Pregenerated sensors for AMT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032607Ensembl transcript IDs: ENSMUST00000035230.7
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CCTAAGCAGACCCAGCAAACCTCATTCAGCTTCCACCCGTGGGAGTaGTACTCCACTGTTCTGACTAAGCACTATGCCATGCCCTCTAGA | + |
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Preference number: 2 (lower is better) Translates to: PKQTQQTSFSFHPWE*YSTVLTKHYAMPSR Trigger: TCTAGAGGGCATGGCATAGTGCTTAGTCAGAACAGTGGAGTACAACTCCCACGGGTGGAAGCTGAATGAGGTTTGCTGGGTCTGCTTAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| 3UTR-3UTR TCA 90 bp | GAAATTAGAGAAGCCATAGTGAGGTGGGCGGAGGTGTTACCCTCCACACAAAGGTGTACTCCACTGTTCTaGCTAAGCACTATGCCATGC | + |
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Preference number: 2 (lower is better) Translates to: EIREAIVRWAEVLPSTQRCTPLF*LSTMPC Trigger: GCATGGCATAGTGCTTAGTCAGAACAGTGGAGTACA...CCTTTGTGTGGAGGGTAACACCTCCGCCCACCTCACTATGGCTTCTCTAATTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| 3UTR-3UTR CCA 90 bp | TCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCACCAGGCAGATTAAGCTAGAGAAACACTCCTaGAGGGAAGGGCTTCCCCAT | + |
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Preference number: 2 (lower is better) Translates to: STQRQDDLCSKVSTRQIKLEKHS*REGLPH Trigger: ATGGGGAAGCCCTTCCCTCCAGGAGTGTTTCTCTAG...CTTAATCTGCCTGGTGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| 3UTR-3UTR GCA 90 bp | TCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCACCAGGCAGATTAAGCTAAGCACTATGCCATaGCCTCTAGAGAAACACTCC | + |
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Preference number: 2 (lower is better) Translates to: STQRQDDLCSKVSTRQIKLSTMP*PLEKHS Trigger: GGAGTGTTTCTCTAGAGGGCATGGCATAGTGCTTAG...CTTAATCTGCCTGGTGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| 3UTR-3UTR CAA 90 bp | TCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCACCAGGCAGATTAAGAGGCAGATTTCTGAGTaGGAGGCCAGCCTGGTCTAC | + |
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Preference number: 3 (lower is better) Translates to: STQRQDDLCSKVSTRQIKRQISE*EASLVY Trigger: GTAGACCAGGCTGGCCTCCAACTCAGAAATCTGCCT...CTTAATCTGCCTGGTGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| 3UTR-3UTR CAA 90 bp | TTAAAAATTGGGCCCTACGCCTTTAATCCCAGCACTCAGAGGCAGAGGCAGGCAAATTGGGCCCTAAAATaGGAATGGCTTGTAAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: LKIGPYAFNPSTQRQRQANWALK*EWLVRE Trigger: TTCCCTTACAAGCCATTCCAATTTTAGGGCCCAATT...TGCCTGCCTCTGCCTCTGAGTGCTGGGATTAAAGGCGTAGGGCCCAATTTTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | CTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGCTTCCACCCGTGGGAGAGTAGTTGCCAAGTaGACTGCCCCTGTTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LSPTLSRPSKPHSASTRGRVVAK*TAPVAG Trigger: CCCAGCAACAGGGGCAGTCCACTTGGCAACTACTCT...CCCACGGGTGGAAGCTGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR TCA 90 bp | GATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGCTTCCACCCGTTTCTTCAGGCTGGGTaGAGGGCAGCCACTGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: DSLPNPKQTQQTSFSFHPFLQAG*RAATGH Trigger: GTGACCAGTGGCTGCCCTTCACCCAGCCTGAAGAAA...CGGGTGGAAGCTGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | GATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGCTTCCACCCGCCCGGCAGCCAGCATTaGATACTACATACAGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: DSLPNPKQTQQTSFSFHPPGSQH*ILHTGA Trigger: GGCACCTGTATGTAGTATCCAATGCTGGCTGCCGGG...CGGGTGGAAGCTGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR TCA 90 bp | TTAAAAATTGGGCCCTACGCCTTTAATCCCAGCACTCAGAGGCAGAGGCAGGCACATCCTGTACAGAACTaGGTGGGCGACTCTGGACCA | + |
