTCCCTTGGAGGACAGAGCTaGGCCCAAGGACAGAAGTTACCAGGAGGGAGGCTTCAGCTCCAT +
Preference number: 1 (lower is better)
Translates to: EGGKSSFQHSLGGQS*AQGQKLPGGRLQLH
Trigger: ATGGAGCTGAAGCCTCCCTCCTGGTAACTTCTGTCCTTGGGCCCAGCTCTGTCCTCCAAGGGAATGCTGGAAGGATGACTTTCCACCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CCA 90 bp AGAAGACATGGCAGAGGGTGGAAAGTCATCCTTCCAGCATTCCCTTaGAGGACAGAGCTGGGCCCAAGGACAGAAGTTACCAGGAGGGAG +
Preference number: 1 (lower is better)
Translates to: RRHGRGWKVILPAFP*RTELGPRTEVTRRE
Trigger: CTCCCTCCTGGTAACTTCTGTCCTTGGGCCCAGCTCTGTCCTCCAAGGGAATGCTGGAAGGATGACTTTCCACCCTCTGCCATGTCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR TCA 90 bp CAGGGGTGTGCAGCCTCTCTCATCAAGGTCATTCACACTTGCTCCTaGTCCCACAAGAGCAAACAGGCACTGGTAATTGCAGTTGGCAGC +
Preference number: 1 (lower is better)
Translates to: QGCAASLIKVIHTCS*SHKSKQALVIAVGS
Trigger: GCTGCCAACTGCAATTACCAGTGCCTGTTTGCTCTTGTGGGATCAGGAGCAAGTGTGAATGACCTTGATGAGAGAGGCTGCACACCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR CCA 90 bp AATGAGTCCATCTGGAAATCACTTCAGCCTGTGAAAGAGAAGACATaGCAGAGGGTGGAAAGTCATCCTTCCAGCATTCCCTTGGAGGAC +
Preference number: 1 (lower is better)
Translates to: NESIWKSLQPVKEKT*QRVESHPSSIPLED
Trigger: GTCCTCCAAGGGAATGCTGGAAGGATGACTTTCCACCCTCTGCCATGTCTTCTCTTTCACAGGCTGAAGTGATTTCCAGATGGACTCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR GCA 90 bp GGCACTCCAAATTTCCTCCAGCTGCAGCTGCGTGTAGACAGGTTCTaGCAAAATCATCTGGGGTATCTATGTCAAATCCTGAAGAAAGGA +
Preference number: 1 (lower is better)
Translates to: GTPNFLQLQLRVDRF*QNHLGYLCQILKKG
Trigger: TCCTTTCTTCAGGATTTGACATAGATACCCCAGATGATTTTGGCAGAACCTGTCTACACGCAGCTGCAGCTGGAGGAAATTTGGAGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR CCA 90 bp GCAGTGTCAGCACCACTTGTAATAAGAGTGTTGATTAGAAGCTCATaGCCATACCGGGCTGCTATATGCAAAGGGGTGTTCCCATTCTTA +
Preference number: 1 (lower is better)
Translates to: AVSAPLVIRVLIRSS*PYRAAICKGVFPFL
Trigger: TAAGAATGGGAACACCCCTTTGCATATAGCAGCCCGGTATGGCCATGAGCTTCTAATCAACACTCTTATTACAAGTGGTGCTGACACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR CCA 90 bp AGGAGTTTCCTGCAGCAATCTGAAAAACCACTTAAGGCTGCCAAATaGAGTGGGAACATTCCATGTATACCACGCTTTGCAGTGTCAGCA +
Preference number: 1 (lower is better)
Translates to: RSFLQQSEKPLKAAK*SGNIPCIPRFAVSA
Trigger: TGCTGACACTGCAAAGCGTGGTATACATGGAATGTTCCCACTCCATTTGGCAGCCTTAAGTGGTTTTTCAGATTGCTGCAGGAAACTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR TCA 90 bp TCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTaGAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACTCGG +
Preference number: 1 (lower is better)
Translates to: SVYDKKVPFSRKSPI*SFSVRTSLELQLTR
Trigger: CCGAGTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
3UTR CCA 90 bp TTGATGTTGATTTTTATAAAGAAAACATCTGAAGCCAGGCAGTGGTaGTGCACACCTTTAATCCCAGCACTTAGGAAGCTGAGACAGGTG +
Preference number: 1 (lower is better)
Translates to: LMLIFIKKTSEARQW*CTPLIPALRKLRQV
Trigger: CACCTGTCTCAGCTTCCTAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGGCTTCAGATGTTTTCTTTATAAAAATCAACATCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CCA 90 bp TTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTaGAAATCACTTCAGCCTGTGAAAGAGAAGACATGGCAGAGGGTG +
Preference number: 1 (lower is better)
Translates to: FDFNRCADNVSNESI*KSLQPVKEKTWQRV
Trigger: CACCCTCTGCCATGTCTTCTCTTTCACAGGCTGAAGTGATTTCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR TCA 90 bp CTGTTTGAGGTCACCTGTCATCGTTATCTCCCCCAAAGTTGTTTCTaGGCAAAAGCTGGTATTTCTGTAACACATATCTTAGATGTCACC +
Preference number: 1 (lower is better)
Translates to: LFEVTCHRYLPQSCF*AKAGISVTHILDVT
Trigger: GGTGACATCTAAGATATGTGTTACAGAAATACCAGCTTTTGCTCAGAAACAACTTTGGGGGAGATAACGATGACAGGTGACCTCAAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR GCA 90 bp ACAACAACAACAACAAAGGAAAGGATGCATTCAAGAACCTTCCAGTaGTGTGAGGACGCAGGAGAGGAAGCAGGTACATTTTTAAGTATT +
Preference number: 1 (lower is better)
Translates to: TTTTTKERMHSRTFQ*CEDAGEEAGTFLSI
Trigger: AATACTTAAAAATGTACCTGCTTCCTCTCCTGCGTCCTCACAGCACTGGAAGGTTCTTGAATGCATCCTTTCCTTTGTTGTTGTTGTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR GCA 90 bp ATGTTGATTTTTATAAAGAAAACATCTGAAGCCAGGCAGTGGTGGTaGACACCTTTAATCCCAGCACTTAGGAAGCTGAGACAGGTGAAT +
Preference number: 1 (lower is better)
Translates to: MLIFIKKTSEARQWW*TPLIPALRKLRQVN
Trigger: ATTCACCTGTCTCAGCTTCCTAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGGCTTCAGATGTTTTCTTTATAAAAATCAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR TCA 90 bp AACAACAACAAAGGAAAGGATGCATTCAAGAACCTTCCAGTGCTGTaGGGACGCAGGAGAGGAAGCAGGTACATTTTTAAGTATTTTCTT +
Preference number: 1 (lower is better)
Translates to: NNNKGKDAFKNLPVL*GRRRGSRYIFKYFL
Trigger: AAGAAAATACTTAAAAATGTACCTGCTTCCTCTCCTGCGTCCTCACAGCACTGGAAGGTTCTTGAATGCATCCTTTCCTTTGTTGTTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR TCA 90 bp AATTTACAGCTACATTTAGAGATCTCTGAACTAAATGGCACTGTTTaGGGTCACCTGTCATCGTTATCTCCCCCAAAGTTGTTTCTGAGC +
Preference number: 1 (lower is better)
Translates to: NLQLHLEISELNGTV*GHLSSLSPPKLFLS
Trigger: GCTCAGAAACAACTTTGGGGGAGATAACGATGACAGGTGACCTCAAACAGTGCCATTTAGTTCAGAGATCTCTAAATGTAGCTGTAAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CCA 90 bp GTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCAACACTTTCTaGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGG +
Preference number: 1 (lower is better)
Translates to: VLLYLFQILVLVNTF*DSTSKFPSSSAHQR
Trigger: CCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCCAGAAAGTGTTGACTAACACCAGTATTTGGAATAAATACAGGAGCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CCA 90 bp CACCTGTCATCGTTATCTCCCCCAAAGTTGTTTCTGAGCAAAAGCTaGTATTTCTGTAACACATATCTTAGATGTCACCTTTCTCACAGA +
Preference number: 1 (lower is better)
Translates to: HLSSLSPPKLFLSKS*YFCNTYLRCHLSHR
Trigger: TCTGTGAGAAAGGTGACATCTAAGATATGTGTTACAGAAATACCAGCTTTTGCTCAGAAACAACTTTGGGGGAGATAACGATGACAGGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR GCA 90 bp AAGACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTaGATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTG +
Preference number: 1 (lower is better)
Translates to: KTLLPNVIMFLPFVH*MIFLQVESVYDKKV
Trigger: CACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGTCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
3UTR CAA 90 bp GAGAAGACATGGCAGAGGGTGGAAAGTCATCCTTCCAGCATTCCCTaGGAGGACAGAGCTGGGCCCAAGGACAGAAGTTACCAGGAGGGA +
Preference number: 2 (lower is better)
Translates to: EKTWQRVESHPSSIP*EDRAGPKDRSYQEG
Trigger: TCCCTCCTGGTAACTTCTGTCCTTGGGCCCAGCTCTGTCCTCCAAGGGAATGCTGGAAGGATGACTTTCCACCCTCTGCCATGTCTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CAA 90 bp CATAGTGCAGGGGTGTGCAGCCTCTCTCATCAAGGTCATTCACACTaGCTCCTGATCCCACAAGAGCAAACAGGCACTGGTAATTGCAGT +
Preference number: 2 (lower is better)
Translates to: HSAGVCSLSHQGHSH*LLIPQEQTGTGNCS
Trigger: ACTGCAATTACCAGTGCCTGTTTGCTCTTGTGGGATCAGGAGCAAGTGTGAATGACCTTGATGAGAGAGGCTGCACACCCCTGCACTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR CAA 90 bp GATGTCACCTTTCTCACAGAAATTAAAGGCCGACAGACTTTCCCCTaGTGGGCGAGGATAAATACACAACCGACCCACCAGGACCAATGC +
Preference number: 2 (lower is better)
Translates to: DVTFLTEIKGRQTFP*WARINTQPTHQDQC
Trigger: GCATTGGTCCTGGTGGGTCGGTTGTGTATTTATCCTCGCCCACAAGGGGAAAGTCTGTCGGCCTTTAATTTCTGTGAGAAAGGTGACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR TCA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACTATAAAGAAAACATCTaGAGCCAGGCAGTGGTGGTG +
Preference number: 2 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYYKENI*SQAVVV
Trigger: CACCACCACTGCCTGGCTTCAGATGTTTTCTTTATA...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CCA 90 bp GCTCGTGAGGTAGTCACTGGAAGTGTTCAAGGTGGAAAGACAACCTTGGAGAAGAGGCAGTCTTCAATTTaGCAGGCAAGCTCTGACAGT +
Preference number: 2 (lower is better)
Translates to: AREVVTGSVQGGKTTLEKRQSSI*QASSDS
Trigger: ACTGTCAGAGCTTGCCTGCCAAATTGAAGACTGCCT...CTTCTCCAAGGTTGTCTTTCCACCTTGAACACTTCCAGTGACTACCTCACGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CCA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGCTTGGAGGACAGAGCTaGGCCCAAGGACAGAAGTTA +
Preference number: 2 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLLGGQS*AQGQKL
Trigger: TAACTTCTGTCCTTGGGCCCAGCTCTGTCCTCCAAG...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGCTTCCAGCATTCCCTTaGAGGACAGAGCTGGGCCCA +
Preference number: 2 (lower is better)
Translates to: YTFDFNRCADNVSNESIWLPAFP*RTELGP
Trigger: TGGGCCCAGCTCTGTCCTCCAAGGGAATGCTGGAAG...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CCA 90 bp AACGTATGGCGCTATGCTGTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCACACCAAACCGAATCTaGCCTCACTTTCAGAAGCAC +
Preference number: 2 (lower is better)
Translates to: NVWRYAVLLYLFQILVLVTPNRI*PHFQKH
Trigger: GTGCTTCTGAAAGTGAGGCCAGATTCGGTTTGGTGT...GACTAACACCAGTATTTGGAATAAATACAGGAGCACAGCATAGCGCCATACGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CCA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGAGAAGCCAGGCAGTGGTaGTGCACACCTTTAATCCCA +
Preference number: 2 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGEARQW*CTPLIP
Trigger: TGGGATTAAAGGTGTGCACCACCACTGCCTGGCTTC...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CCA 90 bp AACGTATGGCGCTATGCTGTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCGTGGAAAGACAACCTTaGAGAAGGGACTCCTGCATT +
Preference number: 2 (lower is better)
Translates to: NVWRYAVLLYLFQILVLVVERQP*RRDSCI
Trigger: AATGCAGGAGTCCCTTCTCCAAGGTTGTCTTTCCAC...GACTAACACCAGTATTTGGAATAAATACAGGAGCACAGCATAGCGCCATACGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR GCA 90 bp AATTTATCCTTTTTGTTGAAGTCTGCACCAGTATTCAGCAGAAGGTTTAGGCACATGGCCATACCGGGCTaGTATATGCAAAGGGGTGTT +
Preference number: 2 (lower is better)
Translates to: NLSFLLKSAPVFSRRFRHMAIPG*YMQRGV
Trigger: AACACCCCTTTGCATATAGCAGCCCGGTATGGCCAT...GTGCCTAAACCTTCTGCTGAATACTGGTGCAGACTTCAACAAAAAGGATAAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR-3UTR CCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGTCTGAAGCCAGGCAGTaGTGGTGCACACCTTTAATC +
Preference number: 2 (lower is better)
Translates to: YTFDFNRCADNVSNESIWSEARQ*WCTPLI
Trigger: GATTAAAGGTGTGCACCACCACTGCCTGGCTTCAGA...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR TCA 90 bp AACGTATGGCGCTATGCTGTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCCTCTTCTCTGTTACCTaGAAGGCAGTCTTCAATTTG +
Preference number: 2 (lower is better)
Translates to: NVWRYAVLLYLFQILVLVLFSVT*KAVFNL
Trigger: CAAATTGAAGACTGCCTTTCAGGTAACAGAGAAGAG...GACTAACACCAGTATTTGGAATAAATACAGGAGCACAGCATAGCGCCATACGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CCA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGAAGGCAGTCTTCAATTTaGCAGGCAAGCTCTGACAGT +
Preference number: 2 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGRQSSI*QASSDS
Trigger: ACTGTCAGAGCTTGCCTGCCAAATTGAAGACTGCCT...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGGTGAAAGAGAAGACATaGCAGAGGGTGGAAAGTCAT +
Preference number: 2 (lower is better)
Translates to: YTFDFNRCADNVSNESIWVKEKT*QRVESH
Trigger: ATGACTTTCCACCCTCTGCCATGTCTTCTCTTTCAC...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CAA 90 bp CCAGTTTCACAATACAAAAAGGGTAAGATGGAATTGGGTATCATTTaGTTGCAATGTATGGAACTTTACCCAGCTCTAGTAAGACCCCTC +
Preference number: 2 (lower is better)
Translates to: PVSQYKKGKMELGII*LQCMELYPALVRPL
Trigger: GAGGGGTCTTACTAGAGCTGGGTAAAGTTCCATACATTGCAACAAAATGATACCCAATTCCATCTTACCCTTTTTGTATTGTGAAACTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR TCA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGACTCTTCTCTGTTACCTaGAAGGCAGTCTTCAATTTG +
Preference number: 2 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGLFSVT*KAVFNL
Trigger: CAAATTGAAGACTGCCTTTCAGGTAACAGAGAAGAG...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR TCA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGATGGTCCTTGGCAATTTaGTGTGTACATAATGCCTAT +
Preference number: 2 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGWSLAI*CVHNAY
Trigger: ATAGGCATTATGTACACATCAAATTGCCAAGGACCA...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR GCA 90 bp GCACTGAAGTTTGCTTTAGACGACTTCTCATTTCATCTATTTCCGTTTCCACAACTTCCATTCGTTCACTaGATGATCTTTCTTCAGGTT +
Preference number: 2 (lower is better)
Translates to: ALKFALDDFSFHLFPFPQLPFVH*MIFLQV
Trigger: AACCTGAAGAAAGATCATGCAGTGAACGAATGGAAG...TTGTGGAAACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR GCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGCTTCCATTCGTTCACTaGATGATCTTTCTTCAGGTT +
Preference number: 2 (lower is better)
Translates to: YTFDFNRCADNVSNESIWLPFVH*MIFLQV
Trigger: AACCTGAAGAAAGATCATGCAGTGAACGAATGGAAG...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR TCA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGAGGAATCTTGATGTACTaGAAGAGTGCAAGTAAATAC +
Preference number: 2 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGGILMY*KSASKY
Trigger: GTATTTACTTGCACTCTTTCAGTACATCAAGATTCC...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CCA 90 bp TCTTCCAAATTTATCCTTTTTGTTGAAGTCTGCACCAGTATTCAGCAGAAGGTTTCTGCCAAAATCATCTaGGGTATCTATGTCAAATCC +
Preference number: 2 (lower is better)
Translates to: SSKFILFVEVCTSIQQKVSAKII*GIYVKS
Trigger: GGATTTGACATAGATACCCCAGATGATTTTGGCAGA...AACCTTCTGCTGAATACTGGTGCAGACTTCAACAAAAAGGATAAATTTGGAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR CCA 72 bp GGCAGAGGGTGGAAAGTCATCCTTCCAGCATTCCCTTaGAGGACAGAGCTGGGCCCAAGGACAGAAGTTACC +
Preference number: 3 (lower is better)
Translates to: GRGWKVILPAFP*RTELGPRTEVT
Trigger: GGTAACTTCTGTCCTTGGGCCCAGCTCTGTCCTCCAAGGGAATGCTGGAAGGATGACTTTCCACCCTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CCA 72 bp AAGTCATCCTTCCAGCATTCCCTTGGAGGACAGAGCTaGGCCCAAGGACAGAAGTTACCAGGAGGGAGGCTT +
