RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANKFY1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020790

Ensembl transcript IDs: ENSMUST00000127610.8, ENSMUST00000155998.2

Found 436 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCGGTGAGCAGAGCAGCTGCTGGGGAGGTGCCAGGGATGCAGGCCTaGGTCCTCCTGGGGGCCTCACTAAGAGACTCCACCCAGAGTCAG +
Preference number: 1 (lower is better)
Translates to: PVSRAAAGEVPGMQA*VLLGASLRDSTQSQ
Trigger: CTGACTCTGGGTGGAGTCTCTTAGTGAGGCCCCCAGGAGGACCCAGGCCTGCATCCCTGGCACCTCCCCAGCAGCTGCTCTGCTCACCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 90 bp AGCCACCGCCCTAGAGTGACCAGCGCTCATCCAGCAGCCGCTCTCTaGTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTT +
Preference number: 1 (lower is better)
Translates to: SHRPRVTSAHPAAAL*SEGSVLSQPRQGDF
Trigger: AAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAGAGCGGCTGCTGGATGAGCGCTGGTCACTCTAGGGCGGTGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 90 bp CCACAGCAGCGAAGTCCACTCCATTCTCTAGGAGGACTGAGCAGATaGTGGGCAGGTCCTGCTGTGCAGCGAGATGGAGAGCGGTCTGAC +
Preference number: 1 (lower is better)
Translates to: PQQRSPLHSLGGLSR*WAGPAVQRDGERSD
Trigger: GTCAGACCGCTCTCCATCTCGCTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCCTAGAGAATGGAGTGGACTTCGCTGCTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp GGGCAGTGTACAGCAGGAGGGCAGCACAGTGAGCATGGCATGGTCTaGGGGATTGCGGCTGTGGAAGAAAGCCTGAGCCACATCTACAGC +
Preference number: 1 (lower is better)
Translates to: GQCTAGGQHSEHGMV*GIAAVEESLSHIYS
Trigger: GCTGTAGATGTGGCTCAGGCTTTCTTCCACAGCCGCAATCCCCCAGACCATGCCATGCTCACTGTGCTGCCCTCCTGCTGTACACTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 90 bp ATAGTGAGCATAGCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTaGGCTGGCAGGGGAGCTCTGGAGCTTCAGGTGGCTCTAGGGGCT +
Preference number: 1 (lower is better)
Translates to: IVSIAQRPLLSCFLC*AGRGALELQVALGA
Trigger: AGCCCCTAGAGCCACCTGAAGCTCCAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGCTATGCTCACTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 90 bp GCTGTCCTGCCGCTGTATGGCCATGTGCAGCAATGTCTGTCCATCTaGCATGGTGTCATTGATAGAGGCTCCGGAGCCCAGCAGCTGGGC +
Preference number: 1 (lower is better)
Translates to: AVLPLYGHVQQCLSI*HGVIDRGSGAQQLG
Trigger: GCCCAGCTGCTGGGCTCCGGAGCCTCTATCAATGACACCATGTCAGATGGACAGACATTGCTGCACATGGCCATACAGCGGCAGGACAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 90 bp ACCGGCAGAGCCTCCTCTGTCTGTAAGTTTGGATTGGCACCTTGCTaGAGGAGCTCTGCTGTGAGGTTGGCCAGGCCATGCCGACAAGCT +
Preference number: 1 (lower is better)
Translates to: TGRASSVCKFGLAPC*RSSAVRLARPCRQA
Trigger: AGCTTGTCGGCATGGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGACAGAGGAGGCTCTGCCGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 90 bp AACAATCAGGGATCACGCCATGGTCTTCTGCCGCAGGAAGACAACTaGCAGCTCTTGCTCTGGGTAGGAGGCAGGCCGGTGAGCAGAGCA +
Preference number: 1 (lower is better)
Translates to: NNQGSRHGLLPQEDN*QLLLWVGGRPVSRA
Trigger: TGCTCTGCTCACCGGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGACCATGGCGTGATCCCTGATTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR GCA 90 bp TGTATAGTGAGCATAGCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTaGTGGGCTGGCAGGGGAGCTCTGGAGCTTCAGGTGGCTCTAGGG +
Preference number: 1 (lower is better)
Translates to: CIVSIAQRPLLSCFL*WAGRGALELQVALG
Trigger: CCCTAGAGCCACCTGAAGCTCCAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGCTATGCTCACTATACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 90 bp CAGCAGCGAAGTCCACTCCATTCTCTAGGAGGACTGAGCAGATGGTaGGCAGGTCCTGCTGTGCAGCGAGATGGAGAGCGGTCTGACGAT +
Preference number: 1 (lower is better)
Translates to: QQRSPLHSLGGLSRW*AGPAVQRDGERSDD
Trigger: ATCGTCAGACCGCTCTCCATCTCGCTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCCTAGAGAATGGAGTGGACTTCGCTGCTG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp CCATCTGACATGGTGTCATTGATAGAGGCTCCGGAGCCCAGCAGCTaGGCAGCGATTGTGTGCATGCCAGTCCATAATGCCAGGCCGAGA +
Preference number: 1 (lower is better)
Translates to: PSDMVSLIEAPEPSS*AAIVCMPVHNARPR
Trigger: TCTCGGCCTGGCATTATGGACTGGCATGCACACAATCGCTGCCCAGCTGCTGGGCTCCGGAGCCTCTATCAATGACACCATGTCAGATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp CAGATGGTGGGCAGGTCCTGCTGTGCAGCGAGATGGAGAGCGGTCTaGCGATGCTTGGTTAACTCATTCACCTTGGCTCCTGCAAGAAGC +
Preference number: 1 (lower is better)
Translates to: QMVGRSCCAARWRAV*RCLVNSFTLAPARS
Trigger: GCTTCTTGCAGGAGCCAAGGTGAATGAGTTAACCAAGCATCGTCAGACCGCTCTCCATCTCGCTGCACAGCAGGACCTGCCCACCATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 90 bp AGTTTCTCCCCATTTGTTCCTGTGGTTGGCATGGGCACCACTAGTTaGCAGGAAGAGAGCAGCAGCCTCATTTCCAGCCCCAGCTGCCCT +
Preference number: 1 (lower is better)
Translates to: SFSPFVPVVGMGTTS*QEESSSLISSPSCP
Trigger: AGGGCAGCTGGGGCTGGAAATGAGGCTGCTGCTCTCTTCCTGGCAACTAGTGGTGCCCATGCCAACCACAGGAACAAATGGGGAGAAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 90 bp TTGGCACCTTGCTGCAGGAGCTCTGCTGTGAGGTTGGCCAGGCCATaGCGACAAGCTGTATGCAAAGGAGTTTCTCCCCATTTGTTCCTG +
Preference number: 1 (lower is better)
Translates to: LAPCCRSSAVRLARP*RQAVCKGVSPHLFL
Trigger: CAGGAACAAATGGGGAGAAACTCCTTTGCATACAGCTTGTCGGCATGGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp ATCAACGGCTCTATGCAGAAGTGTCTGAAGACACCCACTGGGTCCTaGGCCCCAGCATGTAGCATCGCAACCATGTCTGACCAGAGTGGA +
Preference number: 1 (lower is better)
Translates to: INGSMQKCLKTPTGS*APACSIATMSDQSG
Trigger: TCCACTCTGGTCAGACATGGTTGCGATGCTACATGCTGGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp GCTCCTGCAAGAAGCAGATTTCGGACAATGATCTCTGAGCCGGCCTaGACAGCAAGGTGCAGAGGGGTCAACTTGGAAGCATCCTGGACT +
Preference number: 1 (lower is better)
Translates to: APARSRFRTMISEPA*TARCRGVNLEASWT
Trigger: AGTCCAGGATGCTTCCAAGTTGACCCCTCTGCACCTTGCTGTTCAGGCCGGCTCAGAGATCATTGTCCGAAATCTGCTTCTTGCAGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp GCAGGTCCTGCTGTGCAGCGAGATGGAGAGCGGTCTGACGATGCTTaGTTAACTCATTCACCTTGGCTCCTGCAAGAAGCAGATTTCGGA +
Preference number: 1 (lower is better)
Translates to: AGPAVQRDGERSDDA*LTHSPWLLQEADFG
Trigger: TCCGAAATCTGCTTCTTGCAGGAGCCAAGGTGAATGAGTTAACCAAGCATCGTCAGACCGCTCTCCATCTCGCTGCACAGCAGGACCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp TCACCCCAAGGCGAACCCCAGACCGAACGATGGCACGGCACAAGTTaGCATTCCCTTTCATGTATGCTAAGAGCAGCACTGTGTTGCCTT +
Preference number: 1 (lower is better)
Translates to: SPQGEPQTERWHGTS*HSLSCMLRAALCCL
Trigger: AAGGCAACACAGTGCTGCTCTTAGCATACATGAAAGGGAATGCCAACTTGTGCCGTGCCATCGTTCGGTCTGGGGTTCGCCTTGGGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp CTGTCTGTAAGTTTGGATTGGCACCTTGCTGCAGGAGCTCTGCTGTaGGGTTGGCCAGGCCATGCCGACAAGCTGTATGCAAAGGAGTTT +
Preference number: 1 (lower is better)
Translates to: LSVSLDWHLAAGALL*GWPGHADKLYAKEF
Trigger: AAACTCCTTTGCATACAGCTTGTCGGCATGGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp ATTCACCTTGGCTCCTGCAAGAAGCAGATTTCGGACAATGATCTCTaGGCCGGCCTGAACAGCAAGGTGCAGAGGGGTCAACTTGGAAGC +
Preference number: 1 (lower is better)
Translates to: IHLGSCKKQISDNDL*AGLNSKVQRGQLGS
Trigger: GCTTCCAAGTTGACCCCTCTGCACCTTGCTGTTCAGGCCGGCTCAGAGATCATTGTCCGAAATCTGCTTCTTGCAGGAGCCAAGGTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 90 bp ATATCAGCTTGGTGCTCCAGTAGGAAGAGAGCGCTCTTGCTGTCCTaGCGCTGTATGGCCATGTGCAGCAATGTCTGTCCATCTGACATG +
Preference number: 1 (lower is better)
Translates to: ISAWCSSRKRALLLS*RCMAMCSNVCPSDM
Trigger: CATGTCAGATGGACAGACATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACTGGAGCACCAAGCTGATAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp GCAGTAGACTCATTGTTTTCATCAACGGCTCTATGCAGAAGTGTCTaGAGACACCCACTGGGTCCTGGGCCCCAGCATGTAGCATCGCAA +
Preference number: 1 (lower is better)
Translates to: AVDSLFSSTALCRSV*RHPLGPGPQHVASQ
Trigger: TTGCGATGCTACATGCTGGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATGAAAACAATGAGTCTACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp CGAGAGATGAGACAGCTGCTGGGTGTCAAGCTGCCACAGGCATTCTaGCGCCCAGCAGCAGCAACATTGGTAAAGCTTTCAGTTGTTAAG +
Preference number: 1 (lower is better)
Translates to: REMRQLLGVKLPQAF*RPAAATLVKLSVVK
Trigger: CTTAACAACTGAAAGCTTTACCAATGTTGCTGCTGCTGGGCGTCAGAATGCCTGTGGCAGCTTGACACCCAGCAGCTGTCTCATCTCTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR GCA 90 bp GCAACCATGTCTGACCAGAGTGGAAGCAATGTCCTCCAGATTACTTaGCAAGGCAAGCCACAGTGGTGGGTTCCCTTTTTCATCTGGCAC +
Preference number: 1 (lower is better)
Translates to: ATMSDQSGSNVLQIT*QGKPQWWVPFFIWH
Trigger: GTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGACATTGCTTCCACTCTGGTCAGACATGGTTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp GCTGTATGCAAAGGAGTTTCTCCCCATTTGTTCCTGTGGTTGGCATaGGCACCACTAGTTGCCAGGAAGAGAGCAGCAGCCTCATTTCCA +
Preference number: 1 (lower is better)
Translates to: AVCKGVSPHLFLWLA*APLVARKRAAASFP
Trigger: TGGAAATGAGGCTGCTGCTCTCTTCCTGGCAACTAGTGGTGCCCATGCCAACCACAGGAACAAATGGGGAGAAACTCCTTTGCATACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp GGAAGCAATGTCCTCCAGATTACTTGCCAAGGCAAGCCACAGTGGTaGGTTCCCTTTTTCATCTGGCACAGACATGTCAGCTCCTCGAGT +
Preference number: 1 (lower is better)
Translates to: GSNVLQITCQGKPQW*VPFFIWHRHVSSSS
Trigger: ACTCGAGGAGCTGACATGTCTGTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGACATTGCTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp AGTGGAAGCAATGTCCTCCAGATTACTTGCCAAGGCAAGCCACAGTaGTGGGTTCCCTTTTTCATCTGGCACAGACATGTCAGCTCCTCG +
Preference number: 1 (lower is better)
Translates to: SGSNVLQITCQGKPQ*WVPFFIWHRHVSSS
Trigger: CGAGGAGCTGACATGTCTGTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGACATTGCTTCCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp CTCCTTGGTTATTATTCACCCCAAGGCGAACCCCAGACCGAACGATaGCACGGCACAAGTTGGCATTCCCTTTCATGTATGCTAAGAGCA +
Preference number: 1 (lower is better)
Translates to: LLGYYSPQGEPQTER*HGTSWHSLSCMLRA
Trigger: TGCTCTTAGCATACATGAAAGGGAATGCCAACTTGTGCCGTGCCATCGTTCGGTCTGGGGTTCGCCTTGGGGTGAATAATAACCAAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 90 bp AAAGTGGTCTATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTaGCACCTTGTCCTTGGTACCATAAGATATCATGGAACGCCCAGT +
Preference number: 1 (lower is better)
Translates to: KVVYTNTCLQLWPSC*HLVLGTIRYHGTPS
Trigger: ACTGGGCGTTCCATGATATCTTATGGTACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATAGACCACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 90 bp ATTACTTGCCAAGGCAAGCCACAGTGGTGGGTTCCCTTTTTCATCTaGCACAGACATGTCAGCTCCTCGAGTACATATGGCATCAACCAC +
Preference number: 1 (lower is better)
Translates to: ITCQGKPQWWVPFFI*HRHVSSSSTYGINH
Trigger: GTGGTTGATGCCATATGTACTCGAGGAGCTGACATGTCTGTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp GTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATTCTCTGAGATaGACGCTACGTTACTGGAAGGGAACATTGTCTCCAAGTGTCCTT +
Preference number: 1 (lower is better)
Translates to: VLSQPRQGDFVNSLR*TLRYWKGTLSPSVL
Trigger: AAGGACACTTGGAGACAATGTTCCCTTCCAGTAACGTAGCGTCCATCTCAGAGAATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 90 bp GCGATTGTGTGCATGCCAGTCCATAATGCCAGGCCGAGAACAGTTTaGTCTCTGGAATCCTTGAGGCTGAAGTCTGGAATAATTTGTAGG +
Preference number: 1 (lower is better)
Translates to: AIVCMPVHNARPRTV*SLESLRLKSGIICR
Trigger: CCTACAAATTATTCCAGACTTCAGCCTCAAGGATTCCAGAGACCAAACTGTTCTCGGCCTGGCATTATGGACTGGCATGCACACAATCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp ACTTGGAAGCATCCTGGACTCTGGAGTTCACATTGGCCTGGACACTaGTCAGGAACAAGACACTTTCAATGTCAGAGTTCTGAACTGCCA +
Preference number: 1 (lower is better)
Translates to: TWKHPGLWSSHWPGH*SGTRHFQCQSSELP
Trigger: TGGCAGTTCAGAACTCTGACATTGAAAGTGTCTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTTCCAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp AGAAGAGCCCGGATATTGTTGAGTCGACCATGCATGACCGCAAGATaGAGAGCATTATTTCCATTCTCATCCACAGCAGCGAAGTCCACT +
Preference number: 1 (lower is better)
Translates to: RRARILLSRPCMTAR*RALFPFSSTAAKST
Trigger: AGTGGACTTCGCTGCTGTGGATGAGAATGGAAATAATGCTCTTCATCTTGCGGTCATGCATGGTCGACTCAACAATATCCGGGCTCTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp TGTGCTGCTAGCCAATTCCTATCACATTTGTCACGCAGGTTAAACTaGCCTGGTCCAACCAGTGAGACATCTAGTGCAATAGACCACAGT +
Preference number: 1 (lower is better)
Translates to: CAASQFLSHLSRRLN*PGPTSETSSAIDHS
Trigger: ACTGTGGTCTATTGCACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGATAGGAATTGGCTAGCAGCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 90 bp ACAATGATCAGCGTCATCCTGCTTCCCTATGTGCCCTTTCCACCCTaGTTCATAACCATACCATTCCTACCTTTCCCACTAAAGAACCAC +
Preference number: 1 (lower is better)
Translates to: TMISVILLPYVPFPP*FITIPFLPFPLKNH
Trigger: GTGGTTCTTTAGTGGGAAAGGTAGGAATGGTATGGTTATGAACCAGGGTGGAAAGGGCACATAGGGAAGCAGGATGACGCTGATCATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 90 bp TTCCTGTCATCACATCAGGAGCATCAGTGTTGCTGCCGCGTTGAATaGGTCTGGCTGCAAAGCTATTCTCATCAAATGATGTCCCATTCA +
Preference number: 1 (lower is better)
Translates to: FLSSHQEHQCCCRVE*VWLQSYSHQMMSHS
Trigger: TGAATGGGACATCATTTGATGAGAATAGCTTTGCAGCCAGACTCATTCAACGCGGCAGCAACACTGATGCTCCTGATGTGATGACAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp CAATTTCCTGTCATCACATCAGGAGCATCAGTGTTGCTGCCGCGTTaGATGAGTCTGGCTGCAAAGCTATTCTCATCAAATGATGTCCCA +
Preference number: 1 (lower is better)
Translates to: QFPVITSGASVLLPR*MSLAAKLFSSNDVP
Trigger: TGGGACATCATTTGATGAGAATAGCTTTGCAGCCAGACTCATTCAACGCGGCAGCAACACTGATGCTCCTGATGTGATGACAGGAAATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp CACAGGCTTGTTCAGGTCAAACTTTATAATAGGGATCTCCTTGGTTaGGCATTTATGGCAAAGAAGACGGCCGCAGTGACGACAGTGATG +
Preference number: 1 (lower is better)
Translates to: HRLVQVKLYNRDLLG*AFMAKKTAAVTTVM
Trigger: CATCACTGTCGTCACTGCGGCCGTCTTCTTTGCCATAAATGCTCAACCAAGGAGATCCCTATTATAAAGTTTGACCTGAACAAGCCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp TCAGAAACAACTCATGGTTCTGAGGTAGAGGACAGAAACATCATGTaGACCCCACTCCTTGGAGAGAATATGGCAGATGAACTGAGCAGT +
Preference number: 1 (lower is better)
Translates to: SETTHGSEVEDRNIM*TPLLGENMADELSS
Trigger: ACTGCTCAGTTCATCTGCCATATTCTCTCCAAGGAGTGGGGTCCACATGATGTTTCTGTCCTCTACCTCAGAACCATGAGTTGTTTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 90 bp CAGAAACATCATGTGGACCCCACTCCTTGGAGAGAATATGGCAGATaGACTGAGCAGTCTAATATTCAGACTGGACTGAATTGGCTACTG +
Preference number: 1 (lower is better)
Translates to: QKHHVDPTPWREYGR*TEQSNIQTGLNWLL
Trigger: CAGTAGCCAATTCAGTCCAGTCTGAATATTAGACTGCTCAGTTCATCTGCCATATTCTCTCCAAGGAGTGGGGTCCACATGATGTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 90 bp CCAACCAGTGAGACATCTAGTGCAATAGACCACAGTCTGACACACTaGCAGTCATACAGAATCATTTGTAACAATCAGGGATCACGCCAT +
Preference number: 1 (lower is better)
Translates to: PTSETSSAIDHSLTH*QSYRIICNNQGSRH
Trigger: ATGGCGTGATCCCTGATTGTTACAAATGATTCTGTATGACTGTCAGTGTGTCAGACTGTGGTCTATTGCACTAGATGTCTCACTGGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR GCA 90 bp GCATACACTCTAAGAAGAGATCAAAGATGGCTGCTGCATTTTCTTTaGCATACTGTCCCAAAATGTGTAGTGGTGACTGGCCTCTCAGAT +
Preference number: 1 (lower is better)
Translates to: AYTLRRDQRWLLHFL*HTVPKCVVVTGLSD
Trigger: ATCTGAGAGGCCAGTCACCACTACACATTTTGGGACAGTATGGCAAAGAAAATGCAGCAGCCATCTTTGATCTCTTCTTAGAGTGTATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 90 bp TCCTTGAGGCTGAAGTCTGGAATAATTTGTAGGTTGTTGGTGGCATaGAGAGCATTGGCTTTCTGCTCTAAGATGACAGAAACCACATCT +
Preference number: 1 (lower is better)
Translates to: SLRLKSGIICRLLVA*RALAFCSKMTETTS
Trigger: AGATGTGGTTTCTGTCATCTTAGAGCAGAAAGCCAATGCTCTTCATGCCACCAACAACCTACAAATTATTCCAGACTTCAGCCTCAAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 90 bp GACACTGATCAGGAACAAGACACTTTCAATGTCAGAGTTCTGAACTaGCACATGGAGAAAATTCCGACCTTTATTATCTACCTGCTCAGC +
Preference number: 1 (lower is better)
Translates to: DTDQEQDTFNVRVLN*HMEKIPTFIIYLLS
Trigger: GCTGAGCAGGTAGATAATAAAGGTCGGAATTTTCTCCATGTGGCAGTTCAGAACTCTGACATTGAAAGTGTCTTGTTCCTGATCAGTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 90 bp TGTCCAGAGGATACTCAGGCATACACTCTAAGAAGAGATCAAAGATaGCTGCTGCATTTTCTTTGCCATACTGTCCCAAAATGTGTAGTG +