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Preference number: 4 (lower is better) Translates to: LKIGPYAFNPSTQRQRQAHPVQN*VGDSGP Trigger: TGGTCCAGAGTCGCCCACTCAGTTCTGTACAGGATG...TGCCTGCCTCTGCCTCTGAGTGCTGGGATTAAAGGCGTAGGGCCCAATTTTTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR TCA 90 bp | GATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGCTTCCACCCGCCCTGTTGCTGGGACTaGTATCTCAACACCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: DSLPNPKQTQQTSFSFHPPCCWD*YLNTIF Trigger: GAAGATGGTGTTGAGATATCAGTCCCAGCAACAGGG...CGGGTGGAAGCTGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR GCA 90 bp | GATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGCTTCCACCCGCAAAATAGGACTGTGTaGTCTCACTGGAGCCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: DSLPNPKQTQQTSFSFHPQNRTV*SHWSPF Trigger: GAAGGGGCTCCAGTGAGAGCACACAGTCCTATTTTG...CGGGTGGAAGCTGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | CGGAGGTGTTACCCTCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCATCCAGGCCCCTGTTCTaGAACTCCTTGACCTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: RRCYPPHKGRMTFVPKSASRPLF*NSLTLS Trigger: GGACAAGGTCAAGGAGTTCCAGAACAGGGGCCTGGA...TGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGAGGGTAACACCTCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR GCA 90 bp | TCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCACCAGGCAGATTAAGACCAAGGGTTGTGCCTaGAGGCGAAAACCCAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: STQRQDDLCSKVSTRQIKTKGCA*RRKPRG Trigger: CCCTCTGGGTTTTCGCCTGCAGGCACAACCCTTGGT...CTTAATCTGCCTGGTGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR GCA 90 bp | TTAAAAATTGGGCCCTACGCCTTTAATCCCAGCACTCAGAGGCAGAGGCAGGCACATAGAGTGGAGTCCTaGGGAGCACATCCTGTACAG | + |
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Preference number: 4 (lower is better) Translates to: LKIGPYAFNPSTQRQRQAHRVES*GAHPVQ Trigger: CTGTACAGGATGTGCTCCGCAGGACTCCACTCTATG...TGCCTGCCTCTGCCTCTGAGTGCTGGGATTAAAGGCGTAGGGCCCAATTTTTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR GCA 90 bp | TTAAAAATTGGGCCCTACGCCTTTAATCCCAGCACTCAGAGGCAGAGGCAGGCATCAAAGAGAGAGCAATaGCGGCGTGTGTGCAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: LKIGPYAFNPSTQRQRQASKREQ*RRVCRC Trigger: ACACCTGCACACACGCCGGCATTGCTCTCTCTTTGA...TGCCTGCCTCTGCCTCTGAGTGCTGGGATTAAAGGCGTAGGGCCCAATTTTTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | TTAAAAATTGGGCCCTACGCCTTTAATCCCAGCACTCAGAGGCAGAGGCAGGCAACACCTGTGTTGCCGTaGGTCCTTGCAGAGCTAACA | + |
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Preference number: 4 (lower is better) Translates to: LKIGPYAFNPSTQRQRQATPVLP*VLAELT Trigger: TGTTAGCTCTGCAAGGACCCACGGCAACACAGGTGT...TGCCTGCCTCTGCCTCTGAGTGCTGGGATTAAAGGCGTAGGGCCCAATTTTTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| 3UTR CAA 72 bp | ACCCAGCAAACCTCATTCAGCTTCCACCCGTGGGAGTaGTACTCCACTGTTCTGACTAAGCACTATGCCATG | + |
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Preference number: 4 (lower is better) Translates to: TQQTSFSFHPWE*YSTVLTKHYAM Trigger: CATGGCATAGTGCTTAGTCAGAACAGTGGAGTACAACTCCCACGGGTGGAAGCTGAATGAGGTTTGCTGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR GCA 90 bp | ATTCTAGATAGGATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGTTGCCGTGGGTCCTTaGAGAGCTAACAGGGCATTC | + |
