RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANKDD1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066510

Ensembl transcript IDs: ENSMUST00000061766.6, ENSMUST00000217646.2

Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGCCACGAGGCCCTCGAACAGTGCTTTGCTGGGGTTCTCCCCAGCTaGGGCCACACCATGCAGCCAGATGAGCAGCATCCGGTGACCATG +
Preference number: 5 (lower is better)
Translates to: GHEALEQCFAGVLPS*GHTMQPDEQHPVTM
Trigger: CATGGTCACCGGATGCTGCTCATCTGGCTGCATGGTGTGGCCGCAGCTGGGGAGAACCCCAGCAAAGCACTGTTCGAGGGCCTCGTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp GCCCTGCTTGTCAGCCACATTTGTGCACCCTCCTGCCTTAATGAGTaGCCGGGACAGGTCCTCAGAGCCACCGAGGGCTGCGTAGTGGAG +
Preference number: 5 (lower is better)
Translates to: ALLVSHICAPSCLNE*PGQVLRATEGCVVE
Trigger: CTCCACTACGCAGCCCTCGGTGGCTCTGAGGACCTGTCCCGGGCACTCATTAAGGCAGGAGGGTGCACAAATGTGGCTGACAAGCAGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 90 bp AGCCACCGAGGGCTGCGTAGTGGAGGCAGCTCAGCCTTTTCTGGGTaGGGGCATTCACGTTGCTCCCAGCACCGAGGAGAAGCATCACAC +
Preference number: 5 (lower is better)
Translates to: SHRGLRSGGSSAFSG*GHSRCSQHRGEASH
Trigger: GTGTGATGCTTCTCCTCGGTGCTGGGAGCAACGTGAATGCCCTCACCCAGAAAAGGCTGAGCTGCCTCCACTACGCAGCCCTCGGTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp GCTACATCCTGCCAGGCGTGCTCAGCGGCAAGGTGGAGGGGAGTCTaGCGCCTAATGTCCACTGCGTCCAGATCACTGTGGCCATCTATG +
Preference number: 5 (lower is better)
Translates to: ATSCQACSAARWRGV*RLMSTASRSLWPSM
Trigger: CATAGATGGCCACAGTGATCTGGACGCAGTGGACATTAGGCGGCAGACTCCCCTCCACCTTGCCGCTGAGCACGCCTGGCAGGATGTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 90 bp TTCACGTTGCTCCCAGCACCGAGGAGAAGCATCACACAGTCAGCATaGATCCCTTCAGCGGCTGCATGCAGAGCCGTCAGGCCCTCCGTG +
Preference number: 5 (lower is better)
Translates to: FTLLPAPRRSITQSA*IPSAAACRAVRPSV
Trigger: CACGGAGGGCCTGACGGCTCTGCATGCAGCCGCTGAAGGGATCCATGCTGACTGTGTGATGCTTCTCCTCGGTGCTGGGAGCAACGTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp ACAAGTCTCTGTAGCACATCCACATGGCCCTGGCTGGCAGCCAGGTaGAGGGCCGTGTTCCCACCCTTGTCCTTGACACTGTGGTCACAG +
Preference number: 5 (lower is better)
Translates to: TSLCSTSTWPWLAAR*RAVFPPLSLTLWSQ
Trigger: CTGTGACCACAGTGTCAAGGACAAGGGTGGGAACACGGCCCTGCACCTGGCTGCCAGCCAGGGCCATGTGGATGTGCTACAGAGACTTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 90 bp AGAAGCATATCGGCTACATCCTGCCAGGCGTGCTCAGCGGCAAGGTaGAGGGGAGTCTGCCGCCTAATGTCCACTGCGTCCAGATCACTG +
Preference number: 5 (lower is better)
Translates to: RSISATSCQACSAAR*RGVCRLMSTASRSL
Trigger: CAGTGATCTGGACGCAGTGGACATTAGGCGGCAGACTCCCCTCCACCTTGCCGCTGAGCACGCCTGGCAGGATGTAGCCGATATGCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp TCAGCTCCAGCAATGAGAAGCATATCGGCTACATCCTGCCAGGCGTaGTCAGCGGCAAGGTGGAGGGGAGTCTGCCGCCTAATGTCCACT +