Preference number: 1 (lower is better)
Translates to: CPEDTQAYTLRRDQR*LLHFLCHTVPKCVV
Trigger: CACTACACATTTTGGGACAGTATGGCAAAGAAAATGCAGCAGCCATCTTTGATCTCTTCTTAGAGTGTATGCCTGAGTATCCTCTGGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGAGGAGGGCAGCACAGTaGGCATGGCATGGTCTGGGG +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALRRAAQ*AWHGLG
Trigger: CCCCAGACCATGCCATGCTCACTGTGCTGCCCTCCT...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp CTCATAGCTGGCCGGGGCCTTGGGCTGTTCAGCTCTGATGAGGCACAGCGCCACTCTGAAGACACCCACTaGGTCCTGGGCCCCAGCATG +
Preference number: 2 (lower is better)
Translates to: LIAGRGLGLFSSDEAQRHSEDTH*VLGPSM
Trigger: CATGCTGGGGCCCAGGACCCAGTGGGTGTCTTCAGA...GTGGCGCTGTGCCTCATCAGAGCTGAACAGCCCAAGGCCCCGGCCAGCTATGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGGGACTGAGCAGATGGTaGGCAGGTCCTGCTGTGCAG +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALGLSRW*AGPAVQ
Trigger: CTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCC...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR GCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGTGCTGGGTGTCAAGCTaGCACAGGCATTCTGACGCC +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALCWVSS*HRHSDA
Trigger: GGCGTCAGAATGCCTGTGGCAGCTTGACACCCAGCA...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGCAGCAAGACGAGAGATaGGACAGCTGCTGGGTGTCA +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALQQDER*DSCWVS
Trigger: TGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTG...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGCCGCAGGAAGACAACTaGCAGCTCTTGCTCTGGGTA +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALPQEDN*QLLLWV
Trigger: TACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGG...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCCTGAGGGCTCTGTTCTaGGTCAGCCCAGGCAGGGAG +
Preference number: 2 (lower is better)
Translates to: GLQRQDAARREMRQLLGVLRALF*VSPGRE
Trigger: CTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAG...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGCTGTGGAAGAAAGCCTaGGCCACATCTACAGCATGG +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALLWKKA*ATSTAW
Trigger: CCATGCTGTAGATGTGGCTCAGGCTTTCTTCCACAG...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCGAGCAGAGCAGCTGCTaGGGAGGTGCCAGGGATGCA +
Preference number: 2 (lower is better)
Translates to: EQAAAAGTKDLCFVASLIEQSSC*GGARDA
Trigger: TGCATCCCTGGCACCTCCCCAGCAGCTGCTCTGCTC...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCGAGCAGAGCAGCTGCTaGGGAGGTGCCAGGGATGCA +
Preference number: 2 (lower is better)
Translates to: GLQRQDAARREMRQLLGVEQSSC*GGARDA
Trigger: TGCATCCCTGGCACCTCCCCAGCAGCTGCTCTGCTC...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCTGCCAGCTCTTGCTCTaGGTAGGAGGCAGGCCGGTG +
Preference number: 2 (lower is better)
Translates to: EQAAAAGTKDLCFVASLICQLLL*VGGRPV
Trigger: CACCGGCCTGCCTCCTACCCAGAGCAAGAGCTGGCA...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATGGGCAGGTCCTGCTGTaGAGCGAGATGGAGAGCGGT +
Preference number: 2 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNGQVLL*SEMESG
Trigger: ACCGCTCTCCATCTCGCTGCACAGCAGGACCTGCCC...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATTGCCAGCTCTTGCTCTaGGTAGGAGGCAGGCCGGTG +
Preference number: 2 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNCQLLL*VGGRPV
Trigger: CACCGGCCTGCCTCCTACCCAGAGCAAGAGCTGGCA...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGGGATTGGCACCTTGCTaGAGGAGCTCTGCTGTGAGG +
Preference number: 2 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDEGLAPC*RSSAVR
Trigger: CCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCC...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR GCA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCATGGTGGGCAGGTCCTaGTGTGCAGCGAGATGGAGA +
Preference number: 2 (lower is better)
Translates to: GLQRQDAARREMRQLLGVMVGRS*CAARWR
Trigger: TCTCCATCTCGCTGCACAGCAGGACCTGCCCACCAT...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCACCAGGGATGCAGGCCTaGGTCCTCCTGGGGGCCTCA +
Preference number: 2 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPPGMQA*VLLGAS
Trigger: TGAGGCCCCCAGGAGGACCCAGGCCTGCATCCCTGG...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGGCCACATCTACAGCATaGCTACCAATGCTCAAGTCA +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALATSTA*LPMLKS
Trigger: TGACTTGAGCATTGGTAGCCATGCTGTAGATGTGGC...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CAA 90 bp GACTCTTTAGGTACCGGCAGAGCCTCCTCTGTCTGTAAGTTTGGATaGGCACCTTGCTGCAGGAGCTCTGCTGTGAGGTTGGCCAGGCCA +
Preference number: 2 (lower is better)
Translates to: DSLGTGRASSVCKFG*APCCRSSAVRLARP
Trigger: TGGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGACAGAGGAGGCTCTGCCGGTACCTAAAGAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACCACTAGTGGGAGCTaGTGTTTGATGGCCAGCTGG +
Preference number: 2 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDETTSGS*CLMASW
Trigger: CCAGCTGGCCATCAAACATCAGCTCCCACTAGTGGT...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR GCA 90 bp CATCAACGGCTCTATGCAGAAGTGTCTGAAGACACCCACTGGGTCCTGGGCCCCAGGTTGGCCAGGCCATaGCGACAAGCTGTATGCAAA +
Preference number: 2 (lower is better)
Translates to: HQRLYAEVSEDTHWVLGPRLARP*RQAVCK
Trigger: TTTGCATACAGCTTGTCGGCATGGCCTGGCCAACCT...GGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR GCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTTTGCTGCAGGAGCTCTaGTGTGAGGTTGGCCAGGCC +
Preference number: 2 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGLLQEL*CEVGQA
Trigger: GGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAA...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR GCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATGGAAGAGAGCGCTCTTaGTGTCCTGCCGCTGTATGG +
Preference number: 2 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNGRERS*CPAAVW
Trigger: CCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCC...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR GCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGGCAGCACAGTCAAAGTaGATTTCTTCCACCACTCAA +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALAAQSK*ISSTTQ
Trigger: TTGAGTGGTGGAAGAAATGCACTTTGACTGTGCTGC...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGCTATGCAGAAGTGTCTaGAGACACCCACTGGGTCCT +
Preference number: 2 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDELCRSV*RHPLGP
Trigger: AGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAG...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGATCCAAGGAAGAAAGTaGTGCCAAAAGAAGTCCCTT +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALIQGRK*CQKKSL
Trigger: AAGGGACTTCTTTTGGCATCACTTTCTTCCTTGGAT...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGATGGTTATAGGCAATTaGCATGTGCAGTGGTGTTTG +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALMVIGN*HVQWCL
Trigger: CAAACACCACTGCACATGGCAATTGCCTATAACCAT...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR GCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATCCGCAGGAAGACAACTaGCAGCTCTTGCTCTGGGTA +
Preference number: 2 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNPQEDN*QLLLWV
Trigger: TACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGG...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGTGGAAACTGACTACATaGTCCTATAGTTGTTGGCCA +
Preference number: 2 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALWKLTT*SYSCWP
Trigger: TGGCCAACAACTATAGGAGCATGTAGTCAGTTTCCA...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGGGCAAGCCACAGTGGTaGGTTCCCTTTTTCATCTGG +
Preference number: 2 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDEGKPQW*VPFFIW
Trigger: CCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCC...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 90 bp TGTAAGTTTGGATTGGCACCTTGCTGCAGGAGCTCTGCTGTGAGGTaGGCCAGGCCATGCCGACAAGCTGTATGCAAAGGAGTTTCTCCC +
Preference number: 2 (lower is better)
Translates to: CKFGLAPCCRSSAVR*ARPCRQAVCKGVSP
Trigger: GGGAGAAACTCCTTTGCATACAGCTTGTCGGCATGGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAACTTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 90 bp TTCACCCCAAGGCGAACCCCAGACCGAACGATGGCACGGCACAAGTaGGCATTCCCTTTCATGTATGCTAAGAGCAGCACTGTGTTGCCT +
Preference number: 2 (lower is better)
Translates to: FTPRRTPDRTMARHK*AFPFMYAKSSTVLP
Trigger: AGGCAACACAGTGCTGCTCTTAGCATACATGAAAGGGAATGCCAACTTGTGCCGTGCCATCGTTCGGTCTGGGGTTCGCCTTGGGGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGCATCGCAACCATGTCTaGCCAGAGTGGAAGCAATGT +
Preference number: 2 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDEHRNHV*PEWKQC
Trigger: ACATTGCTTCCACTCTGGTCAGACATGGTTGCGATG...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAAGCCGCTCTCTGCTCTaGGGGCTCTGTTCTGAGTCA +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRSRSLL*GLCSES
Trigger: TGACTCAGAACAGAGCCCTCAGAGCAGAGAGCGGCT...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAGGCCGAGAACAGTTTaGTCTCTGGAATCCTTGAGG +
Preference number: 2 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSRPRTV*SLESLR
Trigger: CCTCAAGGATTCCAGAGACCAAACTGTTCTCGGCCT...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGTGTCCTGCCGCTGTATaGCCATGTGCAGCAATGTCT +
Preference number: 2 (lower is better)
Translates to: LQRQDAARREMRQLLGVKCPAAV*PCAAMS
Trigger: AGACATTGCTGCACATGGCCATACAGCGGCAGGACA...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CATCAACGGCTCTATGCAGAAGTGTCTGAAGACACCCACTGGGTCCTGGGCCCCGTTCCCTTTTTCATCTaGCACAGACATGTCAGCTCC +
Preference number: 2 (lower is better)
Translates to: HQRLYAEVSEDTHWVLGPVPFFI*HRHVSS
Trigger: GGAGCTGACATGTCTGTGCCAGATGAAAAAGGGAAC...GGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAGAGCATGGCATGGTCTaGGGGATTGCGGCTGTGGAA +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVREHGMV*GIAAVE
Trigger: TTCCACAGCCGCAATCCCCCAGACCATGCCATGCTC...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CAA 90 bp TCCCAGCTGATGCGGTCATCCCACACTGAGCAGCACCAGAGCAGTTaGAGAGCCAAAGTGGTCTATACAAACACGTGCCTGCAGTTATGG +
Preference number: 2 (lower is better)
Translates to: SQLMRSSHTEQHQSS*RAKVVYTNTCLQLW
Trigger: CCATAACTGCAGGCACGTGTTTGTATAGACCACTTTGGCTCTCAAACTGCTCTGGTGCTGCTCAGTGTGGGATGACCGCATCAGCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CAA 90 bp GATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCAC +
Preference number: 2 (lower is better)
Translates to: DLVTDGCEPPCGCWD*NSGPSEEQSGALTH
Trigger: GTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGACAGCAAGACGAGAGATaGGACAGCTGCTGGGTGTCA +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRQQDER*DSCWVS
Trigger: TGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTG...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCTGCCGACAAGCTGTATaGAAAGGAGTTTCTCCCCAT +
Preference number: 2 (lower is better)
Translates to: GLQRQDAARREMRQLLGVCRQAV*KGVSPH
Trigger: ATGGGGAGAAACTCCTTTGCATACAGCTTGTCGGCA...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp ACTTGCCAAGGCAAGCCACAGTGGTGGGTTCCCTTTTTCATCTGGCACAGACATTTCCTGTGGTTGGCATaGGCACCACTAGTTGCCAGG +
Preference number: 2 (lower is better)
Translates to: TCQGKPQWWVPFFIWHRHFLWLA*APLVAR
Trigger: CCTGGCAACTAGTGGTGCCCATGCCAACCACAGGAA...ATGTCTGTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAACCGGAGCCCAGCAGCTaGGCAGCGATTGTGTGCATG +
Preference number: 2 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKEPEPSS*AAIVCM
Trigger: CATGCACACAATCGCTGCCCAGCTGCTGGGCTCCGG...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCTGGCACGGCACAAGTTaGCATTCCCTTTCATGTATG +
Preference number: 2 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSWHGTS*HSLSCM
Trigger: CATACATGAAAGGGAATGCCAACTTGTGCCGTGCCA...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 90 bp CTGACATTTATATCAGCTTGGTGCTCCAGTAGGAAGAGAGCGCTCTaGCTGTCCTGCCGCTGTATGGCCATGTGCAGCAATGTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: LTFISAWCSSRKRAL*LSCRCMAMCSNVCP
Trigger: TGGACAGACATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACTGGAGCACCAAGCTGATATAAATGTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 90 bp TTTTCACTATATCAGTTCTGTATAGTGAGCATAGCTCAGAGGCCTTaGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGGAG +
Preference number: 2 (lower is better)
Translates to: FSLYQFCIVSIAQRP*LSCFLCWAGRGALE
Trigger: CTCCAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGCTATGCTCACTATACAGAACTGATATAGTGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGATGCTGCCGCGTTGAATaGGTCTGGCTGCAAAGCTAT +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRCCRVE*VWLQSY
Trigger: ATAGCTTTGCAGCCAGACTCATTCAACGCGGCAGCA...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTGGAAGCCAGCATCTGTaGGGGAGACATTTACATGCT +
Preference number: 2 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGGSQHL*GRHLHA
Trigger: AGCATGTAAATGTCTCCCTCACAGATGCTGGCTTCC...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp GCAGTGACGACAGTGATGTTTTCGAGTTGTGACTCCAAACTTGGCAGTACATTCGGAGGACTGAGCAGATaGTGGGCAGGTCCTGCTGTG +
Preference number: 2 (lower is better)
Translates to: AVTTVMFSSCDSKLGSTFGGLSR*WAGPAV
Trigger: CACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCC...GAATGTACTGCCAAGTTTGGAGTCACAACTCGAAAACATCACTGTCGTCACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp AGTAGGAAGAGAGCGCTCTTGCTGTCCTGCCGCTGTATGGCCATGTGCAGCAATGCTATTCTCATCAAATaGTGTCCCATTCACCACAGG +
Preference number: 2 (lower is better)
Translates to: SRKRALLLSCRCMAMCSNAILIK*CPIHHR
Trigger: CCTGTGGTGAATGGGACATCATTTGATGAGAATAGC...ATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTGTGTTGCTGCCGCGTTaGATGAGTCTGGCTGCAAAG +
Preference number: 2 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSVLLPR*MSLAAK
Trigger: CTTTGCAGCCAGACTCATTCAACGCGGCAGCAACAC...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAGGAAGCCAGCATCTGTaGGGGAGACATTTACATGCT +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRGSQHL*GRHLHA
Trigger: AGCATGTAAATGTCTCCCTCACAGATGCTGGCTTCC...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCATGCACAGAACGCTGGTaGGGTCTGTCAGTATGTGTC +
Preference number: 2 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPCTERW*GLSVCV
Trigger: GACACATACTGACAGACCTCACCAGCGTTCTGTGCA...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGACGCTGTATGGCCATGTaGAGCAATGTCTGTCCATCT +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRRCMAM*SNVCPS
Trigger: AGATGGACAGACATTGCTGCACATGGCCATACAGCG...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGACAAGGCAAGCCACAGTaGTGGGTTCCCTTTTTCATC +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRQGKPQ*WVPFFI
Trigger: GATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTG...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp TTATTATTCACCCCAAGGCGAACCCCAGACCGAACGATGGCACGGCACAAGTTGGAGTTCACATTGGCCTaGACACTGATCAGGAACAAG +
Preference number: 2 (lower is better)
Translates to: LLFTPRRTPDRTMARHKLEFTLA*TLIRNK
Trigger: CTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTC...CAACTTGTGCCGTGCCATCGTTCGGTCTGGGGTTCGCCTTGGGGTGAATAATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 90 bp TGCAGAGGGGTCAACTTGGAAGCATCCTGGACTCTGGAGTTCACATaGGCCTGGACACTGATCAGGAACAAGACACTTTCAATGTCAGAG +
Preference number: 2 (lower is better)
Translates to: CRGVNLEASWTLEFT*AWTLIRNKTLSMSE
Trigger: CTCTGACATTGAAAGTGTCTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATCAATGTCTGTCCATCTaGCATGGTGTCATTGATAGA +
Preference number: 2 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNQCLSI*HGVIDR
Trigger: TCTATCAATGACACCATGTCAGATGGACAGACATTG...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAATATTCAGACTGGACTaGATTGGCTACTGGGGTGGA +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRIFRLD*IGYWGG