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Preference number: 4 (lower is better) Translates to: ILDRILSPTLSRPSKPHSVAVGP*RANRAF Trigger: GAATGCCCTGTTAGCTCTGCAAGGACCCACGGCAAC...TGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATCCTATCTAGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | TCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCACCAGGCAGATTAAGCATTTTTCTTCAGGCTaGGTGAAGGGCAGCCACTGG | + |
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Preference number: 4 (lower is better) Translates to: STQRQDDLCSKVSTRQIKHFSSG*VKGSHW Trigger: CCAGTGGCTGCCCTTCACCCAGCCTGAAGAAAAATG...CTTAATCTGCCTGGTGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| 3UTR CAA 72 bp | TTAAACCAGCCATGTCTTGCTGCACAGCAGGCTGGGTaGACTAGAGAATGTGGAAGGGTGAGTCCCATGTTT | + |
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Preference number: 4 (lower is better) Translates to: LNQPCLAAQQAG*TRECGRVSPMF Trigger: AAACATGGGACTCACCCTTCCACATTCTCTAGTCAACCCAGCCTGCTGTGCAGCAAGACATGGCTGGTTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR GCA 90 bp | ATTCTAGATAGGATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAAGGCAGACTCCACCCTaGAAACGCCACCATTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: ILDRILSPTLSRPSKPHSRQTPP*KRHHFS Trigger: GGAAAAATGGTGGCGTTTGCAGGGTGGAGTCTGCCT...TGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATCCTATCTAGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | ATTCTAGATAGGATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGTGGAAGTCATAGAGTaGAGTCCTGCGGAGCACATC | + |
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Preference number: 4 (lower is better) Translates to: ILDRILSPTLSRPSKPHSVEVIE*SPAEHI Trigger: GATGTGCTCCGCAGGACTCCACTCTATGACTTCCAC...TGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATCCTATCTAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | CGGAGGTGTTACCCTCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCACACAGCCAAATATCTTaGTCTGTAGCATGTGGGACA | + |
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Preference number: 4 (lower is better) Translates to: RRCYPPHKGRMTFVPKSAHSQIS*SVACGT Trigger: TGTCCCACATGCTACAGACCAAGATATTTGGCTGTG...TGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGAGGGTAACACCTCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | TTAAAAATTGGGCCCTACGCCTTTAATCCCAGCACTCAGAGGCAGAGGCAGGCAAATGATTTTGGCTCCTaGGAAGTCCATAGCAATGCG | + |
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Preference number: 4 (lower is better) Translates to: LKIGPYAFNPSTQRQRQANDFGS*EVHSNA Trigger: CGCATTGCTATGGACTTCCCAGGAGCCAAAATCATT...TGCCTGCCTCTGCCTCTGAGTGCTGGGATTAAAGGCGTAGGGCCCAATTTTTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | TCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCACCAGGCAGATTAAGACTGTGTGCTCTCACTaGAGCCCCTTCACATATCAG | + |
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Preference number: 4 (lower is better) Translates to: STQRQDDLCSKVSTRQIKTVCSH*SPFTYQ Trigger: CTGATATGTGAAGGGGCTCCAGTGAGAGCACACAGT...CTTAATCTGCCTGGTGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR GCA 90 bp | TTAAAAATTGGGCCCTACGCCTTTAATCCCAGCACTCAGAGGCAGAGGCAGGCAGATACTACATACAGGTaGCCCTCAGAAGTATTGCTT | + |
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Preference number: 4 (lower is better) Translates to: LKIGPYAFNPSTQRQRQADTTYR*PSEVLL Trigger: AAGCAATACTTCTGAGGGGCACCTGTATGTAGTATC...TGCCTGCCTCTGCCTCTGAGTGCTGGGATTAAAGGCGTAGGGCCCAATTTTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR GCA 90 bp | ATTCTAGATAGGATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCATCCTTGACCTTGTCCTaGATGAGAGCCAAGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: ILDRILSPTLSRPSKPHSSLTLS*MRAKSL Trigger: CAAGGACTTGGCTCTCATGCAGGACAAGGTCAAGGA...TGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATCCTATCTAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | CGGAGGTGTTACCCTCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCAGAGTATAATAGTTGGTaGGCACAAAGGGCATTTTGC | + |