Preference number: 3 (lower is better)
Translates to: KSSFQHSLGGQS*AQGQKLPGGRL
Trigger: AAGCCTCCCTCCTGGTAACTTCTGTCCTTGGGCCCAGCTCTGTCCTCCAAGGGAATGCTGGAAGGATGACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CAA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGCCTTCCAGCATTCCCTaGGAGGACAGAGCTGGGCCC +
Preference number: 3 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLPSSIP*EDRAGP
Trigger: GGGCCCAGCTCTGTCCTCCAAGGGAATGCTGGAAGG...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR-3UTR CAA 90 bp AGATGTAGCTGCATAGTGCAGGGGTGTGCAGCCTCTCTCATCAAGGTCATTCACCATGTATACCACGCTTaGCAGTGTCAGCACCACTTG +
Preference number: 3 (lower is better)
Translates to: RCSCIVQGCAASLIKVIHHVYHA*QCQHHL
Trigger: CAAGTGGTGCTGACACTGCAAAGCGTGGTATACATG...GTGAATGACCTTGATGAGAGAGGCTGCACACCCCTGCACTATGCAGCTACATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR TCA 72 bp GCAGCCTCTCTCATCAAGGTCATTCACACTTGCTCCTaGTCCCACAAGAGCAAACAGGCACTGGTAATTGCA +
Preference number: 3 (lower is better)
Translates to: AASLIKVIHTCS*SHKSKQALVIA
Trigger: TGCAATTACCAGTGCCTGTTTGCTCTTGTGGGATCAGGAGCAAGTGTGAATGACCTTGATGAGAGAGGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR CCA 72 bp ATCTGGAAATCACTTCAGCCTGTGAAAGAGAAGACATaGCAGAGGGTGGAAAGTCATCCTTCCAGCATTCCC +
Preference number: 3 (lower is better)
Translates to: IWKSLQPVKEKT*QRVESHPSSIP
Trigger: GGGAATGCTGGAAGGATGACTTTCCACCCTCTGCCATGTCTTCTCTTTCACAGGCTGAAGTGATTTCCAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR GCA 72 bp ACAACAAAGGAAAGGATGCATTCAAGAACCTTCCAGTaGTGTGAGGACGCAGGAGAGGAAGCAGGTACATTT +
Preference number: 3 (lower is better)
Translates to: TTKERMHSRTFQ*CEDAGEEAGTF
Trigger: AAATGTACCTGCTTCCTCTCCTGCGTCCTCACAGCACTGGAAGGTTCTTGAATGCATCCTTTCCTTTGTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR GCA 72 bp AATTTCCTCCAGCTGCAGCTGCGTGTAGACAGGTTCTaGCAAAATCATCTGGGGTATCTATGTCAAATCCTG +
Preference number: 3 (lower is better)
Translates to: NFLQLQLRVDRF*QNHLGYLCQIL
Trigger: CAGGATTTGACATAGATACCCCAGATGATTTTGGCAGAACCTGTCTACACGCAGCTGCAGCTGGAGGAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR CCA 72 bp AAGGAGACCTTCCTAACAGAGCTGCTCAACAATGAATaGACTGCTCGTGAGGTAGTCACTGGAAGTGTTCAA +
Preference number: 3 (lower is better)
Translates to: KETFLTELLNNE*TAREVVTGSVQ
Trigger: TTGAACACTTCCAGTGACTACCTCACGAGCAGTCCATTCATTGTTGAGCAGCTCTGTTAGGAAGGTCTCCTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CCA 72 bp GCACCACTTGTAATAAGAGTGTTGATTAGAAGCTCATaGCCATACCGGGCTGCTATATGCAAAGGGGTGTTC +
Preference number: 3 (lower is better)
Translates to: APLVIRVLIRSS*PYRAAICKGVF
Trigger: GAACACCCCTTTGCATATAGCAGCCCGGTATGGCCATGAGCTTCTAATCAACACTCTTATTACAAGTGGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR-3UTR CAA 90 bp CTGCCAAATGGAGTGGGAACATTCCATGTATACCACGCTTTGCAGTGTCAGCACCTTGTAATAAGAGTGTaGATTAGAAGCTCATGGCCA +
Preference number: 3 (lower is better)
Translates to: LPNGVGTFHVYHALQCQHLVIRV*IRSSWP
Trigger: TGGCCATGAGCTTCTAATCAACACTCTTATTACAAG...GTGCTGACACTGCAAAGCGTGGTATACATGGAATGTTCCCACTCCATTTGGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR TCA 72 bp TTTAAAAGCAAACCACTCAATCGTGGGCAACAGCCCTaGCTTCATCTGCGTCTGTCTCTAGTACTTTCAACC +
Preference number: 3 (lower is better)
Translates to: FKSKPLNRGQQP*LHLRLSLVLST
Trigger: GGTTGAAAGTACTAGAGACAGACGCAGATGAAGTCAGGGCTGTTGCCCACGATTGAGTGGTTTGCTTTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR TCA 72 bp AAAGGAAAGGATGCATTCAAGAACCTTCCAGTGCTGTaGGGACGCAGGAGAGGAAGCAGGTACATTTTTAAG +
Preference number: 3 (lower is better)
Translates to: KGKDAFKNLPVL*GRRRGSRYIFK
Trigger: CTTAAAAATGTACCTGCTTCCTCTCCTGCGTCCTCACAGCACTGGAAGGTTCTTGAATGCATCCTTTCCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CCA 72 bp CTTGGAGAAGGGACTCCTGCATTTAAGAGGTTAGACTaGATGGACCTCAGGTCTCTTTCAATTCTGAGATTC +
Preference number: 3 (lower is better)
Translates to: LGEGTPAFKRLD*MDLRSLSILRF
Trigger: GAATCTCAGAATTGAAAGAGACCTGAGGTCCATCCAGTCTAACCTCTTAAATGCAGGAGTCCCTTCTCCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CCA 72 bp CTGCAGCAATCTGAAAAACCACTTAAGGCTGCCAAATaGAGTGGGAACATTCCATGTATACCACGCTTTGCA +
Preference number: 3 (lower is better)
Translates to: LQQSEKPLKAAK*SGNIPCIPRFA
Trigger: TGCAAAGCGTGGTATACATGGAATGTTCCCACTCCATTTGGCAGCCTTAAGTGGTTTTTCAGATTGCTGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR GCA 72 bp TTTATAAAGAAAACATCTGAAGCCAGGCAGTGGTGGTaGACACCTTTAATCCCAGCACTTAGGAAGCTGAGA +
Preference number: 3 (lower is better)
Translates to: FIKKTSEARQWW*TPLIPALRKLR
Trigger: TCTCAGCTTCCTAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGGCTTCAGATGTTTTCTTTATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR TCA 72 bp GATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTaGAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAG +
Preference number: 3 (lower is better)
Translates to: DKKVPFSRKSPI*SFSVRTSLELQ
Trigger: CTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
3UTR TCA 72 bp CTACATTTAGAGATCTCTGAACTAAATGGCACTGTTTaGGGTCACCTGTCATCGTTATCTCCCCCAAAGTTG +
Preference number: 3 (lower is better)
Translates to: LHLEISELNGTV*GHLSSLSPPKL
Trigger: CAACTTTGGGGGAGATAACGATGACAGGTGACCTCAAACAGTGCCATTTAGTTCAGAGATCTCTAAATGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR TCA 72 bp AGTGCAGTGGAGATCTTCCAAATTTATCCTTTTTGTTaGAGTCTGCACCAGTATTCAGCAGAAGGTTTAGGC +
Preference number: 3 (lower is better)
Translates to: SAVEIFQIYPFC*SLHQYSAEGLG
Trigger: GCCTAAACCTTCTGCTGAATACTGGTGCAGACTTCAACAAAAAGGATAAATTTGGAAGATCTCCACTGCACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
3UTR GCA 72 bp ACCGAATCTGGCCTCACTTTCAGAAGCACTGAAGTTTaGTTTAGACGACTTCTCATTTCATCTATTTCCGTT +
Preference number: 3 (lower is better)
Translates to: TESGLTFRSTEV*FRRLLISSISV
Trigger: AACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGCTTCTGAAAGTGAGGCCAGATTCGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CCA 72 bp AATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTaGAAATCACTTCAGCCTGTGAAAGAGAAGACATGG +
Preference number: 3 (lower is better)
Translates to: NRCADNVSNESI*KSLQPVKEKTW
Trigger: CCATGTCTTCTCTTTCACAGGCTGAAGTGATTTCCAGATGGACTCATTAGACACATTGTCTGCACATCTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR TCA 72 bp ATTAACCCCAAATTTACAGCTACATTTAGAGATCTCTaGACTAAATGGCACTGTTTGAGGTCACCTGTCATC +
Preference number: 3 (lower is better)
Translates to: INPKFTATFRDL*TKWHCLRSPVI
Trigger: GATGACAGGTGACCTCAAACAGTGCCATTTAGTTCAGAGATCTCTAAATGTAGCTGTAAATTTGGGGTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR GCA 72 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTaGCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCA +
Preference number: 3 (lower is better)
Translates to: SFFRLNLCMIRK*LFPEKARFEVS
Trigger: TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
3UTR TCA 72 bp CTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATaGTCTTTCTTCAGGTTGAATCTGTGTATGATAAGA +
Preference number: 3 (lower is better)
Translates to: LMSSCFFHSFTA*SFFRLNLCMIR
Trigger: TCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
3UTR CAA 72 bp TGGCAGAGGGTGGAAAGTCATCCTTCCAGCATTCCCTaGGAGGACAGAGCTGGGCCCAAGGACAGAAGTTAC +
Preference number: 4 (lower is better)
Translates to: WQRVESHPSSIP*EDRAGPKDRSY
Trigger: GTAACTTCTGTCCTTGGGCCCAGCTCTGTCCTCCAAGGGAATGCTGGAAGGATGACTTTCCACCCTCTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CAA 72 bp GGGGTGTGCAGCCTCTCTCATCAAGGTCATTCACACTaGCTCCTGATCCCACAAGAGCAAACAGGCACTGGT +
Preference number: 4 (lower is better)
Translates to: GVCSLSHQGHSH*LLIPQEQTGTG
Trigger: ACCAGTGCCTGTTTGCTCTTGTGGGATCAGGAGCAAGTGTGAATGACCTTGATGAGAGAGGCTGCACACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
CDS-3UTR TCA 90 bp GCTCGTGAGGTAGTCACTGGAAGTGTTCAAGGTGGAAAGACAACCTTGGAGAAGCGGAGTCAGAGTCGTTaGGCTCATCCACGTCGGTGT +
Preference number: 4 (lower is better)
Translates to: AREVVTGSVQGGKTTLEKRSQSR*AHPRRC
Trigger: ACACCGACGTGGATGAGCTCAACGACTCTGACTCCG...CTTCTCCAAGGTTGTCTTTCCACCTTGAACACTTCCAGTGACTACCTCACGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTACTCCACATGGTCTGTaGAGGCAGCGGCATGGAGAG +
Preference number: 4 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTTPHGL*RQRHGE
Trigger: CTCTCCATGCCGCTGCCTTCACAGACCATGTGGAGT...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACCGGAGTCAGAGTCGTTaGGCTCATCCACGTCGGTGT +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHRSQSR*AHPRRC
Trigger: ACACCGACGTGGATGAGCTCAACGACTCTGACTCCG...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GGGAGCAGTGTCCCAATTTCTGGCACTGCAAAGCCAATTAAACGATCCCACAAATCTACACACTCTTCATaGCCTGTCACTGCCCCTCTG +
Preference number: 4 (lower is better)
Translates to: GSSVPISGTAKPIKRSHKSTHSS*PVTAPL
Trigger: CAGAGGGGCAGTGACAGGCCATGAAGAGTGTGTAGA...TTTGTGGGATCGTTTAATTGGCTTTGCAGTGCCAGAAATTGGGACACTGCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACCTGGATAATCGTTTGTaGTCTGGAGAATCTACCGTG +
Preference number: 4 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYLDNRL*SGESTV
Trigger: CACGGTAGATTCTCCAGATCACAAACGATTATCCAG...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACCACTTAGCACCATGTTaGAGTAATGCGTCTACACAC +
Preference number: 4 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYHLAPC*SNASTH
Trigger: GTGTGTAGACGCATTACTTCAACATGGTGCTAAGTG...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTGTGTCCACAGGCTGCTaGCAAGTGTATGGGTGTCCG +
Preference number: 4 (lower is better)
Translates to: SAFFPKKPDLKFQCQNFLVSTGC*QVYGCP
Trigger: CGGACACCCATACACTTGTCAGCAGCCTGTGGACAC...AAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GCTCGTGAGGTAGTCACTGGAAGTGTTCAAGGTGGAAAGACAACCTTGGAGAAGTTGCCACAAGCCAAATaGAGGGCGGTGTTTTTACTC +
Preference number: 4 (lower is better)
Translates to: AREVVTGSVQGGKTTLEKLPQAK*RAVFLL
Trigger: GAGTAAAAACACCGCCCTTCATTTGGCTTGTGGCAA...CTTCTCCAAGGTTGTCTTTCCACCTTGAACACTTCCAGTGACTACCTCACGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACATGTATACCACGCTTTaGAGTGTCAGCACCACTTGT +
Preference number: 4 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYMYTTL*SVSTTC
Trigger: ACAAGTGGTGCTGACACTGCAAAGCGTGGTATACAT...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTGTCACTGCCCCTCTGTaGAACGCTGTCCTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: QVESVYDKKVPFSRKSPIVTAPL*NAVLPH
Trigger: GTGGGGAAGGACAGCGTTGCACAGAGGGGCAGTGAC...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GCTCGTGAGGTAGTCACTGGAAGTGTTCAAGGTGGAAAGACAACCTTGGAGAAGGCAAGCCCAGTGAAGTaGTGTATACCCATGATTGTC +
Preference number: 4 (lower is better)
Translates to: AREVVTGSVQGGKTTLEKASPVK*CIPMIV
Trigger: GACAATCATGGGTATACAGCACTTCACTGGGCTTGC...CTTCTCCAAGGTTGTCTTTCCACCTTGAACACTTCCAGTGACTACCTCACGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTTCTACACACTCTTCATaGCCTGTCACTGCCCCTCTG +
Preference number: 4 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTSTHSS*PVTAPL
Trigger: CAGAGGGGCAGTGACAGGCCATGAAGAGTGTGTAGA...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGCAGCCACATCCTTATTaGGAGCACAGGCCAAAGCTG +
Preference number: 4 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLQPHPY*EHRPKL
Trigger: CAGCTTTGGCCTGTGCTCCCAATAAGGATGTGGCTG...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CAA 72 bp TTTCTCACAGAAATTAAAGGCCGACAGACTTTCCCCTaGTGGGCGAGGATAAATACACAACCGACCCACCAG +
Preference number: 4 (lower is better)
Translates to: FLTEIKGRQTFP*WARINTQPTHQ
Trigger: CTGGTGGGTCGGTTGTGTATTTATCCTCGCCCACAAGGGGAAAGTCTGTCGGCCTTTAATTTCTGTGAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACTGCTTCAAAAGTATCTaGACTGCTTCCTCACTACAC +
Preference number: 4 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYCFKSI*TASSLH
Trigger: GTGTAGTGAGGAAGCAGTTCAGATACTTTTGAAGCA...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTTCTGCGGAATTGACCTaGGCATTCTGGCTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: SAFFPKKPDLKFQCQNFLSAELT*AFWLSS
Trigger: GCTGCTCAGCCAGAATGCTCAGGTCAATTCCGCAGA...AAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GCTCGTGAGGTAGTCACTGGAAGTGTTCAAGGTGGAAAGACAACCTTGGAGAAGCCATTAAATATAGCTTaGACCAGTGATGGCTGGTCG +
Preference number: 4 (lower is better)
Translates to: AREVVTGSVQGGKTTLEKPLNIA*TSDGWS
Trigger: CGACCAGCCATCACTGGTGCAAGCTATATTTAATGG...CTTCTCCAAGGTTGTCTTTCCACCTTGAACACTTCCAGTGACTACCTCACGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014640.9
CDS-3UTR GCA 90 bp GGGAGCAGTGTCCCAATTTCTGGCACTGCAAAGCCAATTAAACGATCCCACAAATGCTGCCCAATGGATTaGACGCCTATCTTTCTTGTC +
Preference number: 4 (lower is better)
Translates to: GSSVPISGTAKPIKRSHKCCPMD*TPIFLV
Trigger: GACAAGAAAGATAGGCGTGCAATCCATTGGGCAGCA...TTTGTGGGATCGTTTAATTGGCTTTGCAGTGCCAGAAATTGGGACACTGCTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGGTGACCCATATATGCTaGCCAATGGATTGCACGCCT +
Preference number: 4 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLVTHIC*PMDCTP
Trigger: AGGCGTGCAATCCATTGGGCAGCATATATGGGTCAC...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GGGAGCAGTGTCCCAATTTCTGGCACTGCAAAGCCAATTAAACGATCCCACAAAACAGGCACTGGTAATTaGAGTTGGCAGCAGCATAGT +
Preference number: 4 (lower is better)
Translates to: GSSVPISGTAKPIKRSHKTGTGN*SWQQHS
Trigger: ACTATGCTGCTGCCAACTGCAATTACCAGTGCCTGT...TTTGTGGGATCGTTTAATTGGCTTTGCAGTGCCAGAAATTGGGACACTGCTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACCATAGTGCAGGGGTGTaGAGCCTCTCTCATCAAGGT +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHHSAGV*SLSHQG
Trigger: ACCTTGATGAGAGAGGCTGCACACCCCTGCACTATG...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGAGTCACTGCCCCTCTGTaGAACGCTGTCCTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGVTAPL*NAVLPH
Trigger: GTGGGGAAGGACAGCGTTGCACAGAGGGGCAGTGAC...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTGTCACTGCCCCTCTGTaGAACGCTGTCCTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPVTAPL*NAVLPH