Preference number: 5 (lower is better)
Translates to: SAPAMRSISATSCQA*SAARWRGVCRLMST
Trigger: AGTGGACATTAGGCGGCAGACTCCCCTCCACCTTGCCGCTGAGCACGCCTGGCAGGATGTAGCCGATATGCTTCTCATTGCTGGAGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp AGGCTTAAGTCAGCTCCAGCAATGAGAAGCATATCGGCTACATCCTaGCAGGCGTGCTCAGCGGCAAGGTGGAGGGGAGTCTGCCGCCTA +
Preference number: 5 (lower is better)
Translates to: RLKSAPAMRSISATS*QACSAARWRGVCRL
Trigger: TAGGCGGCAGACTCCCCTCCACCTTGCCGCTGAGCACGCCTGGCAGGATGTAGCCGATATGCTTCTCATTGCTGGAGCTGACTTAAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 90 bp ACGAGGAAGTCCAGAGCATCCAGCTGTCCGTGCTCAGCCGCTCTGTaGAACGCTGTTCTTCCCAGCTTGTCTGCATGGTCCAAGGCCACA +
Preference number: 5 (lower is better)
Translates to: TRKSRASSCPCSAAL*NAVLPSLSAWSKAT
Trigger: TGTGGCCTTGGACCATGCAGACAAGCTGGGAAGAACAGCGTTTCACAGAGCGGCTGAGCACGGACAGCTGGATGCTCTGGACTTCCTCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp AGGAGAAGCATCACACAGTCAGCATGGATCCCTTCAGCGGCTGCATaGAGAGCCGTCAGGCCCTCCGTGTTCTGTTCTTCCAGATCGAGC +
Preference number: 5 (lower is better)
Translates to: RRSITQSAWIPSAAA*RAVRPSVFCSSRSS
Trigger: GCTCGATCTGGAAGAACAGAACACGGAGGGCCTGACGGCTCTGCATGCAGCCGCTGAAGGGATCCATGCTGACTGTGTGATGCTTCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp ACCGAGGAGAAGCATCACACAGTCAGCATGGATCCCTTCAGCGGCTaGATGCAGAGCCGTCAGGCCCTCCGTGTTCTGTTCTTCCAGATC +
Preference number: 5 (lower is better)
Translates to: TEEKHHTVSMDPFSG*MQSRQALRVLFFQI
Trigger: GATCTGGAAGAACAGAACACGGAGGGCCTGACGGCTCTGCATGCAGCCGCTGAAGGGATCCATGCTGACTGTGTGATGCTTCTCCTCGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 90 bp TGGAGGGGAGTCTGCCGCCTAATGTCCACTGCGTCCAGATCACTGTaGCCATCTATGAGGAGCTGGACAAGGCCAGGGAAGTTGTGCTTC +
Preference number: 5 (lower is better)
Translates to: WRGVCRLMSTASRSL*PSMRSWTRPGKLCF
Trigger: GAAGCACAACTTCCCTGGCCTTGTCCAGCTCCTCATAGATGGCCACAGTGATCTGGACGCAGTGGACATTAGGCGGCAGACTCCCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 90 bp GATCTGCACAATCTGCAAGTGGCCAAACCAGGCAGACAGGAGGAGTaGGTTCATTCCAAACGAGTCCACGTCGTCCACAGCAGCCCCACG +
Preference number: 5 (lower is better)
Translates to: DLHNLQVAKPGRQEE*VHSKRVHVVHSSPT
Trigger: CGTGGGGCTGCTGTGGACGACGTGGACTCGTTTGGAATGAACTCACTCCTCCTGTCTGCCTGGTTTGGCCACTTGCAGATTGTGCAGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp TCACTGTGGCCATCTATGAGGAGCTGGACAAGGCCAGGGAAGTTGTaGTTCACAGCAAGGTGCATAGGAGTGGTGCCCTGCTTGTCAGCC +
Preference number: 5 (lower is better)
Translates to: SLWPSMRSWTRPGKL*FTARCIGVVPCLSA
Trigger: GGCTGACAAGCAGGGCACCACTCCTATGCACCTTGCTGTGAAGCACAACTTCCCTGGCCTTGTCCAGCTCCTCATAGATGGCCACAGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp TCCTTGCTTTCACAGTGGACCTTGGCCCCAGCATTGACCAGGATCTaGACAATCTGCAAGTGGCCAAACCAGGCAGACAGGAGGAGTGAG +
Preference number: 5 (lower is better)