Trigger: TCCACCCCAGTAGCCAATTCAGTCCAGTCTGAATAT...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTCTTCTAAACATTCCCTaGTGTTATCTGACGCCCACA +
Preference number: 2 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGLLNIP*CYLTPT
Trigger: TGTGGGCGTCAGATAACATCAGGGAATGTTTAGAAG...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTGTCAGAGTTCTGAACTaGCACATGGAGAAAATTCCG +
Preference number: 2 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGVRVLN*HMEKIP
Trigger: CGGAATTTTCTCCATGTGGCAGTTCAGAACTCTGAC...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATTTCTCCATTAGTACCTaGTTGTCTGGGACTATTCAC +
Preference number: 2 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNFSIST*LSGTIH
Trigger: GTGAATAGTCCCAGACAACCAGGTACTAATGGAGAA...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAGCCACATCTACAGCATaGCTACCAATGCTCAAGTCA +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRATSTA*LPMLKS
Trigger: TGACTTGAGCATTGGTAGCCATGCTGTAGATGTGGC...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTTTTGGACAGCTTCCATaGTGTCAGACAGCTGATTCT +
Preference number: 2 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGFGQLP*CQTADS
Trigger: AGAATCAGCTGTCTGACACCATGGAAGCTGTCCAAA...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 90 bp CTTATTGTTCTTGTAAGTCATGGCACAGGCAAAAGGAGTCAGCCCTaGTCTGTCCCGGACGCTCAACTCAATGTTGGGGTGAGAGATCAA +
Preference number: 2 (lower is better)
Translates to: LIVLVSHGTGKRSQP*SVPDAQLNVGVRDQ
Trigger: TTGATCTCTCACCCCAACATTGAGTTGAGCGTCCGGGACAGACAAGGGCTGACTCCTTTTGCCTGTGCCATGACTTACAAGAACAATAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 90 bp TGTCTCCAAGTGTCCTTGTGTGCTGCTAGCCAATTCCTATCACATTaGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCT +
Preference number: 2 (lower is better)
Translates to: CLQVSLCAASQFLSH*SRRLNWPGPTSETS
Trigger: AGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGATAGGAATTGGCTAGCAGCACACAAGGACACTTGGAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CAA 90 bp CTGAGGGAAGCCAGCATCTGTGAGGGAGACATTTACATGCTGCTGTaGCTTCCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCT +
Preference number: 2 (lower is better)
Translates to: LREASICEGDIYMLL*LPLLSIWQFSHFFS
Trigger: AGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGGAAGCAACAGCAGCATGTAAATGTCTCCCTCACAGATGCTGGCTTCCCTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp GCAGTGACGACAGTGATGTTTTCGAGTTGTGACTCCAAACTTGGCAGTACATTCCTGCATCCTGTGCATTaGCGTTGGCACCAAACTCCA +
Preference number: 2 (lower is better)
Translates to: AVTTVMFSSCDSKLGSTFLHPVH*RWHQTP
Trigger: TGGAGTTTGGTGCCAACGTCAATGCACAGGATGCAG...GAATGTACTGCCAAGTTTGGAGTCACAACTCGAAAACATCACTGTCGTCACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTAACAACTCATGGTTCTaGGGTAGAGGACAGAAACAT +
Preference number: 2 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGNNSWF*GRGQKH
Trigger: ATGTTTCTGTCCTCTACCTCAGAACCATGAGTTGTT...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCTTGAATGAGTCTGGCTaGAAAGCTATTCTCATCAAA +
Preference number: 2 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSLNESG*KAILIK
Trigger: TTTGATGAGAATAGCTTTGCAGCCAGACTCATTCAA...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR GCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATGTGTTTGTAGGTAGATaGTGTCTGCAGAACTCATTA +
Preference number: 2 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNVFVGR*CLQNSL
Trigger: TAATGAGTTCTGCAGACAGCATCTACCTACAAACAC...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTGACAGAAACCACATCTaGATGGTTATAGGCAATTGC +
Preference number: 2 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGDRNHI*MVIGNC
Trigger: GCAATTGCCTATAACCATCCAGATGTGGTTTCTGTC...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 90 bp GATGGACGCTACGTTACTGGAAGGGAACATTGTCTCCAAGTGTCCTaGTGTGCTGCTAGCCAATTCCTATCACATTTGTCACGCAGGTTA +
Preference number: 2 (lower is better)
Translates to: DGRYVTGREHCLQVS*CAASQFLSHLSRRL
Trigger: TAACCTGCGTGACAAATGTGATAGGAATTGGCTAGCAGCACACAAGGACACTTGGAGACAATGTTCCCTTCCAGTAACGTAGCGTCCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR TCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAGAAGGAACAGAAGCTTaGACCTACATATGCTTTAGG +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVREGTEA*TYICFR
Trigger: CCTAAAGCATATGTAGGTTCAAGCTTCTGTTCCTTC...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAAGAGCATTGGCTTTCTaGTCTAAGATGACAGAAACC +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRRALAF*SKMTET
Trigger: GGTTTCTGTCATCTTAGAGCAGAAAGCCAATGCTCT...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAAAAGCATCCTGGACTCTaGAGTTCACATTGGCCTGGA +
Preference number: 2 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKEKHPGL*SSHWPG
Trigger: TCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTT...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp GTCCAGTCCAAGCTGGCTATCAGAACCACTGATGGAAGAGCATGTGATGGCATTCTTTCTGCTCTAAGATaGCAGAAACCACATCTGGAT +
Preference number: 2 (lower is better)
Translates to: VQSKLAIRTTDGRACDGILSALR*QKPHLD
Trigger: ATCCAGATGTGGTTTCTGTCATCTTAGAGCAGAAAG...AATGCCATCACATGCTCTTCCATCAGTGGTTCTGATAGCCAGCTTGGACTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTAGAGAATATGGCAGATaGACTGAGCAGTCTAATATT +
Preference number: 2 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGREYGR*TEQSNI
Trigger: AATATTAGACTGCTCAGTTCATCTGCCATATTCTCT...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CAA 90 bp GGCATACACTCTAAGAAGAGATCAAAGATGGCTGCTGCATTTTCTTaGCCATACTGTCCCAAAATGTGTAGTGGTGACTGGCCTCTCAGA +
Preference number: 2 (lower is better)
Translates to: GIHSKKRSKMAAAFS*PYCPKMCSGDWPLR
Trigger: TCTGAGAGGCCAGTCACCACTACACATTTTGGGACAGTATGGCAAAGAAAATGCAGCAGCCATCTTTGATCTCTTCTTAGAGTGTATGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACACGCTATGCTGGTTGCTaGTGGCCACATGGACAGGCG +
Preference number: 2 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATRYAGC*WPHGQA
Trigger: CGCCTGTCCATGTGGCCATCAGCAACCAGCATAGCG...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp ATGTTTTCGAGTTGTGACTCCAAACTTGGCAGTACATTCATAGCAGTTGGAGCCTCTGTAAGTTTGGATTaGCACCTTGCTGCAGGAGCT +
Preference number: 2 (lower is better)
Translates to: MFSSCDSKLGSTFIAVGASVSLD*HLAAGA
Trigger: AGCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGA...GGCTCCAACTGCTATGAATGTACTGCCAAGTTTGGAGTCACAACTCGAAAACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAAAACAGAAAACCCAGTaGTGTAAGTTTCTCTTTCAG +
Preference number: 2 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRKQKTQ*CKFLFQ
Trigger: CTGAAAGAGAAACTTACACCACTGGGTTTTCTGTTT...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CAA 90 bp TTCATGTATGCTAAGAGCAGCACTGTGTTGCCTTCTGCATCTGGTTaGTCCAGAGGATACTCAGGCATACACTCTAAGAAGAGATCAAAG +
Preference number: 2 (lower is better)
Translates to: FMYAKSSTVLPSASG*SRGYSGIHSKKRSK
Trigger: CTTTGATCTCTTCTTAGAGTGTATGCCTGAGTATCCTCTGGACAAACCAGATGCAGAAGGCAACACAGTGCTGCTCTTAGCATACATGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCACATAAAGATTATATATaGAGTAAGTCACAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPHKDYI*SKSQAG
Trigger: CCCAGCCTGTGACTTACTTCATATATAATCTTTATG...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR-3UTR GCA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGAACACAGCTAGAAAAGTaGAGCACAGTCAAAGTGCAT +
Preference number: 2 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRTQLEK*STVKVH
Trigger: ATGCACTTTGACTGTGCTGCACTTTTCTAGCTGTGT...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CAA 90 bp GTAAGTCCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTaGTCGGTTGTAAGAGTTAATACATTATTTATTCCACACAAGAGG +
Preference number: 2 (lower is better)
Translates to: VSPAVPRLPHCGKPM*SVVRVNTLFIPHKR
Trigger: CCTCTTGTGTGGAATAAATAATGTATTAACTCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGGACTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CCA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACAGCAGAGGGGTCAACTTaGAAGCATCCTGGACTCTGG +
Preference number: 2 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATAEGST*KHPGLW
Trigger: CCAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGC...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAAACCATGGAGGCTCTTTaGAGAGCATATCTAATAATC +
Preference number: 2 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKETMEAL*RAYLII
Trigger: GATTATTAGATATGCTCTCCAAAGAGCCTCCATGGT...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAAAAAATGTTGACTCCTTaGTTATTATTCACCCCAAGG +
Preference number: 2 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKEKMLTP*LLFTPR
Trigger: CCTTGGGGTGAATAATAACCAAGGAGTCAACATTTT...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR TCA 90 bp AAAAATACATTCCATTACACAGAATCCAAAGAAACAATGCTGCTAAGCCTTAGCAGGTTGTTGGTGGCATaGAGAGCATTGGCTTTCTGC +
Preference number: 2 (lower is better)
Translates to: KNTFHYTESKETMLLSLSRLLVA*RALAFC
Trigger: GCAGAAAGCCAATGCTCTTCATGCCACCAACAACCT...GCTAAGGCTTAGCAGCATTGTTTCTTTGGATTCTGTGTAATGGAATGTATTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp AGAGCAGCTGCTGGGGAGGTGCCAGGGATGCAGGCCTaGGTCCTCCTGGGGGCCTCACTAAGAGACTCCACC +
Preference number: 3 (lower is better)
Translates to: RAAAGEVPGMQA*VLLGASLRDST
Trigger: GGTGGAGTCTCTTAGTGAGGCCCCCAGGAGGACCCAGGCCTGCATCCCTGGCACCTCCCCAGCAGCTGCTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp CTGGCCAGGGCAGTGTACAGCAGGAGGGCAGCACAGTaGGCATGGCATGGTCTGGGGGATTGCGGCTGTGGA +
Preference number: 3 (lower is better)
Translates to: LARAVYSRRAAQ*AWHGLGDCGCG
Trigger: TCCACAGCCGCAATCCCCCAGACCATGCCATGCTCACTGTGCTGCCCTCCTGCTGTACACTGCCCTGGCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR GCA 72 bp CCTAGAGTGACCAGCGCTCATCCAGCAGCCGCTCTCTaGTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAG +
Preference number: 3 (lower is better)
Translates to: PRVTSAHPAAAL*SEGSVLSQPRQ
Trigger: CTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAGAGCGGCTGCTGGATGAGCGCTGGTCACTCTAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 72 bp TCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTaGCAGGGGAGCTCTGGAGCTTCAGGTGGCTCTAGG +
Preference number: 3 (lower is better)
Translates to: SEAFAELLPLLG*QGSSGASGGSR
Trigger: CCTAGAGCCACCTGAAGCTCCAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 72 bp ACAGCAGGAGGGCAGCACAGTGAGCATGGCATGGTCTaGGGGATTGCGGCTGTGGAAGAAAGCCTGAGCCAC +
Preference number: 3 (lower is better)
Translates to: TAGGQHSEHGMV*GIAAVEESLSH
Trigger: GTGGCTCAGGCTTTCTTCCACAGCCGCAATCCCCCAGACCATGCCATGCTCACTGTGCTGCCCTCCTGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 72 bp AGTCCACTCCATTCTCTAGGAGGACTGAGCAGATGGTaGGCAGGTCCTGCTGTGCAGCGAGATGGAGAGCGG +
Preference number: 3 (lower is better)
Translates to: SPLHSLGGLSRW*AGPAVQRDGER
Trigger: CCGCTCTCCATCTCGCTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCCTAGAGAATGGAGTGGACT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp CATCAACGGCTCTATGCAGAAGTGTCTGAAGACACCCACTGGGTCCTGGGCCCCGTTTGGATTGGCACCTaGCTGCAGGAGCTCTGCTGT +
Preference number: 3 (lower is better)
Translates to: HQRLYAEVSEDTHWVLGPVWIGT*LQELCC
Trigger: ACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAAC...GGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGTGGTCTCTGGAATCCTaGAGGCTGAAGTCTGGAATA +
Preference number: 3 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALWSLES*RLKSGI
Trigger: TATTCCAGACTTCAGCCTCAAGGATTCCAGAGACCA...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 72 bp GCCTCCTCTGTCTGTAAGTTTGGATTGGCACCTTGCTaGAGGAGCTCTGCTGTGAGGTTGGCCAGGCCATGC +
Preference number: 3 (lower is better)
Translates to: ASSVCKFGLAPC*RSSAVRLARPC
Trigger: GCATGGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGACAGAGGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp CGAAGTCCACTCCATTCTCTAGGAGGACTGAGCAGATaGTGGGCAGGTCCTGCTGTGCAGCGAGATGGAGAG +
Preference number: 3 (lower is better)
Translates to: RSPLHSLGGLSR*WAGPAVQRDGE
Trigger: CTCTCCATCTCGCTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCCTAGAGAATGGAGTGGACTTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp CCTCGAGTACATATGGCATCAACCACTAGTGGGAGCTaGTGTTTGATGGCCAGCTGGAGGGCAGTCTCCCCG +
Preference number: 3 (lower is better)
Translates to: PRVHMASTTSGS*CLMASWRAVSP
Trigger: CGGGGAGACTGCCCTCCAGCTGGCCATCAAACATCAGCTCCCACTAGTGGTTGATGCCATATGTACTCGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp GGCAGGTCCTGCTGTGCAGCGAGATGGAGAGCGGTCTaGCGATGCTTGGTTAACTCATTCACCTTGGCTCCT +
Preference number: 3 (lower is better)
Translates to: GRSCCAARWRAV*RCLVNSFTLAP
Trigger: AGGAGCCAAGGTGAATGAGTTAACCAAGCATCGTCAGACCGCTCTCCATCTCGCTGCACAGCAGGACCTGCC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 72 bp CCATTTGTTCCTGTGGTTGGCATGGGCACCACTAGTTaGCAGGAAGAGAGCAGCAGCCTCATTTCCAGCCCC +
Preference number: 3 (lower is better)
Translates to: PFVPVVGMGTTS*QEESSSLISSP
Trigger: GGGGCTGGAAATGAGGCTGCTGCTCTCTTCCTGGCAACTAGTGGTGCCCATGCCAACCACAGGAACAAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 72 bp TGGTGCTCCAGTAGGAAGAGAGCGCTCTTGCTGTCCTaGCGCTGTATGGCCATGTGCAGCAATGTCTGTCCA +
Preference number: 3 (lower is better)
Translates to: WCSSRKRALLLS*RCMAMCSNVCP
Trigger: TGGACAGACATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACTGGAGCACCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 72 bp GGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTaGTCTTACCCACTGAGCCATCTCACCAGCCCCATG +
Preference number: 3 (lower is better)
Translates to: GFELWTFGRAVG*SYPLSHLTSPM
Trigger: CATGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CCA 72 bp ATGGTGTCATTGATAGAGGCTCCGGAGCCCAGCAGCTaGGCAGCGATTGTGTGCATGCCAGTCCATAATGCC +
Preference number: 3 (lower is better)
Translates to: MVSLIEAPEPSS*AAIVCMPVHNA
Trigger: GGCATTATGGACTGGCATGCACACAATCGCTGCCCAGCTGCTGGGCTCCGGAGCCTCTATCAATGACACCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp AGCCGGCCTGAACAGCAAGGTGCAGAGGGGTCAACTTaGAAGCATCCTGGACTCTGGAGTTCACATTGGCCT +
Preference number: 3 (lower is better)
Translates to: SRPEQQGAEGST*KHPGLWSSHWP
Trigger: AGGCCAATGTGAACTCCAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGCACCTTGCTGTTCAGGCCGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp CATCAACGGCTCTATGCAGAAGTGTCTGAAGACACCCACTGGGTCCTGGGCCCCCATTTGTTCCTGTGGTaGGCATGGGCACCACTAGTT +
Preference number: 3 (lower is better)
Translates to: HQRLYAEVSEDTHWVLGPHLFLW*AWAPLV
Trigger: AACTAGTGGTGCCCATGCCAACCACAGGAACAAATG...GGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGGTCTGTAAGTTTGGATaGGCACCTTGCTGCAGGAGC +
Preference number: 3 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDEVCKFG*APCCRS
Trigger: GCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGAC...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGTGTCCTCCAGATTACTaGCCAAGGCAAGCCACAGTG +
Preference number: 3 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDECPPDY*PRQATV
Trigger: CACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGACA...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCATGACGCTATGCTGGTaGCTGATGGCCACATGGACA +
Preference number: 3 (lower is better)
Translates to: GLQRQDAARREMRQLLGVMTLCW*LMATWT
Trigger: TGTCCATGTGGCCATCAGCAACCAGCATAGCGTCAT...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGCACCATGGAGGCTCTTaGGAGAGCATATCTAATAAT +
Preference number: 3 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALHHGGS*ESISNN
Trigger: ATTATTAGATATGCTCTCCAAAGAGCCTCCATGGTG...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp CCGCTGTATGGCCATGTGCAGCAATGTCTGTCCATCTaGCATGGTGTCATTGATAGAGGCTCCGGAGCCCAG +
Preference number: 3 (lower is better)
Translates to: PLYGHVQQCLSI*HGVIDRGSGAQ
Trigger: CTGGGCTCCGGAGCCTCTATCAATGACACCATGTCAGATGGACAGACATTGCTGCACATGGCCATACAGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp GAAACAATGCTGCTAAGCCTTAGCCATGGTCCCAGCTaGTGCGGTCATCCCACACTGAGCAGCACCAGAGCA +