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Preference number: 4 (lower is better) Translates to: RRCYPPHKGRMTFVPKSAEYNSW*AQRAFC Trigger: GCAAAATGCCCTTTGTGCCCACCAACTATTATACTC...TGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGAGGGTAACACCTCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | TTTGAAATTAGAGAAGCCATAGTGAGGTGGGCGGAGGTGTTACCCTCCACACAATTGGTCTGTAGCATGTaGGACACATCAAAGAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: FEIREAIVRWAEVLPSTQLVCSM*DTSKRE Trigger: CTCTCTCTTTGATGTGTCCCACATGCTACAGACCAA...TTGTGTGGAGGGTAACACCTCCGCCCACCTCACTATGGCTTCTCTAATTTCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | TTTGAAATTAGAGAAGCCATAGTGAGGTGGGCGGAGGTGTTACCCTCCACACAATCGACTGTACTTAAATaGCACATAACCCATCGCCAC | + |
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Preference number: 4 (lower is better) Translates to: FEIREAIVRWAEVLPSTQSTVLK*HITHRH Trigger: GTGGCGATGGGTTATGTGCCATTTAAGTACAGTCGA...TTGTGTGGAGGGTAACACCTCCGCCCACCTCACTATGGCTTCTCTAATTTCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CCA 90 bp | AAGATTCTAGATAGGATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTGCCAGCTTTACCTCTaGATTTTTCAACAGAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: KILDRILSPTLSRPSKPHCQLYL*IFQQSS Trigger: ACTACTCTGTTGAAAAATCCAGAGGTAAAGCTGGCA...ATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATCCTATCTAGAATCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CCA 90 bp | GGAGTCCTGCGGAGCACATCCTGTACAGAACTGAGTGGGCGACTCTaGACCAAGGGTTGTGCCTGCAGGCGAAAACCCAGAGGGGCTACC | + |
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Preference number: 5 (lower is better) Translates to: GVLRSTSCTELSGRL*TKGCACRRKPRGAT Trigger: GGTAGCCCCTCTGGGTTTTCGCCTGCAGGCACAACCCTTGGTCCAGAGTCGCCCACTCAGTTCTGTACAGGATGTGCTCCGCAGGACTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS GCA 90 bp | CACATCCTGTACAGAACTGAGTGGGCGACTCTGGACCAAGGGTTGTaGCTGCAGGCGAAAACCCAGAGGGGCTACCACACTGACTATCCG | + |
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Preference number: 5 (lower is better) Translates to: HILYRTEWATLDQGL*LQAKTQRGYHTDYP Trigger: CGGATAGTCAGTGTGGTAGCCCCTCTGGGTTTTCGCCTGCAGGCACAACCCTTGGTCCAGAGTCGCCCACTCAGTTCTGTACAGGATGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS TCA 90 bp | GGAAGTCATAGAGTGGAGTCCTGCGGAGCACATCCTGTACAGAACTaGGTGGGCGACTCTGGACCAAGGGTTGTGCCTGCAGGCGAAAAC | + |
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Preference number: 5 (lower is better) Translates to: GSHRVESCGAHPVQN*VGDSGPRVVPAGEN Trigger: GTTTTCGCCTGCAGGCACAACCCTTGGTCCAGAGTCGCCCACTCAGTTCTGTACAGGATGTGCTCCGCAGGACTCCACTCTATGACTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CAA 90 bp | GATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGCTTCCACCCGTCCCGGCAGCCAGCATaGGATACTACATACAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: DSLPNPKQTQQTSFSFHPSRQPA*DTTYRC Trigger: GCACCTGTATGTAGTATCCAATGCTGGCTGCCGGGA...CGGGTGGAAGCTGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CCA 90 bp | TCTTCATATCATCTGTCACCCCAGCCTGTAACACCTGTGTTGCCGTaGGTCCTTGCAGAGCTAACAGGGCATTCTCTACCACCTCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: SSYHLSPQPVTPVLP*VLAELTGHSLPPPG Trigger: GCCTGGAGGTGGTAGAGAATGCCCTGTTAGCTCTGCAAGGACCCACGGCAACACAGGTGTTACAGGCTGGGGTGACAGATGATATGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CAA 90 bp | GATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGCTTCCACCCGATGACTGTCACGGTATaGTACAGGCAGACTCCACCC | + |