Translates to: SLLSQWTLAPALTRI*TICKWPNQADRRSE
Trigger: CTCACTCCTCCTGTCTGCCTGGTTTGGCCACTTGCAGATTGTGCAGATCCTGGTCAATGCTGGGGCCAAGGTCCACTGTGAAAGCAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp CCAGGGAAGTTGTGCTTCACAGCAAGGTGCATAGGAGTGGTGCCCTaGTTGTCAGCCACATTTGTGCACCCTCCTGCCTTAATGAGTGCC +
Preference number: 5 (lower is better)
Translates to: PGKLCFTARCIGVVP*LSATFVHPPALMSA
Trigger: GGCACTCATTAAGGCAGGAGGGTGCACAAATGTGGCTGACAAGCAGGGCACCACTCCTATGCACCTTGCTGTGAAGCACAACTTCCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp ATGAGGAGCTGGACAAGGCCAGGGAAGTTGTGCTTCACAGCAAGGTaGATAGGAGTGGTGCCCTGCTTGTCAGCCACATTTGTGCACCCT +
Preference number: 5 (lower is better)
Translates to: MRSWTRPGKLCFTAR*IGVVPCLSATFVHP
Trigger: AGGGTGCACAAATGTGGCTGACAAGCAGGGCACCACTCCTATGCACCTTGCTGTGAAGCACAACTTCCCTGGCCTTGTCCAGCTCCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 90 bp TCGTGCCCAGCACCTGCAGCCCAGTGTAGGGCCACTCTGCCCACATaGTTTCTAGCCCTGATGTTAACTCTCTTCTCAAACAGCTCCTTC +
Preference number: 5 (lower is better)
Translates to: SCPAPAAQCRATLPT*FLALMLTLFSNSSF
Trigger: GAAGGAGCTGTTTGAGAAGAGAGTTAACATCAGGGCTAGAAACCATGTGGGCAGAGTGGCCCTACACTGGGCTGCAGGTGCTGGGCACGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 90 bp CTGATGTTAACTCTCTTCTCAAACAGCTCCTTCATCCTCTCCACCTaGTTCCAGCGGGAGGCCTCATGGAGCTGTCTCTCCAGGGGAAGC +
Preference number: 5 (lower is better)
Translates to: LMLTLFSNSSFILST*FQREASWSCLSRGS
Trigger: GCTTCCCCTGGAGAGACAGCTCCATGAGGCCTCCCGCTGGAATCAGGTGGAGAGGATGAAGGAGCTGTTTGAGAAGAGAGTTAACATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 90 bp TCTAGGTCTTCCATGACGAAGGCCAGCACAGGCACGTGGCCTTTCTaGGCAGCACAGTGTAGTAAGGTCAGGCCATCCTTGCTTTCACAG +
Preference number: 5 (lower is better)
Translates to: SRSSMTKASTGTWPF*AAQCSKVRPSLLSQ
Trigger: CTGTGAAAGCAAGGATGGCCTGACCTTACTACACTGTGCTGCTCAGAAAGGCCACGTGCCTGTGCTGGCCTTCGTCATGGAAGACCTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 90 bp TCACAGTGGACCTTGGCCCCAGCATTGACCAGGATCTGCACAATCTaGAAGTGGCCAAACCAGGCAGACAGGAGGAGTGAGTTCATTCCA +
Preference number: 5 (lower is better)
Translates to: SQWTLAPALTRICTI*KWPNQADRRSEFIP
Trigger: TGGAATGAACTCACTCCTCCTGTCTGCCTGGTTTGGCCACTTGCAGATTGTGCAGATCCTGGTCAATGCTGGGGCCAAGGTCCACTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 90 bp TGGACCTTGGCCCCAGCATTGACCAGGATCTGCACAATCTGCAAGTaGCCAAACCAGGCAGACAGGAGGAGTGAGTTCATTCCAAACGAG +
Preference number: 5 (lower is better)
Translates to: WTLAPALTRICTICK*PNQADRRSEFIPNE
Trigger: CTCGTTTGGAATGAACTCACTCCTCCTGTCTGCCTGGTTTGGCCACTTGCAGATTGTGCAGATCCTGGTCAATGCTGGGGCCAAGGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 90 bp CTAATGTCCACTGCGTCCAGATCACTGTGGCCATCTATGAGGAGCTaGACAAGGCCAGGGAAGTTGTGCTTCACAGCAAGGTGCATAGGA +
Preference number: 5 (lower is better)
