Pregenerated sensors for ANAPC13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035048Ensembl transcript IDs: ENSMUST00000038673.14, ENSMUST00000186693.2, ENSMUST00000188398.7, ENSMUST00000190279.7
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCGCAGGCTTCCAGAGCCGCGGTCTACATTCCTGGGAAGTCTCAGTTTCTCACTTTATCCCCATATGTTTaGAAACTCCGTCCGTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: PQASRAAVYIPGKSQFLTLSPYV*KLRPWE Trigger: TTCCCACGGACGGAGTTTTCAAACATATGGGGATAA...AGTGAGAAACTGAGACTTCCCAGGAATGTAGACCGCGGCTCTGGAAGCCTGCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190279.7 |
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| 3UTR-3UTR CCA 90 bp | CCGCAGGCTTCCAGAGCCGCGGTCTACATTCCTGGGAAGTCTCAGTTTCTCACTCATGCTGTGCTTTGTTaGTTAAACAAAACAGCAAAA | + |
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Preference number: 2 (lower is better) Translates to: PQASRAAVYIPGKSQFLTHAVLC*LNKTAK Trigger: TTTTGCTGTTTTGTTTAACCAACAAAGCACAGCATG...AGTGAGAAACTGAGACTTCCCAGGAATGTAGACCGCGGCTCTGGAAGCCTGCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190279.7 |
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| 3UTR-3UTR CAA 90 bp | CCGCAGGCTTCCAGAGCCGCGGTCTACATTCCTGGGAAGTCTCAGTTTCTCACTTCATGCTGTGCTTTGTaGGTTAAACAAAACAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: PQASRAAVYIPGKSQFLTSCCAL*VKQNSK Trigger: TTTGCTGTTTTGTTTAACCAACAAAGCACAGCATGA...AGTGAGAAACTGAGACTTCCCAGGAATGTAGACCGCGGCTCTGGAAGCCTGCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190279.7 |
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| 3UTR-3UTR CAA 90 bp | CCGCAGGCTTCCAGAGCCGCGGTCTACATTCCTGGGAAGTCTCAGTTTCTCACTTTTTCATGCTGTGCTTaGTTGGTTAAACAAAACAGC | + |
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Preference number: 3 (lower is better) Translates to: PQASRAAVYIPGKSQFLTFSCCA*LVKQNS Trigger: GCTGTTTTGTTTAACCAACAAAGCACAGCATGAAAA...AGTGAGAAACTGAGACTTCCCAGGAATGTAGACCGCGGCTCTGGAAGCCTGCGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000190279.7 |
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| CDS-3UTR GCA 90 bp | CCGCAGGCTTCCAGAGCCGCGGTCTACATTCCTGGGAAGTCTCAGTTTCTCACTGTGCCTCCGTTGTCTTaGTCGGGCTCAGGAAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: PQASRAAVYIPGKSQFLTVPPLS*SGSGSS Trigger: TGAGCTTCCTGAGCCCGAGCAAGACAACGGAGGCAC...AGTGAGAAACTGAGACTTCCCAGGAATGTAGACCGCGGCTCTGGAAGCCTGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190279.7 |
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| CDS-3UTR CCA 90 bp | CCGCAGGCTTCCAGAGCCGCGGTCTACATTCCTGGGAAGTCTCAGTTTCTCACTGGCGACATCCTCATATaGCAGCTTATCTTCCCGCCA | + |
|
Preference number: 4 (lower is better) Translates to: PQASRAAVYIPGKSQFLTGDILI*QLIFPP Trigger: TGGCGGGAAGATAAGCTGCCATATGAGGATGTCGCC...AGTGAGAAACTGAGACTTCCCAGGAATGTAGACCGCGGCTCTGGAAGCCTGCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190279.7 |
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| CDS-3UTR GCA 90 bp | GTTGATTTATTGCTAAAGATCTGCATTTGGCGACAGGAAACATTTTTATCCCCAGTGCCTCCGTTGTCTTaGTCGGGCTCAGGAAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: VDLLLKICIWRQETFLSPVPPLS*SGSGSS Trigger: TGAGCTTCCTGAGCCCGAGCAAGACAACGGAGGCAC...TGGGGATAAAAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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| CDS-3UTR CCA 90 bp | AGTGTTGATTTATTGCTAAAGATCTGCATTTGGCGACAGGAAACATTTTTATCCGGCGACATCCTCATATaGCAGCTTATCTTCCCGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SVDLLLKICIWRQETFLSGDILI*QLIFPP Trigger: TGGCGGGAAGATAAGCTGCCATATGAGGATGTCGCC...GGATAAAAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAACACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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| CDS-3UTR CCA 90 bp | GTTGATTTATTGCTAAAGATCTGCATTTGGCGACAGGAAACATTTTTATCCCCACTTTCACAGACTCTGTaGTGCCTCCGTTGTCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: VDLLLKICIWRQETFLSPLSQTL*CLRCLA Trigger: AGCAAGACAACGGAGGCACCACAGAGTCTGTGAAAG...TGGGGATAAAAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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| CDS-3UTR CCA 90 bp | AGTGTTGATTTATTGCTAAAGATCTGCATTTGGCGACAGGAAACATTTTTATCCCTTTCACAGACTCTGTaGTGCCTCCGTTGTCTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: SVDLLLKICIWRQETFLSLSQTL*CLRCLA Trigger: AGCAAGACAACGGAGGCACCACAGAGTCTGTGAAAG...GGATAAAAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAACACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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| CDS-3UTR CCA 90 bp | AGTGTTGATTTATTGCTAAAGATCTGCATTTGGCGACAGGAAACATTTTTATCCAGGAAGCTCACTCAGTaGAATGGCGACATCCTCATA | + |
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Preference number: 4 (lower is better) Translates to: SVDLLLKICIWRQETFLSRKLTQ*NGDILI Trigger: TATGAGGATGTCGCCATTCCACTGAGTGAGCTTCCT...GGATAAAAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAACACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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| 3UTR CAA 72 bp | AAACCAAGTGGGCATATGCTTTTGAGTGTTGATTTATaGCTAAAGATCTGCATTTGGCGACAGGAAACATTT | + |
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Preference number: 4 (lower is better) Translates to: KPSGHMLLSVDL*LKICIWRQETF Trigger: AAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAACACTCAAAAGCATATGCCCACTTGGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190279.7 |
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| CDS-3UTR CAA 90 bp | CCGCAGGCTTCCAGAGCCGCGGTCTACATTCCTGGGAAGTCTCAGTTTCTCACTGGTGCCTCCGTTGTCTaGCTCGGGCTCAGGAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: PQASRAAVYIPGKSQFLTGASVV*LGLRKL Trigger: GAGCTTCCTGAGCCCGAGCAAGACAACGGAGGCACC...AGTGAGAAACTGAGACTTCCCAGGAATGTAGACCGCGGCTCTGGAAGCCTGCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190279.7 |
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| CDS-3UTR CAA 90 bp | GTTGATTTATTGCTAAAGATCTGCATTTGGCGACAGGAAACATTTTTATCCCCAGGTGCCTCCGTTGTCTaGCTCGGGCTCAGGAAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: VDLLLKICIWRQETFLSPGASVV*LGLRKL Trigger: GAGCTTCCTGAGCCCGAGCAAGACAACGGAGGCACC...TGGGGATAAAAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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| CDS-3UTR CAA 90 bp | AGTGTTGATTTATTGCTAAAGATCTGCATTTGGCGACAGGAAACATTTTTATCCGGTGCCTCCGTTGTCTaGCTCGGGCTCAGGAAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: SVDLLLKICIWRQETFLSGASVV*LGLRKL Trigger: GAGCTTCCTGAGCCCGAGCAAGACAACGGAGGCACC...GGATAAAAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAACACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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| CDS-3UTR CAA 90 bp | GTTGATTTATTGCTAAAGATCTGCATTTGGCGACAGGAAACATTTTTATCCCCATCTGTGGTGCCTCCGTaGTCTTGCTCGGGCTCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: VDLLLKICIWRQETFLSPSVVPP*SCSGSG Trigger: TCCTGAGCCCGAGCAAGACAACGGAGGCACCACAGA...TGGGGATAAAAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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| CDS-3UTR CAA 90 bp | AGTGTTGATTTATTGCTAAAGATCTGCATTTGGCGACAGGAAACATTTTTATCCTCTGTGGTGCCTCCGTaGTCTTGCTCGGGCTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: SVDLLLKICIWRQETFLSSVVPP*SCSGSG Trigger: TCCTGAGCCCGAGCAAGACAACGGAGGCACCACAGA...GGATAAAAATGTTTCCTGTCGCCAAATGCAGATCTTTAGCAATAAATCAACACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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| CDS GCA 72 bp | TCCACTTCATCTCCTGTTCTTTCACAGACTCTGTGGTaGCTCCGTTGTCTTGCTCGGGCTCAGGAAGCTCAC | + |
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Preference number: 6 (lower is better) Translates to: STSSPVLSQTLW*LRCLARAQEAH Trigger: GTGAGCTTCCTGAGCCCGAGCAAGACAACGGAGGCACCACAGAGTCTGTGAAAGAACAGGAGATGAAGTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038673.14 ENSMUST00000186693.2 ENSMUST00000188398.7 ENSMUST00000190279.7 |
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