Preference number: 3 (lower is better)
Translates to: ETMLLSLSHGPS*CGHPTLSSTRA
Trigger: TGCTCTGGTGCTGCTCAGTGTGGGATGACCGCATCAGCTGGGACCATGGCTAAGGCTTAGCAGCATTGTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR GCA 72 bp TATCAGCTTGGTGCTCCAGTAGGAAGAGAGCGCTCTTaGTGTCCTGCCGCTGTATGGCCATGTGCAGCAATG +
Preference number: 3 (lower is better)
Translates to: YQLGAPVGRERS*CPAAVWPCAAM
Trigger: CATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACTGGAGCACCAAGCTGATA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp GTAGGAAGAGAGCGCTCTTGCTGTCCTGCCGCTGTATaGCCATGTGCAGCAATGTCTGTCCATCTGACATGG +
Preference number: 3 (lower is better)
Translates to: VGRERSCCPAAV*PCAAMSVHLTW
Trigger: CCATGTCAGATGGACAGACATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp GGCGAACCCCAGACCGAACGATGGCACGGCACAAGTTaGCATTCCCTTTCATGTATGCTAAGAGCAGCACTG +
Preference number: 3 (lower is better)
Translates to: GEPQTERWHGTS*HSLSCMLRAAL
Trigger: CAGTGCTGCTCTTAGCATACATGAAAGGGAATGCCAACTTGTGCCGTGCCATCGTTCGGTCTGGGGTTCGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp CAGCACAGTCAAAGTGCATTTCTTCCACCACTCAAGTaGCAGCGACCGAGGACTCCAAAGACAGGACGCAGC +
Preference number: 3 (lower is better)
Translates to: QHSQSAFLPPLK*QRPRTPKTGRS
Trigger: GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAATGCACTTTGACTGTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CAA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGAGTGTTGCTGCCGCGTaGAATGAGTCTGGCTGCAAA +
Preference number: 3 (lower is better)
Translates to: LQRQDAARREMRQLLGVKSVAAA*NESGCK
Trigger: TTTGCAGCCAGACTCATTCAACGCGGCAGCAACACT...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp CTTGTCTGTCCCGGACGCTCAACTCAATGTTGGGGTGAGAGATCAACAGCTGAAGCAGCTGGGCAGCGATaGTGTGCATGCCAGTCCATA +
Preference number: 3 (lower is better)
Translates to: LVCPGRSTQCWGERSTAEAAGQR*CACQSI
Trigger: TATGGACTGGCATGCACACAATCGCTGCCCAGCTGC...TTCAGCTGTTGATCTCTCACCCCAACATTGAGTTGAGCGTCCGGGACAGACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCTGTCTCCAAGTGTCCTaGTGTGCTGCTAGCCAATTC +
Preference number: 3 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSCLQVS*CAASQF
Trigger: GAATTGGCTAGCAGCACACAAGGACACTTGGAGACA...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CAA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGACATGGGTTTTTGAATaGGATTCACCAATGACACAG +
Preference number: 3 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALTWVFE*DSPMTQ
Trigger: CTGTGTCATTGGTGAATCCAATTCAAAAACCCATGT...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 72 bp AGACAGCTGCTGGGTGTCAAGCTGCCACAGGCATTCTaGCGCCCAGCAGCAGCAACATTGGTAAAGCTTTCA +
Preference number: 3 (lower is better)
Translates to: RQLLGVKLPQAF*RPAAATLVKLS
Trigger: TGAAAGCTTTACCAATGTTGCTGCTGCTGGGCGTCAGAATGCCTGTGGCAGCTTGACACCCAGCAGCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 72 bp GCTCTAGGGGCTGATCCTGAGGGAAGCCAGCATCTGTaGGGGAGACATTTACATGCTGCTGTTGCTTCCTCT +
Preference number: 3 (lower is better)
Translates to: ALGADPEGSQHL*GRHLHAAVASS
Trigger: AGAGGAAGCAACAGCAGCATGTAAATGTCTCCCTCACAGATGCTGGCTTCCCTCAGGATCAGCCCCTAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 72 bp AAAGGAGTTTCTCCCCATTTGTTCCTGTGGTTGGCATaGGCACCACTAGTTGCCAGGAAGAGAGCAGCAGCC +
Preference number: 3 (lower is better)
Translates to: KGVSPHLFLWLA*APLVARKRAAA
Trigger: GGCTGCTGCTCTCTTCCTGGCAACTAGTGGTGCCCATGCCAACCACAGGAACAAATGGGGAGAAACTCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp ACAGCAAGGTGCAGAGGGGTCAACTTGGAAGCATCCTaGACTCTGGAGTTCACATTGGCCTGGACACTGATC +
Preference number: 3 (lower is better)
Translates to: TARCRGVNLEAS*TLEFTLAWTLI
Trigger: GATCAGTGTCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGCACCTTGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCGTTAACTCATTCACCTaGGCTCCTGCAAGAAGCAGA +
Preference number: 3 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSVNSFT*APARSR
Trigger: TCTGCTTCTTGCAGGAGCCAAGGTGAATGAGTTAAC...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp TTATTATTCACCCCAAGGCGAACCCCAGACCGAACGATGGCACGGCACAAGTTGCCTTCTGCATCTGGTTaGTCCAGAGGATACTCAGGC +
Preference number: 3 (lower is better)
Translates to: LLFTPRRTPDRTMARHKLPSASG*SRGYSG
Trigger: GCCTGAGTATCCTCTGGACAAACCAGATGCAGAAGG...CAACTTGTGCCGTGCCATCGTTCGGTCTGGGGTTCGCCTTGGGGTGAATAATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCACATCAAAGCAAATGTaGCAAACCCGCACAGGCTTG +
Preference number: 3 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSTSKQM*QTRTGL
Trigger: CAAGCCTGTGCGGGTTTGCAACATTTGCTTTGATGT...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTCCTGTCTTCCACCCCTaGCCTGCAAACAAGACTAGT +
Preference number: 3 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGPVFHP*PANKTS
Trigger: ACTAGTCTTGTTTGCAGGCAAGGGGTGGAAGACAGG...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 72 bp AGAAGCAGATTTCGGACAATGATCTCTGAGCCGGCCTaGACAGCAAGGTGCAGAGGGGTCAACTTGGAAGCA +
Preference number: 3 (lower is better)
Translates to: RSRFRTMISEPA*TARCRGVNLEA
Trigger: TGCTTCCAAGTTGACCCCTCTGCACCTTGCTGTTCAGGCCGGCTCAGAGATCATTGTCCGAAATCTGCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp GGATGCAGCAGTTGCTCACTCTGCACAGAACGCTGGTaGGGTCTGTCAGTATGTGTCACATGGGATGCTAGA +
Preference number: 3 (lower is better)
Translates to: GCSSCSLCTERW*GLSVCVTWDAR
Trigger: TCTAGCATCCCATGTGACACATACTGACAGACCTCACCAGCGTTCTGTGCAGAGTGAGCAACTGCTGCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR GCA 72 bp TCATTTGTAACAATCAGGGATCACGCCATGGTCTTCTaGCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGG +
Preference number: 3 (lower is better)
Translates to: SFVTIRDHAMVF*RRKTTASSCSG
Trigger: CCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGACCATGGCGTGATCCCTGATTGTTACAAATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 72 bp CAAGGCAAGCCACAGTGGTGGGTTCCCTTTTTCATCTaGCACAGACATGTCAGCTCCTCGAGTACATATGGC +
Preference number: 3 (lower is better)
Translates to: QGKPQWWVPFFI*HRHVSSSSTYG
Trigger: GCCATATGTACTCGAGGAGCTGACATGTCTGTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp GTCCTCCAGATTACTTGCCAAGGCAAGCCACAGTGGTaGGTTCCCTTTTTCATCTGGCACAGACATGTCAGC +
Preference number: 3 (lower is better)
Translates to: VLQITCQGKPQW*VPFFIWHRHVS
Trigger: GCTGACATGTCTGTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp CTGCTGCCACCTTGTCCTTGGTACCATAAGATATCATaGAACGCCCAGTTCCACACAGCTGCCAAACTGGCA +
Preference number: 3 (lower is better)
Translates to: LLPPCPWYHKIS*NAQFHTAAKLA
Trigger: TGCCAGTTTGGCAGCTGTGTGGAACTGGGCGTTCCATGATATCTTATGGTACCAAGGACAAGGTGGCAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CAA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCCCAGCAGCAGCAACATaGGTAAAGCTTTCAGTTGTT +
Preference number: 3 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSPAAAT*VKLSVV
Trigger: AACAACTGAAAGCTTTACCAATGTTGCTGCTGCTGG...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CAA 90 bp CAGATTACTTGCCAAGGCAAGCCACAGTGGTGGGTTCCCTTTTTCATCTGGCACCCTCTGTCTGTAAGTTaGGATTGGCACCTTGCTGCA +
Preference number: 3 (lower is better)
Translates to: QITCQGKPQWWVPFFIWHPLSVS*DWHLAA
Trigger: TGCAGCAAGGTGCCAATCCAAACTTACAGACAGAGG...GTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAATCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp CATGGACAGGCGTTCTCCCTTCTGCATCCTGTGCATTaGCGTTGGCACCAAACTCCAAAAGACACTGTACTG +
Preference number: 3 (lower is better)
Translates to: HGQAFSLLHPVH*RWHQTPKDTVL
Trigger: CAGTACAGTGTCTTTTGGAGTTTGGTGCCAACGTCAATGCACAGGATGCAGAAGGGAGAACGCCTGTCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp TATTATTCACCCCAAGGCGAACCCCAGACCGAACGATaGCACGGCACAAGTTGGCATTCCCTTTCATGTATG +
Preference number: 3 (lower is better)
Translates to: YYSPQGEPQTER*HGTSWHSLSCM
Trigger: CATACATGAAAGGGAATGCCAACTTGTGCCGTGCCATCGTTCGGTCTGGGGTTCGCCTTGGGGTGAATAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAATGCAGAGGGGTCAACTaGGAAGCATCCTGGACTCTG +
Preference number: 3 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKECRGVN*EASWTL
Trigger: CAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGCA...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp TGCATGCCAGTCCATAATGCCAGGCCGAGAACAGTTTaGTCTCTGGAATCCTTGAGGCTGAAGTCTGGAATA +
Preference number: 3 (lower is better)
Translates to: CMPVHNARPRTV*SLESLRLKSGI
Trigger: TATTCCAGACTTCAGCCTCAAGGATTCCAGAGACCAAACTGTTCTCGGCCTGGCATTATGGACTGGCATGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp AGCGTCATCCTGCTTCCCTATGTGCCCTTTCCACCCTaGTTCATAACCATACCATTCCTACCTTTCCCACTA +
Preference number: 3 (lower is better)
Translates to: SVILLPYVPFPP*FITIPFLPFPL
Trigger: TAGTGGGAAAGGTAGGAATGGTATGGTTATGAACCAGGGTGGAAAGGGCACATAGGGAAGCAGGATGACGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CAA 90 bp CCTTCTGCATCTGGTTTGTCCAGAGGATACTCAGGCATACACTCTAAGAAGAGAGGAGTTTCTCCCCATTaGTTCCTGTGGTTGGCATGG +
Preference number: 3 (lower is better)
Translates to: PSASGLSRGYSGIHSKKRGVSPH*FLWLAW
Trigger: CCATGCCAACCACAGGAACAAATGGGGAGAAACTCC...TCTCTTCTTAGAGTGTATGCCTGAGTATCCTCTGGACAAACCAGATGCAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp CAGATTACTTGCCAAGGCAAGCCACAGTGGTGGGTTCCCTTTTTCATCTGGCACGATGGTTATAGGCAATaGCCATGTGCAGTGGTGTTT +
Preference number: 3 (lower is better)
Translates to: QITCQGKPQWWVPFFIWHDGYRQ*PCAVVF
Trigger: AAACACCACTGCACATGGCAATTGCCTATAACCATC...GTGCCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTGGCAAGTAATCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp ATGTTTTCGAGTTGTGACTCCAAACTTGGCAGTACATTCATAGCAGTTGGAGCCTCTGACATGGTGTCATaGATAGAGGCTCCGGAGCCC +
Preference number: 3 (lower is better)
Translates to: MFSSCDSKLGSTFIAVGASDMVS*IEAPEP
Trigger: GGGCTCCGGAGCCTCTATCAATGACACCATGTCAGA...GGCTCCAACTGCTATGAATGTACTGCCAAGTTTGGAGTCACAACTCGAAAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp CCTTCTGCATCTGGTTTGTCCAGAGGATACTCAGGCATACACTCTAAGAAGAGAGAGTCTGTCCATCCCTaGCTTCCTCTTCTCCTTCTC +
Preference number: 3 (lower is better)
Translates to: PSASGLSRGYSGIHSKKRESVHP*LPLLLL
Trigger: GAGAAGGAGAAGAGGAAGCAAGGGATGGACAGACTC...TCTCTTCTTAGAGTGTATGCCTGAGTATCCTCTGGACAAACCAGATGCAGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 72 bp AGGCAATTGCCATGTGCAGTGGTGTTTGTAGGTAGATaGTGTCTGCAGAACTCATTAGGACGGGAGACTCTT +
Preference number: 3 (lower is better)
Translates to: RQLPCAVVFVGR*CLQNSLGRETL
Trigger: AAGAGTCTCCCGTCCTAATGAGTTCTGCAGACAGCATCTACCTACAAACACCACTGCACATGGCAATTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 72 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTaGCACCTTGTCCTTGGTACCATAAGATATCATGGA +
Preference number: 3 (lower is better)
Translates to: YTNTCLQLWPSC*HLVLGTIRYHG
Trigger: TCCATGATATCTTATGGTACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR GCA 72 bp GTCTATACAAACACGTGCCTGCAGTTATGGCCCAGCTaGTGCCACCTTGTCCTTGGTACCATAAGATATCAT +
Preference number: 3 (lower is better)
Translates to: VYTNTCLQLWPS*CHLVLGTIRYH
Trigger: ATGATATCTTATGGTACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CAA 90 bp ATGTTTTCGAGTTGTGACTCCAAACTTGGCAGTACATTCATAGCAGTTGGAGCCTCTGCATCCTGTGCATaGACGTTGGCACCAAACTCC +
Preference number: 3 (lower is better)
Translates to: MFSSCDSKLGSTFIAVGASASCA*TLAPNS
Trigger: GGAGTTTGGTGCCAACGTCAATGCACAGGATGCAGA...GGCTCCAACTGCTATGAATGTACTGCCAAGTTTGGAGTCACAACTCGAAAACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp TCACATCAGGAGCATCAGTGTTGCTGCCGCGTTGAATaGGTCTGGCTGCAAAGCTATTCTCATCAAATGATG +
Preference number: 3 (lower is better)
Translates to: SHQEHQCCCRVE*VWLQSYSHQMM
Trigger: CATCATTTGATGAGAATAGCTTTGCAGCCAGACTCATTCAACGCGGCAGCAACACTGATGCTCCTGATGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp GTCATCACATCAGGAGCATCAGTGTTGCTGCCGCGTTaGATGAGTCTGGCTGCAAAGCTATTCTCATCAAAT +
Preference number: 3 (lower is better)
Translates to: VITSGASVLLPR*MSLAAKLFSSN
Trigger: ATTTGATGAGAATAGCTTTGCAGCCAGACTCATTCAACGCGGCAGCAACACTGATGCTCCTGATGTGATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp CATCCTGGACTCTGGAGTTCACATTGGCCTGGACACTaGTCAGGAACAAGACACTTTCAATGTCAGAGTTCT +
Preference number: 3 (lower is better)
Translates to: HPGLWSSHWPGH*SGTRHFQCQSS
Trigger: AGAACTCTGACATTGAAAGTGTCTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTCCAGAGTCCAGGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp CGGATATTGTTGAGTCGACCATGCATGACCGCAAGATaGAGAGCATTATTTCCATTCTCATCCACAGCAGCG +
Preference number: 3 (lower is better)
Translates to: RILLSRPCMTAR*RALFPFSSTAA
Trigger: CGCTGCTGTGGATGAGAATGGAAATAATGCTCTTCATCTTGCGGTCATGCATGGTCGACTCAACAATATCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp TTGGAAGCATCCTGGACTCTGGAGTTCACATTGGCCTaGACACTGATCAGGAACAAGACACTTTCAATGTCA +
Preference number: 3 (lower is better)
Translates to: LEASWTLEFTLA*TLIRNKTLSMS
Trigger: TGACATTGAAAGTGTCTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp CGAACAAGAACAGGTAAGCAATTTCATGGTGAAATCTaGTCAGCATGGAGAGAGCACAGGAGAGACACACAG +
Preference number: 3 (lower is better)
Translates to: RTRTGKQFHGEI*SAWREHRRDTQ
Trigger: CTGTGTGTCTCTCCTGTGCTCTCTCCATGCTGACCAGATTTCACCATGAAATTGCTTACCTGTTCTTGTTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 72 bp ACTCATGGTTCTGAGGTAGAGGACAGAAACATCATGTaGACCCCACTCCTTGGAGAGAATATGGCAGATGAA +
Preference number: 3 (lower is better)
Translates to: THGSEVEDRNIM*TPLLGENMADE
Trigger: TTCATCTGCCATATTCTCTCCAAGGAGTGGGGTCCACATGATGTTTCTGTCCTCTACCTCAGAACCATGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CAA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGATTTCAGCTCTCATCTTaGAACCCTGTTAGAAAGATT +
Preference number: 3 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRFQLSS*NPVRKI
Trigger: AATCTTTCTAACAGGGTTCAAAGATGAGAGCTGAAA...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 72 bp GTTCAGGTCAAACTTTATAATAGGGATCTCCTTGGTTaGGCATTTATGGCAAAGAAGACGGCCGCAGTGACG +
Preference number: 3 (lower is better)
Translates to: VQVKLYNRDLLG*AFMAKKTAAVT
Trigger: CGTCACTGCGGCCGTCTTCTTTGCCATAAATGCTCAACCAAGGAGATCCCTATTATAAAGTTTGACCTGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp CATGTGGACCCCACTCCTTGGAGAGAATATGGCAGATaGACTGAGCAGTCTAATATTCAGACTGGACTGAAT +
Preference number: 3 (lower is better)
Translates to: HVDPTPWREYGR*TEQSNIQTGLN
Trigger: ATTCAGTCCAGTCTGAATATTAGACTGCTCAGTTCATCTGCCATATTCTCTCCAAGGAGTGGGGTCCACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 72 bp AGGATTCTTTGGACAGCTTCCATGGTGTCAGACAGCTaGTTCTGCATCAGCAGTCACATGTGCAACCATAAA +
Preference number: 3 (lower is better)
Translates to: RILWTASMVSDS*FCISSHMCNHK
Trigger: TTTATGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCTGTCCAAAGAATCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR GCA 72 bp AGACTCCACCCAGAGTCAGTACATCAAAGCAAATGTTaGAAACCCGCACAGGCTTGTTCAGGTCAAACTTTA +
Preference number: 3 (lower is better)
Translates to: RLHPESVHQSKC*KPAQACSGQTL
Trigger: TAAAGTTTGACCTGAACAAGCCTGTGCGGGTTTGCAACATTTGCTTTGATGTACTGACTCTGGGTGGAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp AGCCAATTCCTATCACATTTGTCACGCAGGTTAAACTaGCCTGGTCCAACCAGTGAGACATCTAGTGCAATA +
Preference number: 3 (lower is better)
Translates to: SQFLSHLSRRLN*PGPTSETSSAI
Trigger: TATTGCACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGATAGGAATTGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 72 bp TCTAATATTCAGACTGGACTGAATTGGCTACTGGGGTaGAATAGGCCCGAAACTCGTGTTCTAACACATCAC +
Preference number: 3 (lower is better)
Translates to: SNIQTGLNWLLG*NRPETRVLTHH
Trigger: GTGATGTGTTAGAACACGAGTTTCGGGCCTATTCCACCCCAGTAGCCAATTCAGTCCAGTCTGAATATTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 72 bp TGGTGGCATGAAGAGCATTGGCTTTCTGCTCTAAGATaGCAGAAACCACATCTGGATGGTTATAGGCAATTG +
Preference number: 3 (lower is better)
Translates to: WWHEEHWLSALR*QKPHLDGYRQL
Trigger: CAATTGCCTATAACCATCCAGATGTGGTTTCTGTCATCTTAGAGCAGAAAGCCAATGCTCTTCATGCCACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 72 bp CTAAGAAGAGATCAAAGATGGCTGCTGCATTTTCTTTaGCATACTGTCCCAAAATGTGTAGTGGTGACTGGC +