Trigger: GTGGGGAAGGACAGCGTTGCACAGAGGGGCAGTGAC...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACCAGCCACATCCTTATTaGGAGCACAGGCCAAAGCTG +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHQPHPY*EHRPKL
Trigger: CAGCTTTGGCCTGTGCTCCCAATAAGGATGTGGCTG...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCGTGTCCACAGGCTGCTaGCAAGTGTATGGGTGTCCG +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKAVSTGC*QVYGCP
Trigger: CGGACACCCATACACTTGTCAGCAGCCTGTGGACAC...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCCACAGGCTGCTaGCAAGTGTATGGGTGTCCG +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSVSTGC*QVYGCP
Trigger: CGGACACCCATACACTTGTCAGCAGCCTGTGGACAC...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGAACTCCACATGGTCTGTaGAGGCAGCGGCATGGAGAG +
Preference number: 4 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGTPHGL*RQRHGE
Trigger: CTCTCCATGCCGCTGCCTTCACAGACCATGTGGAGT...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTCTGCGGAATTGACCTaGGCATTCTGGCTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: QVESVYDKKVPFSRKSPISAELT*AFWLSS
Trigger: GCTGCTCAGCCAGAATGCTCAGGTCAATTCCGCAGA...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACTGTCAATGGGCTACTTaGCGAGACAGGCATCATGGT +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHCQWAT*RDRHHG
Trigger: ACCATGATGCCTGTCTCGTCAAGTAGCCCATTGACA...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTCGGAGTCAGAGTCGTTaGGCTCATCCACGTCGGTGT +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPRSQSR*AHPRRC
Trigger: ACACCGACGTGGATGAGCTCAACGACTCTGACTCCG...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGCGGACACGTTCACATTaGTCAGAAGAGGTACCAAAG +
Preference number: 4 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLRTRSH*SEEVPK
Trigger: CTTTGGTACCTCTTCTGAGCAATGTGAACGTGTCCG...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTCCACTGAAAGCTGCATaGTGTAATGCAGTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTPLKAA*CNAVLP
Trigger: AGGAAGAACTGCATTACATCATGCAGCTTTCAGTGG...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AACGTATGGCGCTATGCTGTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCCAGTGCTCCATGTGTTaGTGCAGCAGCAAAGTGCAA +
Preference number: 4 (lower is better)
Translates to: NVWRYAVLLYLFQILVLVQCSMC*CSSKVQ
Trigger: TTGCACTTTGCTGCTGCATCAACACATGGAGCACTG...GACTAACACCAGTATTTGGAATAAATACAGGAGCACAGCATAGCGCCATACGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GCTCGTGAGGTAGTCACTGGAAGTGTTCAAGGTGGAAAGACAACCTTGGAGAAGCTTTACTCTTCATATTaGCATCAGCTCCATTGCCAA +
Preference number: 4 (lower is better)
Translates to: AREVVTGSVQGGKTTLEKLYSSY*HQLHCQ
Trigger: TTGGCAATGGAGCTGATGTCAATATGAAGAGTAAAG...CTTCTCCAAGGTTGTCTTTCCACCTTGAACACTTCCAGTGACTACCTCACGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACATTCACACTTGCTCCTaGTCCCACAAGAGCAAACAG +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHIHTCS*SHKSKQ
Trigger: CTGTTTGCTCTTGTGGGATCAGGAGCAAGTGTGAAT...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTCACAATGCAGGGGGCTaGAAGCATTTCCATCTATTT +
Preference number: 4 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTHNAGG*KHFHLF
Trigger: AAATAGATGGAAATGCTTTCAGCCCCCTGCATTGTG...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCACTCCACATGGTCTGTaGAGGCAGCGGCATGGAGAG +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSTPHGL*RQRHGE
Trigger: CTCTCCATGCCGCTGCCTTCACAGACCATGTGGAGT...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AACGTATGGCGCTATGCTGTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCCCTGAGCATTCTGGCTaGGCAGCAGTTGTAAACACT +
Preference number: 4 (lower is better)
Translates to: NVWRYAVLLYLFQILVLVPEHSG*AAVVNT
Trigger: AGTGTTTACAACTGCTGCTCAGCCAGAATGCTCAGG...GACTAACACCAGTATTTGGAATAAATACAGGAGCACAGCATAGCGCCATACGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGCCTGAGCATTCTGGCTaGGCAGCAGTTGTAAACACT +
Preference number: 4 (lower is better)
Translates to: LQVESVYDKKVPFSRKSPPEHSG*AAVVNT
Trigger: AGTGTTTACAACTGCTGCTCAGCCAGAATGCTCAGG...CGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCTCTGCGGAATTGACCTaGGCATTCTGGCTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKASAELT*AFWLSS
Trigger: GCTGCTCAGCCAGAATGCTCAGGTCAATTCCGCAGA...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATGGCCATACCGGGCTaGTATATGCAAAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: LQVESVYDKKVPFSRKSPMAIPG*YMQRGV
Trigger: AACACCCCTTTGCATATAGCAGCCCGGTATGGCCAT...CGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp AGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTACATGCAGAGGTGTTTaGAAGGCTGCGTTGGTTGCA +
Preference number: 4 (lower is better)
Translates to: SAFFPKKPDLKFQCQNFLTCRGV*KAALVA
Trigger: TGCAACCAACGCAGCCTTGCAAACACCTCTGCATGT...AAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp AACGTATGGCGCTATGCTGTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCTGTAAACACTCCACATaGTCTGTGAAGGCAGCGGCA +
Preference number: 4 (lower is better)
Translates to: NVWRYAVLLYLFQILVLVCKHST*SVKAAA
Trigger: TGCCGCTGCCTTCACAGACCATGTGGAGTGTTTACA...GACTAACACCAGTATTTGGAATAAATACAGGAGCACAGCATAGCGCCATACGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGTGTAAACACTCCACATaGTCTGTGAAGGCAGCGGCA +
Preference number: 4 (lower is better)
Translates to: LQVESVYDKKVPFSRKSPCKHST*SVKAAA
Trigger: TGCCGCTGCCTTCACAGACCATGTGGAGTGTTTACA...CGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GGGAGCAGTGTCCCAATTTCTGGCACTGCAAAGCCAATTAAACGATCCCACAAAATCTATGTCAAATCCTaGAGAAAGGAGTTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: GSSVPISGTAKPIKRSHKIYVKS*RKEFPA
Trigger: TGCAGGAAACTCCTTTCTTCAGGATTTGACATAGAT...TTTGTGGGATCGTTTAATTGGCTTTGCAGTGCCAGAAATTGGGACACTGCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACCGTAAGCATTCTGAATaGCCATTTGTTGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHRKHSE*PFVAAA
Trigger: TGCAGCAGCAACAAATGGTCATTCAGAATGCTTACG...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTCCTGAGCATTCTGGCTaGGCAGCAGTTGTAAACACT +
Preference number: 4 (lower is better)
Translates to: QVESVYDKKVPFSRKSPIPEHSG*AAVVNT
Trigger: AGTGTTTACAACTGCTGCTCAGCCAGAATGCTCAGG...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AACGTATGGCGCTATGCTGTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCTTGCCACAAGCCAAATaGAGGGCGGTGTTTTTACTC +
Preference number: 4 (lower is better)
Translates to: NVWRYAVLLYLFQILVLVLPQAK*RAVFLL
Trigger: GAGTAAAAACACCGCCCTTCATTTGGCTTGTGGCAA...GACTAACACCAGTATTTGGAATAAATACAGGAGCACAGCATAGCGCCATACGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGCTTGAACAACCATCGTaGGCCCATTTCGGGCAGCAA +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWLEQPS*AHFGQQ
Trigger: TTGCTGCCCGAAATGGGCTCACGATGGTTGTTCAAG...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGCAAAAGTATCTGAACTaGTTCCTCACTACACGATGC +
Preference number: 4 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLQKYLN*FLTTRC
Trigger: GCATCGTGTAGTGAGGAAGCAGTTCAGATACTTTTG...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp AACGTATGGCGCTATGCTGTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCCGGACACGTTCACATTaGTCAGAAGAGGTACCAAAG +
Preference number: 4 (lower is better)
Translates to: NVWRYAVLLYLFQILVLVRTRSH*SEEVPK
Trigger: CTTTGGTACCTCTTCTGAGCAATGTGAACGTGTCCG...GACTAACACCAGTATTTGGAATAAATACAGGAGCACAGCATAGCGCCATACGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGTGCTGCCCAATGGATTaGACGCCTATCTTTCTTGTC +
Preference number: 4 (lower is better)
Translates to: LQVESVYDKKVPFSRKSPCCPMD*TPIFLV
Trigger: GACAAGAAAGATAGGCGTGCAATCCATTGGGCAGCA...CGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGTGTCAGATGTAGCTaGATAGTGCAGGGGTGTGCA +
Preference number: 4 (lower is better)
Translates to: QVESVYDKKVPFSRKSPICVRCS*IVQGCA
Trigger: TGCACACCCCTGCACTATGCAGCTACATCTGACACA...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGGCAAGCCCAGTGAAGTaGTGTATACCCATGATTGTC +
Preference number: 4 (lower is better)
Translates to: LQVESVYDKKVPFSRKSPASPVK*CIPMIV
Trigger: GACAATCATGGGTATACAGCACTTCACTGGGCTTGC...CGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACCAAGGCTGCGTTGGTTaGATTGATGAGGTTTCTATC +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHQGCVG*IDEVSI
Trigger: GATAGAAACCTCATCAATGCAACCAACGCAGCCTTG...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGCTGGAGAATCTACCGTaGAGGGCAGTCATATGTAGT +
Preference number: 4 (lower is better)
Translates to: LQVESVYDKKVPFSRKSPLENLP*RAVICS
Trigger: ACTACATATGACTGCCCTCCACGGTAGATTCTCCAG...CGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TCTGAAAAACCACTTAAGGCTGCCAAATGGAGTGGGAACATTCCATGTATACCACTGGAGAATCTACCGTaGAGGGCAGTCATATGTAGT +
Preference number: 4 (lower is better)
Translates to: SEKPLKAAKWSGNIPCIPLENLP*RAVICS
Trigger: ACTACATATGACTGCCCTCCACGGTAGATTCTCCAG...TGGTATACATGGAATGTTCCCACTCCATTTGGCAGCCTTAAGTGGTTTTTCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
CDS-3UTR CCA 90 bp GGGAGCAGTGTCCCAATTTCTGGCACTGCAAAGCCAATTAAACGATCCCACAAATTTGTTGCTGCTGCATaGATAGGTGTTCTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: GSSVPISGTAKPIKRSHKFVAAA*IGVLFK
Trigger: TTTGAAGAGAACACCTATCCATGCAGCAGCAACAAA...TTTGTGGGATCGTTTAATTGGCTTTGCAGTGCCAGAAATTGGGACACTGCTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTGTGAAGGCAGCGGCATaGAGAGGAGTTCTTCCCTTT +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPVKAAA*RGVLPF
Trigger: AAAGGGAAGAACTCCTCTCCATGCCGCTGCCTTCAC...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTGCATCTCAACTGTATTaGTTTGTCCGTTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTASQLY*FVRFLQ
Trigger: CTGCAGAAAACGGACAAACCAATACAGTTGAGATGC...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTAGCACAGGCCAAAGCTaGGGTGTAGCCATTCTCATC +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFSTGQS*GVAILI
Trigger: GATGAGAATGGCTACACCCCAGCTTTGGCCTGTGCT...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTAGCACAGGCCAAAGCTaGGGTGTAGCCATTCTCATC +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPSTGQS*GVAILI
Trigger: GATGAGAATGGCTACACCCCAGCTTTGGCCTGTGCT...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCACAGTGCTCCATGTGTTaGTGCAGCAGCAAAGTGCAA +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSQCSMC*CSSKVQ
Trigger: TTGCACTTTGCTGCTGCATCAACACATGGAGCACTG...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GGGAGCAGTGTCCCAATTTCTGGCACTGCAAAGCCAATTAAACGATCCCACAAATGTTGCTCTATTATCTaGATCACTCAACATGTCTGT +
Preference number: 4 (lower is better)
Translates to: GSSVPISGTAKPIKRSHKCCSII*ITQHVC
Trigger: ACAGACATGTTGAGTGATTCAGATAATAGAGCAACA...TTTGTGGGATCGTTTAATTGGCTTTGCAGTGCCAGAAATTGGGACACTGCTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACAGGATTGAAGCTCCCTaGTTAATGAGTACATCCACA +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHRIEAP*LMSTST
Trigger: TGTGGATGTACTCATTAATCAGGGAGCTTCAATCCT...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GCACTGAAGTTTGCTTTAGACGACTTCTCATTTCATCTATTTCCGTTTCCACAAATCCACAGATGTTGCTaGCTGCAAAAGGGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: ALKFALDDFSFHLFPFPQIHRCC*LQKGSK
Trigger: CTTGGAGCCCTTTTGCAGTCAGCAACATCTGTGGAT...TTGTGGAAACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTATCCACAGATGTTGCTaGCTGCAAAAGGGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPIHRCC*LQKGSK
Trigger: CTTGGAGCCCTTTTGCAGTCAGCAACATCTGTGGAT...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTCACAATGCAGGGGGCTaGAAGCATTTCCATCTATTT +
Preference number: 4 (lower is better)
Translates to: SAFFPKKPDLKFQCQNFLHNAGG*KHFHLF
Trigger: AAATAGATGGAAATGCTTTCAGCCCCCTGCATTGTG...AAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTCTTGAACAACCATCGTaGGCCCATTTCGGGCAGCAA +
Preference number: 4 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLLEQPS*AHFGQQ
Trigger: TTGCTGCCCGAAATGGGCTCACGATGGTTGTTCAAG...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTTGTCAATGGGCTACTTaGCGAGACAGGCATCATGGT +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFCQWAT*RDRHHG
Trigger: ACCATGATGCCTGTCTCGTCAAGTAGCCCATTGACA...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGGTGACCCATATATGCTaGCCAATGGATTGCACGCCT +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWVTHIC*PMDCTP
Trigger: AGGCGTGCAATCCATTGGGCAGCATATATGGGTCAC...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCATGGCCATACCGGGCTaGTATATGCAAAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKAMAIPG*YMQRGV
Trigger: AACACCCCTTTGCATATAGCAGCCCGGTATGGCCAT...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGCTTTTTGTTGAAGTCTaGACCAGTATTCAGCAGAAG +
Preference number: 4 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLLFVEV*TSIQQK
Trigger: CTTCTGCTGAATACTGGTGCAGACTTCAACAAAAAG...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTCTTTTTGTTGAAGTCTaGACCAGTATTCAGCAGAAG +
Preference number: 4 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTLFVEV*TSIQQK
Trigger: CTTCTGCTGAATACTGGTGCAGACTTCAACAAAAAG...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCATAGTGCAGGGGTGTaGAGCCTCTCTCATCAAGGT +
Preference number: 4 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFHSAGV*SLSHQG
Trigger: ACCTTGATGAGAGAGGCTGCACACCCCTGCACTATG...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCTGTGTCAGATGTAGCTaGATAGTGCAGGGGTGTGCA +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKACVRCS*IVQGCA
Trigger: TGCACACCCCTGCACTATGCAGCTACATCTGACACA...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGTGTGTCAGATGTAGCTaGATAGTGCAGGGGTGTGCA +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWCVRCS*IVQGCA
Trigger: TGCACACCCCTGCACTATGCAGCTACATCTGACACA...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAACATGCAGAGGTGTTTaGAAGGCTGCGTTGGTTGCA +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSTCRGV*KAALVA
