RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AMOTL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000013076

Ensembl transcript IDs: ENSMUST00000013220.8, ENSMUST00000162901.8, ENSMUST00000223132.2

Found 421 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTAAGGAGGGGGTGGGAGGCTCCCAGCCTGGTTCCCACTGCCAAGTaGAGTGTGGGTAGTCTAGTCCCACCTCCTCTGTCTTGTCAGATG +
Preference number: 1 (lower is better)
Translates to: LRRGWEAPSLVPTAK*SVGSLVPPPLSCQM
Trigger: CATCTGACAAGACAGAGGAGGTGGGACTAGACTACCCACACTCCACTTGGCAGTGGGAACCAGGCTGGGAGCCTCCCACCCCCTCCTTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp CCCAGAGCACAGCGAGGCTCCCGAGTGCCTGGGGCTCCTCTATCATaGACCCTTCAAGAGAATTACAAGGACAGAAGACTGAAGGGCCTC +
Preference number: 1 (lower is better)
Translates to: PRAQRGSRVPGAPLS*TLQENYKDRRLKGL
Trigger: GAGGCCCTTCAGTCTTCTGTCCTTGTAATTCTCTTGAAGGGTGCATGATAGAGGAGCCCCAGGCACTCGGGAGCCTCGCTGTGCTCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp TCAGTACTCAGGCTGCAAGATCTGAGAGAAGAGTTAAGGAGGGGGTaGGAGGCTCCCAGCCTGGTTCCCACTGCCAAGTGGAGTGTGGGT +
Preference number: 1 (lower is better)
Translates to: SVLRLQDLREELRRG*EAPSLVPTAKWSVG
Trigger: ACCCACACTCCACTTGGCAGTGGGAACCAGGCTGGGAGCCTCCCACCCCCTCCTTAACTCTTCTCTCAGATCTTGCAGCCTGAGTACTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp CCCATGCTACCTAGAGAGCTCTGGGTAAGCCATCATGGGTTCCTGTaGCACCTATTCACAAGGAAGTCTTCCCCACAGGGCGATGGGGTG +
Preference number: 1 (lower is better)
Translates to: PMLPRELWVSHHGFL*HLFTRKSSPQGDGV
Trigger: CACCCCATCGCCCTGTGGGGAAGACTTCCTTGTGAATAGGTGCCACAGGAACCCATGATGGCTTACCCAGAGCTCTCTAGGTAGCATGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp AGCTTGGAGATGGGCTGTATGCCTCCTGGGTCCAGCTTCTGCATCTaGACAACCAGGAGGGAGAACCTGGCCTCGTTTCTCTGGTGCTTT +
Preference number: 1 (lower is better)
Translates to: SLEMGCMPPGSSFCI*TTRRENLASFLWCF
Trigger: AAAGCACCAGAGAAACGAGGCCAGGTTCTCCCTCCTGGTTGTTCAGATGCAGAAGCTGGACCCAGGAGGCATACAGCCCATCTCCAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp CCTGCACCTACCTGCTTCTGTCTCAACTGGCAAGACCTCTTATGCTaGCTTCTCACTCCCTTCCCCACAAGGCACAGGGCAAGCTCAGTA +
Preference number: 1 (lower is better)
Translates to: PAPTCFCLNWQDLLC*LLTPFPTRHRASSV
Trigger: TACTGAGCTTGCCCTGTGCCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACAGAAGCAGGTAGGTGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp GTCAGGGTGAAGCTGGTACCAGTGTTGGCCCTGGTTCACAGAATTTaGCACAGATTCTGTGAGCACCTCACTGAGGAGGGGGCTCCATTG +
Preference number: 1 (lower is better)
Translates to: VRVKLVPVLALVHRI*HRFCEHLTEEGAPL
Trigger: CAATGGAGCCCCCTCCTCAGTGAGGTGCTCACAGAATCTGTGTCAAATTCTGTGAACCAGGGCCAACACTGGTACCAGCTTCACCCTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp CCCACTCAGGATGGCTCTCTGCAGCCTACTCACAAAGGAGCTGCTTaGAGACACCTTGTGTCACAGTCATCTCCTCCTGACAACACCTTG +
Preference number: 1 (lower is better)
Translates to: PTQDGSLQPTHKGAA*RHLVSQSSPPDNTL
Trigger: CAAGGTGTTGTCAGGAGGAGATGACTGTGACACAAGGTGTCTTCAAGCAGCTCCTTTGTGAGTAGGCTGCAGAGAGCCATCCTGAGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp GGACTCCTCAGCCAGGTATCTCTAGCTCACAATAAGGCTGACAGCTaGAGTTCTGCTAAGCAAAGGTGGGAAGAGCAGTTGGGGTGCCAA +
Preference number: 1 (lower is better)
Translates to: GLLSQVSLAHNKADS*SSAKQRWEEQLGCQ
Trigger: TTGGCACCCCAACTGCTCTTCCCACCTTTGCTTAGCAGAACTGCAGCTGTCAGCCTTATTGTGAGCTAGAGATACCTGGCTGAGGAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp CAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTaGGGGACGGAACAACACAGGTCCCACCATTCCCTGTCTCCACCC +
Preference number: 1 (lower is better)
Translates to: QKNVKPYTWAPKRDL*GTEQHRSHHSLSPP
Trigger: GGGTGGAGACAGGGAATGGTGGGACCTGTGTTGTTCCGTCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp AAAGGTTACACATGGATACCAGAGTCCGCTGGGAAGTGCGGCACATaGCCCCAGCAGAGACACACACACACAACCACACCTATACACACA +
Preference number: 1 (lower is better)
Translates to: KGYTWIPESAGKCGT*PQQRHTHTTTPIHT
Trigger: TGTGTGTATAGGTGTGGTTGTGTGTGTGTGTCTCTGCTGGGGGCATGTGCCGCACTTCCCAGCGGACTCTGGTATCCATGTGTAACCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp CTTACTGATCTGGAGATAGTTCACCCTCCCCTGGGCAGCTTCTTCTaGGGTTTCCAGGAAGCCAGCTTCCACAGCAATGAACATGAGAGC +
Preference number: 1 (lower is better)
Translates to: LTDLEIVHPPLGSFF*GFQEASFHSNEHES
Trigger: GCTCTCATGTTCATTGCTGTGGAAGCTGGCTTCCTGGAAACCCCAGAAGAAGCTGCCCAGGGGAGGGTGAACTATCTCCAGATCAGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp CAGCTCTGGGAAGGGAGGAGCTTCAGCCACTTTATTAACTATGTGTaGGTGGCTGGAGCAAAGCAGGACAGAGCCTCTCTACAGGGGATA +
Preference number: 1 (lower is better)
Translates to: QLWEGRSFSHFINYV*VAGAKQDRASLQGI
Trigger: TATCCCCTGTAGAGAGGCTCTGTCCTGCTTTGCTCCAGCCACTCACACATAGTTAATAAAGTGGCTGAAGCTCCTCCCTTCCCAGAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp GTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTaGCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATCTGTCAG +
Preference number: 1 (lower is better)
Translates to: VTSPHLSWFCSCYCN*PSGALLSASVLICQ
Trigger: CTGACAGATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp TTAGTCCTGTTTTCAGGCCCTGAGAGGTGTGACAGCTTCCCTGTGTaGACACAAGTATCACAAATTGGGCCACAGAGCACCAGGCATAGC +
Preference number: 1 (lower is better)
Translates to: LVLFSGPERCDSFPV*TQVSQIGPQSTRHS
Trigger: GCTATGCCTGGTGCTCTGTGGCCCAATTTGTGATACTTGTGTGCACACAGGGAAGCTGTCACACCTCTCAGGGCCTGAAAACAGGACTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTCTGAGTCAGAGGACAACTTGCTaGAGTTGGCTCTCTCCTACTATGGGGTTCCTGGGGATCAAACTC +
Preference number: 1 (lower is better)
Translates to: VCVCVCVCLSQRTTC*SWLSPTMGFLGIKL
Trigger: GAGTTTGATCCCCAGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACACACACACACACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp TCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCTaGAGCTCTTCTTTCAGCCTCTGTTCTCATCTGTCAGCATGCTGG +
Preference number: 1 (lower is better)