Translates to: LMSTASRSLWPSMRS*TRPGKLCFTARCIG
Trigger: TCCTATGCACCTTGCTGTGAAGCACAACTTCCCTGGCCTTGTCCAGCTCCTCATAGATGGCCACAGTGATCTGGACGCAGTGGACATTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 90 bp CTGTTTTTCCTTGCTTATCTCTCAGGCTTAAGTCAGCTCCAGCAATaGGAAGCATATCGGCTACATCCTGCCAGGCGTGCTCAGCGGCAA +
Preference number: 5 (lower is better)
Translates to: LFFLAYLSGLSQLQQ*EAYRLHPARRAQRQ
Trigger: TTGCCGCTGAGCACGCCTGGCAGGATGTAGCCGATATGCTTCTCATTGCTGGAGCTGACTTAAGCCTGAGAGATAAGCAAGGAAAAACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp GAGTGCCCGGGACAGGTCCTCAGAGCCACCGAGGGCTaGGTAGTGGAGGCAGCTCAGCCTTTTCTGGGTGAG +
Preference number: 6 (lower is better)
Translates to: ECPGQVLRATEG*VVEAAQPFLGE
Trigger: CTCACCCAGAAAAGGCTGAGCTGCCTCCACTACGCAGCCCTCGGTGGCTCTGAGGACCTGTCCCGGGCACTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp GTCTCTCCTGCCAATGGCCACGAGGCCCTCGAACAGTaGTTTGCTGGGGTTCTCCCCAGCTGCGGCCACACC +
Preference number: 6 (lower is better)
Translates to: VSPANGHEALEQ*FAGVLPSCGHT
Trigger: GGTGTGGCCGCAGCTGGGGAGAACCCCAGCAAAGCACTGTTCGAGGGCCTCGTGGCCATTGGCAGGAGAGAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 72 bp TCGGCTACATCCTGCCAGGCGTGCTCAGCGGCAAGGTaGAGGGGAGTCTGCCGCCTAATGTCCACTGCGTCC +
Preference number: 6 (lower is better)
Translates to: SATSCQACSAAR*RGVCRLMSTAS
Trigger: GGACGCAGTGGACATTAGGCGGCAGACTCCCCTCCACCTTGCCGCTGAGCACGCCTGGCAGGATGTAGCCGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CAA 90 bp ACATGGCCCTGGCTGGCAGCCAGGTGCAGGGCCGTGTTCCCACCCTaGTCCTTGACACTGTGGTCACAGCCAGAGCCCACGAGGAAGTCC +
Preference number: 6 (lower is better)
Translates to: TWPWLAARCRAVFPP*SLTLWSQPEPTRKS
Trigger: GGACTTCCTCGTGGGCTCTGGCTGTGACCACAGTGTCAAGGACAAGGGTGGGAACACGGCCCTGCACCTGGCTGCCAGCCAGGGCCATGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp TGCCAGGCGTGCTCAGCGGCAAGGTGGAGGGGAGTCTaGCGCCTAATGTCCACTGCGTCCAGATCACTGTGG +
Preference number: 6 (lower is better)
Translates to: CQACSAARWRGV*RLMSTASRSLW
Trigger: CCACAGTGATCTGGACGCAGTGGACATTAGGCGGCAGACTCCCCTCCACCTTGCCGCTGAGCACGCCTGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp GCCCTCGAACAGTGCTTTGCTGGGGTTCTCCCCAGCTaGGGCCACACCATGCAGCCAGATGAGCAGCATCCG +
Preference number: 6 (lower is better)
Translates to: ALEQCFAGVLPS*GHTMQPDEQHP
Trigger: CGGATGCTGCTCATCTGGCTGCATGGTGTGGCCGCAGCTGGGGAGAACCCCAGCAAAGCACTGTTCGAGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp GTCAGCCACATTTGTGCACCCTCCTGCCTTAATGAGTaGCCGGGACAGGTCCTCAGAGCCACCGAGGGCTGC +
Preference number: 6 (lower is better)
Translates to: VSHICAPSCLNE*PGQVLRATEGC
Trigger: GCAGCCCTCGGTGGCTCTGAGGACCTGTCCCGGGCACTCATTAAGGCAGGAGGGTGCACAAATGTGGCTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp GGTGCCCTGCTTGTCAGCCACATTTGTGCACCCTCCTaGCTTAATGAGTGCCCGGGACAGGTCCTCAGAGCC +