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Preference number: 5 (lower is better) Translates to: DSLPNPKQTQQTSFSFHPMTVTV*YRQTPP Trigger: GGGTGGAGTCTGCCTGTACAATACCGTGACAGTCAT...CGGGTGGAAGCTGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS TCA 90 bp | TCAAAGAGAGAGCAATGCCGGCGTGTGTGCAGGTGTGAATCAACATaGCTGTCACGGTATTGTACAGGCAGACTCCACCCTGCAAACGCC | + |
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Preference number: 5 (lower is better) Translates to: SKREQCRRVCRCEST*LSRYCTGRLHPANA Trigger: GGCGTTTGCAGGGTGGAGTCTGCCTGTACAATACCGTGACAGTCATGTTGATTCACACCTGCACACACGCCGGCATTGCTCTCTCTTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CAA 90 bp | TCCACACAAAGGCAGGATGACCTTTGTTCCAAAGTCAGCACCAGGCAGATTAAGTGGAACTCCTTGACCTaGTCCTGCATGAGAGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: STQRQDDLCSKVSTRQIKWNSLT*SCMRAK Trigger: CTTGGCTCTCATGCAGGACAAGGTCAAGGAGTTCCA...CTTAATCTGCCTGGTGCTGACTTTGGAACAAAGGTCATCCTGCCTTTGTGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CAA 90 bp | CTAGATAGGATTCTCTCCCCAACCCTAAGCAGACCCAGCAAACCTCATTCAGCTATGCCTCCAGCTTCGTaGGTAAACAAAGAGAGTGTT | + |
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Preference number: 5 (lower is better) Translates to: LDRILSPTLSRPSKPHSAMPPAS*VNKESV Trigger: AACACTCTCTTTGTTTACCAACGAAGCTGGAGGCAT...AGCTGAATGAGGTTTGCTGGGTCTGCTTAGGGTTGGGGAGAGAATCCTATCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS-3UTR CAA 90 bp | TTCTTTGAAATTAGAGAAGCCATAGTGAGGTGGGCGGAGGTGTTACCCTCCACAGGCACAAAGGGCATTTaGCTAACCACTGTCATTTGC | + |
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Preference number: 5 (lower is better) Translates to: FFEIREAIVRWAEVLPSTGTKGI*LTTVIC Trigger: GCAAATGACAGTGGTTAGCAAAATGCCCTTTGTGCC...TGTGGAGGGTAACACCTCCGCCCACCTCACTATGGCTTCTCTAATTTCAAAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS TCA 72 bp | AGAGTGGAGTCCTGCGGAGCACATCCTGTACAGAACTaGGTGGGCGACTCTGGACCAAGGGTTGTGCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: RVESCGAHPVQN*VGDSGPRVVPA Trigger: TGCAGGCACAACCCTTGGTCCAGAGTCGCCCACTCAGTTCTGTACAGGATGTGCTCCGCAGGACTCCACTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS GCA 72 bp | TACAGAACTGAGTGGGCGACTCTGGACCAAGGGTTGTaGCTGCAGGCGAAAACCCAGAGGGGCTACCACACT | + |
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Preference number: 6 (lower is better) Translates to: YRTEWATLDQGL*LQAKTQRGYHT Trigger: AGTGTGGTAGCCCCTCTGGGTTTTCGCCTGCAGGCACAACCCTTGGTCCAGAGTCGCCCACTCAGTTCTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CCA 72 bp | CGGAGCACATCCTGTACAGAACTGAGTGGGCGACTCTaGACCAAGGGTTGTGCCTGCAGGCGAAAACCCAGA | + |
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Preference number: 6 (lower is better) Translates to: RSTSCTELSGRL*TKGCACRRKPR Trigger: TCTGGGTTTTCGCCTGCAGGCACAACCCTTGGTCCAGAGTCGCCCACTCAGTTCTGTACAGGATGTGCTCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CAA 90 bp | GAGCACATCCTGTACAGAACTGAGTGGGCGACTCTGGACCAAGGGTaGTGCCTGCAGGCGAAAACCCAGAGGGGCTACCACACTGACTAT | + |