Translates to: STPVLVLQLLLQLPI*SSSFSLCSHLSACW
Trigger: CCAGCATGCTGACAGATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp GAGAGCAACAAAAGACCACCTGAGAGCTTCAAATACAAGAAAGGCTaGGGATGCCTGCTGAGACCTCCCATGCTACCTAGAGAGCTCTGG +
Preference number: 1 (lower is better)
Translates to: ESNKRPPESFKYKKG*GCLLRPPMLPRELW
Trigger: CCAGAGCTCTCTAGGTAGCATGGGAGGTCTCAGCAGGCATCCCCAGCCTTTCTTGTATTTGAAGCTCTCAGGTGGTCTTTTGTTGCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp GCCCTATCCAAAATAGTTCCTGCACCTACCTGCTTCTGTCTCAACTaGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTCCCCACAAGG +
Preference number: 1 (lower is better)
Translates to: ALSKIVPAPTCFCLN*QDLLCCLLTPFPTR
Trigger: CCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACAGAAGCAGGTAGGTGCAGGAACTATTTTGGATAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTCTGAGTCAGAGGACAACTTGCTGCAGTTaGCTCTCTCCTACTATGGGGTTCCTGGGGATCAAACTCAGGTCT +
Preference number: 1 (lower is better)
Translates to: VCVCVCLSQRTTCCS*LSPTMGFLGIKLRS
Trigger: AGACCTGAGTTTGATCCCCAGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACACACACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp CTCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTaGGAAGCTGATTCCAGAAGCTGCAGCCTATTTCCTGCCTCGGAG +
Preference number: 1 (lower is better)
Translates to: LSDKATSKHNKGGKT*EADSRSCSLFPASE
Trigger: CTCCGAGGCAGGAAATAGGCTGCAGCTTCTGGAATCAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp AACAAAAGACCACCTGAGAGCTTCAAATACAAGAAAGGCTGGGGATaGCTGCTGAGACCTCCCATGCTACCTAGAGAGCTCTGGGTAAGC +
Preference number: 1 (lower is better)
Translates to: NKRPPESFKYKKGWG*LLRPPMLPRELWVS
Trigger: GCTTACCCAGAGCTCTCTAGGTAGCATGGGAGGTCTCAGCAGGCATCCCCAGCCTTTCTTGTATTTGAAGCTCTCAGGTGGTCTTTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp TCCACAGCAATGAACATGAGAGCTTGTGGCAGCAGCCTCAGGTCCTaGCTCTTGTTCATAGGGACTCATTTCCATGACTTTGCTGCCTCA +
Preference number: 1 (lower is better)
Translates to: STAMNMRACGSSLRS*LLFIGTHFHDFAAS
Trigger: TGAGGCAGCAAAGTCATGGAAATGAGTCCCTATGAACAAGAGGCAGGACCTGAGGCTGCTGCCACAAGCTCTCATGTTCATTGCTGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAGTCAGAGGACAACTTaGTGCAGTTGGCTCTCTCCTACTATGGGGTTCCTGGGGATCAAA +
Preference number: 1 (lower is better)
Translates to: CVCVCVCVCLSQRTT*CSWLSPTMGFLGIK
Trigger: TTTGATCCCCAGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACACACACACACACACACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp AACATTGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTaGAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATC +
Preference number: 1 (lower is better)
Translates to: NIVTSPHLSWFCSCY*NCPSGALLSASVLI
Trigger: GATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACAATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp CGGAGGGAGGGCAGAGTCTTAATTCAGCTAAGAAGCAAAGTCTCATaGCGAACACACACCTCAGTCACGGCACACACAACAATAACATGC +
Preference number: 1 (lower is better)
Translates to: RREGRVLIQLRSKVS*RTHTSVTAHTTITC
Trigger: GCATGTTATTGTTGTGTGTGCCGTGACTGAGGTGTGTGTTCGTCATGAGACTTTGCTTCTTAGCTGAATTAAGACTCTGCCCTCCCTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp CTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTCAGAACCACTaGATTCTTTGTACTGAGGCCAGAATTCACTTGGAACAACTGCCT +
Preference number: 1 (lower is better)
Translates to: LYRGYQSFCPECQNH*ILCTEARIHLEQLP
Trigger: AGGCAGTTGTTCCAAGTGAATTCTGGCCTCAGTACAAAGAATCCAGTGGTTCTGACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp CAAAGGAGCTGCTTGAAGACACCTTGTGTCACAGTCATCTCCTCCTaGCAACACCTTGTGTCACAATCATCTTCTCCTGACAACACCTTG +
Preference number: 1 (lower is better)
Translates to: QRSCLKTPCVTVISS*QHLVSQSSSPDNTL
Trigger: CAAGGTGTTGTCAGGAGAAGATGATTGTGACACAAGGTGTTGTCAGGAGGAGATGACTGTGACACAAGGTGTCTTCAAGCAGCTCCTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp TGCTCACTCAAGGACAAAGCAGGATGCTGGCCAACCACCACTAAGTaGCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCC +
Preference number: 1 (lower is better)
Translates to: CSLKDKAGCWPTTTK*HSLYLSFLYPKRRP
Trigger: GGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGCATCCTGCTTTGTCCTTGAGTGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp TTCACCAAGTCATCTGATGGCCCTGGGGTTCTGATTCTGACTAGTTaGCCTATGTTCGTTCCCTTGTGCTGGAACAATGTGGGCTATTTT +
Preference number: 1 (lower is better)
Translates to: FTKSSDGPGVLILTS*PMFVPLCWNNVGYF
Trigger: AAAATAGCCCACATTGTTCCAGCACAAGGGAACGAACATAGGGCAACTAGTCAGAATCAGAACCCCAGGGCCATCAGATGACTTGGTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp TCTTCACACAGACCCATCTGTACAGATCTGTACACCACCTGTCAATaGAGTCCAGTAACACAGGTGCCAAAGGTTACACATGGATACCAG +
Preference number: 1 (lower is better)
Translates to: SSHRPICTDLYTTCQ*SPVTQVPKVTHGYQ
Trigger: CTGGTATCCATGTGTAACCTTTGGCACCTGTGTTACTGGACTGCATTGACAGGTGGTGTACAGATCTGTACAGATGGGTCTGTGTGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp TCAACTGAACAACATGCCCTATCCAAAATAGTTCCTGCACCTACCTaGTTCTGTCTCAACTGGCAAGACCTCTTATGCTGCCTTCTCACT +
Preference number: 1 (lower is better)
Translates to: STEQHALSKIVPAPT*FCLNWQDLLCCLLT
Trigger: AGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACAGAAGCAGGTAGGTGCAGGAACTATTTTGGATAGGGCATGTTGTTCAGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp GAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTCCATCCAGTaGAGACAAAGAAGACACCATGTGTTTAAACAACACAACCTCCCA +
Preference number: 1 (lower is better)
Translates to: ELTWRTHRNKPCSIQ*RQRRHHVFKQHNLP
Trigger: TGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCTTTGTCTGCACTGGATGGAGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp ATGGGGAAGCATGGAGCCTCCCTAAGACATACAATTTCTCTACAATaGAAAATTCCACTCCTCCTCCTTCTCTACTCTGCTTCCAAGCCT +
Preference number: 1 (lower is better)
Translates to: MGKHGASLRHTISLQ*KIPLLLLLYSASKP