Preference number: 3 (lower is better)
Translates to: LRRDQRWLLHFL*HTVPKCVVVTG
Trigger: GCCAGTCACCACTACACATTTTGGGACAGTATGGCAAAGAAAATGCAGCAGCCATCTTTGATCTCTTCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp TCTTTGCCATACTGTCCCAAAATGTGTAGTGGTGACTaGCCTCTCAGATTAAAGGCTTCAGCATCTACTGTA +
Preference number: 3 (lower is better)
Translates to: SLPYCPKMCSGD*PLRLKASASTV
Trigger: TACAGTAGATGCTGAAGCCTTTAATCTGAGAGGCCAGTCACCACTACACATTTTGGGACAGTATGGCAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp GTTTTAGCAGGAAGGATGTGTCAGGGAGAGAGAACCTaGATCAAAGTCACAGCTATCTCCTTTCTTATCAGT +
Preference number: 3 (lower is better)
Translates to: VLAGRMCQGERT*IKVTAISFLIS
Trigger: ACTGATAAGAAAGGAGATAGCTGTGACTTTGATCCAGGTTCTCTCTCCCTGACACATCCTTCCTGCTAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 72 bp ATTTACATGCTGCTGTTGCTTCCTCTCCTAAGCATTTaGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAG +
Preference number: 3 (lower is better)
Translates to: IYMLLLLPLLSI*QFSHFFSSPGK
Trigger: CTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGGAAGCAACAGCAGCATGTAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CCA 72 bp AAACAAGGGAGTCCTCAGTGTAGGCACTTAAGCTTGTaGGACATTGCTGTGTTAGAAGATCATAGCAAACTA +
Preference number: 3 (lower is better)
Translates to: KQGSPQCRHLSL*DIAVLEDHSKL
Trigger: TAGTTTGCTATGATCTTCTAACACAGCAATGTCCCACAAGCTTAAGTGCCTACACTGAGGACTCCCTTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 72 bp CTGAAGTCTGGAATAATTTGTAGGTTGTTGGTGGCATaGAGAGCATTGGCTTTCTGCTCTAAGATGACAGAA +
Preference number: 3 (lower is better)
Translates to: LKSGIICRLLVA*RALAFCSKMTE
Trigger: TTCTGTCATCTTAGAGCAGAAAGCCAATGCTCTTCATGCCACCAACAACCTACAAATTATTCCAGACTTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR TCA 72 bp AGCAACAGAGAGCATACCACTATCCAAGGAAGAAAGTaGTGCCAAAAGAAGTCCCTTTTATTCATACAGCCA +
Preference number: 3 (lower is better)
Translates to: SNREHTTIQGRK*CQKKSLLFIQP
Trigger: TGGCTGTATGAATAAAAGGGACTTCTTTTGGCATCACTTTCTTCCTTGGATAGTGGTATGCTCTCTGTTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR TCA 72 bp GAAGAGCATGTGATGGCATTCTTGAACATGGGTTTTTaGATTGGATTCACCAATGACACAGCTAGAAAAGTG +
Preference number: 3 (lower is better)
Translates to: EEHVMAFLNMGF*IGFTNDTARKV
Trigger: CACTTTTCTAGCTGTGTCATTGGTGAATCCAATTCAAAAACCCATGTTCAAGAATGCCATCACATGCTCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR GCA 72 bp CAGGAACAAGACACTTTCAATGTCAGAGTTCTGAACTaGCACATGGAGAAAATTCCGACCTTTATTATCTAC +
Preference number: 3 (lower is better)
Translates to: QEQDTFNVRVLN*HMEKIPTFIIY
Trigger: GTAGATAATAAAGGTCGGAATTTTCTCCATGTGGCAGTTCAGAACTCTGACATTGAAAGTGTCTTGTTCCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR-3UTR CAA 90 bp AAAAATACATTCCATTACACAGAATCCAAAGAAACAATGCTGCTAAGCCTTAGCCAGGCAGTAGACTCATaGTTTTCATCAACGGCTCTA +
Preference number: 3 (lower is better)
Translates to: KNTFHYTESKETMLLSLSQAVDS*FSSTAL
Trigger: TAGAGCCGTTGATGAAAACAATGAGTCTACTGCCTG...GCTAAGGCTTAGCAGCATTGTTTCTTTGGATTCTGTGTAATGGAATGTATTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR GCA 72 bp CCCTTTTTAGGCAATAAAACCTGGAAACTGACTACATaGTCCTATAGTTGTTGGCCAAGACTGATTAAATGT +
Preference number: 3 (lower is better)
Translates to: PFLGNKTWKLTT*SYSCWPRLIKC
Trigger: ACATTTAATCAGTCTTGGCCAACAACTATAGGAGCATGTAGTCAGTTTCCAGGTTTTATTGCCTAAAAAGGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR-3UTR CAA 90 bp AAAAATACATTCCATTACACAGAATCCAAAGAAACAATGCTGCTAAGCCTTAGCGAAAATGTTGACTCCTaGGTTATTATTCACCCCAAG +
Preference number: 3 (lower is better)
Translates to: KNTFHYTESKETMLLSLSENVDS*VIIHPK
Trigger: CTTGGGGTGAATAATAACCAAGGAGTCAACATTTTC...GCTAAGGCTTAGCAGCATTGTTTCTTTGGATTCTGTGTAATGGAATGTATTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CCA 72 bp AAAACCTGGAAACTGACTACATGCTCCTATAGTTGTTaGCCAAGACTGATTAAATGTTTCCATAAAGATTAT +
Preference number: 3 (lower is better)
Translates to: KTWKLTTCSYSC*PRLIKCFHKDY
Trigger: ATAATCTTTATGGAAACATTTAATCAGTCTTGGCCAACAACTATAGGAGCATGTAGTCAGTTTCCAGGTTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGGGAAGAGAGCGCTCTTaGTGTCCTGCCGCTGTATGG +
Preference number: 4 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALGRERS*CPAAVW
Trigger: CCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCC...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGATGGTGGGCAGGTCCTaGTGTGCAGCGAGATGGAGA +
Preference number: 4 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALMVGRS*CAARWR
Trigger: TCTCCATCTCGCTGCACAGCAGGACCTGCCCACCAT...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCGGGTTGGCACCAGCCTaGAGGAGGGCCTCCGCAATC +
Preference number: 4 (lower is better)
Translates to: EQAAAAGTKDLCFVASLIGLAPA*RRASAI
Trigger: GATTGCGGAGGCCCTCCTGCAGGCTGGTGCCAACCC...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCGCGCTCTTGCTGTCCTaGCGCTGTATGGCCATGTGC +
Preference number: 4 (lower is better)
Translates to: SSAAGRQLPALALGRRQAALLLS*RCMAMC
Trigger: GCACATGGCCATACAGCGGCAGGACAGCAAGAGCGC...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCGGAGGACTGAGCAGATaGTGGGCAGGTCCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: SSAAGRQLPALALGRRQAGGLSR*WAGPAV
Trigger: CACAGCAGGACCTGCCCACCATCTGCTCAGTCCTCC...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp CTCATAGCTGGCCGGGGCCTTGGGCTGTTCAGCTCTGATGAGGCACAGCGCCACCTATGCAGAAGTGTCTaGAGACACCCACTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: LIAGRGLGLFSSDEAQRHLCRSV*RHPLGP
Trigger: AGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAG...GTGGCGCTGTGCCTCATCAGAGCTGAACAGCCCAAGGCCCCGGCCAGCTATGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCGGTCTCCTGGGCTCCTaGTGTGGCAGCATTGACAAG +
Preference number: 4 (lower is better)
Translates to: SSAAGRQLPALALGRRQAGLLGS*CGSIDK
Trigger: CTTGTCAATGCTGCCACAGCAGGAGCCCAGGAGACC...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCGGGCAGGTCCTGCTGTaGAGCGAGATGGAGAGCGGT +
Preference number: 4 (lower is better)
Translates to: EQAAAAGTKDLCFVASLIGQVLL*SEMESG
Trigger: ACCGCTCTCCATCTCGCTGCACAGCAGGACCTGCCC...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCTGTAATGGGGTCTCCTaGGCTCCTGCTGTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: SSAAGRQLPALALGRRQACNGVS*APAVAA
Trigger: TGCTGCCACAGCAGGAGCCCAGGAGACCCCATTACA...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCGACACAGTGATGTACTaGACGGCCAGCCAGAGTGCA +
Preference number: 4 (lower is better)
Translates to: SSAAGRQLPALALGRRQADTVMY*TASQSA
Trigger: TGCACTCTGGCTGGCCGTCCAGTACATCACTGTGTC...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCCCAGCCAGAGTGCAGTaGTGCCTTCGTGATCTTTCA +
Preference number: 4 (lower is better)
Translates to: SSAAGRQLPALALGRRQAPARVQ*CLRDLS
Trigger: TGAAAGATCACGAAGGCAGCACTGCACTCTGGCTGG...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CTCATAGCTGGCCGGGGCCTTGGGCTGTTCAGCTCTGATGAGGCACAGCGCCACTACATTCATAGCAGTTaGAGCCGTCACACCATGGAG +
Preference number: 4 (lower is better)
Translates to: LIAGRGLGLFSSDEAQRHYIHSS*SRHTME
Trigger: CTCCATGGTGTGACGGCTCCAACTGCTATGAATGTA...GTGGCGCTGTGCCTCATCAGAGCTGAACAGCCCAAGGCCCCGGCCAGCTATGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGGTGTTGCTGCCGCGTTaGATGAGTCTGGCTGCAAAG +
Preference number: 4 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDEVLLPR*MSLAAK
Trigger: CTTTGCAGCCAGACTCATTCAACGCGGCAGCAACAC...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCACCACTAGTGGGAGCTaGTGTTTGATGGCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSTTSGS*CLMASW
Trigger: CCAGCTGGCCATCAAACATCAGCTCCCACTAGTGGT...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCCATCGCAACCATGTCTaGCCAGAGTGGAAGCAATGT +
Preference number: 4 (lower is better)
Translates to: SSAAGRQLPALALGRRQAHRNHV*PEWKQC
Trigger: ACATTGCTTCCACTCTGGTCAGACATGGTTGCGATG...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CTCATAGCTGGCCGGGGCCTTGGGCTGTTCAGCTCTGATGAGGCACAGCGCCACCTTAGAAGCATCAAATaGTTCTCCAACTTGGCCACC +
Preference number: 4 (lower is better)
Translates to: LIAGRGLGLFSSDEAQRHLRSIK*FSNLAT
Trigger: GGTGGCCAAGTTGGAGAAGCATTTGATGCTTCTAAG...GTGGCGCTGTGCCTCATCAGAGCTGAACAGCCCAAGGCCCCGGCCAGCTATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGCATCAAAGCAAATGTTaGAAACCCGCACAGGCTTGT +
Preference number: 4 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALHQSKC*KPAQAC
Trigger: ACAAGCCTGTGCGGGTTTGCAACATTTGCTTTGATG...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCGGAGCCGTCACACCATaGAGGCTCTTTGGAGAGCAT +
Preference number: 4 (lower is better)
Translates to: GLQRQDAARREMRQLLGVGAVTP*RLFGEH
Trigger: ATGCTCTCCAAAGAGCCTCCATGGTGTGACGGCTCC...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp GGTACCGGCAGAGCCTCCTCTGTCTGTAAGTTTGGATaGGCACCTTGCTGCAGGAGCTCTGCTGTGAGGTTG +
Preference number: 4 (lower is better)
Translates to: GTGRASSVCKFG*APCCRSSAVRL
Trigger: CAACCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGACAGAGGAGGCTCTGCCGGTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR GCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGTCTGCCAGTTTCTTCTaGAGCTTGACATACTCTTGT +
Preference number: 4 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALSASFF*SLTYSC
Trigger: ACAAGAGTATGTCAAGCTGCAGAAGAAACTGGCAGA...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGGGCCTCCGCAATCTGTaGCATCTCAGACATCACATC +
Preference number: 4 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDEGLRNL*HLRHHI
Trigger: GATGTGATGTCTGAGATGGCACAGATTGCGGAGGCC...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCGCCAGAGTGCAGTGCTaGCTTCGTGATCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: GLQRQDAARREMRQLLGVARVQC*LRDLSA
Trigger: AGCTGAAAGATCACGAAGGCAGCACTGCACTCTGGC...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCTGGGCAGCGATTGTGTaGATGCCAGTCCATAATGCC +
Preference number: 4 (lower is better)
Translates to: GLQRQDAARREMRQLLGVWAAIV*MPVHNA
Trigger: GGCATTATGGACTGGCATGCACACAATCGCTGCCCA...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGTTCCTGTGGTTGGCATaGGCACCACTAGTTGCCAGG +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKFLWLA*APLVAR
Trigger: CCTGGCAACTAGTGGTGCCCATGCCAACCACAGGAA...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCTGTCCTGCCGCTGTATaGCCATGTGCAGCAATGTCT +
Preference number: 4 (lower is better)
Translates to: EQAAAAGTKDLCFVASLICPAAV*PCAAMS
Trigger: AGACATTGCTGCACATGGCCATACAGCGGCAGGACA...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGGCCAAGACAAACTTGTaGGCACTGATGTGCCTGTCC +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKAKTNL*ALMCLS
Trigger: GGACAGGCACATCAGTGCTCACAAGTTTGTCTTGGC...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGATTTTGTATAACAACTaGGCACTCAGGCTACTGAAG +
Preference number: 4 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALILYNN*ALRLLK
Trigger: CTTCAGTAGCCTGAGTGCTCAGTTGTTATACAAAAT...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGTTACACTGCAGCAGCTaGCTGAACACACAGTCGTTC +
Preference number: 4 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDELHCSS*LNTQSF
Trigger: GAACGACTGTGTGTTCAGTCAGCTGCTGCAGTGTAA...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATTGCTGCCGCGTTGAATaGGTCTGGCTGCAAAGCTAT +
Preference number: 4 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNCCRVE*VWLQSY
Trigger: ATAGCTTTGCAGCCAGACTCATTCAACGCGGCAGCA...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGAGGTTGTTGGTGGCATaGAGAGCATTGGCTTTCTGC +
Preference number: 4 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDERLLVA*RALAFC
Trigger: GCAGAAAGCCAATGCTCTTCATGCCACCAACAACCT...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGGGCCTCCGCAATCTGTaGCATCTCAGACATCACATC +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKGLRNL*HLRHHI
Trigger: GATGTGATGTCTGAGATGGCACAGATTGCGGAGGCC...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CCTTCTGCATCTGGTTTGTCCAGAGGATACTCAGGCATACACTCTAAGAAGAGAGGGTTGGCACCAGCCTaGAGGAGGGCCTCCGCAATC +
Preference number: 4 (lower is better)
Translates to: PSASGLSRGYSGIHSKKRGLAPA*RRASAI
Trigger: GATTGCGGAGGCCCTCCTGCAGGCTGGTGCCAACCC...TCTCTTCTTAGAGTGTATGCCTGAGTATCCTCTGGACAAACCAGATGCAGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR CCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGAATGCTTCTCCAACTTaGCCACCTCCTCTTCCGCCA +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKNASPT*PPPLPP
Trigger: TGGCGGAAGAGGAGGTGGCCAAGTTGGAGAAGCATT...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGGGCAAGCCACAGTGGTaGGTTCCCTTTTTCATCTGG +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKGKPQW*VPFFIW
Trigger: CCAGATGAAAAAGGGAACCCACCACTGTGGCTTGCC...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCATCTGAAGACACCCACTaGGTCCTGGGCCCCAGCATG +
Preference number: 4 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPSEDTH*VLGPSM
Trigger: CATGCTGGGGCCCAGGACCCAGTGGGTGTCTTCAGA...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp ATATCAGCTTGGTGCTCCAGTAGGAAGAGAGCGCTCTaGCTGTCCTGCCGCTGTATGGCCATGTGCAGCAAT +
Preference number: 4 (lower is better)
Translates to: ISAWCSSRKRAL*LSCRCMAMCSN
Trigger: ATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACTGGAGCACCAAGCTGATAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 72 bp CTTGTAAGTCATGGCACAGGCAAAAGGAGTCAGCCCTaGTCTGTCCCGGACGCTCAACTCAATGTTGGGGTG +
Preference number: 4 (lower is better)
Translates to: LVSHGTGKRSQP*SVPDAQLNVGV
Trigger: CACCCCAACATTGAGTTGAGCGTCCGGGACAGACAAGGGCTGACTCCTTTTGCCTGTGCCATGACTTACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 72 bp AGGCGAACCCCAGACCGAACGATGGCACGGCACAAGTaGGCATTCCCTTTCATGTATGCTAAGAGCAGCACT +
Preference number: 4 (lower is better)
Translates to: RRTPDRTMARHK*AFPFMYAKSST
Trigger: AGTGCTGCTCTTAGCATACATGAAAGGGAATGCCAACTTGTGCCGTGCCATCGTTCGGTCTGGGGTTCGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 72 bp TATCAGTTCTGTATAGTGAGCATAGCTCAGAGGCCTTaGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGA +
Preference number: 4 (lower is better)
Translates to: YQFCIVSIAQRP*LSCFLCWAGRG
Trigger: TCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGCTATGCTCACTATACAGAACTGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTCGCTATGCTGGTTGCTaGTGGCCACATGGACAGGCG +
Preference number: 4 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSRYAGC*WPHGQA
Trigger: CGCCTGTCCATGTGGCCATCAGCAACCAGCATAGCG...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GTCCAGTCCAAGCTGGCTATCAGAACCACTGATGGAAGAGCATGTGATGGCATTGGTCTCCTGGGCTCCTaGTGTGGCAGCATTGACAAG +
Preference number: 4 (lower is better)
Translates to: VQSKLAIRTTDGRACDGIGLLGS*CGSIDK
Trigger: CTTGTCAATGCTGCCACAGCAGGAGCCCAGGAGACC...AATGCCATCACATGCTCTTCCATCAGTGGTTCTGATAGCCAGCTTGGACTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTAGGTTGGCCAGGCCATaGCGACAAGCTGTATGCAAA +
Preference number: 4 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGRLARP*RQAVCK
Trigger: TTTGCATACAGCTTGTCGGCATGGCCTGGCCAACCT...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCAGGATTGGCACCTTGCTaGAGGAGCTCTGCTGTGAGG +
Preference number: 4 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPGLAPC*RSSAVR
Trigger: CCTCACAGCAGAGCTCCTGCAGCAAGGTGCCAATCC...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGACATGAGGCTGCCAAATaGAGGGGAGTCTGTCCATCC +
Preference number: 4 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRHEAAK*RGVCPS
Trigger: GGATGGACAGACTCCCCTGCATTTGGCAGCCTCATG...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATCCCTTCTGCATCCTGTaGATTGACGTTGGCACCAAA +
Preference number: 4 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNPFCIL*IDVGTK
Trigger: TTTGGTGCCAACGTCAATGCACAGGATGCAGAAGGG...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAGAGCAGCACTGTGTTaGCTTCTGCATCTGGTTTGT +
Preference number: 4 (lower is better)
Translates to: GLQRQDAARREMRQLLGVRAALC*LLHLVC