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Preference number: 6 (lower is better) Translates to: EHILYRTEWATLDQG*CLQAKTQRGYHTDY Trigger: ATAGTCAGTGTGGTAGCCCCTCTGGGTTTTCGCCTGCAGGCACAACCCTTGGTCCAGAGTCGCCCACTCAGTTCTGTACAGGATGTGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS GCA 72 bp | GGCACAAAGGGCATTTTGCTAACCACTGTCATTTGCTaGTTCCGCCGGACTTCCACCAGCAGCTGTGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: GTKGILLTTVIC*FRRTSTSSCVP Trigger: AGGGACACAGCTGCTGGTGGAAGTCCGGCGGAAGCAGCAAATGACAGTGGTTAGCAAAATGCCCTTTGTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CCA 72 bp | CATCTGTCACCCCAGCCTGTAACACCTGTGTTGCCGTaGGTCCTTGCAGAGCTAACAGGGCATTCTCTACCA | + |
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Preference number: 6 (lower is better) Translates to: HLSPQPVTPVLP*VLAELTGHSLP Trigger: TGGTAGAGAATGCCCTGTTAGCTCTGCAAGGACCCACGGCAACACAGGTGTTACAGGCTGGGGTGACAGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS TCA 72 bp | GAGCAATGCCGGCGTGTGTGCAGGTGTGAATCAACATaGCTGTCACGGTATTGTACAGGCAGACTCCACCCT | + |
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Preference number: 6 (lower is better) Translates to: EQCRRVCRCEST*LSRYCTGRLHP Trigger: AGGGTGGAGTCTGCCTGTACAATACCGTGACAGTCATGTTGATTCACACCTGCACACACGCCGGCATTGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CAA 72 bp | AACTCCTTGACCTTGTCCTGCATGAGAGCCAAGTCCTaGTCCCGGCAGCCAGCATTGGATACTACATACAGG | + |
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Preference number: 6 (lower is better) Translates to: NSLTLSCMRAKS*SRQPALDTTYR Trigger: CCTGTATGTAGTATCCAATGCTGGCTGCCGGGACAAGGACTTGGCTCTCATGCAGGACAAGGTCAAGGAGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CAA 72 bp | TCATATCATCTGTCACCCCAGCCTGTAACACCTGTGTaGCCGTGGGTCCTTGCAGAGCTAACAGGGCATTCT | + |
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Preference number: 6 (lower is better) Translates to: SYHLSPQPVTPV*PWVLAELTGHS Trigger: AGAATGCCCTGTTAGCTCTGCAAGGACCCACGGCAACACAGGTGTTACAGGCTGGGGTGACAGATGATATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CAA 90 bp | GTAGTTTCTTCATATCATCTGTCACCCCAGCCTGTAACACCTGTGTaGCCGTGGGTCCTTGCAGAGCTAACAGGGCATTCTCTACCACCT | + |
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Preference number: 6 (lower is better) Translates to: VVSSYHLSPQPVTPV*PWVLAELTGHSLPP Trigger: AGGTGGTAGAGAATGCCCTGTTAGCTCTGCAAGGACCCACGGCAACACAGGTGTTACAGGCTGGGGTGACAGATGATATGAAGAAACTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CCA 72 bp | ACTCGGTCACAGCCAAATATCTTGGTCTGTAGCATGTaGGACACATCAAAGAGAGAGCAATGCCGGCGTGTG | + |
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Preference number: 6 (lower is better) Translates to: TRSQPNILVCSM*DTSKREQCRRV Trigger: CACACGCCGGCATTGCTCTCTCTTTGATGTGTCCCACATGCTACAGACCAAGATATTTGGCTGTGACCGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CCA 72 bp | TCTCCAGCAGCTTCACTCGGTCACAGCCAAATATCTTaGTCTGTAGCATGTGGGACACATCAAAGAGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: SPAASLGHSQIS*SVACGTHQRES Trigger: GCTCTCTCTTTGATGTGTCCCACATGCTACAGACCAAGATATTTGGCTGTGACCGAGTGAAGCTGCTGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CCA 72 bp | CACCAGCAGCTGTGTCCCTGGTCGACTGTACTTAAATaGCACATAACCCATCGCCACATTTTTCTTCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: HQQLCPWSTVLK*HITHRHIFLQA Trigger: AGCCTGAAGAAAAATGTGGCGATGGGTTATGTGCCATTTAAGTACAGTCGACCAGGGACACAGCTGCTGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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| CDS CAA 72 bp | CTCTCCAGCAGCTTCACTCGGTCACAGCCAAATATCTaGGTCTGTAGCATGTGGGACACATCAAAGAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: LSSSFTRSQPNI*VCSMWDTSKRE Trigger: CTCTCTCTTTGATGTGTCCCACATGCTACAGACCAAGATATTTGGCTGTGACCGAGTGAAGCTGCTGGAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035230.7 |
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