Trigger: AGGCTTGGAAGCAGAGTAGAGAAGGAGGAGGAGTGGAATTTTCCATTGTAGAGAAATTGTATGTCTTAGGGAGGCTCCATGCTTCCCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp GGGGCTCCATTGTCCCTCCCTGGAAACATTCAAATACAAGTACTGTaGCTGCCTGTCCCCATTCTACCTTGTAATAAATACTTACAGGTG +
Preference number: 1 (lower is better)
Translates to: GAPLSLPGNIQIQVL*LPVPILPCNKYLQV
Trigger: CACCTGTAAGTATTTATTACAAGGTAGAATGGGGACAGGCAGCCACAGTACTTGTATTTGAATGTTTCCAGGGAGGGACAATGGAGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 90 bp ACACACACACACACACACACACACACACACACCATTATGCCGAGATaGGCTTTCAGGATTTCTAGCAGATTCTTCTTAAACCAAACCTGC +
Preference number: 1 (lower is better)
Translates to: THTHTHTHTHTIMPR*AFRISSRFFLNQTC
Trigger: GCAGGTTTGGTTTAAGAAGAATCTGCTAGAAATCCTGAAAGCCCATCTCGGCATAATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp TGGTGGGGACTTGCTGAACACTCCACGTTGCTGGTCACTAGCTTCTaGGAAACAAAGAACAATGTCAAGTGTTTAGCACACACTCTTAAT +
Preference number: 1 (lower is better)
Translates to: WWGLAEHSTLLVTSF*ETKNNVKCLAHTLN
Trigger: ATTAAGAGTGTGTGCTAAACACTTGACATTGTTCTTTGTTTCTCAGAAGCTAGTGACCAGCAACGTGGAGTGTTCAGCAAGTCCCCACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp AAAGAAATCAGGATGGGTGAGGGCAAGGGCATCTTGCTCACATCCTaGTTAGAAAATACCATCCAATCCAAACAAGCAAAGCTTCACACT +
Preference number: 1 (lower is better)
Translates to: KEIRMGEGKGILLTS*LENTIQSKQAKLHT
Trigger: AGTGTGAAGCTTTGCTTGTTTGGATTGGATGGTATTTTCTAAGCAGGATGTGAGCAAGATGCCCTTGCCCTCACCCATCCTGATTTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 90 bp CTCCATTGTCCCTCCCTGGAAACATTCAAATACAAGTACTGTGGCTaGCTGTCCCCATTCTACCTTGTAATAAATACTTACAGGTGTGTA +
Preference number: 1 (lower is better)
Translates to: LHCPSLETFKYKYCG*LSPFYLVINTYRCV
Trigger: TACACACCTGTAAGTATTTATTACAAGGTAGAATGGGGACAGGCAGCCACAGTACTTGTATTTGAATGTTTCCAGGGAGGGACAATGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp GAAATCACAAACCACAAACGAAACAGCCAAGAAGGTGACAAAACTTaGAATTCCCCATTATCCTGGATGTATTTGCTAAGGACACCACAC +
Preference number: 1 (lower is better)
Translates to: EITNHKRNSQEGDKT*NSPLSWMYLLRTPH
Trigger: GTGTGGTGTCCTTAGCAAATACATCCAGGATAATGGGGAATTTCAAGTTTTGTCACCTTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 90 bp TTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAAGTTCTATaGTCAAATGCTCCAAGAGATCTGAAAACGAGCCTTCTGCACTAT +
Preference number: 1 (lower is better)
Translates to: FIYPFFIPREDPQVL*SNAPRDLKTSLLHY
Trigger: ATAGTGCAGAAGGCTCGTTTTCAGATCTCTTGGAGCATTTGATCATAGAACTTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 90 bp TGGGTGTGGAAGGGAGCAGCCCCACCCTGCAGGCATGGTGGGGACTaGCTGAACACTCCACGTTGCTGGTCACTAGCTTCTGAGAAACAA +
Preference number: 2 (lower is better)
Translates to: WVWKGAAPPCRHGGD*LNTPRCWSLASEKQ
Trigger: TTGTTTCTCAGAAGCTAGTGACCAGCAACGTGGAGTGTTCAGCAAGTCCCCACCATGCCTGCAGGGTGGGGCTGCTCCCTTCCACACCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTACCCTGCAGGCATGGTaGGGACTTGCTGAACACTCC +
Preference number: 2 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECTLQAW*GLAEHS
Trigger: GGAGTGTTCAGCAAGTCCCCACCATGCCTGCAGGGT...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGTTTATAAGCCAAGAATaGGGAAGCATGGAGCCTCCC +
Preference number: 2 (lower is better)
Translates to: GMALCLSTATRAEWGRGEFISQE*GSMEPP
Trigger: GGGAGGCTCCATGCTTCCCCATTCTTGGCTTATAAA...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 90 bp ATGGTCCAGGGTCCTGTAGGGAAACACCACTGCTCTCTCCTCCCCTaGCCTCTCTTCTTCTCTGTTCTCCAGGCTACGTCTCTCACAATA +
Preference number: 2 (lower is better)
Translates to: MVQGPVGKHHCSLLP*PLFFSVLQATSLTI
Trigger: TATTGTGAGAGACGTAGCCTGGAGAACAGAGAAGAAGAGAGGCAAGGGGAGGAGAGAGCAGTGGTGTTTCCCTACAGGACCCTGGACCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR GCA 90 bp TGTCTCAACTGGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTCCCCACAAGGAGCAGCCTCAGGTCCTaGCTCTTGTTCATAGGGACT +
Preference number: 2 (lower is better)
Translates to: CLNWQDLLCCLLTPFPTRSSLRS*LLFIGT
Trigger: AGTCCCTATGAACAAGAGGCAGGACCTGAGGCTGCT...CCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCGAGTTAAGGAGGGGGTaGGAGGCTCCCAGCCTGGTT +
Preference number: 2 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCELRRG*EAPSLV
Trigger: AACCAGGCTGGGAGCCTCCCACCCCCTCCTTAACTC...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTCTGAGTCAGAGGACAACTTGCTGCAGTaGGCTCTCTCCTACTATGGGGTTCCTGGGGATCAAACTCAGGTC +
Preference number: 2 (lower is better)
Translates to: CVCVCVSESEDNLLQ*ALSYYGVPGDQTQV
Trigger: GACCTGAGTTTGATCCCCAGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACACACACACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAGTCAGAGGACAACTaGCTGCAGTTGGCTCTCTCCTACTATGGGGTTCCTGGGGATCAA +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVSESEDN*LQLALSYYGVPGDQ
Trigger: TTGATCCCCAGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACACACACACACACACACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR GCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCGAAGAGCAGTTGGGGTaGCAACACGAGGCTCTGTCC +
Preference number: 2 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCEEQLG*QHEALS
Trigger: GGACAGAGCCTCGTGTTGGCACCCCAACTGCTCTTC...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTGCTCACACCAATCTCTaGGACTCGGGCGGGCTGCAG +
Preference number: 2 (lower is better)
Translates to: FLKEGVSSPGEHIETNPAAHTNL*DSGGLQ
Trigger: CTGCAGCCCGCCCGAGTCCCAGAGATTGGTGTGAGC...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 90 bp GCAATGAACATGAGAGCTTGTGGCAGCAGCCTCAGGTCCTGCCTCTaGTTCATAGGGACTCATTTCCATGACTTTGCTGCCTCACTTCAG +
Preference number: 2 (lower is better)
Translates to: AMNMRACGSSLRSCL*FIGTHFHDFAASLQ
Trigger: CTGAAGTGAGGCAGCAAAGTCATGGAAATGAGTCCCTATGAACAAGAGGCAGGACCTGAGGCTGCTGCCACAAGCTCTCATGTTCATTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTACAGGGAAAAAGAATTaGTCAGGGATGGCACTGTGC +
Preference number: 2 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECTGKKN*SGMALC