Preference number: 6 (lower is better)
Translates to: GALLVSHICAPS*LNECPGQVLRA
Trigger: GGCTCTGAGGACCTGTCCCGGGCACTCATTAAGGCAGGAGGGTGCACAAATGTGGCTGACAAGCAGGGCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp GCAATGAGAAGCATATCGGCTACATCCTGCCAGGCGTaGTCAGCGGCAAGGTGGAGGGGAGTCTGCCGCCTA +
Preference number: 6 (lower is better)
Translates to: AMRSISATSCQA*SAARWRGVCRL
Trigger: TAGGCGGCAGACTCCCCTCCACCTTGCCGCTGAGCACGCCTGGCAGGATGTAGCCGATATGCTTCTCATTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 72 bp CTCCCAGCACCGAGGAGAAGCATCACACAGTCAGCATaGATCCCTTCAGCGGCTGCATGCAGAGCCGTCAGG +
Preference number: 6 (lower is better)
Translates to: LPAPRRSITQSA*IPSAAACRAVR
Trigger: CCTGACGGCTCTGCATGCAGCCGCTGAAGGGATCCATGCTGACTGTGTGATGCTTCTCCTCGGTGCTGGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp GGCAAGGTGGAGGGGAGTCTGCCGCCTAATGTCCACTaGGTCCAGATCACTGTGGCCATCTATGAGGAGCTG +
Preference number: 6 (lower is better)
Translates to: GKVEGSLPPNVH*VQITVAIYEEL
Trigger: CAGCTCCTCATAGATGGCCACAGTGATCTGGACGCAGTGGACATTAGGCGGCAGACTCCCCTCCACCTTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp TCAGCTCCAGCAATGAGAAGCATATCGGCTACATCCTaGCAGGCGTGCTCAGCGGCAAGGTGGAGGGGAGTC +
Preference number: 6 (lower is better)
Translates to: SAPAMRSISATS*QACSAARWRGV
Trigger: GACTCCCCTCCACCTTGCCGCTGAGCACGCCTGGCAGGATGTAGCCGATATGCTTCTCATTGCTGGAGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 72 bp TCCAGAGCATCCAGCTGTCCGTGCTCAGCCGCTCTGTaGAACGCTGTTCTTCCCAGCTTGTCTGCATGGTCC +
Preference number: 6 (lower is better)
Translates to: SRASSCPCSAAL*NAVLPSLSAWS
Trigger: GGACCATGCAGACAAGCTGGGAAGAACAGCGTTTCACAGAGCGGCTGAGCACGGACAGCTGGATGCTCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp ATCACACAGTCAGCATGGATCCCTTCAGCGGCTGCATaGAGAGCCGTCAGGCCCTCCGTGTTCTGTTCTTCC +
Preference number: 6 (lower is better)
Translates to: ITQSAWIPSAAA*RAVRPSVFCSS
Trigger: GGAAGAACAGAACACGGAGGGCCTGACGGCTCTGCATGCAGCCGCTGAAGGGATCCATGCTGACTGTGTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp AAGCATCACACAGTCAGCATGGATCCCTTCAGCGGCTaGATGCAGAGCCGTCAGGCCCTCCGTGTTCTGTTC +
Preference number: 6 (lower is better)
Translates to: KHHTVSMDPFSG*MQSRQALRVLF
Trigger: GAACAGAACACGGAGGGCCTGACGGCTCTGCATGCAGCCGCTGAAGGGATCCATGCTGACTGTGTGATGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 72 bp GTCTGCCGCCTAATGTCCACTGCGTCCAGATCACTGTaGCCATCTATGAGGAGCTGGACAAGGCCAGGGAAG +
Preference number: 6 (lower is better)
Translates to: VCRLMSTASRSL*PSMRSWTRPGK
Trigger: CTTCCCTGGCCTTGTCCAGCTCCTCATAGATGGCCACAGTGATCTGGACGCAGTGGACATTAGGCGGCAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CAA 90 bp GGGAAGTTGTGCTTCACAGCAAGGTGCATAGGAGTGGTGCCCTGCTaGTCAGCCACATTTGTGCACCCTCCTGCCTTAATGAGTGCCCGG +