Trigger: TGCAACCAACGCAGCCTTGCAAACACCTCTGCATGT...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCACATGCAGAGGTGTTTaGAAGGCTGCGTTGGTTGCA +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKATCRGV*KAALVA
Trigger: TGCAACCAACGCAGCCTTGCAAACACCTCTGCATGT...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTTTTCGGGCAGCAACATaGAGAGGTGTTTGCAAGGCT +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFFRAAT*RGVCKA
Trigger: AGCCTTGCAAACACCTCTGCATGTTGCTGCCCGAAA...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGTCTGCCAAAATCATCTaGGGTATCTATGTCAAATCC +
Preference number: 4 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLSAKII*GIYVKS
Trigger: GGATTTGACATAGATACCCCAGATGATTTTGGCAGA...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTCCCGGATCCCTGGGTTaGCATCATTTCTTAGTAAGT +
Preference number: 4 (lower is better)
Translates to: QVESVYDKKVPFSRKSPIPGSLG*HHFLVS
Trigger: ACTTACTAAGAAATGATGCCAACCCAGGGATCCGGG...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCGTGAAGGCAGCGGCATaGAGAGGAGTTCTTCCCTTT +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSVKAAA*RGVLPF
Trigger: AAAGGGAAGAACTCCTCTCCATGCCGCTGCCTTCAC...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTGTGAAGGCAGCGGCATaGAGAGGAGTTCTTCCCTTT +
Preference number: 4 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLVKAAA*RGVLPF
Trigger: AAAGGGAAGAACTCCTCTCCATGCCGCTGCCTTCAC...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCATGTAAACACTCCACATaGTCTGTGAAGGCAGCGGCA +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSCKHST*SVKAAA
Trigger: TGCCGCTGCCTTCACAGACCATGTGGAGTGTTTACA...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCTCTCACCATGCCCACTaGAAGCTGCATGATGTAATG +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKASHHAH*KLHDVM
Trigger: CATTACATCATGCAGCTTTCAGTGGGCATGGTGAGA...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TGTATACCACGCTTTGCAGTGTCAGCACCACTTGTAATAAGAGTGTTGATTAGACTGGATAATCGTTTGTaGTCTGGAGAATCTACCGTG +
Preference number: 4 (lower is better)
Translates to: CIPRFAVSAPLVIRVLIRLDNRL*SGESTV
Trigger: CACGGTAGATTCTCCAGATCACAAACGATTATCCAG...TCTAATCAACACTCTTATTACAAGTGGTGCTGACACTGCAAAGCGTGGTATACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
CDS-3UTR TCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACATCTATGTCAAATCCTaGAGAAAGGAGTTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHIYVKS*RKEFPA
Trigger: TGCAGGAAACTCCTTTCTTCAGGATTTGACATAGAT...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCATTCACACTTGCTCCTaGTCCCACAAGAGCAAACAG +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKAIHTCS*SHKSKQ
Trigger: CTGTTTGCTCTTGTGGGATCAGGAGCAAGTGTGAAT...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GCACTGAAGTTTGCTTTAGACGACTTCTCATTTCATCTATTTCCGTTTCCACAAATTCACACTTGCTCCTaGTCCCACAAGAGCAAACAG +
Preference number: 4 (lower is better)
Translates to: ALKFALDDFSFHLFPFPQIHTCS*SHKSKQ
Trigger: CTGTTTGCTCTTGTGGGATCAGGAGCAAGTGTGAAT...TTGTGGAAACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCAGTGCTGTATACCCATaGTTGTCTACTACGGCTGGA +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKASAVYP*LSTTAG
Trigger: TCCAGCCGTAGTAGACAATCATGGGTATACAGCACT...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCTTGCCACAAGCCAAATaGAGGGCGGTGTTTTTACTC +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKALPQAK*RAVFLL
Trigger: GAGTAAAAACACCGCCCTTCATTTGGCTTGTGGCAA...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCATCCACTAGAGGCTGCTaGATGAAGAGGTGTGTAAGA +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSSTRGC*MKRCVR
Trigger: TCTTACACACCTCTTCATGCAGCAGCCTCTAGTGGA...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGTCCACTAGAGGCTGCTaGATGAAGAGGTGTGTAAGA +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWSTRGC*MKRCVR
Trigger: TCTTACACACCTCTTCATGCAGCAGCCTCTAGTGGA...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCACATTCCACTAGAGGCTaGTGCATGAAGAGGTGTGTA +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSHSTRG*CMKRCV
Trigger: TACACACCTCTTCATGCAGCAGCCTCTAGTGGAATG...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGCATTCCACTAGAGGCTaGTGCATGAAGAGGTGTGTA +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWHSTRG*CMKRCV
Trigger: TACACACCTCTTCATGCAGCAGCCTCTAGTGGAATG...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCATGGCCATACCGGGCTaGTATATGCAAAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSMAIPG*YMQRGV
Trigger: AACACCCCTTTGCATATAGCAGCCCGGTATGGCCAT...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTACAGGCACTGGTAATTaGAGTTGGCAGCAGCATAGT +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPTGTGN*SWQQHS
Trigger: ACTATGCTGCTGCCAACTGCAATTACCAGTGCCTGT...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAACATAGTGCAGGGGTGTaGAGCCTCTCTCATCAAGGT +
Preference number: 4 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKHSAGV*SLSHQG
Trigger: ACCTTGATGAGAGAGGCTGCACACCCCTGCACTATG...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGCAAGCCCAGTGAAGTaGTGTATACCCATGATTGTC +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSASPVK*CIPMIV
Trigger: GACAATCATGGGTATACAGCACTTCACTGGGCTTGC...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAAGGTGTTTGCAAGGCTaGGTTGGTTGCATTGATGAG +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSRCLQG*VGCIDE
Trigger: CTCATCAATGCAACCAACGCAGCCTTGCAAACACCT...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTAGGTGTTTGCAAGGCTaGGTTGGTTGCATTGATGAG +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPRCLQG*VGCIDE
Trigger: CTCATCAATGCAACCAACGCAGCCTTGCAAACACCT...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCTTTCGGGCAGCAACATaGAGAGGTGTTTGCAAGGCT +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSFRAAT*RGVCKA
Trigger: AGCCTTGCAAACACCTCTGCATGTTGCTGCCCGAAA...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGGTTTCCATAGGCATTTaGTTCATTCATATCAACTCC +
Preference number: 4 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLVSIGI*FIHINS
Trigger: GGAGTTGATATGAATGAACCAAATGCCTATGGAAAC...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTCTGGAGAATCTACCGTaGAGGGCAGTCATATGTAGT +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFLENLP*RAVICS
Trigger: ACTACATATGACTGCCCTCCACGGTAGATTCTCCAG...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACTCTGCCAAAATCATCTaGGGTATCTATGTCAAATCC +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHSAKII*GIYVKS
Trigger: GGATTTGACATAGATACCCCAGATGATTTTGGCAGA...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTCCCGGATCCCTGGGTTaGCATCATTTCTTAGTAAGT +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPPGSLG*HHFLVS
Trigger: ACTTACTAAGAAATGATGCCAACCCAGGGATCCGGG...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGCCCGGATCCCTGGGTTaGCATCATTTCTTAGTAAGT +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWPGSLG*HHFLVS
Trigger: ACTTACTAAGAAATGATGCCAACCCAGGGATCCGGG...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAATCTACACACTCTTCATaGCCTGTCACTGCCCCTCTG +
Preference number: 4 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKSTHSS*PVTAPL
Trigger: CAGAGGGGCAGTGACAGGCCATGAAGAGTGTGTAGA...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTGTCTACTACGGCTaGATTTGCATCCACAGATGT +
Preference number: 4 (lower is better)
Translates to: LQVESVYDKKVPFSRKSPIVYYG*ICIHRC
Trigger: ACATCTGTGGATGCAAATCCAGCCGTAGTAGACAAT...CGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTCCCTTTGAGTCTGTaGCATTCACAATGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPFPLSL*HSQCWL
Trigger: GAGCCAGCATTGTGAATGCCACAGACTCAAAGGGAA...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGTTCCCTTTGAGTCTGTaGCATTCACAATGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWFPLSL*HSQCWL
Trigger: GAGCCAGCATTGTGAATGCCACAGACTCAAAGGGAA...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAAGCACAGGCCAAAGCTaGGGTGTAGCCATTCTCATC +
Preference number: 4 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKSTGQS*GVAILI
Trigger: GATGAGAATGGCTACACCCCAGCTTTGGCCTGTGCT...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAACAGCCACATCCTTATTaGGAGCACAGGCCAAAGCTG +
Preference number: 4 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKQPHPY*EHRPKL
Trigger: CAGCTTTGGCCTGTGCTCCCAATAAGGATGTGGCTG...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACCTCTTCTCATTGTCCTaGAAGTTAACATCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHLFSLS*KLTSSF
Trigger: GAAAGAAGATGTTAACTTTCAGGACAATGAGAAGAG...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCTCTCACCATGCCCACTaGAAGCTGCATGATGTAATG +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSSHHAH*KLHDVM
Trigger: CATTACATCATGCAGCTTTCAGTGGGCATGGTGAGA...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAACAGTGCTCCATGTGTTaGTGCAGCAGCAAAGTGCAA +
Preference number: 4 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKQCSMC*CSSKVQ
Trigger: TTGCACTTTGCTGCTGCATCAACACATGGAGCACTG...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTCTTTACTCTTCATATTaGCATCAGCTCCATTGCCAA +
Preference number: 4 (lower is better)
Translates to: SAFFPKKPDLKFQCQNFLLYSSY*HQLHCQ
Trigger: TTGGCAATGGAGCTGATGTCAATATGAAGAGTAAAG...AAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCACTGGATAATCGTTTGTaGTCTGGAGAATCTACCGTG +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSLDNRL*SGESTV
Trigger: CACGGTAGATTCTCCAGATCACAAACGATTATCCAG...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGACTGGATAATCGTTTGTaGTCTGGAGAATCTACCGTG +
Preference number: 4 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGLDNRL*SGESTV
Trigger: CACGGTAGATTCTCCAGATCACAAACGATTATCCAG...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCACGTAAGCATTCTGAATaGCCATTTGTTGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSRKHSE*PFVAAA
Trigger: TGCAGCAGCAACAAATGGTCATTCAGAATGCTTACG...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTCGTAAGCATTCTGAATaGCCATTTGTTGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFRKHSE*PFVAAA
Trigger: TGCAGCAGCAACAAATGGTCATTCAGAATGCTTACG...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACTGTCCATTTCCATCTTaGATATCTACTGCATTCTGT +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHCPFPS*ISTAFC
Trigger: ACAGAATGCAGTAGATATTCAAGATGGAAATGGACA...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTCACTTAGCACCATGTTaGAGTAATGCGTCTACACAC +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFHLAPC*SNASTH
Trigger: GTGTGTAGACGCATTACTTCAACATGGTGCTAAGTG...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTAGTGCTGTATACCCATaGTTGTCTACTACGGCTGGA +
Preference number: 4 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFSAVYP*LSTTAG
Trigger: TCCAGCCGTAGTAGACAATCATGGGTATACAGCACT...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTAGGAGTTCTTCCCTTTaGGTCTGTGGCATTCACAAT +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPRSSSL*VCGIHN
Trigger: ATTGTGAATGCCACAGACTCAAAGGGAAGAACTCCT...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAATGTCAATGGGCTACTTaGCGAGACAGGCATCATGGT +
Preference number: 4 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKCQWAT*RDRHHG
Trigger: ACCATGATGCCTGTCTCGTCAAGTAGCCCATTGACA...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTTCGAGCATTAACATCTaGAGAATGCTTCAAAAGTAT +
Preference number: 4 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTSSINI*RMLQKY
Trigger: ATACTTTTGAAGCATTCTGCAGATGTTAATGCTCGA...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGTGACCCATATATGCTaGCCAATGGATTGCACGCCT +
Preference number: 4 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKVTHIC*PMDCTP
Trigger: AGGCGTGCAATCCATTGGGCAGCATATATGGGTCAC...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAAATGTGACCCATATATaGTGCCCAATGGATTGCACG +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSNVTHI*CPMDCT
Trigger: CGTGCAATCCATTGGGCAGCATATATGGGTCACATT...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGAATGTGACCCATATATaGTGCCCAATGGATTGCACG +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWNVTHI*CPMDCT
Trigger: CGTGCAATCCATTGGGCAGCATATATGGGTCACATT...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTTCCACTAGAGGCTGCTaGATGAAGAGGTGTGTAAGA +
Preference number: 4 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFSTRGC*MKRCVR
Trigger: TCTTACACACCTCTTCATGCAGCAGCCTCTAGTGGA...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCATTCCACTAGAGGCTaGTGCATGAAGAGGTGTGTA +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSHSTRG*CMKRCV
Trigger: TACACACCTCTTCATGCAGCAGCCTCTAGTGGAATG...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTCGTGTAGACAGGTTCTaGCAAAATCATCTGGGGTAT +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFRVDRF*QNHLGY
Trigger: ATACCCCAGATGATTTTGGCAGAACCTGTCTACACG...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTACAGGCACTGGTAATTaGAGTTGGCAGCAGCATAGT +
Preference number: 4 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFTGTGN*SWQQHS
Trigger: ACTATGCTGCTGCCAACTGCAATTACCAGTGCCTGT...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCACAGATGTTGCTGACTaGAAAAGGGCTCCAAGAACT +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKATDVAD*KRAPRT
Trigger: AGTTCTTGGAGCCCTTTTGCAGTCAGCAACATCTGT...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTACAGATGTTGCTGACTaGAAAAGGGCTCCAAGAACT +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPTDVAD*KRAPRT
Trigger: AGTTCTTGGAGCCCTTTTGCAGTCAGCAACATCTGT...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACGTTTCCATAGGCATTTaGTTCATTCATATCAACTCC +
Preference number: 4 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHVSIGI*FIHINS
Trigger: GGAGTTGATATGAATGAACCAAATGCCTATGGAAAC...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCTGGAGAATCTACCGTaGAGGGCAGTCATATGTAGT +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSLENLP*RAVICS