Trigger: GCACAGTGCCATCCCTGATCAATTCTTTTTCCCTGT...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp TGTCTCAACTGGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTCCCCACAAGGAAGAATGGGGAAGCATaGAGCCTCCCTAAGACATAC +
Preference number: 2 (lower is better)
Translates to: CLNWQDLLCCLLTPFPTRKNGEA*SLPKTY
Trigger: GTATGTCTTAGGGAGGCTCCATGCTTCCCCATTCTT...CCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 90 bp ATGGCTCTCTGCAGCCTACTCACAAAGGAGCTGCTTGAAGACACCTaGTGTCACAGTCATCTCCTCCTGACAACACCTTGTGTCACAATC +
Preference number: 2 (lower is better)
Translates to: MALCSLLTKELLEDT*CHSHLLLTTPCVTI
Trigger: GATTGTGACACAAGGTGTTGTCAGGAGGAGATGACTGTGACACAAGGTGTCTTCAAGCAGCTCCTTTGTGAGTAGGCTGCAGAGAGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATTATGTCAGCAACTCATaGACTCCTCAGCCAGGTATC +
Preference number: 2 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYYVSNS*TPQPGI
Trigger: GATACCTGGCTGAGGAGTCCATGAGTTGCTGACATA...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATCATCATGGGTTCCTGTaGCACCTATTCACAAGGAAG +
Preference number: 2 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYHHGFL*HLFTRK
Trigger: CTTCCTTGTGAATAGGTGCCACAGGAACCCATGATG...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTAACACTCCACGTTGCTaGTCACTAGCTTCTGAGAAA +
Preference number: 2 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECNTPRC*SLASEK
Trigger: TTTCTCAGAAGCTAGTGACCAGCAACGTGGAGTGTT...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR GCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGACACCTGTCCTGGTTTTaGAGTTGCTACTGCAACTGC +
Preference number: 2 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGHLSWF*SCYCNC
Trigger: GCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTG...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACGCAACCAGGGCAGAATaGGGCAGGGGAGAGCAACAA +
Preference number: 2 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHATRAE*GRGEQQ
Trigger: TTGTTGCTCTCCCCTGCCCCATTCTGCCCTGGTTGC...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACCTGGGCAGCTTCTTCTaGGGTTTCCAGGAAGCCAGC +
Preference number: 2 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHLGSFF*GFQEAS
Trigger: GCTGGCTTCCTGGAAACCCCAGAAGAAGCTGCCCAG...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 90 bp TCTGAACAACCAGGAGGGAGAACCTGGCCTCGTTTCTCTGGTGCTTaGAGGACCATTCAACAGGCACTTTTTCTAGTGCTTTCAGTTTGT +
Preference number: 2 (lower is better)
Translates to: SEQPGGRTWPRFSGA*RTIQQALFLVLSVC
Trigger: ACAAACTGAAAGCACTAGAAAAAGTGCCTGTTGAATGGTCCTCAAAGCACCAGAGAAACGAGGCCAGGTTCTCCCTCCTGGTTGTTCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTGTGTGTCTACCAGTCTaGTGGGTTATGAAACAAATT +
Preference number: 2 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECVCLPV*WVMKQI
Trigger: AATTTGTTTCATAACCCATCAGACTGGTAGACACAC...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGCTCAACACGGACTCTTaGACAAAAGCCACAGTTCAC +
Preference number: 2 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLLNTDS*TKATVH
Trigger: GTGAACTGTGGCTTTTGTTCAAGAGTCCGTGTTGAG...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR GCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCACACACACACCATTATaGCGAGATGGGCTTTCAGGA +
Preference number: 2 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCTHTPL*RDGLSG
Trigger: TCCTGAAAGCCCATCTCGGCATAATGGTGTGTGTGT...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp TCTTGGCAGCTTAGTGCTATGAACCTCCAGAGAGAAATAGTGCTTACACATAGAGAGGCTCTGTCCATCTaGACACCACAGCAAGGATGG +
Preference number: 2 (lower is better)
Translates to: SWQLSAMNLQREIVLTHREALSI*TPQQGW
Trigger: CCATCCTTGCTGTGGTGTCCAGATGGACAGAGCCTC...TCTATGTGTAAGCACTATTTCTCTCTGGAGGTTCATAGCACTAAGCTGCCAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGTGCACATCAGAGGCATaGTGTTATGTCAGCAACTCA +
Preference number: 2 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLCTSEA*CYVSNS
Trigger: TGAGTTGCTGACATAACATCATGCCTCTGATGTGCA...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGACACTTAAGAGGGACTTaGCGTCACAGAATTACCACT +
Preference number: 2 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGHLRGT*RHRITT
Trigger: AGTGGTAATTCTGTGACGTCAAGTCCCTCTTAAGTG...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp TCTTGGCAGCTTAGTGCTATGAACCTCCAGAGAGAAATAGTGCTTACACATAGATCCAGCTTCTGCATCTaGACAACCAGGAGGGAGAAC +
Preference number: 2 (lower is better)
Translates to: SWQLSAMNLQREIVLTHRSSFCI*TTRREN
Trigger: GTTCTCCCTCCTGGTTGTTCAGATGCAGAAGCTGGA...TCTATGTGTAAGCACTATTTCTCTCTGGAGGTTCATAGCACTAAGCTGCCAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTACATGGTCTCAGGGCTaGAAGATCTCACCAATTCCC +
Preference number: 2 (lower is better)
Translates to: FLKEGVSSPGEHIETNPATWSQG*KISPIP
Trigger: GGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGT...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGATTGCAGTTAAAGCCCTaGTCTGTGTCCCCTTTGTTT +
Preference number: 2 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGLQLKP*SVSPLF
Trigger: AAACAAAGGGGACACAGACCAGGGCTTTAACTGCAA...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCCTGAGCCTCTTGTTCTaGGTCTTTGCTTTAAGTGAA +
Preference number: 2 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCLSLLF*VFALSE
Trigger: TTCACTTAAAGCAAAGACTCAGAACAAGAGGCTCAG...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCCTGGTCACTAGCTTCTaGGAAACAAAGAACAATGTC +
Preference number: 2 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCLVTSF*ETKNNV
Trigger: GACATTGTTCTTTGTTTCTCAGAAGCTAGTGACCAG...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGTTTATTAACTATGTGTaGGTGGCTGGAGCAAAGCAG +
Preference number: 2 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLFINYV*VAGAKQ
Trigger: CTGCTTTGCTCCAGCCACTCACACATAGTTAATAAA...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR GCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACCCTCCTTCTCTACTCTaGTTCCAAGCCTACATGCGT +