Trigger: ACAAACCAGATGCAGAAGGCAACACAGTGCTGCTCT...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTAATGCTTCTCCAACTTaGCCACCTCCTCTTCCGCCA +
Preference number: 4 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGNASPT*PPPLPP
Trigger: TGGCGGAAGAGGAGGTGGCCAAGTTGGAGAAGCATT...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CATCAACGGCTCTATGCAGAAGTGTCTGAAGACACCCACTGGGTCCTGGGCCCCAGTCTATCTCCTCTGTaGAAGACAAATTGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: HQRLYAEVSEDTHWVLGPSLSPL*KTNWPD
Trigger: GTCTGGCCAATTTGTCTTCCACAGAGGAGATAGACT...GGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR CCA 90 bp CATCAACGGCTCTATGCAGAAGTGTCTGAAGACACCCACTGGGTCCTGGGCCCCAGCTTCCCAGGTAGCTaGGAATCCATTTCAATCAGA +
Preference number: 4 (lower is better)
Translates to: HQRLYAEVSEDTHWVLGPSFPGS*ESISIR
Trigger: TCTGATTGAAATGGATTCCCAGCTACCTGGGAAGCT...GGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR CCA 90 bp CATCAACGGCTCTATGCAGAAGTGTCTGAAGACACCCACTGGGTCCTGGGCCCCAAGGGGTTTACAGACTaGTCTGAAGACACAGTGATG +
Preference number: 4 (lower is better)
Translates to: HQRLYAEVSEDTHWVLGPKGFTD*SEDTVM
Trigger: CATCACTGTGTCTTCAGACCAGTCTGTAAACCCCTT...GGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR CCA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGACCGGAGCCCAGCAGCTaGGCAGCGATTGTGTGCATG +
Preference number: 4 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRPEPSS*AAIVCM
Trigger: CATGCACACAATCGCTGCCCAGCTGCTGGGCTCCGG...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGCAAGGCAAGCCACAGTaGTGGGTTCCCTTTTTCATC +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKQGKPQ*WVPFFI
Trigger: GATGAAAAAGGGAACCCACCACTGTGGCTTGCCTTG...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp TGCCGACAAGCTGTATGCAAAGGAGTTTCTCCCCATTaGTTCCTGTGGTTGGCATGGGCACCACTAGTTGCC +
Preference number: 4 (lower is better)
Translates to: CRQAVCKGVSPH*FLWLAWAPLVA
Trigger: GGCAACTAGTGGTGCCCATGCCAACCACAGGAACAAATGGGGAGAAACTCCTTTGCATACAGCTTGTCGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 72 bp ATGCGGTCATCCCACACTGAGCAGCACCAGAGCAGTTaGAGAGCCAAAGTGGTCTATACAAACACGTGCCTG +
Preference number: 4 (lower is better)
Translates to: MRSSHTEQHQSS*RAKVVYTNTCL
Trigger: CAGGCACGTGTTTGTATAGACCACTTTGGCTCTCAAACTGCTCTGGTGCTGCTCAGTGTGGGATGACCGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CAA 72 bp TGTATATCACTTGTATACCTGGTGCCTGAGGCGGCTTaGAGCCTCCACATGAGAGCTGGGAATGGAACCCAG +
Preference number: 4 (lower is better)
Translates to: CISLVYLVPEAA*SLHMRAGNGTQ
Trigger: CTGGGTTCCATTCCCAGCTCTCATGTGGAGGCTCAAAGCCGCCTCAGGCACCAGGTATACAAGTGATATACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGGCTATTCTCATCAAATaGTGTCCCATTCACCACAGG +
Preference number: 4 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDEAILIK*CPIHHR
Trigger: CCTGTGGTGAATGGGACATCATTTGATGAGAATAGC...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGACTGCATCCTGTGCATTaGCGTTGGCACCAAACTCCA +
Preference number: 4 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRLHPVH*RWHQTP
Trigger: TGGAGTTTGGTGCCAACGTCAATGCACAGGATGCAG...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CATCAACGGCTCTATGCAGAAGTGTCTGAAGACACCCACTGGGTCCTGGGCCCCGCTATTCTCCTTGTTTaGTTGTGCAGCCAAAAGAGT +
Preference number: 4 (lower is better)
Translates to: HQRLYAEVSEDTHWVLGPAILLV*LCSQKS
Trigger: ACTCTTTTGGCTGCACAAGCAAACAAGGAGAATAGC...GGGGCCCAGGACCCAGTGGGTGTCTTCAGACACTTCTGCATAGAGCCGTTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR GCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAATTGCTGCAGGAGCTCTaGTGTGAGGTTGGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKELLQEL*CEVGQA
Trigger: GGCCTGGCCAACCTCACAGCAGAGCTCCTGCAGCAA...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCAGTCTATCTCCTCTGTaGAAGACAAATTGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: EQAAAAGTKDLCFVASLISLSPL*KTNWPD
Trigger: GTCTGGCCAATTTGTCTTCCACAGAGGAGATAGACT...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTTCCACATCAGCTTTATaGCTAACCAGAGTGGTGGCA +
Preference number: 4 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGSTSAL*LTRVVA
Trigger: TGCCACCACTCTGGTTAGTCATAAAGCTGATGTGGA...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGAGGGATCTCCTTGGTTaGGCATTTATGGCAAAGAAG +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKRDLLG*AFMAKK
Trigger: CTTCTTTGCCATAAATGCTCAACCAAGGAGATCCCT...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATCTTAGAAGCATCAAATaGTTCTCCAACTTGGCCACC +
Preference number: 4 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNLRSIK*FSNLAT
Trigger: GGTGGCCAAGTTGGAGAAGCATTTGATGCTTCTAAG...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTCTGCCCTTGCTATCCTaGATGTTGGGGTTGGCACCA +
Preference number: 4 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSLPLLS*MLGLAP
Trigger: TGGTGCCAACCCCAACATGCAGGATAGCAAGGGCAG...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCAGCCAGAGTGCAGTGCTaGCTTCGTGATCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPARVQC*LRDLSA
Trigger: AGCTGAAAGATCACGAAGGCAGCACTGCACTCTGGC...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GTCCAGTCCAAGCTGGCTATCAGAACCACTGATGGAAGAGCATGTGATGGCATTCCAGCCAGAGTGCAGTaGTGCCTTCGTGATCTTTCA +
Preference number: 4 (lower is better)
Translates to: VQSKLAIRTTDGRACDGIPARVQ*CLRDLS
Trigger: TGAAAGATCACGAAGGCAGCACTGCACTCTGGCTGG...AATGCCATCACATGCTCTTCCATCAGTGGTTCTGATAGCCAGCTTGGACTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCAGAGCATTGGCTTTCTaGTCTAAGATGACAGAAACC +
Preference number: 4 (lower is better)
Translates to: EQAAAAGTKDLCFVASLIRALAF*SKMTET
Trigger: GGTTTCTGTCATCTTAGAGCAGAAAGCCAATGCTCT...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGGTCAGAGTTCTGAACTaGCACATGGAGAAAATTCCG +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKVRVLN*HMEKIP
Trigger: CGGAATTTTCTCCATGTGGCAGTTCAGAACTCTGAC...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGATGTAATGGGGTCTCCTaGGCTCCTGCTGTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRCNGVS*APAVAA
Trigger: TGCTGCCACAGCAGGAGCCCAGGAGACCCCATTACA...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCGACAGAAACCACATCTaGATGGTTATAGGCAATTGC +
Preference number: 4 (lower is better)
Translates to: EQAAAAGTKDLCFVASLIDRNHI*MVIGNC
Trigger: GCAATTGCCTATAACCATCCAGATGTGGTTTCTGTC...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTTGGCACGGCACAAGTTaGCATTCCCTTTCATGTATG +
Preference number: 4 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGWHGTS*HSLSCM
Trigger: CATACATGAAAGGGAATGCCAACTTGTGCCGTGCCA...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp GCCAGCATCTGTGAGGGAGACATTTACATGCTGCTGTaGCTTCCTCTCCTAAGCATTTGGCAGTTCAGCCAC +
Preference number: 4 (lower is better)
Translates to: ASICEGDIYMLL*LPLLSIWQFSH
Trigger: GTGGCTGAACTGCCAAATGCTTAGGAGAGGAAGCAACAGCAGCATGTAAATGTCTCCCTCACAGATGCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp CTTGTCTGTCCCGGACGCTCAACTCAATGTTGGGGTGAGAGATCAACAGCTGAAGCCTGTCCCCAACCTTaGTCTTCAAATCACTGTACT +
Preference number: 4 (lower is better)
Translates to: LVCPGRSTQCWGERSTAEACPQP*SSNHCT
Trigger: AGTACAGTGATTTGAAGATCAAGGTTGGGGACAGGC...TTCAGCTGTTGATCTCTCACCCCAACATTGAGTTGAGCGTCCGGGACAGACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR TCA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCGCAAGATCTCCATTATaGTCTGTTTCGTTAAGCTTC +
Preference number: 4 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSARSPL*SVSLSF
Trigger: GAAGCTTAACGAAACAGATCATAATGGAGATCTTGC...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp GTCCAGTCCAAGCTGGCTATCAGAACCACTGATGGAAGAGCATGTGATGGCATTTTACACTGCAGCAGCTaGCTGAACACACAGTCGTTC +
Preference number: 4 (lower is better)
Translates to: VQSKLAIRTTDGRACDGILHCSS*LNTQSF
Trigger: GAACGACTGTGTGTTCAGTCAGCTGCTGCAGTGTAA...AATGCCATCACATGCTCTTCCATCAGTGGTTCTGATAGCCAGCTTGGACTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp AGTAGGAAGAGAGCGCTCTTGCTGTCCTGCCGCTGTATGGCCATGTGCAGCAATTCTGCCAGTTTCTTCTaGAGCTTGACATACTCTTGT +
Preference number: 4 (lower is better)
Translates to: SRKRALLLSCRCMAMCSNSASFF*SLTYSC
Trigger: ACAAGAGTATGTCAAGCTGCAGAAGAAACTGGCAGA...ATTGCTGCACATGGCCATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR GCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAACTGCCCTTGCTATCCTaGATGTTGGGGTTGGCACCA +
Preference number: 4 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKELPLLS*MLGLAP
Trigger: TGGTGCCAACCCCAACATGCAGGATAGCAAGGGCAG...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCACGCTGTATGGCCATGTaGAGCAATGTCTGTCCATCT +
Preference number: 4 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPRCMAM*SNVCPS
Trigger: AGATGGACAGACATTGCTGCACATGGCCATACAGCG...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGATCTGTAAGTTTGGATTaGCACCTTGCTGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRSVSLD*HLAAGA
Trigger: AGCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGA...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCAAGGCCGAGAACAGTTTaGTCTCTGGAATCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPRPRTV*SLESLR
Trigger: CCTCAAGGATTCCAGAGACCAAACTGTTCTCGGCCT...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCAAAGCATCCTGGACTCTaGAGTTCACATTGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPKHPGL*SSHWPG
Trigger: TCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTT...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGAGCAGAGGGGTCAACTTaGAAGCATCCTGGACTCTGG +
Preference number: 4 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRAEGST*KHPGLW
Trigger: CCAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGC...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp CCTTGCTTCCTCTTCTCCTTCTCCATTAGTACCTGGTaGTCTGGGACTATTCACGTCACAGCCACTGCGAAT +
Preference number: 4 (lower is better)
Translates to: PCFLFSFSISTW*SGTIHVTATAN
Trigger: ATTCGCAGTGGCTGTGACGTGAATAGTCCCAGACAACCAGGTACTAATGGAGAAGGAGAAGAGGAAGCAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 72 bp ACAGGCGTTCTCCCTTCTGCATCCTGTGCATTGACGTaGGCACCAAACTCCAAAAGACACTGTACTGTCTCT +
Preference number: 4 (lower is better)
Translates to: TGVLPSASCALT*APNSKRHCTVS
Trigger: AGAGACAGTACAGTGTCTTTTGGAGTTTGGTGCCAACGTCAATGCACAGGATGCAGAAGGGAGAACGCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 72 bp ACATGGACAGGCGTTCTCCCTTCTGCATCCTGTGCATaGACGTTGGCACCAAACTCCAAAAGACACTGTACT +
Preference number: 4 (lower is better)
Translates to: TWTGVLPSASCA*TLAPNSKRHCT
Trigger: AGTACAGTGTCTTTTGGAGTTTGGTGCCAACGTCAATGCACAGGATGCAGAAGGGAGAACGCCTGTCCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR TCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGGTTTCTTCTGCAGCTTaGCATACTCTTGTCTTAGAA +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKVSSAA*HTLVLE
Trigger: TTCTAAGACAAGAGTATGTCAAGCTGCAGAAGAAAC...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGGCAAGATCTCCATTATaGTCTGTTTCGTTAAGCTTC +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKARSPL*SVSLSF
Trigger: GAAGCTTAACGAAACAGATCATAATGGAGATCTTGC...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCGTCATCCCAGTGACTTaGAATAATTTCTGCACAATA +
Preference number: 4 (lower is better)
Translates to: GLQRQDAARREMRQLLGVVIPVT*NNFCTI
Trigger: TATTGTGCAGAAATTATTGCAAGTCACTGGGATGAC...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAAAAGGAGTCCTGCCCTTaGTATCCTGCATGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKEKESCP*YPACWG
Trigger: ACCCCAACATGCAGGATAGCAAGGGCAGGACTCCTT...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAAAGGGGTTTACAGACTaGTCTGAAGACACAGTGATG +
Preference number: 4 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRKGFTD*SEDTVM
Trigger: CATCACTGTGTCTTCAGACCAGTCTGTAAACCCCTT...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTTGTTCTTGTAAGTCATaGCACAGGCAAAAGGAGTCA +
Preference number: 4 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGCSCKS*HRQKES
Trigger: TGACTCCTTTTGCCTGTGCCATGACTTACAAGAACA...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCACTCTCGTTTTAAAATaGCTTCAGCTGCCTTATTGT +
Preference number: 4 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSTLVLK*LQLPYC
Trigger: ACAATAAGGCAGCTGAAGCCATTTTAAAACGAGAGT...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCAGAGTTCACATTGGCCTaGACACTGATCAGGAACAAG +
Preference number: 4 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPEFTLA*TLIRNK
Trigger: CTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTC...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp GTCAACTTGGAAGCATCCTGGACTCTGGAGTTCACATaGGCCTGGACACTGATCAGGAACAAGACACTTTCA +
Preference number: 4 (lower is better)
Translates to: VNLEASWTLEFT*AWTLIRNKTLS
Trigger: TGAAAGTGTCTTGTTCCTGATCAGTGTCCAGGCCAATGTGAACTCCAGAGTCCAGGATGCTTCCAAGTTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 72 bp GCTAAGAGCAGCACTGTGTTGCCTTCTGCATCTGGTTaGTCCAGAGGATACTCAGGCATACACTCTAAGAAG +
Preference number: 4 (lower is better)
Translates to: AKSSTVLPSASG*SRGYSGIHSKK
Trigger: CTTCTTAGAGTGTATGCCTGAGTATCCTCTGGACAAACCAGATGCAGAAGGCAACACAGTGCTGCTCTTAGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR TCA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTTCCACATCAGCTTTATaGCTAACCAGAGTGGTGGCA +
Preference number: 4 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSSTSAL*LTRVVA
Trigger: TGCCACCACTCTGGTTAGTCATAAAGCTGATGTGGA...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCACTTGCAATAATTTCTaGACAATAGTTCATCAGCGT +
Preference number: 4 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSTCNNF*TIVHQR
Trigger: ACGCTGATGAACTATTGTGCAGAAATTATTGCAAGT...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTTGCCGACAAGCTGTATaGAAAGGAGTTTCTCCCCAT +
Preference number: 4 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSCRQAV*KGVSPH
Trigger: ATGGGGAGAAACTCCTTTGCATACAGCTTGTCGGCA...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTCTGCTGCATTTTCTTTaGCATACTGTCCCAAAATGT +
Preference number: 4 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGLLHFL*HTVPKC
Trigger: ACATTTTGGGACAGTATGGCAAAGAAAATGCAGCAG...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCACTTTCTGCTCTAAGATaGCAGAAACCACATCTGGAT +
Preference number: 4 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPLSALR*QKPHLD
Trigger: ATCCAGATGTGGTTTCTGTCATCTTAGAGCAGAAAG...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGACTTGCAATAATTTCTaGACAATAGTTCATCAGCGT +
Preference number: 4 (lower is better)
Translates to: LQRQDAARREMRQLLGVKTCNNF*TIVHQR
Trigger: ACGCTGATGAACTATTGTGCAGAAATTATTGCAAGT...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCAATGGTTATAGGCAATTaGCATGTGCAGTGGTGTTTG +
Preference number: 4 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPMVIGN*HVQWCL
Trigger: CAAACACCACTGCACATGGCAATTGCCTATAACCAT...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGAGAGATCAAAGATGGCTaGTGCATTTTCTTTGCCATA +
Preference number: 4 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVREIKDG*CIFFAI
Trigger: TATGGCAAAGAAAATGCAGCAGCCATCTTTGATCTC...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGAGTTCCCTTTTTCATCTaGCACAGACATGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRVPFFI*HRHVSS
Trigger: GGAGCTGACATGTCTGTGCCAGATGAAAAAGGGAAC...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GTCCAGTCCAAGCTGGCTATCAGAACCACTGATGGAAGAGCATGTGATGGCATTTTCTCCATTAGTACCTaGTTGTCTGGGACTATTCAC +
Preference number: 4 (lower is better)
Translates to: VQSKLAIRTTDGRACDGIFSIST*LSGTIH
Trigger: GTGAATAGTCCCAGACAACCAGGTACTAATGGAGAA...AATGCCATCACATGCTCTTCCATCAGTGGTTCTGATAGCCAGCTTGGACTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAATTGGTTGAGCATTTATaGCAAAGAAGACGGCCGCAG +
Preference number: 4 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKELVEHL*QRRRPQ