Preference number: 6 (lower is better)
Translates to: GKLCFTARCIGVVPC*SATFVHPPALMSAR
Trigger: CCGGGCACTCATTAAGGCAGGAGGGTGCACAAATGTGGCTGACAAGCAGGGCACCACTCCTATGCACCTTGCTGTGAAGCACAACTTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 72 bp TCCATGACGAAGGCCAGCACAGGCACGTGGCCTTTCTaGGCAGCACAGTGTAGTAAGGTCAGGCCATCCTTG +
Preference number: 6 (lower is better)
Translates to: SMTKASTGTWPF*AAQCSKVRPSL
Trigger: CAAGGATGGCCTGACCTTACTACACTGTGCTGCTCAGAAAGGCCACGTGCCTGTGCTGGCCTTCGTCATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp ACCTTGGCCCCAGCATTGACCAGGATCTGCACAATCTaGAAGTGGCCAAACCAGGCAGACAGGAGGAGTGAG +
Preference number: 6 (lower is better)
Translates to: TLAPALTRICTI*KWPNQADRRSE
Trigger: CTCACTCCTCCTGTCTGCCTGGTTTGGCCACTTGCAGATTGTGCAGATCCTGGTCAATGCTGGGGCCAAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS GCA 72 bp CCATCTATGAGGAGCTGGACAAGGCCAGGGAAGTTGTaGTTCACAGCAAGGTGCATAGGAGTGGTGCCCTGC +
Preference number: 6 (lower is better)
Translates to: PSMRSWTRPGKL*FTARCIGVVPC
Trigger: GCAGGGCACCACTCCTATGCACCTTGCTGTGAAGCACAACTTCCCTGGCCTTGTCCAGCTCCTCATAGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 72 bp TATTCCTGGTGCTTTCAGCCAAGTCTCTCCTGCCAATaGCCACGAGGCCCTCGAACAGTGCTTTGCTGGGGT +
Preference number: 6 (lower is better)
Translates to: YSWCFQPSLSCQ*PRGPRTVLCWG
Trigger: ACCCCAGCAAAGCACTGTTCGAGGGCCTCGTGGCCATTGGCAGGAGAGACTTGGCTGAAAGCACCAGGAATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CAA 72 bp AGGCAGCTCAGCCTTTTCTGGGTGAGGGCATTCACGTaGCTCCCAGCACCGAGGAGAAGCATCACACAGTCA +
Preference number: 6 (lower is better)
Translates to: RQLSLFWVRAFT*LPAPRRSITQS
Trigger: TGACTGTGTGATGCTTCTCCTCGGTGCTGGGAGCAACGTGAATGCCCTCACCCAGAAAAGGCTGAGCTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 72 bp ACTCTCTTCTCAAACAGCTCCTTCATCCTCTCCACCTaGTTCCAGCGGGAGGCCTCATGGAGCTGTCTCTCC +
Preference number: 6 (lower is better)
Translates to: TLFSNSSFILST*FQREASWSCLS
Trigger: GGAGAGACAGCTCCATGAGGCCTCCCGCTGGAATCAGGTGGAGAGGATGAAGGAGCTGTTTGAGAAGAGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 72 bp ACTGCGTCCAGATCACTGTGGCCATCTATGAGGAGCTaGACAAGGCCAGGGAAGTTGTGCTTCACAGCAAGG +
Preference number: 6 (lower is better)
Translates to: TASRSLWPSMRS*TRPGKLCFTAR
Trigger: CCTTGCTGTGAAGCACAACTTCCCTGGCCTTGTCCAGCTCCTCATAGATGGCCACAGTGATCTGGACGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CAA 90 bp GCACAGTGTAGTAAGGTCAGGCCATCCTTGCTTTCACAGTGGACCTaGGCCCCAGCATTGACCAGGATCTGCACAATCTGCAAGTGGCCA +
Preference number: 6 (lower is better)
Translates to: AQCSKVRPSLLSQWT*APALTRICTICKWP
Trigger: TGGCCACTTGCAGATTGTGCAGATCCTGGTCAATGCTGGGGCCAAGGTCCACTGTGAAAGCAAGGATGGCCTGACCTTACTACACTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CAA 90 bp CATCCGGTGACCATGCTCCTGGTAGCTCCTAGTTCCTGTCCACTGTaGCTCAATGGCACAGACATGAGCCTCCGTGAACTGCCAGGAATA +