Preference number: 2 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHPPSLL*FQAYMR
Trigger: ACGCATGTAGGCTTGGAAGCAGAGTAGAGAAGGAGG...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR GCA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCACTTTCTGTCTGTGTGTaGAATGTGTCTGGAACACGT +
Preference number: 2 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPLSVCV*NVSGTR
Trigger: ACGTGTTCCAGACACATTGCACACACAGACAGAAAG...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp AAGCAAAGCTTCACACTCTCTGAAATCACAAACCACAAACGAAACAGCCAAGAACTGCAACTGCCCATCTaGAGCTCTTCTTTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: KQSFTLSEITNHKRNSQELQLPI*SSSFSL
Trigger: GAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAG...TTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 90 bp ACAGATAAGCTCAAAGAAATCAGGATGGGTGAGGGCAAGGGCATCTaGCTCACATCCTGCTTAGAAAATACCATCCAATCCAAACAAGCA +
Preference number: 2 (lower is better)
Translates to: TDKLKEIRMGEGKGI*LTSCLENTIQSKQA
Trigger: TGCTTGTTTGGATTGGATGGTATTTTCTAAGCAGGATGTGAGCAAGATGCCCTTGCCCTCACCCATCCTGATTTCTTTGAGCTTATCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCCAGTCTGATGGGTTATaGAACAAATTCACAGGGAAA +
Preference number: 2 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCQSDGL*NKFTGK
Trigger: TTTCCCTGTGAATTTGTTTCATAACCCATCAGACTG...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp TCTTGGCAGCTTAGTGCTATGAACCTCCAGAGAGAAATAGTGCTTACACATAGAATGCTCCAAGAGATCTaGAAACGAGCCTTCTGCACT +
Preference number: 2 (lower is better)
Translates to: SWQLSAMNLQREIVLTHRMLQEI*KRAFCT
Trigger: AGTGCAGAAGGCTCGTTTTCAGATCTCTTGGAGCAT...TCTATGTGTAAGCACTATTTCTCTCTGGAGGTTCATAGCACTAAGCTGCCAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACTCAAAGAAATCAGGATaGGTGAGGGCAAGGGCATCT +
Preference number: 2 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHSKKSG*VRARAS
Trigger: AGATGCCCTTGCCCTCACCCATCCTGATTTCTTTGA...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTGACCCTCAAGTTCTATaGTCAAATGCTCCAAGAGAT +
Preference number: 2 (lower is better)
Translates to: FLKEGVSSPGEHIETNPADPQVL*SNAPRD
Trigger: ATCTCTTGGAGCATTTGATCATAGAACTTGAGGGTC...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAATTGTTTTCAGACAACTaGAACAGACTGACAACGCAG +
Preference number: 2 (lower is better)
Translates to: LSATAFIYPFFIPREDPQLFSDN*NRLTTQ
Trigger: CTGCGTTGTCAGTCTGTTTCAGTTGTCTGAAAACAA...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR TCA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAACAACAAAAGACCACCTaGGAGCTTCAAATACAAGAA +
Preference number: 2 (lower is better)
Translates to: LSATAFIYPFFIPREDPQQQKTT*ELQIQE
Trigger: TTCTTGTATTTGAAGCTCTCAGGTGGTCTTTTGTTG...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CCA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAAACAATTTCTCTACAATaGAAAATTCCACTCCTCCTC +
Preference number: 2 (lower is better)
Translates to: LSATAFIYPFFIPREDPQTISLQ*KIPLLL
Trigger: GAGGAGGAGTGGAATTTTCCATTGTAGAGAAATTGT...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GGGTGGGAGGCTCCCAGCCTGGTTCCCACTGCCAAGTaGAGTGTGGGTAGTCTAGTCCCACCTCCTCTGTCT +
Preference number: 3 (lower is better)
Translates to: GWEAPSLVPTAK*SVGSLVPPPLS
Trigger: AGACAGAGGAGGTGGGACTAGACTACCCACACTCCACTTGGCAGTGGGAACCAGGCTGGGAGCCTCCCACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GGTGTGGAAGGGAGCAGCCCCACCCTGCAGGCATGGTaGGGACTTGCTGAACACTCCACGTTGCTGGTCACT +
Preference number: 3 (lower is better)
Translates to: GVEGSSPTLQAW*GLAEHSTLLVT
Trigger: AGTGACCAGCAACGTGGAGTGTTCAGCAAGTCCCCACCATGCCTGCAGGGTGGGGCTGCTCCCTTCCACACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GTCCCACCATTCCCTGTCTCCACCCCTAAGGAAAGCTaGGTGTGGAAGGGAGCAGCCCCACCCTGCAGGCAT +
Preference number: 3 (lower is better)
Translates to: VPPFPVSTPKES*VWKGAAPPCRH
Trigger: ATGCCTGCAGGGTGGGGCTGCTCCCTTCCACACCCAGCTTTCCTTAGGGGTGGAGACAGGGAATGGTGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp CCAGATCAGCCTTATCTGACTGCTCACACCAATCTCTaGGACTCGGGCGGGCTGCAGACAGCGTCCCCAGCA +
Preference number: 3 (lower is better)
Translates to: PDQPYLTAHTNL*DSGGLQTASPA
Trigger: TGCTGGGGACGCTGTCTGCAGCCCGCCCGAGTCCCAGAGATTGGTGTGAGCAGTCAGATAAGGCTGATCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp AATGAGAATAGGAATCCACTGAAAGGCTGGCCTGGGTaGACCCCGCACACACACACACACCCGGCCCCCTTG +
Preference number: 3 (lower is better)
Translates to: NENRNPLKGWPG*TPHTHTHPAPL
Trigger: CAAGGGGGCCGGGTGTGTGTGTGTGTGCGGGGTGCACCCAGGCCAGCCTTTCAGTGGATTCCTATTCTCATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp AGGCTGCAAGATCTGAGAGAAGAGTTAAGGAGGGGGTaGGAGGCTCCCAGCCTGGTTCCCACTGCCAAGTGG +
Preference number: 3 (lower is better)
Translates to: RLQDLREELRRG*EAPSLVPTAKW
Trigger: CCACTTGGCAGTGGGAACCAGGCTGGGAGCCTCCCACCCCCTCCTTAACTCTTCTCTCAGATCTTGCAGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp GGTGCACCCCGCACACACACACACACCCGGCCCCCTTaGAGCCTGGCTTCTGAGGTTTCTTATTACACAACC +
Preference number: 3 (lower is better)
Translates to: GAPRTHTHTRPP*SLASEVSYYTT
Trigger: GGTTGTGTAATAAGAAACCTCAGAAGCCAGGCTTCAAGGGGGCCGGGTGTGTGTGTGTGTGCGGGGTGCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp ACATGGATACCAGAGTCCGCTGGGAAGTGCGGCACATaGCCCCAGCAGAGACACACACACACAACCACACCT +
Preference number: 3 (lower is better)
Translates to: TWIPESAGKCGT*PQQRHTHTTTP
Trigger: AGGTGTGGTTGTGTGTGTGTGTCTCTGCTGGGGGCATGTGCCGCACTTCCCAGCGGACTCTGGTATCCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GGCGGGCTGCAGACAGCGTCCCCAGCACAGCAGCTCTaGGAAGGGAGGAGCTTCAGCCACTTTATTAACTAT +
Preference number: 3 (lower is better)
Translates to: GGLQTASPAQQL*EGRSFSHFINY
Trigger: ATAGTTAATAAAGTGGCTGAAGCTCCTCCCTTCCCAGAGCTGCTGTGCTGGGGACGCTGTCTGCAGCCCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp ATGGGCTGTATGCCTCCTGGGTCCAGCTTCTGCATCTaGACAACCAGGAGGGAGAACCTGGCCTCGTTTCTC +