Trigger: ACTACATATGACTGCCCTCCACGGTAGATTCTCCAG...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCACTTAAGGCTGCCAAATaGAGTGGGAACATTCCATGT +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSLKAAK*SGNIPC
Trigger: ACATGGAATGTTCCCACTCCATTTGGCAGCCTTAAG...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GCACTGAAGTTTGCTTTAGACGACTTCTCATTTCATCTATTTCCGTTTCCACAACTTAAGGCTGCCAAATaGAGTGGGAACATTCCATGT +
Preference number: 4 (lower is better)
Translates to: ALKFALDDFSFHLFPFPQLKAAK*SGNIPC
Trigger: ACATGGAATGTTCCCACTCCATTTGGCAGCCTTAAG...TTGTGGAAACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTATTGTCTACTACGGCTaGATTTGCATCCACAGATGT +
Preference number: 4 (lower is better)
Translates to: QVESVYDKKVPFSRKSPIIVYYG*ICIHRC
Trigger: ACATCTGTGGATGCAAATCCAGCCGTAGTAGACAAT...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CAGCAATCTGAAAAACCACTTAAGGCTGCCAAATGGAGTGGGAACATTCCATGTCTCTTTTTACCACTCTaGATAATCGTTTGTGATCTG +
Preference number: 4 (lower is better)
Translates to: QQSEKPLKAAKWSGNIPCLFLPL*IIVCDL
Trigger: CAGATCACAAACGATTATCCAGAGTGGTAAAAAGAG...ACATGGAATGTTCCCACTCCATTTGGCAGCCTTAAGTGGTTTTTCAGATTGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000227878.2
CDS-3UTR TCA 90 bp AGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTTGTTGCTCTATTATCTaGATCACTCAACATGTCTGT +
Preference number: 4 (lower is better)
Translates to: SAFFPKKPDLKFQCQNFLCCSII*ITQHVC
Trigger: ACAGACATGTTGAGTGATTCAGATAATAGAGCAACA...AAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTAGGATTGAAGCTCCCTaGTTAATGAGTACATCCACA +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPRIEAP*LMSTST
Trigger: TGTGGATGTACTCATTAATCAGGGAGCTTCAATCCT...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTTGTCCATTTCCATCTTaGATATCTACTGCATTCTGT +
Preference number: 4 (lower is better)
Translates to: SAFFPKKPDLKFQCQNFLCPFPS*ISTAFC
Trigger: ACAGAATGCAGTAGATATTCAAGATGGAAATGGACA...AAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCACTTAGCACCATGTTaGAGTAATGCGTCTACACAC +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSHLAPC*SNASTH
Trigger: GTGTGTAGACGCATTACTTCAACATGGTGCTAAGTG...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ATATTTACCCTTCTCCCACTATTAATTACGAAGGGTTCATTACGACTCCTTTATAGTGCTGTATACCCATaGTTGTCTACTACGGCTGGA +
Preference number: 4 (lower is better)
Translates to: IFTLLPLLITKGSLRLLYSAVYP*LSTTAG
Trigger: TCCAGCCGTAGTAGACAATCATGGGTATACAGCACT...ATAAAGGAGTCGTAATGAACCCTTCGTAATTAATAGTGGGAGAAGGGTAAATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCACAATGCAGGGGGCTaGAAGCATTTCCATCTATTT +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSHNAGG*KHFHLF
Trigger: AAATAGATGGAAATGCTTTCAGCCCCCTGCATTGTG...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAATGCTGCCCAATGGATTaGACGCCTATCTTTCTTGTC +
Preference number: 4 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKCCPMD*TPIFLV
Trigger: GACAAGAAAGATAGGCGTGCAATCCATTGGGCAGCA...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTAATGTGACCCATATATaGTGCCCAATGGATTGCACG +
Preference number: 4 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLNVTHI*CPMDCT
Trigger: CGTGCAATCCATTGGGCAGCATATATGGGTCACATT...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCATGTATACCACGCTTTaGAGTGTCAGCACCACTTGT +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSMYTTL*SVSTTC
Trigger: ACAAGTGGTGCTGACACTGCAAAGCGTGGTATACAT...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTATGTATACCACGCTTTaGAGTGTCAGCACCACTTGT +
Preference number: 4 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLMYTTL*SVSTTC
Trigger: ACAAGTGGTGCTGACACTGCAAAGCGTGGTATACAT...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCGTGTAGACAGGTTCTaGCAAAATCATCTGGGGTAT +
Preference number: 4 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFRVDRF*QNHLGY
Trigger: ATACCCCAGATGATTTTGGCAGAACCTGTCTACACG...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCAAGGCTGCGTTGGTTaGATTGATGAGGTTTCTATC +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSQGCVG*IDEVSI
Trigger: GATAGAAACCTCATCAATGCAACCAACGCAGCCTTG...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTCCATTAAATATAGCTTaGACCAGTGATGGCAACACA +
Preference number: 4 (lower is better)
Translates to: QVESVYDKKVPFSRKSPIPLNIA*TSDGNT
Trigger: TGTGTTGCCATCACTGGTGCAAGCTATATTTAATGG...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp AGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTCAAAAGCATTTATATTaGCACCTCTGGACAAGAGTA +
Preference number: 4 (lower is better)
Translates to: SAFFPKKPDLKFQCQNFLQKHLY*HLWTRV
Trigger: TACTCTTGTCCAGAGGTGCCAATATAAATGCTTTTG...AAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAATTGTCTACTACGGCTaGATTTGCATCCACAGATGT +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSIVYYG*ICIHRC
Trigger: ACATCTGTGGATGCAAATCCAGCCGTAGTAGACAAT...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTTGGCATTCACAATGCTaGCTCCTAAGGAATCAATCA +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFWHSQC*LLRNQS
Trigger: TGATTGATTCCTTAGGAGCCAGCATTGTGAATGCCA...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAATTCCCTTTGAGTCTGTaGCATTCACAATGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKFPLSL*HSQCWL
Trigger: GAGCCAGCATTGTGAATGCCACAGACTCAAAGGGAA...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGCATCTCAACTGTATTaGTTTGTCCGTTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFASQLY*FVRFLQ
Trigger: CTGCAGAAAACGGACAAACCAATACAGTTGAGATGC...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCTGCTTCAAAAGTATCTaGACTGCTTCCTCACTACAC +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSCFKSI*TASSLH
Trigger: GTGTAGTGAGGAAGCAGTTCAGATACTTTTGAAGCA...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGCTTTACTCTTCATATTaGCATCAGCTCCATTGCCAA +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWLYSSY*HQLHCQ
Trigger: TTGGCAATGGAGCTGATGTCAATATGAAGAGTAAAG...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTATCTATGTCAAATCCTaGAGAAAGGAGTTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFIYVKS*RKEFPA
Trigger: TGCAGGAAACTCCTTTCTTCAGGATTTGACATAGAT...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ATGCATATTTACCCTTCTCCCACTATTAATTACGAAGGGTTCATTACGACTCCTATCTTTTACGAGGATTaGAGCTCCCTGATTAATGAG +
Preference number: 4 (lower is better)
Translates to: MHIYPSPTINYEGFITTPIFYED*SSLINE
Trigger: CTCATTAATCAGGGAGCTTCAATCCTCGTAAAAGAT...AGGAGTCGTAATGAACCCTTCGTAATTAATAGTGGGAGAAGGGTAAATATGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ATATTTACCCTTCTCCCACTATTAATTACGAAGGGTTCATTACGACTCCTTTATAGGAGTTCTTCCCTTTaGGTCTGTGGCATTCACAAT +
Preference number: 4 (lower is better)
Translates to: IFTLLPLLITKGSLRLLYRSSSL*VCGIHN
Trigger: ATTGTGAATGCCACAGACTCAAAGGGAAGAACTCCT...ATAAAGGAGTCGTAATGAACCCTTCGTAATTAATAGTGGGAGAAGGGTAAATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCAAAAGTATCTGAACTaGTTCCTCACTACACGATGC +
Preference number: 4 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFQKYLN*FLTTRC
Trigger: GCATCGTGTAGTGAGGAAGCAGTTCAGATACTTTTG...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp ATATTTACCCTTCTCCCACTATTAATTACGAAGGGTTCATTACGACTCCTTTATACAGATGTTGCTGACTaGAAAAGGGCTCCAAGAACT +
Preference number: 4 (lower is better)
Translates to: IFTLLPLLITKGSLRLLYTDVAD*KRAPRT
Trigger: AGTTCTTGGAGCCCTTTTGCAGTCAGCAACATCTGT...ATAAAGGAGTCGTAATGAACCCTTCGTAATTAATAGTGGGAGAAGGGTAAATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAACAAGGCTGCGTTGGTTaGATTGATGAGGTTTCTATC +
Preference number: 4 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKQGCVG*IDEVSI
Trigger: GATAGAAACCTCATCAATGCAACCAACGCAGCCTTG...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GCACTGAAGTTTGCTTTAGACGACTTCTCATTTCATCTATTTCCGTTTCCACAATGCTCGGACTTCATCTaGATCACCATTAAATATAGC +
Preference number: 4 (lower is better)
Translates to: ALKFALDDFSFHLFPFPQCSDFI*ITIKYS
Trigger: GCTATATTTAATGGTGATCCAGATGAAGTCCGAGCA...TTGTGGAAACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAACTTAAGGCTGCCAAATaGAGTGGGAACATTCCATGT +
Preference number: 4 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKLKAAK*SGNIPC
Trigger: ACATGGAATGTTCCCACTCCATTTGGCAGCCTTAAG...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTGCATCTCAACTGTATTaGTTTGTCCGTTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFASQLY*FVRFLQ
Trigger: CTGCAGAAAACGGACAAACCAATACAGTTGAGATGC...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp GCACTGAAGTTTGCTTTAGACGACTTCTCATTTCATCTATTTCCGTTTCCACAACTCTTCTCATTGTCCTaGAAGTTAACATCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: ALKFALDDFSFHLFPFPQLFSLS*KLTSSF
Trigger: GAAAGAAGATGTTAACTTTCAGGACAATGAGAAGAG...TTGTGGAAACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGGTCACTTCAGCTCCATaGGATACAAGTAATTTTACT +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWVTSAP*DTSNFT
Trigger: AGTAAAATTACTTGTATCTCATGGAGCTGAAGTGAC...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGGATTGAAGCTCCCTaGTTAATGAGTACATCCACA +
Preference number: 4 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKRIEAP*LMSTST
Trigger: TGTGGATGTACTCATTAATCAGGGAGCTTCAATCCT...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTATCTTTTACGAGGATTaGAGCTCCCTGATTAATGAG +
Preference number: 4 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLIFYED*SSLINE
Trigger: CTCATTAATCAGGGAGCTTCAATCCTCGTAAAAGAT...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGAAAGCTAACTGTTTTTaGGGTGTTGGTATAACGGTT +
Preference number: 4 (lower is better)
Translates to: YTFDFNRCADNVSNESIWKANCF*GVGITV
Trigger: AACCGTTATACCAACACCTCAAAAACAGTTAGCTTT...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGAAAAGCTAACTGTTTTTaGGGTGTTGGTATAACGGTT +
Preference number: 4 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGKANCF*GVGITV
Trigger: AACCGTTATACCAACACCTCAAAAACAGTTAGCTTT...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCTGCTCGGACTTCATCTaGATCACCATTAAATATAGC +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSCSDFI*ITIKYS
Trigger: GCTATATTTAATGGTGATCCAGATGAAGTCCGAGCA...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTCAAAAGCATTTATATTaGCACCTCTGGACAAGAGTA +
Preference number: 4 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPQKHLY*HLWTRV
Trigger: TACTCTTGTCCAGAGGTGCCAATATAAATGCTTTTG...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCGTTTCCATAGGCATTTaGTTCATTCATATCAACTCC +
Preference number: 4 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKAVSIGI*FIHINS
Trigger: GGAGTTGATATGAATGAACCAAATGCCTATGGAAAC...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTTTTGTTGCTGCTGCATaGATAGGTGTTCTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLFVAAA*IGVLFK
Trigger: TTTGAAGAGAACACCTATCCATGCAGCAGCAACAAA...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTTTTGTTGCTGCTGCATaGATAGGTGTTCTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFFVAAA*IGVLFK
Trigger: TTTGAAGAGAACACCTATCCATGCAGCAGCAACAAA...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp ATATTTACCCTTCTCCCACTATTAATTACGAAGGGTTCATTACGACTCCTTTATTGGCATTCACAATGCTaGCTCCTAAGGAATCAATCA +
Preference number: 4 (lower is better)
Translates to: IFTLLPLLITKGSLRLLYWHSQC*LLRNQS
Trigger: TGATTGATTCCTTAGGAGCCAGCATTGTGAATGCCA...ATAAAGGAGTCGTAATGAACCCTTCGTAATTAATAGTGGGAGAAGGGTAAATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCGTCACTTCAGCTCCATaGGATACAAGTAATTTTACT +
Preference number: 4 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSVTSAP*DTSNFT
Trigger: AGTAAAATTACTTGTATCTCATGGAGCTGAAGTGAC...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTTGTTGCTCTATTATCTaGATCACTCAACATGTCTGT +
Preference number: 4 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLCCSII*ITQHVC
Trigger: ACAGACATGTTGAGTGATTCAGATAATAGAGCAACA...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAATCTTTTACGAGGATTaGAGCTCCCTGATTAATGAG +
Preference number: 4 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKIFYED*SSLINE
Trigger: CTCATTAATCAGGGAGCTTCAATCCTCGTAAAAGAT...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTAAAGCTAACTGTTTTTaGGGTGTTGGTATAACGGTT +
Preference number: 4 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLKANCF*GVGITV
Trigger: AACCGTTATACCAACACCTCAAAAACAGTTAGCTTT...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCATCGAGCATTAACATCTaGAGAATGCTTCAAAAGTAT +
Preference number: 4 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSSSINI*RMLQKY
Trigger: ATACTTTTGAAGCATTCTGCAGATGTTAATGCTCGA...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR GCA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAACTTTTTGTTGAAGTCTaGACCAGTATTCAGCAGAAG +
Preference number: 4 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKLFVEV*TSIQQK
Trigger: CTTCTGCTGAATACTGGTGCAGACTTCAACAAAAAG...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAATCTGCCAAAATCATCTaGGGTATCTATGTCAAATCC +
Preference number: 4 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKSAKII*GIYVKS
Trigger: GGATTTGACATAGATACCCCAGATGATTTTGGCAGA...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR TCA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGTCACTTCAGCTCCATaGGATACAAGTAATTTTACT +
Preference number: 4 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKVTSAP*DTSNFT
Trigger: AGTAAAATTACTTGTATCTCATGGAGCTGAAGTGAC...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CCA 90 bp ATATTTACCCTTCTCCCACTATTAATTACGAAGGGTTCATTACGACTCCTTTATCAAAAGCATTTATATTaGCACCTCTGGACAAGAGTA +
Preference number: 4 (lower is better)
Translates to: IFTLLPLLITKGSLRLLYQKHLY*HLWTRV
Trigger: TACTCTTGTCCAGAGGTGCCAATATAAATGCTTTTG...ATAAAGGAGTCGTAATGAACCCTTCGTAATTAATAGTGGGAGAAGGGTAAATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CAA 72 bp TACAAAAAGGGTAAGATGGAATTGGGTATCATTTTGTaGCAATGTATGGAACTTTACCCAGCTCTAGTAAGA +