Trigger: CTGCGGCCGTCTTCTTTGCCATAAATGCTCAACCAA...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp TGTCATCACATCAGGAGCATCAGTGTTGCTGCCGCGTaGAATGAGTCTGGCTGCAAAGCTATTCTCATCAAA +
Preference number: 4 (lower is better)
Translates to: CHHIRSISVAAA*NESGCKAILIK
Trigger: TTTGATGAGAATAGCTTTGCAGCCAGACTCATTCAACGCGGCAGCAACACTGATGCTCCTGATGTGATGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR CCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAAAACTTGGAAGCATCCTaGACTCTGGAGTTCACATTG +
Preference number: 4 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKENLEAS*TLEFTL
Trigger: CAATGTGAACTCCAGAGTCCAGGATGCTTCCAAGTT...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACAGGACTGAGCAGATGGTaGGCAGGTCCTGCTGTGCAG +
Preference number: 4 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATGLSRW*AGPAVQ
Trigger: CTGCACAGCAGGACCTGCCCACCATCTGCTCAGTCC...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp AATGCCAGGCCGAGAACAGTTTGGTCTCTGGAATCCTaGAGGCTGAAGTCTGGAATAATTTGTAGGTTGTTG +
Preference number: 4 (lower is better)
Translates to: NARPRTVWSLES*RLKSGIICRLL
Trigger: CAACAACCTACAAATTATTCCAGACTTCAGCCTCAAGGATTCCAGAGACCAAACTGTTCTCGGCCTGGCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
3UTR CAA 72 bp GGCTTGTTCAGGTCAAACTTTATAATAGGGATCTCCTaGGTTGAGCATTTATGGCAAAGAAGACGGCCGCAG +
Preference number: 4 (lower is better)
Translates to: GLFRSNFIIGIS*VEHLWQRRRPQ
Trigger: CTGCGGCCGTCTTCTTTGCCATAAATGCTCAACCAAGGAGATCCCTATTATAAAGTTTGACCTGAACAAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR TCA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTGTTTCTTCTGCAGCTTaGCATACTCTTGTCTTAGAA +
Preference number: 4 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSVSSAA*HTLVLE
Trigger: TTCTAAGACAAGAGTATGTCAAGCTGCAGAAGAAAC...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGACAATGTCTGTCCATCTaGCATGGTGTCATTGATAGA +
Preference number: 4 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRQCLSI*HGVIDR
Trigger: TCTATCAATGACACCATGTCAGATGGACAGACATTG...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTGTGTTTGTAGGTAGATaGTGTCTGCAGAACTCATTA +
Preference number: 4 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSVFVGR*CLQNSL
Trigger: TAATGAGTTCTGCAGACAGCATCTACCTACAAACAC...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACACCCCAGACCGAACGATaGCACGGCACAAGTTGGCAT +
Preference number: 4 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATPQTER*HGTSWH
Trigger: ATGCCAACTTGTGCCGTGCCATCGTTCGGTCTGGGG...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp TACGTTACTGGAAGGGAACATTGTCTCCAAGTGTCCTaGTGTGCTGCTAGCCAATTCCTATCACATTTGTCA +
Preference number: 4 (lower is better)
Translates to: YVTGREHCLQVS*CAASQFLSHLS
Trigger: TGACAAATGTGATAGGAATTGGCTAGCAGCACACAAGGACACTTGGAGACAATGTTCCCTTCCAGTAACGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
3UTR CAA 72 bp TGGAAACAAGGGAGTCCTCAGTGTAGGCACTTAAGCTaGTGGGACATTGCTGTGTTAGAAGATCATAGCAAA +
Preference number: 4 (lower is better)
Translates to: WKQGSPQCRHLS*WDIAVLEDHSK
Trigger: TTTGCTATGATCTTCTAACACAGCAATGTCCCACAAGCTTAAGTGCCTACACTGAGGACTCCCTTGTTTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGAATTTTGTATAACAACTaGGCACTCAGGCTACTGAAG +
Preference number: 4 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRILYNN*ALRLLK
Trigger: CTTCAGTAGCCTGAGTGCTCAGTTGTTATACAAAAT...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACAGACACAGTGATGTACTaGACGGCCAGCCAGAGTGCA +
Preference number: 4 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATDTVMY*TASQSA
Trigger: TGCACTCTGGCTGGCCGTCCAGTACATCACTGTGTC...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGAACATTTATATCAGCTTaGTGCTCCAGTAGGAAGAGA +
Preference number: 4 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRTFISA*CSSRKR
Trigger: TCTCTTCCTACTGGAGCACCAAGCTGATATAAATGT...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGAACCATGGAGGCTCTTTaGAGAGCATATCTAATAATC +
Preference number: 4 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRTMEAL*RAYLII
Trigger: GATTATTAGATATGCTCTCCAAAGAGCCTCCATGGT...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAAGTCATCCCAGTGACTTaGAATAATTTCTGCACAATA +
Preference number: 4 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKEVIPVT*NNFCTI
Trigger: TATTGTGCAGAAATTATTGCAAGTCACTGGGATGAC...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp AAAAATACATTCCATTACACAGAATCCAAAGAAACAATGCTGCTAAGCCTTAGCAAGGAGTCCTGCCCTTaGTATCCTGCATGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: KNTFHYTESKETMLLSLSKESCP*YPACWG
Trigger: ACCCCAACATGCAGGATAGCAAGGGCAGGACTCCTT...GCTAAGGCTTAGCAGCATTGTTTCTTTGGATTCTGTGTAATGGAATGTATTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp AAAAATACATTCCATTACACAGAATCCAAAGAAACAATGCTGCTAAGCCTTAGCGTCCTCCAGATTACTTaGCAAGGCAAGCCACAGTGG +
Preference number: 4 (lower is better)
Translates to: KNTFHYTESKETMLLSLSVLQIT*QGKPQW
Trigger: CCACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGAC...GCTAAGGCTTAGCAGCATTGTTTCTTTGGATTCTGTGTAATGGAATGTATTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACACCCCATTTGTTCCTGTaGTTGGCATGGGCACCACTA +
Preference number: 4 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATPHLFL*LAWAPL
Trigger: TAGTGGTGCCCATGCCAACCACAGGAACAAATGGGG...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
3UTR CAA 72 bp GCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTaGTCGGTTGTAAGAGTTAATACATTATTTATTCCA +
Preference number: 4 (lower is better)
Translates to: AVPRLPHCGKPM*SVVRVNTLFIP
Trigger: TGGAATAAATAATGTATTAACTCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp AAAAATACATTCCATTACACAGAATCCAAAGAAACAATGCTGCTAAGCCTTAGCAGATGGAGAGCGGTCTaGCGATGCTTGGTTAACTCA +
Preference number: 4 (lower is better)
Translates to: KNTFHYTESKETMLLSLSRWRAV*RCLVNS
Trigger: TGAGTTAACCAAGCATCGTCAGACCGCTCTCCATCT...GCTAAGGCTTAGCAGCATTGTTTCTTTGGATTCTGTGTAATGGAATGTATTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR TCA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACAGCCTGTCCCCAACCTTaGTCTTCAAATCACTGTACT +
Preference number: 4 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATACPQP*SSNHCT
Trigger: AGTACAGTGATTTGAAGATCAAGGTTGGGGACAGGC...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR GCA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACATTGAATGAGTCTGGCTaGAAAGCTATTCTCATCAAA +
Preference number: 4 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATLNESG*KAILIK
Trigger: TTTGATGAGAATAGCTTTGCAGCCAGACTCATTCAA...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CCA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACAAAAATGTTGACTCCTTaGTTATTATTCACCCCAAGG +
Preference number: 4 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATKMLTP*LLFTPR
Trigger: CCTTGGGGTGAATAATAACCAAGGAGTCAACATTTT...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GCTCAGAGGCCTTTGCTGAGCTGCTTCCTCTGCTGGGCTGGCAGGGGAGCTCTGGTTTGGATTGGCACCTaGCTGCAGGAGCTCTGCTGT +
Preference number: 5 (lower is better)
Translates to: AQRPLLSCFLCWAGRGALVWIGT*LQELCC
Trigger: ACAGCAGAGCTCCTGCAGCAAGGTGCCAATCCAAAC...CAGAGCTCCCCTGCCAGCCCAGCAGAGGAAGCAGCTCAGCAAAGGCCTCTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCATAGCTGGCCGGGGCCTTGGGCTGTTCAGCTCTGATGAGGCACAGCGCCACTGCAGAGGGGTCAACTaGGAAGCATCCTGGACTCTG +
Preference number: 5 (lower is better)
Translates to: LIAGRGLGLFSSDEAQRHCRGVN*EASWTL
Trigger: CAGAGTCCAGGATGCTTCCAAGTTGACCCCTCTGCA...GTGGCGCTGTGCCTCATCAGAGCTGAACAGCCCAAGGCCCCGGCCAGCTATGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCCCTGCTGTGGCAGCATaGACAAGGGCCCCGTTCTTA +
Preference number: 5 (lower is better)
Translates to: SSAAGRQLPALALGRRQAPAVAA*TRAPFL
Trigger: TAAGAACGGGGCCCTTGTCAATGCTGCCACAGCAGG...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS GCA 90 bp GGAGTCCTGCCCTTGCTATCCTGCATGTTGGGGTTGGCACCAGCCTaGAGGAGGGCCTCCGCAATCTGTGCCATCTCAGACATCACATCT +
Preference number: 5 (lower is better)
Translates to: GVLPLLSCMLGLAPA*RRASAICAISDITS
Trigger: AGATGTGATGTCTGAGATGGCACAGATTGCGGAGGCCCTCCTGCAGGCTGGTGCCAACCCCAACATGCAGGATAGCAAGGGCAGGACTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGTTGCTATCCTGCATGTaGGGGTTGGCACCAGCCTGC +
Preference number: 5 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDELLSCM*GLAPAC
Trigger: GCAGGCTGGTGCCAACCCCAACATGCAGGATAGCAA...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCAGTGTTGCTGCCGCGTaGAATGAGTCTGGCTGCAAA +
Preference number: 5 (lower is better)
Translates to: SSAAGRQLPALALGRRQASVAAA*NESGCK
Trigger: TTTGCAGCCAGACTCATTCAACGCGGCAGCAACACT...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCGCAGCTGGGCAGCGATaGTGTGCATGCCAGTCCATA +
Preference number: 5 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSAAGQR*CACQSI
Trigger: TATGGACTGGCATGCACACAATCGCTGCCCAGCTGC...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGAAATGCTTCTCCAACTaGGCCACCTCCTCTTCCGCC +
Preference number: 5 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDEKCFSN*ATSSSA
Trigger: GGCGGAAGAGGAGGTGGCCAAGTTGGAGAAGCATTT...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCATAGCTGGCCGGGGCCTTGGGCTGTTCAGCTCTGATGAGGCACAGCGCCACCAGGCAGTAGACTCATaGTTTTCATCAACGGCTCTA +
Preference number: 5 (lower is better)
Translates to: LIAGRGLGLFSSDEAQRHQAVDS*FSSTAL
Trigger: TAGAGCCGTTGATGAAAACAATGAGTCTACTGCCTG...GTGGCGCTGTGCCTCATCAGAGCTGAACAGCCCAAGGCCCCGGCCAGCTATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GTCCAGTCCAAGCTGGCTATCAGAACCACTGATGGAAGAGCATGTGATGGCATTTCCTGCATGTTGGGGTaGGCACCAGCCTGCAGGAGG +
Preference number: 5 (lower is better)
Translates to: VQSKLAIRTTDGRACDGISCMLG*APACRR
Trigger: CCTCCTGCAGGCTGGTGCCAACCCCAACATGCAGGA...AATGCCATCACATGCTCTTCCATCAGTGGTTCTGATAGCCAGCTTGGACTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCTGCTCTGAGGGCTCTGTTCTGAGTCAGCCCAGGCAGGGAGACTTTGTGAATAAAGGAGTCCTGCCCTaGCTATCCTGCATGTTGGGG +
Preference number: 5 (lower is better)
Translates to: LCSEGSVLSQPRQGDFVNKGVLP*LSCMLG
Trigger: CCCCAACATGCAGGATAGCAAGGGCAGGACTCCTTT...ATTCACAAAGTCTCCCTGCCTGGGCTGACTCAGAACAGAGCCCTCAGAGCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCGGAGTTTCTCCCCATTaGTTCCTGTGGTTGGCATGG +
Preference number: 5 (lower is better)
Translates to: EQAAAAGTKDLCFVASLIGVSPH*FLWLAW
Trigger: CCATGCCAACCACAGGAACAAATGGGGAGAAACTCC...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GAACAGGCGGCAGCAGCAGGAACCAAAGACCTATGCTTCGTAGCCTCGCTCATCTCTGCATCCTGTGCATaGACGTTGGCACCAAACTCC +
Preference number: 5 (lower is better)
Translates to: EQAAAAGTKDLCFVASLISASCA*TLAPNS
Trigger: GGAGTTTGGTGCCAACGTCAATGCACAGGATGCAGA...GATGAGCGAGGCTACGAAGCATAGGTCTTTGGTTCCTGCTGCTGCCGCCTGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCCCTTCTGCATCTGGTTaGTCCAGAGGATACTCAGGC +
Preference number: 5 (lower is better)
Translates to: GLQRQDAARREMRQLLGVPSASG*SRGYSG
Trigger: GCCTGAGTATCCTCTGGACAAACCAGATGCAGAAGG...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS TCA 90 bp CAGGGAGGTCTTCAAAGGGGTTTACAGACTGGTCTGAAGACACAGTaGTGTACTGGACGGCCAGCCAGAGTGCAGTGCTGCCTTCGTGAT +
Preference number: 5 (lower is better)
Translates to: QGGLQRGLQTGLKTQ*CTGRPARVQCCLRD
Trigger: ATCACGAAGGCAGCACTGCACTCTGGCTGGCCGTCCAGTACATCACTGTGTCTTCAGACCAGTCTGTAAACCCCTTTGAAGACCTCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS TCA 90 bp CCCATTCACCACAGGGAGGTCTTCAAAGGGGTTTACAGACTGGTCTaGAGACACAGTGATGTACTGGACGGCCAGCCAGAGTGCAGTGCT +
Preference number: 5 (lower is better)
Translates to: PIHHREVFKGVYRLV*RHSDVLDGQPECSA
Trigger: AGCACTGCACTCTGGCTGGCCGTCCAGTACATCACTGTGTCTTCAGACCAGTCTGTAAACCCCTTTGAAGACCTCCCTGTGGTGAATGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GCAGCGATTGTGTGCATGCCAGTCCATAATGCCAGGCCGAGAACAGTTTGGTCTAAATGCTTCTCCAACTaGGCCACCTCCTCTTCCGCC +
Preference number: 5 (lower is better)
Translates to: AAIVCMPVHNARPRTVWSKCFSN*ATSSSA
Trigger: GGCGGAAGAGGAGGTGGCCAAGTTGGAGAAGCATTT...AGACCAAACTGTTCTCGGCCTGGCATTATGGACTGGCATGCACACAATCGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR CAA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTTCCTGCATGTTGGGGTaGGCACCAGCCTGCAGGAGG +
Preference number: 5 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSSCMLG*APACRR
Trigger: CCTCCTGCAGGCTGGTGCCAACCCCAACATGCAGGA...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCCCTCTGTCTGTAAGTTaGGATTGGCACCTTGCTGCA +
Preference number: 5 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSPLSVS*DWHLAA
Trigger: TGCAGCAAGGTGCCAATCCAAACTTACAGACAGAGG...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGTGTCCTCCAGATTACTaGCCAAGGCAAGCCACAGTG +
Preference number: 5 (lower is better)
Translates to: LQRQDAARREMRQLLGVKCPPDY*PRQATV
Trigger: CACTGTGGCTTGCCTTGGCAAGTAATCTGGAGGACA...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp TTTCTTCCACCACTCAAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGAGCAGCACTGTGTaGCCTTCTGCATCTGGTTTG +
Preference number: 5 (lower is better)
Translates to: FLPPLKWQRPRTPKTGRSKSSTV*PSASGL
Trigger: CAAACCAGATGCAGAAGGCAACACAGTGCTGCTCTT...GCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTTGAGTGGTGGAAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS TCA 90 bp TTGGCCAGACTCCAGCTATCACTGCGGGCGGCCAAGACAAACTTGTaGGCACTGATGTGCCTGTCCCCAACCTTGATCTTCAAATCACTG +
Preference number: 5 (lower is better)
Translates to: LARLQLSLRAAKTNL*ALMCLSPTLIFKSL
Trigger: CAGTGATTTGAAGATCAAGGTTGGGGACAGGCACATCAGTGCTCACAAGTTTGTCTTGGCCGCCCGCAGTGATAGCTGGAGTCTGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp AAGTGGCAGCGACCGAGGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGAGCGAAGCATTGTCATaGTCACCTCAGGATTCGCAT +
Preference number: 5 (lower is better)
Translates to: KWQRPRTPKTGRSKTRDESEALS*SPQDSH
Trigger: ATGCGAATCCTGAGGTGACAATGACAATGCTTCGCT...CTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCCTCGGTCGCTGCCACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAGCGAAGCATTGTCATaGTCACCTCAGGATTCGCAT +
Preference number: 5 (lower is better)
Translates to: GLQRQDAARREMRQLLGVSEALS*SPQDSH
Trigger: ATGCGAATCCTGAGGTGACAATGACAATGCTTCGCT...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp TCTTCTGCCGCAGGAAGACAACTGCCAGCTCTTGCTCTGGGTAGGAGGCAGGCCAAGCTCCAGCCATTTTaGTCTACCATATCCACATCA +
Preference number: 5 (lower is better)
Translates to: SSAAGRQLPALALGRRQAKLQPF*STISTS
Trigger: TGATGTGGATATGGTAGACAAAAATGGCTGGAGCTT...GGCCTGCCTCCTACCCAGAGCAAGAGCTGGCAGTTGTCTTCCTGCGGCAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCATTGCTATCCTGCATGTaGGGGTTGGCACCAGCCTGC +
Preference number: 5 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPLLSCM*GLAPAC
Trigger: GCAGGCTGGTGCCAACCCCAACATGCAGGATAGCAA...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTACTCTGGAGTTCACATaGGCCTGGACACTGATCAGG +
Preference number: 5 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGTLEFT*AWTLIR
Trigger: CCTGATCAGTGTCCAGGCCAATGTGAACTCCAGAGT...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GGACTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCATTCTCCTTGTTTGCTaGTGCAGCCAAAAGAGTGCA +
Preference number: 5 (lower is better)
Translates to: GLQRQDAARREMRQLLGVILLVC*CSQKSA
Trigger: TGCACTCTTTTGGCTGCACAAGCAAACAAGGAGAAT...GACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CCAGTCCATAATGCCAGGCCGAGAACAGTTTGGTCTCTGGAATCCTTGAGGCTGATCACTGTACTGCTCTaGCTCATAGAGACCTGCCAC +
Preference number: 5 (lower is better)
Translates to: PVHNARPRTVWSLESLRLITVLL*LIETCH
Trigger: GTGGCAGGTCTCTATGAGCAAGAGCAGTACAGTGAT...CAGCCTCAAGGATTCCAGAGACCAAACTGTTCTCGGCCTGGCATTATGGACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR CAA 90 bp TATACAAACACGTGCCTGCAGTTATGGCCCAGCTGCTGCCACCTTGTCCTTGGTATCACTGTACTGCTCTaGCTCATAGAGACCTGCCAC +
Preference number: 5 (lower is better)
Translates to: YTNTCLQLWPSCCHLVLGITVLL*LIETCH
Trigger: GTGGCAGGTCTCTATGAGCAAGAGCAGTACAGTGAT...ACCAAGGACAAGGTGGCAGCAGCTGGGCCATAACTGCAGGCACGTGTTTGTATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGTGCCTGTCCCCAACCTaGATCTTCAAATCACTGTAC +