Preference number: 3 (lower is better)
Translates to: MGCMPPGSSFCI*TTRRENLASFL
Trigger: GAGAAACGAGGCCAGGTTCTCCCTCCTGGTTGTTCAGATGCAGAAGCTGGACCCAGGAGGCATACAGCCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CAA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGACACCTGTCCTGGTTTaGCAGTTGCTACTGCAACTG +
Preference number: 3 (lower is better)
Translates to: GMALCLSTATRAEWGRGETPVLV*QLLLQL
Trigger: CAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGT...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp AGTTCTGCTAAGCAAAGGTGGGAAGAGCAGTTGGGGTaGCAACACGAGGCTCTGTCCATCTGGACACCACAG +
Preference number: 3 (lower is better)
Translates to: SSAKQRWEEQLG*QHEALSIWTPQ
Trigger: CTGTGGTGTCCAGATGGACAGAGCCTCGTGTTGGCACCCCAACTGCTCTTCCCACCTTTGCTTAGCAGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp GTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTaGGGGACGGAACAACACAGGTCCCACCATTCCCTG +
Preference number: 3 (lower is better)
Translates to: VKPYTWAPKRDL*GTEQHRSHHSL
Trigger: CAGGGAATGGTGGGACCTGTGTTGTTCCGTCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp CCTAGAGAGCTCTGGGTAAGCCATCATGGGTTCCTGTaGCACCTATTCACAAGGAAGTCTTCCCCACAGGGC +
Preference number: 3 (lower is better)
Translates to: PRELWVSHHGFL*HLFTRKSSPQG
Trigger: GCCCTGTGGGGAAGACTTCCTTGTGAATAGGTGCCACAGGAACCCATGATGGCTTACCCAGAGCTCTCTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp ACACACACACACCCGGCCCCCTTGAAGCCTGGCTTCTaGGGTTTCTTATTACACAACCTGTTCCACGGAGCT +
Preference number: 3 (lower is better)
Translates to: THTHPAPLKPGF*GFLLHNLFHGA
Trigger: AGCTCCGTGGAACAGGTTGTGTAATAAGAAACCTCAGAAGCCAGGCTTCAAGGGGGCCGGGTGTGTGTGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp CCACCTGAGAGCTTCAAATACAAGAAAGGCTGGGGATaGCTGCTGAGACCTCCCATGCTACCTAGAGAGCTC +
Preference number: 3 (lower is better)
Translates to: PPESFKYKKGWG*LLRPPMLPREL
Trigger: GAGCTCTCTAGGTAGCATGGGAGGTCTCAGCAGGCATCCCCAGCCTTTCTTGTATTTGAAGCTCTCAGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp TGTGTGTGTGTGTGTCTGAGTCAGAGGACAACTTGCTaGAGTTGGCTCTCTCCTACTATGGGGTTCCTGGGG +
Preference number: 3 (lower is better)
Translates to: CVCVCLSQRTTC*SWLSPTMGFLG
Trigger: CCCCAGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACACACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp CTCACTCCTATGCTGGGAGATAGCCTAAGTTTGGGGTaGCTCAGACATGGTCTCAGGGCTGGAAGATCTCAC +
Preference number: 3 (lower is better)
Translates to: LTPMLGDSLSLG*LRHGLRAGRSH
Trigger: GTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCACCCCAAACTTAGGCTATCTCCCAGCATAGGAGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp ATGCAGTCCAGTAACACAGGTGCCAAAGGTTACACATaGATACCAGAGTCCGCTGGGAAGTGCGGCACATGC +
Preference number: 3 (lower is better)
Translates to: MQSSNTGAKGYT*IPESAGKCGTC
Trigger: GCATGTGCCGCACTTCCCAGCGGACTCTGGTATCCATGTGTAACCTTTGGCACCTGTGTTACTGGACTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp GATGGCTCTCTGCAGCCTACTCACAAAGGAGCTGCTTaGAGACACCTTGTGTCACAGTCATCTCCTCCTGAC +
Preference number: 3 (lower is better)
Translates to: DGSLQPTHKGAA*RHLVSQSSPPD
Trigger: GTCAGGAGGAGATGACTGTGACACAAGGTGTCTTCAAGCAGCTCCTTTGTGAGTAGGCTGCAGAGAGCCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp AAGCTGGTACCAGTGTTGGCCCTGGTTCACAGAATTTaGCACAGATTCTGTGAGCACCTCACTGAGGAGGGG +
Preference number: 3 (lower is better)
Translates to: KLVPVLALVHRI*HRFCEHLTEEG
Trigger: CCCCTCCTCAGTGAGGTGCTCACAGAATCTGTGTCAAATTCTGTGAACCAGGGCCAACACTGGTACCAGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp CCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTaGCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTC +
Preference number: 3 (lower is better)
Translates to: PHLSWFCSCYCN*PSGALLSASVL
Trigger: GAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp ACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTaGAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCT +
Preference number: 3 (lower is better)
Translates to: TSPHLSWFCSCY*NCPSGALLSAS
Trigger: AGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp CACACGACACCTGGAAGTATTCAGACATCACCACACTaGTCACTCAAGGACAAAGCAGGATGCTGGCCAACC +
Preference number: 3 (lower is better)
Translates to: HTTPGSIQTSPH*SLKDKAGCWPT
Trigger: GGTTGGCCAGCATCCTGCTTTGTCCTTGAGTGAGCAGTGTGGTGATGTCTGAATACTTCCAGGTGTCGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp GTGTGTGTGTGTGTGTGTCTGAGTCAGAGGACAACTTaGTGCAGTTGGCTCTCTCCTACTATGGGGTTCCTG +
Preference number: 3 (lower is better)
Translates to: VCVCVCLSQRTT*CSWLSPTMGFL
Trigger: CAGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACACACACACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GCACCTATTCACAAGGAAGTCTTCCCCACAGGGCGATaGGGTGTAATTGTCAACCTCCTAGCAAGAGTGTGG +
Preference number: 3 (lower is better)
Translates to: APIHKEVFPTGR*GVIVNLLARVW
Trigger: CCACACTCTTGCTAGGAGGTTGACAATTACACCCCATCGCCCTGTGGGGAAGACTTCCTTGTGAATAGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp CAATTACTAAATGAGAATAGGAATCCACTGAAAGGCTaGCCTGGGTGCACCCCGCACACACACACACACCCG +
Preference number: 3 (lower is better)
Translates to: QLLNENRNPLKG*PGCTPHTHTHP
Trigger: CGGGTGTGTGTGTGTGTGCGGGGTGCACCCAGGCCAGCCTTTCAGTGGATTCCTATTCTCATTTAGTAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GGGTTCCTGGGGATCAAACTCAGGTCTTGGCTTTGGTaGAAGTGCCTTTTCACCAAGTCATCTGATGGCCCT +
Preference number: 3 (lower is better)
Translates to: GFLGIKLRSWLW*KCLFTKSSDGP
Trigger: AGGGCCATCAGATGACTTGGTGAAAAGGCACTTCCACCAAAGCCAAGACCTGAGTTTGATCCCCAGGAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CAA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATGAGGGCAAGGGCATCTaGCTCACATCCTGCTTAGAA +
Preference number: 3 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYEGKGI*LTSCLE