Preference number: 4 (lower is better)
Translates to: YKKGKMELGIIL*QCMELYPALVR
Trigger: TCTTACTAGAGCTGGGTAAAGTTCCATACATTGCAACAAAATGATACCCAATTCCATCTTACCCTTTTTGTA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
3UTR CAA 72 bp CAATACAAAAAGGGTAAGATGGAATTGGGTATCATTTaGTTGCAATGTATGGAACTTTACCCAGCTCTAGTA +
Preference number: 4 (lower is better)
Translates to: QYKKGKMELGII*LQCMELYPALV
Trigger: TACTAGAGCTGGGTAAAGTTCCATACATTGCAACAAAATGATACCCAATTCCATCTTACCCTTTTTGTATTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS TCA 90 bp GGTGTCCGACCCCGGCTGTCCCGTAGTAAGCACTTAGCACCATGTTaGAGTAATGCGTCTACACACTCTTCATGGCCTGTCACTGCCCCT +
Preference number: 5 (lower is better)
Translates to: GVRPRLSRSKHLAPC*SNASTHSSWPVTAP
Trigger: AGGGGCAGTGACAGGCCATGAAGAGTGTGTAGACGCATTACTTCAACATGGTGCTAAGTGCTTACTACGGGACAGCCGGGGTCGGACACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACTCGGAGTCAGAGTCGTaGAGCTCATCCACGTCGGTG +
Preference number: 5 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYSESES*SSSTSV
Trigger: CACCGACGTGGATGAGCTCAACGACTCTGACTCCGA...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS TCA 90 bp TTCTCATCAACAGCAAGCACACTGGCTCCTTTCCCCAGGAGCTCTTaGACAACCATCGTGAGCCCATTTCGGGCAGCAACATGCAGAGGT +
Preference number: 5 (lower is better)
Translates to: FSSTASTLAPFPRSS*TTIVSPFRAATCRG
Trigger: ACCTCTGCATGTTGCTGCCCGAAATGGGCTCACGATGGTTGTTCAAGAGCTCCTGGGGAAAGGAGCCAGTGTGCTTGCTGTTGATGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACAACATGCAGAGGTGTTaGCAAGGCTGCGTTGGTTGC +
Preference number: 5 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYNMQRC*QGCVGC
Trigger: GCAACCAACGCAGCCTTGCAAACACCTCTGCATGTT...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS TCA 90 bp CCCATGATTGTCTACTACGGCTGGATTTGCATCCACAGATGTTGCTaGCTGCAAAAGGGCTCCAAGAACTCCAATGTGTCCACAGGCTGC +
Preference number: 5 (lower is better)
Translates to: PMIVYYGWICIHRCC*LQKGSKNSNVSTGC
Trigger: GCAGCCTGTGGACACATTGGAGTTCTTGGAGCCCTTTTGCAGTCAGCAACATCTGTGGATGCAAATCCAGCCGTAGTAGACAATCATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACCATGTATACCACGCTTaGCAGTGTCAGCACCACTTG +
Preference number: 5 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYHVYHA*QCQHHL
Trigger: CAAGTGGTGCTGACACTGCAAAGCGTGGTATACATG...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS TCA 90 bp GCCATCATGAGAGGTGTTTTTCCGGTAGAGTCTGCGGAATTGACCTaGGCATTCTGGCTGAGCAGCAGTTGTAAACACTCCACATGGTCT +
Preference number: 5 (lower is better)
Translates to: AIMRGVFPVESAELT*AFWLSSSCKHSTWS
Trigger: AGACCATGTGGAGTGTTTACAACTGCTGCTCAGCCAGAATGCTCAGGTCAATTCCGCAGACTCTACCGGAAAAACACCTCTCATGATGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 90 bp CGGCATGGAGAGGAGTTCTTCCCTTTGAGTCTGTGGCATTCACAATaGTGGCTCCTAAGGAATCAATCAGCATCTCAGCTGCACCTTCAT +
Preference number: 5 (lower is better)
Translates to: RHGEEFFPLSLWHSQ*WLLRNQSASQLHLH
Trigger: ATGAAGGTGCAGCTGAGATGCTGATTGATTCCTTAGGAGCCAGCATTGTGAATGCCACAGACTCAAAGGGAAGAACTCCTCTCCATGCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACGAGGAGTTCTTCCCTTaGAGTCTGTGGCATTCACAA +
Preference number: 5 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYEEFFP*SLWHSQ
Trigger: TTGTGAATGCCACAGACTCAAAGGGAAGAACTCCTC...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS TCA 90 bp GACAAGAGTAGTTTGACCATCTCACCATGCCCACTGAAAGCTGCATaGTGTAATGCAGTTCTTCCTGCTCGGTCGGACACGTTCACATTG +
Preference number: 5 (lower is better)
Translates to: DKSSLTISPCPLKAA*CNAVLPARSDTFTL
Trigger: CAATGTGAACGTGTCCGACCGAGCAGGAAGAACTGCATTACATCATGCAGCTTTCAGTGGGCATGGTGAGATGGTCAAACTACTCTTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
ENSMUST00000228037.2
CDS TCA 90 bp TTCACTTGCAATCAGTTGAAGACACAGACGGTGACCATACGCAGCTaGGTAGTGAACTGCATTATAGCCTTGTTTGTCCCGGATCCCTGG +
Preference number: 5 (lower is better)
Translates to: FTCNQLKTQTVTIRS*VVNCIIALFVPDPW
Trigger: CCAGGGATCCGGGACAAACAAGGCTATAATGCAGTTCACTACTCAGCTGCGTATGGTCACCGTCTGTGTCTTCAACTGATTGCAAGTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CAGTCTTCAATTTGGCAGGCAAGCTCTGACAGTAAGAAGCTGCACACCCGCTACCTCAACTGTATTGGTTaGTCCGTTTTCTGCAGCCAT +
Preference number: 5 (lower is better)
Translates to: QSSIWQASSDSKKLHTRYLNCIG*SVFCSH
Trigger: ATGGCTGCAGAAAACGGACAAACCAATACAGTTGAG...GTAGCGGGTGTGCAGCTTCTTACTGTCAGAGCTTGCCTGCCAAATTGAAGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS CCA 90 bp CATGGAGAGGAGTTCTTCCCTTTGAGTCTGTGGCATTCACAATGCTaGCTCCTAAGGAATCAATCAGCATCTCAGCTGCACCTTCATTGT +
Preference number: 5 (lower is better)
Translates to: HGEEFFPLSLWHSQC*LLRNQSASQLHLHC
Trigger: ACAATGAAGGTGCAGCTGAGATGCTGATTGATTCCTTAGGAGCCAGCATTGTGAATGCCACAGACTCAAAGGGAAGAACTCCTCTCCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GGGATAGTACTTCAAAATTTCCCTCTTCCAGTGCACACCAAAGGAAGTGGGTTGTCCCGGATCCCTGGGTaGGCATCATTTCTTAGTAAG +
Preference number: 5 (lower is better)
Translates to: GIVLQNFPLPVHTKGSGLSRIPG*ASFLSK
Trigger: CTTACTAAGAAATGATGCCAACCCAGGGATCCGGGA...CAACCCACTTCCTTTGGTGTGCACTGGAAGAGGGAAATTTTGAAGTACTATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACAACATGCAGAGGTGTTaGCAAGGCTGCGTTGGTTGC +
Preference number: 5 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHNMQRC*QGCVGC
Trigger: GCAACCAACGCAGCCTTGCAAACACCTCTGCATGTT...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 90 bp AGCACTGCTAACCAGCATCTCAACTGTATTGGTTTGTCCGTTTTCTaGAGCCATCATGAGAGGTGTTTTTCCGGTAGAGTCTGCGGAATT +
Preference number: 5 (lower is better)
Translates to: STANQHLNCIGLSVF*SHHERCFSGRVCGI
Trigger: AATTCCGCAGACTCTACCGGAAAAACACCTCTCATGATGGCTGCAGAAAACGGACAAACCAATACAGTTGAGATGCTGGTTAGCAGTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CCA 90 bp AGTAGTGAACTGCATTATAGCCTTGTTTGTCCCGGATCCCTGGGTTaGCATCATTTCTTAGTAAGTATTCCAGGCACTTGCCGTCTGTGT +
Preference number: 5 (lower is better)
Translates to: SSELHYSLVCPGSLG*HHFLVSIPGTCRLC
Trigger: ACACAGACGGCAAGTGCCTGGAATACTTACTAAGAAATGATGCCAACCCAGGGATCCGGGACAAACAAGGCTATAATGCAGTTCACTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTTCGGACACGTTCACATaGCTCAGAAGAGGTACCAAA +
Preference number: 5 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTSDTFT*LRRGTK
Trigger: TTTGGTACCTCTTCTGAGCAATGTGAACGTGTCCGA...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTATGCTGCCCAATGGATaGCACGCCTATCTTTCTTGT +
Preference number: 5 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTMLPNG*HAYLSC
Trigger: ACAAGAAAGATAGGCGTGCAATCCATTGGGCAGCAT...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACCATGTATACCACGCTTaGCAGTGTCAGCACCACTTG +
Preference number: 5 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHHVYHA*QCQHHL
Trigger: CAAGTGGTGCTGACACTGCAAAGCGTGGTATACATG...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACAACTGCATTATAGCCTaGTTTGTCCCGGATCCCTGG +
Preference number: 5 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHNCIIA*FVPDPW
Trigger: CCAGGGATCCGGGACAAACAAGGCTATAATGCAGTT...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GCTCGTGAGGTAGTCACTGGAAGTGTTCAAGGTGGAAAGACAACCTTGGAGAAGAGCATCTCAACTGTATaGGTTTGTCCGTTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: AREVVTGSVQGGKTTLEKSISTV*VCPFSA
Trigger: TGCAGAAAACGGACAAACCAATACAGTTGAGATGCT...CTTCTCCAAGGTTGTCTTTCCACCTTGAACACTTCCAGTGACTACCTCACGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGTCAGCCACATCCTTATaGGGAGCACAGGCCAAAGCT +
Preference number: 5 (lower is better)
Translates to: LQVESVYDKKVPFSRKSPSATSL*GAQAKA
Trigger: AGCTTTGGCCTGTGCTCCCAATAAGGATGTGGCTGA...CGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp AAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTAGAGCTGCAGCTCACATGTCAATGGGCTACTaGACGAGACAGGCATCATGG +
Preference number: 5 (lower is better)
Translates to: KKPDLKFQCQNFLRAAAHMSMGY*TRQASW
Trigger: CCATGATGCCTGTCTCGTCAAGTAGCCCATTGACAT...GTGAGCTGCAGCTCTAAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGTCGGAGTCAGAGTCGTaGAGCTCATCCACGTCGGTG +
Preference number: 5 (lower is better)
Translates to: YTFDFNRCADNVSNESIWSESES*SSSTSV
Trigger: CACCGACGTGGATGAGCTCAACGACTCTGACTCCGA...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS GCA 90 bp CATGATGTAATGCAGTTCTTCCTGCTCGGTCGGACACGTTCACATTaGTCAGAAGAGGTACCAAAGATTCAGCGCACTTTACAGCTTTAT +
Preference number: 5 (lower is better)
Translates to: HDVMQFFLLGRTRSH*SEEVPKIQRTLQLY
Trigger: ATAAAGCTGTAAAGTGCGCTGAATCTTTGGTACCTCTTCTGAGCAATGTGAACGTGTCCGACCGAGCAGGAAGAACTGCATTACATCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
ENSMUST00000228037.2
CDS GCA 90 bp TCTACATTTGCTCCTTTGTTCAGTAGTGAGTATACACAGTCCGTGTaGCCATTGAGAACCGACAGCATAAGAGGTGTCTGTCCATTTCCA +
Preference number: 5 (lower is better)
Translates to: STFAPLFSSEYTQSV*PLRTDSIRGVCPFP
Trigger: TGGAAATGGACAGACACCTCTTATGCTGTCGGTTCTCAATGGGCACACGGACTGTGTATACTCACTACTGAACAAAGGAGCAAATGTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp AACGTATGGCGCTATGCTGTGCTCCTGTATTTATTCCAAATACTGGTGTTAGTCACAGTGCTCCATGTGTaGATGCAGCAGCAAAGTGCA +
Preference number: 5 (lower is better)
Translates to: NVWRYAVLLYLFQILVLVTVLHV*MQQQSA
Trigger: TGCACTTTGCTGCTGCATCAACACATGGAGCACTGT...GACTAACACCAGTATTTGGAATAAATACAGGAGCACAGCATAGCGCCATACGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GCTCGTGAGGTAGTCACTGGAAGTGTTCAAGGTGGAAAGACAACCTTGGAGAAGTCTTTACTCTTCATATaGACATCAGCTCCATTGCCA +
Preference number: 5 (lower is better)
Translates to: AREVVTGSVQGGKTTLEKSLLFI*TSAPLP
Trigger: TGGCAATGGAGCTGATGTCAATATGAAGAGTAAAGA...CTTCTCCAAGGTTGTCTTTCCACCTTGAACACTTCCAGTGACTACCTCACGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTAACATGCAGAGGTGTTaGCAAGGCTGCGTTGGTTGC +
Preference number: 5 (lower is better)
Translates to: QVESVYDKKVPFSRKSPINMQRC*QGCVGC
Trigger: GCAACCAACGCAGCCTTGCAAACACCTCTGCATGTT...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATGTCAATGGGCTACTaGACGAGACAGGCATCATGG +
Preference number: 5 (lower is better)
Translates to: LQVESVYDKKVPFSRKSPMSMGY*TRQASW
Trigger: CCATGATGCCTGTCTCGTCAAGTAGCCCATTGACAT...CGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp AGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCAGTGTCAGAACTTCCTTATGTCAATGGGCTACTaGACGAGACAGGCATCATGG +
Preference number: 5 (lower is better)
Translates to: SAFFPKKPDLKFQCQNFLMSMGY*TRQASW
Trigger: CCATGATGCCTGTCTCGTCAAGTAGCCCATTGACAT...AAGGAAGTTCTGACACTGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTTTGACATCAGCTCCATaGCCAACCAGAAGTTCTAAA +
Preference number: 5 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTLTSAP*PTRSSK
Trigger: TTTAGAACTTCTGGTTGGCAATGGAGCTGATGTCAA...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAATCGGAGTCAGAGTCGTaGAGCTCATCCACGTCGGTG +
Preference number: 5 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKSESES*SSSTSV
Trigger: CACCGACGTGGATGAGCTCAACGACTCTGACTCCGA...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 90 bp ATAAGAGTGTTGATTAGAAGCTCATGGCCATACCGGGCTGCTATATaGAAAGGGGTGTTCCCATTCTTATCTTCACAGTCTATTACAGCT +
Preference number: 5 (lower is better)
Translates to: IRVLIRSSWPYRAAI*KGVFPFLSSQSITA
Trigger: AGCTGTAATAGACTGTGAAGATAAGAATGGGAACACCCCTTTGCATATAGCAGCCCGGTATGGCCATGAGCTTCTAATCAACACTCTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGACTGGACAAGAGTAGTTaGACCATCTCACCATGCCCA +
Preference number: 5 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGLDKSS*TISPCP
Trigger: TGGGCATGGTGAGATGGTCAAACTACTCTTGTCCAG...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTTCAAAAGCATTTATATaGGCACCTCTGGACAAGAGT +
Preference number: 5 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTSKAFI*APLDKS
Trigger: ACTCTTGTCCAGAGGTGCCAATATAAATGCTTTTGA...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GGGAGCAGTGTCCCAATTTCTGGCACTGCAAAGCCAATTAAACGATCCCACAAATGTTTCCATAGGCATTaGGTTCATTCATATCAACTC +
Preference number: 5 (lower is better)
Translates to: GSSVPISGTAKPIKRSHKCFHRH*VHSYQL
Trigger: GAGTTGATATGAATGAACCAAATGCCTATGGAAACA...TTTGTGGGATCGTTTAATTGGCTTTGCAGTGCCAGAAATTGGGACACTGCTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGCAAGGTCATTCACACTaGCTCCTGATCCCACAAGAG +
Preference number: 5 (lower is better)
Translates to: YTFDFNRCADNVSNESIWQGHSH*LLIPQE
Trigger: CTCTTGTGGGATCAGGAGCAAGTGTGAATGACCTTG...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTCAAGGTCATTCACACTaGCTCCTGATCCCACAAGAG +
Preference number: 5 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFQGHSH*LLIPQE
Trigger: CTCTTGTGGGATCAGGAGCAAGTGTGAATGACCTTG...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCACAAGGTCATTCACACTaGCTCCTGATCCCACAAGAG +
Preference number: 5 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSQGHSH*LLIPQE
Trigger: CTCTTGTGGGATCAGGAGCAAGTGTGAATGACCTTG...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCATCCCGGATCCCTGGGTaGGCATCATTTCTTAGTAAG +
Preference number: 5 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSSRIPG*ASFLSK
Trigger: CTTACTAAGAAATGATGCCAACCCAGGGATCCGGGA...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ATGCATATTTACCCTTCTCCCACTATTAATTACGAAGGGTTCATTACGACTCCTAACTGCATTATAGCCTaGTTTGTCCCGGATCCCTGG +
Preference number: 5 (lower is better)
Translates to: MHIYPSPTINYEGFITTPNCIIA*FVPDPW
Trigger: CCAGGGATCCGGGACAAACAAGGCTATAATGCAGTT...AGGAGTCGTAATGAACCCTTCGTAATTAATAGTGGGAGAAGGGTAAATATGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGATTGCATCCACAGATGTaGCTGACTGCAAAAGGGCTC +
Preference number: 5 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGLHPQM*LTAKGL
Trigger: GAGCCCTTTTGCAGTCAGCAACATCTGTGGATGCAA...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTGAGGAGTTCTTCCCTTaGAGTCTGTGGCATTCACAA +
Preference number: 5 (lower is better)
Translates to: QVESVYDKKVPFSRKSPIEEFFP*SLWHSQ
Trigger: TTGTGAATGCCACAGACTCAAAGGGAAGAACTCCTC...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTTCAGCCACATCCTTATaGGGAGCACAGGCCAAAGCT +