Preference number: 5 (lower is better)
Translates to: LQRQDAARREMRQLLGVKCLSPT*IFKSLY
Trigger: GTACAGTGATTTGAAGATCAAGGTTGGGGACAGGCA...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS TCA 90 bp TGCATTTCTCCAGGCCGCCCTACGTACTGTTTACACTGCAGCAGCTaGCTGAACACACAGTCGTTCCTGGCCATGATGGACAAGTGTAAA +
Preference number: 5 (lower is better)
Translates to: CISPGRPTYCLHCSS*LNTQSFLAMMDKCK
Trigger: TTTACACTTGTCCATCATGGCCAGGAACGACTGTGTGTTCAGTCAGCTGCTGCAGTGTAAACAGTACGTAGGGCGGCCTGGAGAAATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS CCA 90 bp CAGGATTCGCATCTGACAAGTCTATCTCCTCTGTGGAAGACAAATTaGCCAGACTCCAGCTATCACTGCGGGCGGCCAAGACAAACTTGT +
Preference number: 5 (lower is better)
Translates to: QDSHLTSLSPLWKTN*PDSSYHCGRPRQTC
Trigger: ACAAGTTTGTCTTGGCCGCCCGCAGTGATAGCTGGAGTCTGGCCAATTTGTCTTCCACAGAGGAGATAGACTTGTCAGATGCGAATCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GTCCAGTCCAAGCTGGCTATCAGAACCACTGATGGAAGAGCATGTGATGGCATTGTCTGTAAGTTTGGATaGGCACCTTGCTGCAGGAGC +
Preference number: 5 (lower is better)
Translates to: VQSKLAIRTTDGRACDGIVCKFG*APCCRS
Trigger: GCTCCTGCAGCAAGGTGCCAATCCAAACTTACAGAC...AATGCCATCACATGCTCTTCCATCAGTGGTTCTGATAGCCAGCTTGGACTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAAAGGAAGAGAGCGCTCTaGCTGTCCTGCCGCTGTATG +
Preference number: 5 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKERKRAL*LSCRCM
Trigger: CATACAGCGGCAGGACAGCAAGAGCGCTCTCTTCCT...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCAATGACGCTATGCTGGTaGCTGATGGCCACATGGACA +
Preference number: 5 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPMTLCW*LMATWT
Trigger: TGTCCATGTGGCCATCAGCAACCAGCATAGCGTCAT...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS CCA 90 bp TATTTCTTTGGACTGTACAATGCTACAAGGTGTAATGGGGTCTCCTaGGCTCCTGCTGTGGCAGCATTGACAAGGGCCCCGTTCTTAATG +
Preference number: 5 (lower is better)
Translates to: YFFGLYNATRCNGVS*APAVAALTRAPFLM
Trigger: CATTAAGAACGGGGCCCTTGTCAATGCTGCCACAGCAGGAGCCCAGGAGACCCCATTACACCTTGTAGCATTGTACAGTCCAAAGAAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCCAAAGACAGGACGCAGCAAGACGAGAGATGAGACAGCTGCTGGGTGTCAAGAAGCTCCAGCCATTTTaGTCTACCATATCCACATCA +
Preference number: 5 (lower is better)
Translates to: LQRQDAARREMRQLLGVKKLQPF*STISTS
Trigger: TGATGTGGATATGGTAGACAAAAATGGCTGGAGCTT...CTTGACACCCAGCAGCTGTCTCATCTCTCGTCTTGCTGCGTCCTGTCTTTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS TCA 90 bp GCTGCCGCGTTGAATGAGTCTGGCTGCAAAGCTATTCTCATCAAATaGTGTCCCATTCACCACAGGGAGGTCTTCAAAGGGGTTTACAGA +
Preference number: 5 (lower is better)
Translates to: AAALNESGCKAILIK*CPIHHREVFKGVYR
Trigger: TCTGTAAACCCCTTTGAAGACCTCCCTGTGGTGAATGGGACATCATTTGATGAGAATAGCTTTGCAGCCAGACTCATTCAACGCGGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS GCA 90 bp GATCTTTCAGCTCTAAATCTAATAATCCCACCCTCACAACCGCTTTaGATTTCTCCAGGCCGCCCTACGTACTGTTTACACTGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: DLSALNLIIPPSQPL*ISPGRPTYCLHCSS
Trigger: GCTGCTGCAGTGTAAACAGTACGTAGGGCGGCCTGGAGAAATGCAAAGCGGTTGTGAGGGTGGGATTATTAGATTTAGAGCTGAAAGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS-3UTR CAA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCAATGGCACGGCACAAGTaGGCATTCCCTTTCATGTAT +
Preference number: 5 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPMARHK*AFPFMY
Trigger: ATACATGAAAGGGAATGCCAACTTGTGCCGTGCCAT...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CCTCTCCTAAGCATTTGGCAGTTCAGCCACTTTTTCTCTTCTCCAGGTAAGGAACATTTGTTCCTGTGGTaGGCATGGGCACCACTAGTT +
Preference number: 5 (lower is better)
Translates to: PLLSIWQFSHFFSSPGKEHLFLW*AWAPLV
Trigger: AACTAGTGGTGCCCATGCCAACCACAGGAACAAATG...TTCCTTACCTGGAGAAGAGAAAAAGTGGCTGAACTGCCAAATGCTTAGGAGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GTCCAGTCCAAGCTGGCTATCAGAACCACTGATGGAAGAGCATGTGATGGCATTGATGGTTATAGGCAATaGCCATGTGCAGTGGTGTTT +
Preference number: 5 (lower is better)
Translates to: VQSKLAIRTTDGRACDGIDGYRQ*PCAVVF
Trigger: AAACACCACTGCACATGGCAATTGCCTATAACCATC...AATGCCATCACATGCTCTTCCATCAGTGGTTCTGATAGCCAGCTTGGACTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp AGCTTCCATGGTGTCAGACAGCTGATTCTGCATCAGCAGTCACATGTGCAACCACAAACCCGCACAGGCTaGTTCAGGTCAAACTTTATA +
Preference number: 5 (lower is better)
Translates to: SFHGVRQLILHQQSHVQPQTRTG*FRSNFI
Trigger: TATAAAGTTTGACCTGAACAAGCCTGTGCGGGTTTG...TGGTTGCACATGTGACTGCTGATGCAGAATCAGCTGTCTGACACCATGGAAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CCAGCAGTCCCCAGACTCCCTCACTGTGGAAAACCAATGTTGTCGGTTGTAAGATCTTCTCTCTCCACTTaGATAGCTTTATGTAATGGG +
Preference number: 5 (lower is better)
Translates to: PAVPRLPHCGKPMLSVVRSSLST*IALCNG
Trigger: CCCATTACATAAAGCTATCAAAGTGGAGAGAGAAGA...TCTTACAACCGACAACATTGGTTTTCCACAGTGAGGGAGTCTGGGGACTGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTTCTTCTCTCTCCACTTaGATAGCTTTATGTAATGGG +
Preference number: 5 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSSSLST*IALCNG
Trigger: CCCATTACATAAAGCTATCAAAGTGGAGAGAGAAGA...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACACCTGCTGTGGCAGCATaGACAAGGGCCCCGTTCTTA +
Preference number: 5 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATPAVAA*TRAPFL
Trigger: TAAGAACGGGGCCCTTGTCAATGCTGCCACAGCAGG...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp GTTTTCCCTTTTAGATTAGTGTGTGCTGAGGTCCAGTCCAAGCTGGCTATCAGACACCATGGAGGCTCTTaGGAGAGCATATCTAATAAT +
Preference number: 5 (lower is better)
Translates to: VFPFRLVCAEVQSKLAIRHHGGS*ESISNN
Trigger: ATTATTAGATATGCTCTCCAAAGAGCCTCCATGGTG...TCTGATAGCCAGCTTGGACTGGACCTCAGCACACACTAATCTAAAAGGGAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp TCACATTTGTCACGCAGGTTAAACTGGCCTGGTCCAACCAGTGAGACATCTAGTATAATAGGGATCTCCTaGGTTGAGCATTTATGGCAA +
Preference number: 5 (lower is better)
Translates to: SHLSRRLNWPGPTSETSSIIGIS*VEHLWQ
Trigger: TTGCCATAAATGCTCAACCAAGGAGATCCCTATTAT...ACTAGATGTCTCACTGGTTGGACCAGGCCAGTTTAACCTGCGTGACAAATGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS TCA 90 bp AATAAGCTCCAGCCATTTTTGTCTACCATATCCACATCAGCTTTATaGCTAACCAGAGTGGTGGCAATACTCTCTAGTCGCCGAGAAAGA +
Preference number: 5 (lower is better)
Translates to: NKLQPFLSTISTSAL*LTRVVAILSSRRER
Trigger: TCTTTCTCGGCGACTAGAGAGTATTGCCACCACTCTGGTTAGTCATAAAGCTGATGTGGATATGGTAGACAAAAATGGCTGGAGCTTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp AAAAATACATTCCATTACACAGAATCCAAAGAAACAATGCTGCTAAGCCTTAGCAAAGGAGTCCTGCCCTaGCTATCCTGCATGTTGGGG +
Preference number: 5 (lower is better)
Translates to: KNTFHYTESKETMLLSLSKGVLP*LSCMLG
Trigger: CCCCAACATGCAGGATAGCAAGGGCAGGACTCCTTT...GCTAAGGCTTAGCAGCATTGTTTCTTTGGATTCTGTGTAATGGAATGTATTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACATCTGACATGGTGTCATaGATAGAGGCTCCGGAGCCC +
Preference number: 5 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATSDMVS*IEAPEP
Trigger: GGGCTCCGGAGCCTCTATCAATGACACCATGTCAGA...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACAGAGTCTGTCCATCCCTaGCTTCCTCTTCTCCTTCTC +
Preference number: 5 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATESVHP*LPLLLL
Trigger: GAGAAGGAGAAGAGGAAGCAAGGGATGGACAGACTC...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACATGCCTGTCCCCAACCTaGATCTTCAAATCACTGTAC +
Preference number: 5 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATCLSPT*IFKSLY
Trigger: GTACAGTGATTTGAAGATCAAGGTTGGGGACAGGCA...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACATCCTGTGCATTGACGTaGGCACCAAACTCCAAAAGA +
Preference number: 5 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATSCALT*APNSKR
Trigger: TCTTTTGGAGTTTGGTGCCAACGTCAATGCACAGGA...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACAGTTAACTCATTCACCTaGGCTCCTGCAAGAAGCAGA +
Preference number: 5 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATVNSFT*APARSR
Trigger: TCTGCTTCTTGCAGGAGCCAAGGTGAATGAGTTAAC...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACAACATCAAAGCAAATGTaGCAAACCCGCACAGGCTTG +
Preference number: 5 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATTSKQM*QTRTGL
Trigger: CAAGCCTGTGCGGGTTTGCAACATTTGCTTTGATGT...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp AAAAATACATTCCATTACACAGAATCCAAAGAAACAATGCTGCTAAGCCTTAGCATTCTCCTTGTTTGCTaGTGCAGCCAAAAGAGTGCA +
Preference number: 5 (lower is better)
Translates to: KNTFHYTESKETMLLSLSILLVC*CSQKSA
Trigger: TGCACTCTTTTGGCTGCACAAGCAAACAAGGAGAAT...GCTAAGGCTTAGCAGCATTGTTTCTTTGGATTCTGTGTAATGGAATGTATTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACAGCTGCTGCATTTTCTTaGCCATACTGTCCCAAAATG +
Preference number: 5 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATAAAFS*PYCPKM
Trigger: CATTTTGGGACAGTATGGCAAAGAAAATGCAGCAGC...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS-3UTR CAA 90 bp CTCAGCACATTTTATACATATTTAGGCAGTAAGATGTCTAACTCTACAGCAACACTGATGAATGACTCGTaGCTATTCTCCTTGTTTGCT +
Preference number: 5 (lower is better)
Translates to: LSTFYTYLGSKMSNSTATLMNDS*LFSLFA
Trigger: AGCAAACAAGGAGAATAGCAACGAGTCATTCATCAG...TGTTGCTGTAGAGTTAGACATCTTACTGCCTAAATATGTATAAAATGTGCTGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS CAA 72 bp AAAGGAGTCCTGCCCTTGCTATCCTGCATGTTGGGGTaGGCACCAGCCTGCAGGAGGGCCTCCGCAATCTGT +
Preference number: 6 (lower is better)
Translates to: KGVLPLLSCMLG*APACRRASAIC
Trigger: ACAGATTGCGGAGGCCCTCCTGCAGGCTGGTGCCAACCCCAACATGCAGGATAGCAAGGGCAGGACTCCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS CAA 72 bp AAGTGTAAAGGAGTCCTGCCCTTGCTATCCTGCATGTaGGGGTTGGCACCAGCCTGCAGGAGGGCCTCCGCA +
Preference number: 6 (lower is better)
Translates to: KCKGVLPLLSCM*GLAPACRRASA
Trigger: TGCGGAGGCCCTCCTGCAGGCTGGTGCCAACCCCAACATGCAGGATAGCAAGGGCAGGACTCCTTTACACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS CCA 72 bp GGACTGTACAATGCTACAAGGTGTAATGGGGTCTCCTaGGCTCCTGCTGTGGCAGCATTGACAAGGGCCCCG +
Preference number: 6 (lower is better)
Translates to: GLYNATRCNGVS*APAVAALTRAP
Trigger: CGGGGCCCTTGTCAATGCTGCCACAGCAGGAGCCCAGGAGACCCCATTACACCTTGTAGCATTGTACAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS TCA 72 bp CCAGGCCGCCCTACGTACTGTTTACACTGCAGCAGCTaGCTGAACACACAGTCGTTCCTGGCCATGATGGAC +
Preference number: 6 (lower is better)
Translates to: PGRPTYCLHCSS*LNTQSFLAMMD
Trigger: GTCCATCATGGCCAGGAACGACTGTGTGTTCAGTCAGCTGCTGCAGTGTAAACAGTACGTAGGGCGGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS TCA 72 bp CTCCAGCTATCACTGCGGGCGGCCAAGACAAACTTGTaGGCACTGATGTGCCTGTCCCCAACCTTGATCTTC +
Preference number: 6 (lower is better)
Translates to: LQLSLRAAKTNL*ALMCLSPTLIF
Trigger: GAAGATCAAGGTTGGGGACAGGCACATCAGTGCTCACAAGTTTGTCTTGGCCGCCCGCAGTGATAGCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS TCA 72 bp CTTCAAAGGGGTTTACAGACTGGTCTGAAGACACAGTaGTGTACTGGACGGCCAGCCAGAGTGCAGTGCTGC +
Preference number: 6 (lower is better)
Translates to: LQRGLQTGLKTQ*CTGRPARVQCC
Trigger: GCAGCACTGCACTCTGGCTGGCCGTCCAGTACATCACTGTGTCTTCAGACCAGTCTGTAAACCCCTTTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS TCA 72 bp CACAGGGAGGTCTTCAAAGGGGTTTACAGACTGGTCTaGAGACACAGTGATGTACTGGACGGCCAGCCAGAG +
Preference number: 6 (lower is better)
Translates to: HREVFKGVYRLV*RHSDVLDGQPE
Trigger: CTCTGGCTGGCCGTCCAGTACATCACTGTGTCTTCAGACCAGTCTGTAAACCCCTTTGAAGACCTCCCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS CCA 72 bp TTCACCACAGGGAGGTCTTCAAAGGGGTTTACAGACTaGTCTGAAGACACAGTGATGTACTGGACGGCCAGC +
Preference number: 6 (lower is better)
Translates to: FTTGRSSKGFTD*SEDTVMYWTAS
Trigger: GCTGGCCGTCCAGTACATCACTGTGTCTTCAGACCAGTCTGTAAACCCCTTTGAAGACCTCCCTGTGGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS CAA 90 bp TCAGGATTCGCATCTGACAAGTCTATCTCCTCTGTGGAAGACAAATaGGCCAGACTCCAGCTATCACTGCGGGCGGCCAAGACAAACTTG +
Preference number: 6 (lower is better)
Translates to: SGFASDKSISSVEDK*ARLQLSLRAAKTNL
Trigger: CAAGTTTGTCTTGGCCGCCCGCAGTGATAGCTGGAGTCTGGCCAATTTGTCTTCCACAGAGGAGATAGACTTGTCAGATGCGAATCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS CAA 72 bp GCCACTATGGCCAGCAAGCGGCTGATGAATGACTCGTaGCTATTCTCCTTGTTTGCTTGTGCAGCCAAAAGA +
Preference number: 6 (lower is better)
Translates to: ATMASKRLMNDS*LFSLFACAAKR
Trigger: TCTTTTGGCTGCACAAGCAAACAAGGAGAATAGCAACGAGTCATTCATCAGCCGCTTGCTGGCCATAGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS CAA 90 bp CCGCAATCTGTGCCATCTCAGACATCACATCTGCTGAGTATTTCTTaGGACTGTACAATGCTACAAGGTGTAATGGGGTCTCCTGGGCTC +
Preference number: 6 (lower is better)
Translates to: PQSVPSQTSHLLSIS*DCTMLQGVMGSPGL
Trigger: GAGCCCAGGAGACCCCATTACACCTTGTAGCATTGTACAGTCCAAAGAAATACTCAGCAGATGTGATGTCTGAGATGGCACAGATTGCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS GCA 72 bp GCTCTAAATCTAATAATCCCACCCTCACAACCGCTTTaGATTTCTCCAGGCCGCCCTACGTACTGTTTACAC +
Preference number: 6 (lower is better)
Translates to: ALNLIIPPSQPL*ISPGRPTYCLH
Trigger: GTGTAAACAGTACGTAGGGCGGCCTGGAGAAATGCAAAGCGGTTGTGAGGGTGGGATTATTAGATTTAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS TCA 72 bp GCGAAGCATTGTCATTGTCACCTCAGGATTCGCATCTaGCAAGTCTATCTCCTCTGTGGAAGACAAATTGGC +
Preference number: 6 (lower is better)
Translates to: AKHCHCHLRIRI*QVYLLCGRQIG
Trigger: GCCAATTTGTCTTCCACAGAGGAGATAGACTTGTCAGATGCGAATCCTGAGGTGACAATGACAATGCTTCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS CAA 72 bp AGCTCTAAATCTAATAATCCCACCCTCACAACCGCTTaGCATTTCTCCAGGCCGCCCTACGTACTGTTTACA +
Preference number: 6 (lower is better)
Translates to: SSKSNNPTLTTA*HFSRPPYVLFT
Trigger: TGTAAACAGTACGTAGGGCGGCCTGGAGAAATGCAAAGCGGTTGTGAGGGTGGGATTATTAGATTTAGAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127610.8
CDS CAA 90 bp ACTATGGCCAGCAAGCGGCTGATGAATGACTCGTTGCTATTCTCCTaGTTTGCTTGTGCAGCCAAAAGAGTGCATCTTTTCTCTGTTTCT +
Preference number: 6 (lower is better)
Translates to: TMASKRLMNDSLLFS*FACAAKRVHLFSVS
Trigger: AGAAACAGAGAAAAGATGCACTCTTTTGGCTGCACAAGCAAACAAGGAGAATAGCAACGAGTCATTCATCAGCCGCTTGCTGGCCATAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS TCA 72 bp CGAGAAAGAGCCAGATCTAACGCAAGATCTCCATTATaGTCTGTTTCGTTAAGCTTCCCAGGTAGCTGGGAA +
Preference number: 6 (lower is better)
Translates to: RERARSNARSPL*SVSLSFPGSWE
Trigger: TTCCCAGCTACCTGGGAAGCTTAACGAAACAGATCATAATGGAGATCTTGCGTTAGATCTGGCTCTTTCTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS TCA 72 bp TTCAGCTCTAAATCTAATTGTTTACACTGCAGCAGCTaGCTGAACACACAGTCGTTCCTGGCCATGATGGAC +
Preference number: 6 (lower is better)
Translates to: FSSKSNCLHCSS*LNTQSFLAMMD
Trigger: GTCCATCATGGCCAGGAACGACTGTGTGTTCAGTCAGCTGCTGCAGTGTAAACAATTAGATTTAGAGCTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155998.2
CDS CAA 72 bp AGCAAGCGGCTGATGAATGACTCGTTGCTATTCTCCTaGTTTGCTTGTGCAGCCAAAAGAGTGCATCTTTTC +
Preference number: 6 (lower is better)
Translates to: SKRLMNDSLLFS*FACAAKRVHLF
Trigger: GAAAAGATGCACTCTTTTGGCTGCACAAGCAAACAAGGAGAATAGCAACGAGTCATTCATCAGCCGCTTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS TCA 72 bp CAGCCATTTTTGTCTACCATATCCACATCAGCTTTATaGCTAACCAGAGTGGTGGCAATACTCTCTAGTCGC +
Preference number: 6 (lower is better)
Translates to: QPFLSTISTSAL*LTRVVAILSSR
Trigger: GCGACTAGAGAGTATTGCCACCACTCTGGTTAGTCATAAAGCTGATGTGGATATGGTAGACAAAAATGGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS CAA 72 bp CTAACTCATCCGTATAGATCCAGCGAAGCATTGTCATaGTCACCTCAGGATTCGCATCTGACAAGTCTATCT +
Preference number: 6 (lower is better)
Translates to: LTHPYRSSEALS*SPQDSHLTSLS
Trigger: AGATAGACTTGTCAGATGCGAATCCTGAGGTGACAATGACAATGCTTCGCTGGATCTATACGGATGAGTTAG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2
CDS TCA 72 bp TACTCTGTCTTGGATTTGATCATTTTGTATAACAACTaGGCACTCAGGCTACTGAAGTCCTCCTTTCGCAAG +
Preference number: 6 (lower is better)
Translates to: YSVLDLIILYNN*ALRLLKSSFRK
Trigger: CTTGCGAAAGGAGGACTTCAGTAGCCTGAGTGCTCAGTTGTTATACAAAATGATCAAATCCAAGACAGAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127610.8
ENSMUST00000155998.2