Trigger: TTCTAAGCAGGATGTGAGCAAGATGCCCTTGCCCTC...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp CAGGTCCTGCCTCTTGTTCATAGGGACTCATTTCCATaGCTTTGCTGCCTCACTTCAGGTAAGTCGTGTCCC +
Preference number: 3 (lower is better)
Translates to: QVLPLVHRDSFP*LCCLTSGKSCP
Trigger: GGGACACGACTTACCTGAAGTGAGGCAGCAAAGTCATGGAAATGAGTCCCTATGAACAAGAGGCAGGACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp GTGACTGAGCCTCTTGTTCTGAGTCTTTGCTTTAAGTaGAGCTTGGAGATGGGCTGTATGCCTCCTGGGTCC +
Preference number: 3 (lower is better)
Translates to: VTEPLVLSLCFK*SLEMGCMPPGS
Trigger: GGACCCAGGAGGCATACAGCCCATCTCCAAGCTTCACTTAAAGCAAAGACTCAGAACAAGAGGCTCAGTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp CTCCTGACAACACCTTGTGTCACAATCATCTTCTCCTaGCAACACCTTGTGTCATGGCCACCTCCTCCGTCT +
Preference number: 3 (lower is better)
Translates to: LLTTPCVTIIFS*QHLVSWPPPPS
Trigger: AGACGGAGGAGGTGGCCATGACACAAGGTGTTGTCAGGAGAAGATGATTGTGACACAAGGTGTTGTCAGGAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp CTTAGGTCTGTAGTGTATGCAGGGGTTGCACACATATaGAGCCTGGAGAGAGAAGCGGGCTTGAAAACGAGG +
Preference number: 3 (lower is better)
Translates to: LRSVVYAGVAHI*SLEREAGLKTR
Trigger: CCTCGTTTTCAAGCCCGCTTCTCTCTCCAGGCTTCATATGTGTGCAACCCCTGCATACACTACAGACCTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp GGTAACATTGTGACGAGTCCACACCTGTCCTGGTTTTaGAGTTGCTACTGCAACTGCCCATCTGGAGCTCTT +
Preference number: 3 (lower is better)
Translates to: GNIVTSPHLSWF*SCYCNCPSGAL
Trigger: AAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACAATGTTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp CCTAAGTTTGGGGTGGCTCAGACATGGTCTCAGGGCTaGAAGATCTCACCAATTCCCCATCTCTATACCCTT +
Preference number: 3 (lower is better)
Translates to: PKFGVAQTWSQG*KISPIPHLYTL
Trigger: AAGGGTATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCACCCCAAACTTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GGAGGAGCTTCAGCCACTTTATTAACTATGTGTGAGTaGCTGGAGCAAAGCAGGACAGAGCCTCTCTACAGG +
Preference number: 3 (lower is better)
Translates to: GGASATLLTMCE*LEQSRTEPLYR
Trigger: CCTGTAGAGAGGCTCTGTCCTGCTTTGCTCCAGCCACTCACACATAGTTAATAAAGTGGCTGAAGCTCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp TGTGTGTGTCTGAGTCAGAGGACAACTTGCTGCAGTTaGCTCTCTCCTACTATGGGGTTCCTGGGGATCAAA +
Preference number: 3 (lower is better)
Translates to: CVCLSQRTTCCS*LSPTMGFLGIK
Trigger: TTTGATCCCCAGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp GAAGGGAGGAGCTTCAGCCACTTTATTAACTATGTGTaGGTGGCTGGAGCAAAGCAGGACAGAGCCTCTCTA +
Preference number: 3 (lower is better)
Translates to: EGRSFSHFINYV*VAGAKQDRASL
Trigger: TAGAGAGGCTCTGTCCTGCTTTGCTCCAGCCACTCACACATAGTTAATAAAGTGGCTGAAGCTCCTCCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp ATTGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTaGTACTGCAACTGCCCATCTGGAGCTCTTCTTTCA +
Preference number: 3 (lower is better)
Translates to: IVTSPHLSWFCS*YCNCPSGALLS
Trigger: TGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp AGCCAGGTATCTCTAGCTCACAATAAGGCTGACAGCTaGAGTTCTGCTAAGCAAAGGTGGGAAGAGCAGTTG +
Preference number: 3 (lower is better)
Translates to: SQVSLAHNKADS*SSAKQRWEEQL
Trigger: CAACTGCTCTTCCCACCTTTGCTTAGCAGAACTGCAGCTGTCAGCCTTATTGTGAGCTAGAGATACCTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp GCAGGGGGCTGGAACAGGAGACTTTCTGTCTGTGTGTaGAATGTGTCTGGAACACGTACACTAGAATTTGAG +
Preference number: 3 (lower is better)
Translates to: AGGWNRRLSVCV*NVSGTRTLEFE
Trigger: CTCAAATTCTAGTGTACGTGTTCCAGACACATTGCACACACAGACAGAAAGTCTCCTGTTCCAGCCCCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp ACAACCAGGAGGGAGAACCTGGCCTCGTTTCTCTGGTaGTTTGAGGACCATTCAACAGGCACTTTTTCTAGT +
Preference number: 3 (lower is better)
Translates to: TTRRENLASFLW*FEDHSTGTFSS
Trigger: ACTAGAAAAAGTGCCTGTTGAATGGTCCTCAAAGCACCAGAGAAACGAGGCCAGGTTCTCCCTCCTGGTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp GTCTTTGCTTTAAGTGAAGCTTGGAGATGGGCTGTATaGCTCCTGGGTCCAGCTTCTGCATCTGAACAACCA +
Preference number: 3 (lower is better)
Translates to: VFALSEAWRWAV*LLGPASASEQP
Trigger: TGGTTGTTCAGATGCAGAAGCTGGACCCAGGAGGCATACAGCCCATCTCCAAGCTTCACTTAAAGCAAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp TGCAGGCATGGTGGGGACTTGCTGAACACTCCACGTTaGTGGTCACTAGCTTCTGAGAAACAAAGAACAATG +
Preference number: 3 (lower is better)
Translates to: CRHGGDLLNTPR*WSLASEKQRTM
Trigger: CATTGTTCTTTGTTTCTCAGAAGCTAGTGACCAGCAACGTGGAGTGTTCAGCAAGTCCCCACCATGCCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp TCATCTGATGGCCCTGGGGTTCTGATTCTGACTAGTTaGCCTATGTTCGTTCCCTTGTGCTGGAACAATGTG +
Preference number: 3 (lower is better)
Translates to: SSDGPGVLILTS*PMFVPLCWNNV
Trigger: CACATTGTTCCAGCACAAGGGAACGAACATAGGGCAACTAGTCAGAATCAGAACCCCAGGGCCATCAGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCTaGAGCTCTTCTTTCAGCCTCTGTTCTCATCTGTCA +
Preference number: 3 (lower is better)
Translates to: VLVLQLLLQLPI*SSSFSLCSHLS
Trigger: TGACAGATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CAA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAGTCCTGGTTTTGCAGTaGCTACTGCAACTGCCCATC +
Preference number: 3 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPVLVLQ*LLQLPI
Trigger: GATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGAC...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp ATGAGTCCTAGGACACATGATCCAAGCAGAGCTCTCTaGGCCAAGCTATTTTCAGTGCTGCACTTAAGAGGG +
Preference number: 3 (lower is better)
Translates to: MSPRTHDPSRAL*AKLFSVLHLRG
Trigger: CCCTCTTAAGTGCAGCACTGAAAATAGCTTGGCTCAGAGAGCTCTGCTTGGATCATGTGTCCTAGGACTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp ATGAACATGAGAGCTTGTGGCAGCAGCCTCAGGTCCTaGCTCTTGTTCATAGGGACTCATTTCCATGACTTT +
Preference number: 3 (lower is better)
Translates to: MNMRACGSSLRS*LLFIGTHFHDF