Preference number: 5 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLSATSL*GAQAKA
Trigger: AGCTTTGGCCTGTGCTCCCAATAAGGATGTGGCTGA...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 90 bp GGCTTCATTCCTCATGATAGGCAAGGCTTCAAAGCTAACTGTTTTTaGGGTGTTGGTATAACGGTTAATGGCATTGAATGTCAGGGATGT +
Preference number: 5 (lower is better)
Translates to: GFIPHDRQGFKANCF*GVGITVNGIECQGC
Trigger: ACATCCCTGACATTCAATGCCATTAACCGTTATACCAACACCTCAAAAACAGTTAGCTTTGAAGCCTTGCCTATCATGAGGAATGAAGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGTCGGACACGTTCACATaGCTCAGAAGAGGTACCAAA +
Preference number: 5 (lower is better)
Translates to: YTFDFNRCADNVSNESIWSDTFT*LRRGTK
Trigger: TTTGGTACCTCTTCTGAGCAATGTGAACGTGTCCGA...CCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTATGCTGCCCAATGGATaGCACGCCTATCTTTCTTGT +
Preference number: 5 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPMLPNG*HAYLSC
Trigger: ACAAGAAAGATAGGCGTGCAATCCATTGGGCAGCAT...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTATGCTGCCCAATGGATaGCACGCCTATCTTTCTTGT +
Preference number: 5 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFMLPNG*HAYLSC
Trigger: ACAAGAAAGATAGGCGTGCAATCCATTGGGCAGCAT...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCACAGTGCTCCATGTGTaGATGCAGCAGCAAAGTGCA +
Preference number: 5 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSTVLHV*MQQQSA
Trigger: TGCACTTTGCTGCTGCATCAACACATGGAGCACTGT...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTACAGTGCTCCATGTGTaGATGCAGCAGCAAAGTGCA +
Preference number: 5 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFTVLHV*MQQQSA
Trigger: TGCACTTTGCTGCTGCATCAACACATGGAGCACTGT...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTTCCCGGATCCCTGGGTaGGCATCATTTCTTAGTAAG +
Preference number: 5 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFSRIPG*ASFLSK
Trigger: CTTACTAAGAAATGATGCCAACCCAGGGATCCGGGA...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTAACTGCATTATAGCCTaGTTTGTCCCGGATCCCTGG +
Preference number: 5 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFNCIIA*FVPDPW
Trigger: CCAGGGATCCGGGACAAACAAGGCTATAATGCAGTT...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTAGTACAGCCAGGGCTACACATAGAGAGCCCTGTCTTAAAACAACAAACGACTGTAAAGGGCTTATTGTaGCTCTATTATCTGAATCAC +
Preference number: 5 (lower is better)
Translates to: LVQPGLHIESPVLKQQTTVKGLL*LYYLNH
Trigger: GTGATTCAGATAATAGAGCAACAATAAGCCCTTTAC...AGTCGTTTGTTGTTTTAAGACAGGGCTCTCTATGTGTAGCCCTGGCTGTACTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCAACACTTCCAGGGCTaGATGGTGACCATGATAAGC +
Preference number: 5 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFQHFQG*MVTMIS
Trigger: GCTTATCATGGTCACCATCAAGCCCTGGAAGTGTTG...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp AGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAGGAGTTCTTCCCTTaGAGTCTGTGGCATTCACAA +
Preference number: 5 (lower is better)
Translates to: RLNLCMIRKCLFPEKARFEEFFP*SLWHSQ
Trigger: TTGTGAATGCCACAGACTCAAAGGGAAGAACTCCTC...AAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GCACTGAAGTTTGCTTTAGACGACTTCTCATTTCATCTATTTCCGTTTCCACAAGTTTGCAAGGCTGCGTaGGTTGCATTGATGAGGTTT +
Preference number: 5 (lower is better)
Translates to: ALKFALDDFSFHLFPFPQVCKAA*VALMRF
Trigger: AAACCTCATCAATGCAACCAACGCAGCCTTGCAAAC...TTGTGGAAACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCGTTTGCAAGGCTGCGTaGGTTGCATTGATGAGGTTT +
Preference number: 5 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKAVCKAA*VALMRF
Trigger: AAACCTCATCAATGCAACCAACGCAGCCTTGCAAAC...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ATATTTACCCTTCTCCCACTATTAATTACGAAGGGTTCATTACGACTCCTTTATTCAGCCACATCCTTATaGGGAGCACAGGCCAAAGCT +
Preference number: 5 (lower is better)
Translates to: IFTLLPLLITKGSLRLLYSATSL*GAQAKA
Trigger: AGCTTTGGCCTGTGCTCCCAATAAGGATGTGGCTGA...ATAAAGGAGTCGTAATGAACCCTTCGTAATTAATAGTGGGAGAAGGGTAAATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS TCA 90 bp TGCATGGATAGGTGTTCTCTTCAAAACGTAATCTTTTACGAGGATTaGAGCTCCCTGATTAATGAGTACATCCACACATTCAACATGGCC +
Preference number: 5 (lower is better)
Translates to: CMDRCSLQNVIFYED*SSLINEYIHTFNMA
Trigger: GGCCATGTTGAATGTGTGGATGTACTCATTAATCAGGGAGCTTCAATCCTCGTAAAAGATTACGTTTTGAAGAGAACACCTATCCATGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 90 bp GCGCACTTTACAGCTTTATTAGCAGCAGCTATGTGTAAAGGGGTCTaGCAATTTTTATCTCGAGCATTAACATCTGCAGAATGCTTCAAA +
Preference number: 5 (lower is better)
Translates to: AHFTALLAAAMCKGV*QFLSRALTSAECFK
Trigger: TTTGAAGCATTCTGCAGATGTTAATGCTCGAGATAAAAATTGGCAGACCCCTTTACACATAGCTGCTGCTAATAAAGCTGTAAAGTGCGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
ENSMUST00000228037.2
CDS-3UTR CAA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAACAACACTTCCAGGGCTaGATGGTGACCATGATAAGC +
Preference number: 5 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKQHFQG*MVTMIS
Trigger: GCTTATCATGGTCACCATCAAGCCCTGGAAGTGTTG...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTGCTGTCCTTCCCCACTaGTCTTTGGCATCTACATTT +
Preference number: 5 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFAVLPH*SLASTF
Trigger: AAATGTAGATGCCAAAGACAAGTGGGGAAGGACAGC...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAATTGCATCCACAGATGTaGCTGACTGCAAAAGGGCTC +
Preference number: 5 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKLHPQM*LTAKGL
Trigger: GAGCCCTTTTGCAGTCAGCAACATCTGTGGATGCAA...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAATTGCATCCACAGATGTaGCTGACTGCAAAAGGGCTC +
Preference number: 5 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKLHPQM*LTAKGL
Trigger: GAGCCCTTTTGCAGTCAGCAACATCTGTGGATGCAA...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTAGCATCTCAACTGTATaGGTTTGTCCGTTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: QVESVYDKKVPFSRKSPISISTV*VCPFSA
Trigger: TGCAGAAAACGGACAAACCAATACAGTTGAGATGCT...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTGCTGCGTTGGTTGCATaGATGAGGTTTCTATCTGTT +
Preference number: 5 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPAALVA*MRFLSV
Trigger: AACAGATAGAAACCTCATCAATGCAACCAACGCAGC...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCGCTGCGTTGGTTGCATaGATGAGGTTTCTATCTGTT +
Preference number: 5 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKAAALVA*MRFLSV
Trigger: AACAGATAGAAACCTCATCAATGCAACCAACGCAGC...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTGTTTGCAAGGCTGCGTaGGTTGCATTGATGAGGTTT +
Preference number: 5 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLVCKAA*VALMRF
Trigger: AAACCTCATCAATGCAACCAACGCAGCCTTGCAAAC...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACACATTTGACTTCAATAGATGTGCAGACAATGTGTCTAATGAGTCCATCTGGAAACCATTTGCTGTCTTaGGCATTAACTCTAGCTCCA +
Preference number: 5 (lower is better)
Translates to: THLTSIDVQTMCLMSPSGNHLLS*ALTLAP
Trigger: TGGAGCTAGAGTTAATGCCAAAGACAGCAAATGGTT...TCCAGATGGACTCATTAGACACATTGTCTGCACATCTATTGAAGTCAAATGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GCACTGAAGTTTGCTTTAGACGACTTCTCATTTCATCTATTTCCGTTTCCACAAAACCATTTGCTGTCTTaGGCATTAACTCTAGCTCCA +
Preference number: 5 (lower is better)
Translates to: ALKFALDDFSFHLFPFPQNHLLS*ALTLAP
Trigger: TGGAGCTAGAGTTAATGCCAAAGACAGCAAATGGTT...TTGTGGAAACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GCACTGAAGTTTGCTTTAGACGACTTCTCATTTCATCTATTTCCGTTTCCACAACTTTGGCATCTACATTaGCTCCTTTGTTCAGTAGTG +
Preference number: 5 (lower is better)
Translates to: ALKFALDDFSFHLFPFPQLWHLH*LLCSVV
Trigger: CACTACTGAACAAAGGAGCAAATGTAGATGCCAAAG...TTGTGGAAACGGAAATAGATGAAATGAGAAGTCGTCTAAAGCAAACTTCAGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTCTTTGGCATCTACATTaGCTCCTTTGTTCAGTAGTG +
Preference number: 5 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPLWHLH*LLCSVV
Trigger: CACTACTGAACAAAGGAGCAAATGTAGATGCCAAAG...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCTTTGGCATCTACATTaGCTCCTTTGTTCAGTAGTG +
Preference number: 5 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKALWHLH*LLCSVV
Trigger: CACTACTGAACAAAGGAGCAAATGTAGATGCCAAAG...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAGCTGTCCTTCCCCACTaGTCTTTGGCATCTACATTT +
Preference number: 5 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKAVLPH*SLASTF
Trigger: AAATGTAGATGCCAAAGACAAGTGGGGAAGGACAGC...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCTGTCCTTCCCCACTaGTCTTTGGCATCTACATTT +
Preference number: 5 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKAVLPH*SLASTF
Trigger: AAATGTAGATGCCAAAGACAAGTGGGGAAGGACAGC...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTCAACTGTATTGGTTaGTCCGTTTTCTGCAGCCAT +
Preference number: 5 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFLNCIG*SVFCSH
Trigger: ATGGCTGCAGAAAACGGACAAACCAATACAGTTGAG...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTAGCATCTCAACTGTATaGGTTTGTCCGTTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPSISTV*VCPFSA
Trigger: TGCAGAAAACGGACAAACCAATACAGTTGAGATGCT...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTGCTGCGTTGGTTGCATaGATGAGGTTTCTATCTGTT +
Preference number: 5 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFAALVA*MRFLSV
Trigger: AACAGATAGAAACCTCATCAATGCAACCAACGCAGC...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCATCAAAAGCATTTATATaGGCACCTCTGGACAAGAGT +
Preference number: 5 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSSKAFI*APLDKS
Trigger: ACTCTTGTCCAGAGGTGCCAATATAAATGCTTTTGA...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTCAAAAGCATTTATATaGGCACCTCTGGACAAGAGT +
Preference number: 5 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPSKAFI*APLDKS
Trigger: ACTCTTGTCCAGAGGTGCCAATATAAATGCTTTTGA...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTTTGACATCAGCTCCATaGCCAACCAGAAGTTCTAAA +
Preference number: 5 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFLTSAP*PTRSSK
Trigger: TTTAGAACTTCTGGTTGGCAATGGAGCTGATGTCAA...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCTCTTTACTCTTCATATaGACATCAGCTCCATTGCCA +
Preference number: 5 (lower is better)
Translates to: FFRLNLCMIRKCLFPEKASLLFI*TSAPLP
Trigger: TGGCAATGGAGCTGATGTCAATATGAAGAGTAAAGA...GGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp GTTCACTGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTCTTGTAATAAGAGTGTaGATTAGAAGCTCATGGCCA +
Preference number: 5 (lower is better)
Translates to: VHCMIFLQVESVYDKKVPLVIRV*IRSSWP
Trigger: TGGCCATGAGCTTCTAATCAACACTCTTATTACAAG...AGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCAGTGAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTCTACATTTGCTCCTTaGTTCAGTAGTGAGTATACA +
Preference number: 5 (lower is better)
Translates to: QVESVYDKKVPFSRKSPISTFAP*FSSEYT
Trigger: TGTATACTCACTACTGAACAAAGGAGCAAATGTAGA...AATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ATATTTACCCTTCTCCCACTATTAATTACGAAGGGTTCATTACGACTCCTTTATCTCAACTGTATTGGTTaGTCCGTTTTCTGCAGCCAT +
Preference number: 5 (lower is better)
Translates to: IFTLLPLLITKGSLRLLYLNCIG*SVFCSH
Trigger: ATGGCTGCAGAAAACGGACAAACCAATACAGTTGAG...ATAAAGGAGTCGTAATGAACCCTTCGTAATTAATAGTGGGAGAAGGGTAAATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAATTGACATCAGCTCCATaGCCAACCAGAAGTTCTAAA +
Preference number: 5 (lower is better)
Translates to: IFLQVESVYDKKVPFSRKLTSAP*PTRSSK
Trigger: TTTAGAACTTCTGGTTGGCAATGGAGCTGATGTCAA...TTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TGCATGATCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCTCTTTACTCTTCATATaGACATCAGCTCCATTGCCA +
Preference number: 5 (lower is better)
Translates to: CMIFLQVESVYDKKVPFSSLLFI*TSAPLP
Trigger: TGGCAATGGAGCTGATGTCAATATGAAGAGTAAAGA...GGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGATCATGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAAGCCCGATTTGAAGTTTCATCTACATTTGCTCCTTaGTTCAGTAGTGAGTATACA +
Preference number: 5 (lower is better)
Translates to: LCMIRKCLFPEKARFEVSSTFAP*FSSEYT
Trigger: TGTATACTCACTACTGAACAAAGGAGCAAATGTAGA...TGAAACTTCAAATCGGGCTTTTTCGGGAAAAAGGCACTTTCTTATCATACACAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp ACTCTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTTGTTTCCATAGGCATTaGGTTCATTCATATCAACTC +
Preference number: 5 (lower is better)
Translates to: TLLPNVIMFLPFVHCMIFCFHRH*VHSYQL
Trigger: GAGTTGATATGAATGAACCAAATGCCTATGGAAACA...AAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAGAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTTGTTTCCATAGGCATTaGGTTCATTCATATCAACTC +
Preference number: 5 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLCFHRH*VHSYQL
Trigger: GAGTTGATATGAATGAACCAAATGCCTATGGAAACA...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAACTTGTAATAAGAGTGTaGATTAGAAGCTCATGGCCA +
Preference number: 5 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKLVIRV*IRSSWP
Trigger: TGGCCATGAGCTTCTAATCAACACTCTTATTACAAG...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp CTTCTTCCTAATGTCATCATGTTTCTTCCATTCGTTCACTGCATGATCTTTCTTGTAAAGGGCTTATTGTaGCTCTATTATCTGAATCAC +
Preference number: 5 (lower is better)
Translates to: LLPNVIMFLPFVHCMIFLVKGLL*LYYLNH
Trigger: GTGATTCAGATAATAGAGCAACAATAAGCCCTTTAC...AAGAAAGATCATGCAGTGAACGAATGGAAGAAACATGATGACATTAGGAAGAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS-3UTR CAA 90 bp TCTTTCTTCAGGTTGAATCTGTGTATGATAAGAAAGTGCCTTTTTCCCGAAAAATCTACATTTGCTCCTTaGTTCAGTAGTGAGTATACA +
Preference number: 5 (lower is better)
Translates to: SFFRLNLCMIRKCLFPEKSTFAP*FSSEYT
Trigger: TGTATACTCACTACTGAACAAAGGAGCAAATGTAGA...TTTTTCGGGAAAAAGGCACTTTCTTATCATACACAGATTCAACCTGAAGAAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp AAGGGCTCCAAGAACTCCAATGTGTCCACAGGCTGCTaGCAAGTGTATGGGTGTCCGACCCCGGCTGTCCCG +
Preference number: 6 (lower is better)