Preference number: 6 (lower is better)
Translates to: HPVTMLLVAPSSCPL*LNGTDMSLRELPGI
Trigger: TATTCCTGGCAGTTCACGGAGGCTCATGTCTGTGCCATTGAGCAACAGTGGACAGGAACTAGGAGCTACCAGGAGCATGGTCACCGGATG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 72 bp AATCTGCAAGTGGCCAAACCAGGCAGACAGGAGGAGTaGGTTCATTCCAAACGAGTCCACGTCGTCCACAGC +
Preference number: 6 (lower is better)
Translates to: NLQVAKPGRQEE*VHSKRVHVVHS
Trigger: GCTGTGGACGACGTGGACTCGTTTGGAATGAACTCACTCCTCCTGTCTGCCTGGTTTGGCCACTTGCAGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 72 bp GCACCTGCAGCCCAGTGTAGGGCCACTCTGCCCACATaGTTTCTAGCCCTGATGTTAACTCTCTTCTCAAAC +
Preference number: 6 (lower is better)
Translates to: APAAQCRATLPT*FLALMLTLFSN
Trigger: GTTTGAGAAGAGAGTTAACATCAGGGCTAGAAACCATGTGGGCAGAGTGGCCCTACACTGGGCTGCAGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 72 bp GCCCCAGCATTGACCAGGATCTGCACAATCTGCAAGTaGCCAAACCAGGCAGACAGGAGGAGTGAGTTCATT +
Preference number: 6 (lower is better)
Translates to: APALTRICTICK*PNQADRRSEFI
Trigger: AATGAACTCACTCCTCCTGTCTGCCTGGTTTGGCCACTTGCAGATTGTGCAGATCCTGGTCAATGCTGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 72 bp CAGTGTAGTAAGGTCAGGCCATCCTTGCTTTCACAGTaGACCTTGGCCCCAGCATTGACCAGGATCTGCACA +
Preference number: 6 (lower is better)
Translates to: QCSKVRPSLLSQ*TLAPALTRICT
Trigger: TGTGCAGATCCTGGTCAATGCTGGGGCCAAGGTCCACTGTGAAAGCAAGGATGGCCTGACCTTACTACACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CAA 72 bp CCATCCTTGCTTTCACAGTGGACCTTGGCCCCAGCATaGACCAGGATCTGCACAATCTGCAAGTGGCCAAAC +
Preference number: 6 (lower is better)
Translates to: PSLLSQWTLAPA*TRICTICKWPN
Trigger: GTTTGGCCACTTGCAGATTGTGCAGATCCTGGTCAATGCTGGGGCCAAGGTCCACTGTGAAAGCAAGGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS TCA 72 bp CTTGCTTATCTCTCAGGCTTAAGTCAGCTCCAGCAATaGGAAGCATATCGGCTACATCCTGCCAGGCGTGCT +
Preference number: 6 (lower is better)
Translates to: LAYLSGLSQLQQ*EAYRLHPARRA
Trigger: AGCACGCCTGGCAGGATGTAGCCGATATGCTTCTCATTGCTGGAGCTGACTTAAGCCTGAGAGATAAGCAAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CCA 72 bp CGATCAGCTTTTATGATCATGTCCACCAGGCTGACATaGTTGCTACGGGCAGCTACTGCCAGGGCTGTTTTT +
Preference number: 6 (lower is better)
Translates to: RSAFMIMSTRLT*LLRAATARAVF
Trigger: AAAAACAGCCCTGGCAGTAGCTGCCCGTAGCAACCATGTCAGCCTGGTGGACATGATCATAAAAGCTGATCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2
CDS CAA 72 bp TCAGCTTTTATGATCATGTCCACCAGGCTGACATGGTaGCTACGGGCAGCTACTGCCAGGGCTGTTTTTCCT +
Preference number: 6 (lower is better)
Translates to: SAFMIMSTRLTW*LRAATARAVFP
Trigger: AGGAAAAACAGCCCTGGCAGTAGCTGCCCGTAGCAACCATGTCAGCCTGGTGGACATGATCATAAAAGCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061766.6
ENSMUST00000217646.2