Translates to: KGSKNSNVSTGC*QVYGCPTPAVP
Trigger: CGGGACAGCCGGGGTCGGACACCCATACACTTGTCAGCAGCCTGTGGACACATTGGAGTTCTTGGAGCCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp ACAGCAAGCACACTGGCTCCTTTCCCCAGGAGCTCTTaGACAACCATCGTGAGCCCATTTCGGGCAGCAACA +
Preference number: 6 (lower is better)
Translates to: TASTLAPFPRSS*TTIVSPFRAAT
Trigger: TGTTGCTGCCCGAAATGGGCTCACGATGGTTGTTCAAGAGCTCCTGGGGAAAGGAGCCAGTGTGCTTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp AACAGCAAGCACACTGGCTCCTTTCCCCAGGAGCTCTaGAACAACCATCGTGAGCCCATTTCGGGCAGCAAC +
Preference number: 6 (lower is better)
Translates to: NSKHTGSFPQEL*NNHREPISGSN
Trigger: GTTGCTGCCCGAAATGGGCTCACGATGGTTGTTCAAGAGCTCCTGGGGAAAGGAGCCAGTGTGCTTGCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp TGGCTCCTTTCCCCAGGAGCTCTTGAACAACCATCGTaGGCCCATTTCGGGCAGCAACATGCAGAGGTGTTT +
Preference number: 6 (lower is better)
Translates to: WLLSPGALEQPS*AHFGQQHAEVF
Trigger: AAACACCTCTGCATGTTGCTGCCCGAAATGGGCTCACGATGGTTGTTCAAGAGCTCCTGGGGAAAGGAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 72 bp GTATTCCAGGCACTTGCCGTCTGTGTCAGATGTAGCTaGATAGTGCAGGGGTGTGCAGCCTCTCTCATCAAG +
Preference number: 6 (lower is better)
Translates to: VFQALAVCVRCS*IVQGCAASLIK
Trigger: CTTGATGAGAGAGGCTGCACACCCCTGCACTATGCAGCTACATCTGACACAGACGGCAAGTGCCTGGAATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp CCCCGGCTGTCCCGTAGTAAGCACTTAGCACCATGTTaGAGTAATGCGTCTACACACTCTTCATGGCCTGTC +
Preference number: 6 (lower is better)
Translates to: PRLSRSKHLAPC*SNASTHSSWPV
Trigger: GACAGGCCATGAAGAGTGTGTAGACGCATTACTTCAACATGGTGCTAAGTGCTTACTACGGGACAGCCGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 72 bp TGCAGCCATCATGAGAGGTGTTTTTCCGGTAGAGTCTaGGGAATTGACCTGAGCATTCTGGCTGAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: CSHHERCFSGRV*GIDLSILAEQQ
Trigger: CTGCTGCTCAGCCAGAATGCTCAGGTCAATTCCGCAGACTCTACCGGAAAAACACCTCTCATGATGGCTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CCA 72 bp GTCAGCCACATCCTTATTGGGAGCACAGGCCAAAGCTaGGGTGTAGCCATTCTCATCAACAGCAAGCACACT +
Preference number: 6 (lower is better)
Translates to: VSHILIGSTGQS*GVAILINSKHT
Trigger: AGTGTGCTTGCTGTTGATGAGAATGGCTACACCCCAGCTTTGGCCTGTGCTCCCAATAAGGATGTGGCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp AGTTTGACCATCTCACCATGCCCACTGAAAGCTGCATaGTGTAATGCAGTTCTTCCTGCTCGGTCGGACACG +
Preference number: 6 (lower is better)
Translates to: SLTISPCPLKAA*CNAVLPARSDT
Trigger: CGTGTCCGACCGAGCAGGAAGAACTGCATTACATCATGCAGCTTTCAGTGGGCATGGTGAGATGGTCAAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
ENSMUST00000228037.2
CDS CCA 72 bp TGTAAACACTCCACATGGTCTGTGAAGGCAGCGGCATaGAGAGGAGTTCTTCCCTTTGAGTCTGTGGCATTC +
Preference number: 6 (lower is better)
Translates to: CKHSTWSVKAAA*RGVLPFESVAF
Trigger: GAATGCCACAGACTCAAAGGGAAGAACTCCTCTCCATGCCGCTGCCTTCACAGACCATGTGGAGTGTTTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp GTCACTGCCCCTCTGTGCAACGCTGTCCTTCCCCACTaGTCTTTGGCATCTACATTTGCTCCTTTGTTCAGT +
Preference number: 6 (lower is better)
Translates to: VTAPLCNAVLPH*SLASTFAPLFS
Trigger: ACTGAACAAAGGAGCAAATGTAGATGCCAAAGACAAGTGGGGAAGGACAGCGTTGCACAGAGGGGCAGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 90 bp TCATGGCCTGTCACTGCCCCTCTGTGCAACGCTGTCCTTCCCCACTaGTCTTTGGCATCTACATTTGCTCCTTTGTTCAGTAGTGAGTAT +
Preference number: 6 (lower is better)
Translates to: SWPVTAPLCNAVLPH*SLASTFAPLFSSEY
Trigger: ATACTCACTACTGAACAAAGGAGCAAATGTAGATGCCAAAGACAAGTGGGGAAGGACAGCGTTGCACAGAGGGGCAGTGACAGGCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp GTCTACTACGGCTGGATTTGCATCCACAGATGTTGCTaGCTGCAAAAGGGCTCCAAGAACTCCAATGTGTCC +
Preference number: 6 (lower is better)
Translates to: VYYGWICIHRCC*LQKGSKNSNVS
Trigger: GGACACATTGGAGTTCTTGGAGCCCTTTTGCAGTCAGCAACATCTGTGGATGCAAATCCAGCCGTAGTAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp AGAGGTGTTTTTCCGGTAGAGTCTGCGGAATTGACCTaGGCATTCTGGCTGAGCAGCAGTTGTAAACACTCC +
Preference number: 6 (lower is better)
Translates to: RGVFPVESAELT*AFWLSSSCKHS
Trigger: GGAGTGTTTACAACTGCTGCTCAGCCAGAATGCTCAGGTCAATTCCGCAGACTCTACCGGAAAAACACCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 72 bp GCTCGGACTTCATCTGGATCACCATTAAATATAGCTTaGACCAGTGATGGCTGGTCGCGGAGTTTGAGGAAC +
Preference number: 6 (lower is better)
Translates to: ARTSSGSPLNIA*TSDGWSRSLRN
Trigger: GTTCCTCAAACTCCGCGACCAGCCATCACTGGTGCAAGCTATATTTAATGGTGATCCAGATGAAGTCCGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014640.9
CDS GCA 72 bp ACTACGGCTGGATTTGCATCCACAGATGTTGCTGACTaGAAAAGGGCTCCAAGAACTCCAATGTGTCCACAG +
Preference number: 6 (lower is better)
Translates to: TTAGFASTDVAD*KRAPRTPMCPQ
Trigger: CTGTGGACACATTGGAGTTCTTGGAGCCCTTTTGCAGTCAGCAACATCTGTGGATGCAAATCCAGCCGTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 90 bp CTCTGTGCAACGCTGTCCTTCCCCACTTGTCTTTGGCATCTACATTaGCTCCTTTGTTCAGTAGTGAGTATACACAGTCCGTGTGCCCAT +
Preference number: 6 (lower is better)
Translates to: LCATLSFPTCLWHLH*LLCSVVSIHSPCAH
Trigger: ATGGGCACACGGACTGTGTATACTCACTACTGAACAAAGGAGCAAATGTAGATGCCAAAGACAAGTGGGGAAGGACAGCGTTGCACAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 72 bp ATGCAGTTCTTCCTGCTCGGTCGGACACGTTCACATTaGTCAGAAGAGGTACCAAAGATTCAGCGCACTTTA +
Preference number: 6 (lower is better)
Translates to: MQFFLLGRTRSH*SEEVPKIQRTL
Trigger: TAAAGTGCGCTGAATCTTTGGTACCTCTTCTGAGCAATGTGAACGTGTCCGACCGAGCAGGAAGAACTGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
ENSMUST00000228037.2
CDS GCA 72 bp GCTCCTTTGTTCAGTAGTGAGTATACACAGTCCGTGTaGCCATTGAGAACCGACAGCATAAGAGGTGTCTGT +
Preference number: 6 (lower is better)
Translates to: APLFSSEYTQSV*PLRTDSIRGVC
Trigger: ACAGACACCTCTTATGCTGTCGGTTCTCAATGGGCACACGGACTGTGTATACTCACTACTGAACAAAGGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 72 bp TCAGCTGCACCTTCATTGTCGTTGATCACGGCACAATaGAGGGGGCTGAAAGCATTTCCATCTATTTTCTGG +
Preference number: 6 (lower is better)
Translates to: SAAPSLSLITAQ*RGLKAFPSIFW
Trigger: CCAGAAAATAGATGGAAATGCTTTCAGCCCCCTGCATTGTGCCGTGATCAACGACAATGAAGGTGCAGCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp AATGCAGTTCTTCCTGCTCGGTCGGACACGTTCACATaGCTCAGAAGAGGTACCAAAGATTCAGCGCACTTT +
Preference number: 6 (lower is better)
Translates to: NAVLPARSDTFT*LRRGTKDSAHF
Trigger: AAAGTGCGCTGAATCTTTGGTACCTCTTCTGAGCAATGTGAACGTGTCCGACCGAGCAGGAAGAACTGCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
ENSMUST00000228037.2
CDS CAA 72 bp GAATCAATCAGCATCTCAGCTGCACCTTCATTGTCGTaGATCACGGCACAATGCAGGGGGCTGAAAGCATTT +
Preference number: 6 (lower is better)
Translates to: ESISISAAPSLS*ITAQCRGLKAF
Trigger: AAATGCTTTCAGCCCCCTGCATTGTGCCGTGATCAACGACAATGAAGGTGCAGCTGAGATGCTGATTGATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 90 bp AACGCTGTCCTTCCCCACTTGTCTTTGGCATCTACATTTGCTCCTTaGTTCAGTAGTGAGTATACACAGTCCGTGTGCCCATTGAGAACC +
Preference number: 6 (lower is better)
Translates to: NAVLPHLSLASTFAP*FSSEYTQSVCPLRT
Trigger: GGTTCTCAATGGGCACACGGACTGTGTATACTCACTACTGAACAAAGGAGCAAATGTAGATGCCAAAGACAAGTGGGGAAGGACAGCGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 90 bp TATACCCATGATTGTCTACTACGGCTGGATTTGCATCCACAGATGTaGCTGACTGCAAAAGGGCTCCAAGAACTCCAATGTGTCCACAGG +
Preference number: 6 (lower is better)
Translates to: YTHDCLLRLDLHPQM*LTAKGLQELQCVHR
Trigger: CCTGTGGACACATTGGAGTTCTTGGAGCCCTTTTGCAGTCAGCAACATCTGTGGATGCAAATCCAGCCGTAGTAGACAATCATGGGTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 90 bp GCTCCTAAGGAATCAATCAGCATCTCAGCTGCACCTTCATTGTCGTaGATCACGGCACAATGCAGGGGGCTGAAAGCATTTCCATCTATT +
Preference number: 6 (lower is better)
Translates to: APKESISISAAPSLS*ITAQCRGLKAFPSI
Trigger: AATAGATGGAAATGCTTTCAGCCCCCTGCATTGTGCCGTGATCAACGACAATGAAGGTGCAGCTGAGATGCTGATTGATTCCTTAGGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp AATCAGTTGAAGACACAGACGGTGACCATACGCAGCTaGGTAGTGAACTGCATTATAGCCTTGTTTGTCCCG +
Preference number: 6 (lower is better)
Translates to: NQLKTQTVTIRS*VVNCIIALFVP
Trigger: CGGGACAAACAAGGCTATAATGCAGTTCACTACTCAGCTGCGTATGGTCACCGTCTGTGTCTTCAACTGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CCA 72 bp CTCTGGATAATCGTTTGTGATCTGGAGAATCTACCGTaGAGGGCAGTCATATGTAGTGGGGTTTTCCCATCT +
Preference number: 6 (lower is better)
Translates to: LWIIVCDLENLP*RAVICSGVFPS
Trigger: AGATGGGAAAACCCCACTACATATGACTGCCCTCCACGGTAGATTCTCCAGATCACAAACGATTATCCAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
ENSMUST00000227878.2
CDS CAA 72 bp CTTCCCCACTTGTCTTTGGCATCTACATTTGCTCCTTaGTTCAGTAGTGAGTATACACAGTCCGTGTGCCCA +
Preference number: 6 (lower is better)
Translates to: LPHLSLASTFAP*FSSEYTQSVCP
Trigger: TGGGCACACGGACTGTGTATACTCACTACTGAACAAAGGAGCAAATGTAGATGCCAAAGACAAGTGGGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp ACGCTGTCCTTCCCCACTTGTCTTTGGCATCTACATTaGCTCCTTTGTTCAGTAGTGAGTATACACAGTCCG +
Preference number: 6 (lower is better)
Translates to: TLSFPTCLWHLH*LLCSVVSIHSP
Trigger: CGGACTGTGTATACTCACTACTGAACAAAGGAGCAAATGTAGATGCCAAAGACAAGTGGGGAAGGACAGCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp GATTGTCTACTACGGCTGGATTTGCATCCACAGATGTaGCTGACTGCAAAAGGGCTCCAAGAACTCCAATGT +
Preference number: 6 (lower is better)
Translates to: DCLLRLDLHPQM*LTAKGLQELQC
Trigger: ACATTGGAGTTCTTGGAGCCCTTTTGCAGTCAGCAACATCTGTGGATGCAAATCCAGCCGTAGTAGACAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp CGGGCAGCAACATGCAGAGGTGTTTGCAAGGCTGCGTaGGTTGCATTGATGAGGTTTCTATCTGTTATCTTT +
Preference number: 6 (lower is better)
Translates to: RAATCRGVCKAA*VALMRFLSVIF
Trigger: AAAGATAACAGATAGAAACCTCATCAATGCAACCAACGCAGCCTTGCAAACACCTCTGCATGTTGCTGCCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp ACAGTCTATTACAGCTCCACTCTGGATAATCGTTTGTaGTCTGGAGAATCTACCGTGGAGGGCAGTCATATG +
Preference number: 6 (lower is better)
Translates to: TVYYSSTLDNRL*SGESTVEGSHM
Trigger: CATATGACTGCCCTCCACGGTAGATTCTCCAGATCACAAACGATTATCCAGAGTGGAGCTGTAATAGACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 72 bp TTGATTAGAAGCTCATGGCCATACCGGGCTGCTATATaGAAAGGGGTGTTCCCATTCTTATCTTCACAGTCT +
Preference number: 6 (lower is better)
Translates to: LIRSSWPYRAAI*KGVFPFLSSQS
Trigger: AGACTGTGAAGATAAGAATGGGAACACCCCTTTGCATATAGCAGCCCGGTATGGCCATGAGCTTCTAATCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS GCA 72 bp AACCAGCATCTCAACTGTATTGGTTTGTCCGTTTTCTaGAGCCATCATGAGAGGTGTTTTTCCGGTAGAGTC +
Preference number: 6 (lower is better)
Translates to: NQHLNCIGLSVF*SHHERCFSGRV
Trigger: GACTCTACCGGAAAAACACCTCTCATGATGGCTGCAGAAAACGGACAAACCAATACAGTTGAGATGCTGGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 90 bp GGGCTTGATGGTGACCATGATAAGCAGCCAAATGTAAAGGGCTTATaGTTGCTCTATTATCTGAATCACTCAACATGTCTGTTCCCGAGG +
Preference number: 6 (lower is better)
Translates to: GLDGDHDKQPNVKGL*LLYYLNHSTCLFPR
Trigger: CCTCGGGAACAGACATGTTGAGTGATTCAGATAATAGAGCAACAATAAGCCCTTTACATTTGGCTGCTTATCATGGTCACCATCAAGCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp AGCACCACAGTCTATGAGCTCATTCACAACAACATCTaGTCCATTGTAACAGGCCACATGAAGAGGTGTGTT +
Preference number: 6 (lower is better)
Translates to: STTVYELIHNNI*SIVTGHMKRCV
Trigger: AACACACCTCTTCATGTGGCCTGTTACAATGGACAAGATGTTGTTGTGAATGAGCTCATAGACTGTGGTGCT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp ACTAGCACTGCTAACCAGCATCTCAACTGTATTGGTTaGTCCGTTTTCTGCAGCCATCATGAGAGGTGTTTT +
Preference number: 6 (lower is better)
Translates to: TSTANQHLNCIG*SVFCSHHERCF
Trigger: AAAACACCTCTCATGATGGCTGCAGAAAACGGACAAACCAATACAGTTGAGATGCTGGTTAGCAGTGCTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 90 bp TCCTCACTACACGATGCAACTGCTCTGTGTAAAGGTGTCAACCATTaGCTGTCTTTGGCATTAACTCTAGCTCCAGATAAAATAAGCAGC +
Preference number: 6 (lower is better)
Translates to: SSLHDATALCKGVNH*LSLALTLAPDKISS
Trigger: GCTGCTTATTTTATCTGGAGCTAGAGTTAATGCCAAAGACAGCAAATGGTTGACACCTTTACACAGAGCAGTTGCATCGTGTAGTGAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
ENSMUST00000228037.2
CDS CAA 90 bp ATTGACATTAGCACCACAGTCTATGAGCTCATTCACAACAACATCTaGTCCATTGTAACAGGCCACATGAAGAGGTGTGTTTCCATAGGC +
Preference number: 6 (lower is better)
Translates to: IDISTTVYELIHNNI*SIVTGHMKRCVSIG
Trigger: GCCTATGGAAACACACCTCTTCATGTGGCCTGTTACAATGGACAAGATGTTGTTGTGAATGAGCTCATAGACTGTGGTGCTAATGTCAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp ACTGCTCTGTGTAAAGGTGTCAACCATTTGCTGTCTTaGGCATTAACTCTAGCTCCAGATAAAATAAGCAGC +
Preference number: 6 (lower is better)
Translates to: TALCKGVNHLLS*ALTLAPDKISS
Trigger: GCTGCTTATTTTATCTGGAGCTAGAGTTAATGCCAAAGACAGCAAATGGTTGACACCTTTACACAGAGCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227863.2
ENSMUST00000228037.2
CDS TCA 72 bp CCTCATGATAGGCAAGGCTTCAAAGCTAACTGTTTTTaGGGTGTTGGTATAACGGTTAATGGCATTGAATGT +
Preference number: 6 (lower is better)
Translates to: PHDRQGFKANCF*GVGITVNGIEC
Trigger: ACATTCAATGCCATTAACCGTTATACCAACACCTCAAAAACAGTTAGCTTTGAAGCCTTGCCTATCATGAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp AACAGGCCACATGAAGAGGTGTGTTTCCATAGGCATTaGGTTCATTCATATCAACTCCAAGATCTAGAAGAT +
Preference number: 6 (lower is better)
Translates to: NRPHEEVCFHRH*VHSYQLQDLED
Trigger: ATCTTCTAGATCTTGGAGTTGATATGAATGAACCAAATGCCTATGGAAACACACCTCTTCATGTGGCCTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS CAA 72 bp GGTGACCATGATAAGCAGCCAAATGTAAAGGGCTTATaGTTGCTCTATTATCTGAATCACTCAACATGTCTG +
Preference number: 6 (lower is better)
Translates to: GDHDKQPNVKGL*LLYYLNHSTCL
Trigger: CAGACATGTTGAGTGATTCAGATAATAGAGCAACAATAAGCCCTTTACATTTGGCTGCTTATCATGGTCACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2
CDS TCA 72 bp AGGTGTTCTCTTCAAAACGTAATCTTTTACGAGGATTaGAGCTCCCTGATTAATGAGTACATCCACACATTC +
Preference number: 6 (lower is better)
Translates to: RCSLQNVIFYED*SSLINEYIHTF
Trigger: GAATGTGTGGATGTACTCATTAATCAGGGAGCTTCAATCCTCGTAAAAGATTACGTTTTGAAGAGAACACCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000014640.9
ENSMUST00000227089.2
ENSMUST00000227863.2