Trigger: AAAGTCATGGAAATGAGTCCCTATGAACAAGAGGCAGGACCTGAGGCTGCTGCCACAAGCTCTCATGTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp TGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTaGTCCATCCAGTGCAGACAAAGAAGACACCATGTG +
Preference number: 3 (lower is better)
Translates to: CELTWRTHRNKP*SIQCRQRRHHV
Trigger: CACATGGTGTCTTCTTTGTCTGCACTGGATGGAGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GTAGAGATGAGACAGATAAGCTCAAAGAAATCAGGATaGGTGAGGGCAAGGGCATCTTGCTCACATCCTGCT +
Preference number: 3 (lower is better)
Translates to: VEMRQISSKKSG*VRARASCSHPA
Trigger: AGCAGGATGTGAGCAAGATGCCCTTGCCCTCACCCATCCTGATTTCTTTGAGCTTATCTGTCTCATCTCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp AAAATAGTTCCTGCACCTACCTGCTTCTGTCTCAACTaGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTC +
Preference number: 3 (lower is better)
Translates to: KIVPAPTCFCLN*QDLLCCLLTPF
Trigger: GAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACAGAAGCAGGTAGGTGCAGGAACTATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp AGGCATGGTGGGGACTTGCTGAACACTCCACGTTGCTaGTCACTAGCTTCTGAGAAACAAAGAACAATGTCA +
Preference number: 3 (lower is better)
Translates to: RHGGDLLNTPRC*SLASEKQRTMS
Trigger: TGACATTGTTCTTTGTTTCTCAGAAGCTAGTGACCAGCAACGTGGAGTGTTCAGCAAGTCCCCACCATGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CAA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGCACAGGGAAAAAGAATaGATCAGGGATGGCACTGTG +
Preference number: 3 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLHREKE*IRDGTV
Trigger: CACAGTGCCATCCCTGATCAATTCTTTTTCCCTGTG...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CAA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGACTTCCCTTTCTGGGTTaGTCCCCAACATTAATAGGA +
Preference number: 3 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGLPFLG*SPTLIG
Trigger: TCCTATTAATGTTGGGGACAAACCCAGAAAGGGAAG...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CAA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAAAGCCACAGTTCACTaGCAGTTAAAGCCCTGGTCT +
Preference number: 3 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPKATVH*QLKPWS
Trigger: AGACCAGGGCTTTAACTGCAAGTGAACTGTGGCTTT...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp TGTGTGCAATGTGTCTGGAACACGTACACTAGAATTTaGGTAAACTGGGCAGTGTCTCACTCCTATGCTGGG +
Preference number: 3 (lower is better)
Translates to: CVQCVWNTYTRI*VNWAVSHSYAG
Trigger: CCCAGCATAGGAGTGAGACACTGCCCAGTTTACTCAAATTCTAGTGTACGTGTTCCAGACACATTGCACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp TGCTTGAAGACACCTTGTGTCACAGTCATCTCCTCCTaGCAACACCTTGTGTCACAATCATCTTCTCCTGAC +
Preference number: 3 (lower is better)
Translates to: CLKTPCVTVISS*QHLVSQSSSPD
Trigger: GTCAGGAGAAGATGATTGTGACACAAGGTGTTGTCAGGAGGAGATGACTGTGACACAAGGTGTCTTCAAGCA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp GGCAGAGTCTTAATTCAGCTAAGAAGCAAAGTCTCATaGCGAACACACACCTCAGTCACGGCACACACAACA +
Preference number: 3 (lower is better)
Translates to: GRVLIQLRSKVS*RTHTSVTAHTT
Trigger: TGTTGTGTGTGCCGTGACTGAGGTGTGTGTTCGTCATGAGACTTTGCTTCTTAGCTGAATTAAGACTCTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp AAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTaGGAAGCTGATTCCAGAAGCTGCAGCCTATTTCCT +
Preference number: 3 (lower is better)
Translates to: KATSKHNKGGKT*EADSRSCSLFP
Trigger: AGGAAATAGGCTGCAGCTTCTGGAATCAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp CACACACACACACACACACACACACACACACCATTATaGCGAGATGGGCTTTCAGGATTTCTAGCAGATTCT +
Preference number: 3 (lower is better)
Translates to: HTHTHTHTHTPL*RDGLSGFLADS
Trigger: AGAATCTGCTAGAAATCCTGAAAGCCCATCTCGGCATAATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp AGGATGGGTGAGGGCAAGGGCATCTTGCTCACATCCTaGTTAGAAAATACCATCCAATCCAAACAAGCAAAG +
Preference number: 3 (lower is better)
Translates to: RMGEGKGILLTS*LENTIQSKQAK
Trigger: CTTTGCTTGTTTGGATTGGATGGTATTTTCTAAGCAGGATGTGAGCAAGATGCCCTTGCCCTCACCCATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp AGACCCATCTGTACAGATCTGTACACCACCTGTCAATaGAGTCCAGTAACACAGGTGCCAAAGGTTACACAT +
Preference number: 3 (lower is better)
Translates to: RPICTDLYTTCQ*SPVTQVPKVTH
Trigger: ATGTGTAACCTTTGGCACCTGTGTTACTGGACTGCATTGACAGGTGGTGTACAGATCTGTACAGATGGGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GGATACCAGAGCTTTTGTCCCGAGTGTCAGAACCACTaGATTCTTTGTACTGAGGCCAGAATTCACTTGGAA +
Preference number: 3 (lower is better)
Translates to: GYQSFCPECQNH*ILCTEARIHLE
Trigger: TTCCAAGTGAATTCTGGCCTCAGTACAAAGAATCCAGTGGTTCTGACACTCGGGACAAAAGCTCTGGTATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp AAGGACAAAGCAGGATGCTGGCCAACCACCACTAAGTaGCACAGCCTTTATTTATCCTTTCTTTATCCCAAG +
Preference number: 3 (lower is better)
Translates to: KDKAGCWPTTTK*HSLYLSFLYPK
Trigger: CTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGCATCCTGCTTTGTCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp CTTGCTGAACACTCCACGTTGCTGGTCACTAGCTTCTaGGAAACAAAGAACAATGTCAAGTGTTTAGCACAC +
Preference number: 3 (lower is better)
Translates to: LAEHSTLLVTSF*ETKNNVKCLAH
Trigger: GTGTGCTAAACACTTGACATTGTTCTTTGTTTCTCAGAAGCTAGTGACCAGCAACGTGGAGTGTTCAGCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp CTGAGGTTTCTTATTACACAACCTGTTCCACGGAGCTaGACCACAAACTACTGCCTTTTAAAAAGTCCTCAC +
Preference number: 3 (lower is better)
Translates to: LRFLITQPVPRS*TTNYCLLKSPH
Trigger: GTGAGGACTTTTTAAAAGGCAGTAGTTTGTGGTGCAGCTCCGTGGAACAGGTTGTGTAATAAGAAACCTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp CACACACACACACACACACACACCATTATGCCGAGATaGGCTTTCAGGATTTCTAGCAGATTCTTCTTAAAC +
Preference number: 3 (lower is better)
Translates to: HTHTHTHTIMPR*AFRISSRFFLN
Trigger: GTTTAAGAAGAATCTGCTAGAAATCCTGAAAGCCCATCTCGGCATAATGGTGTGTGTGTGTGTGTGTGTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp ACCATCCAATCCAAACAAGCAAAGCTTCACACTCTCTaGAATCACAAACCACAAACGAAACAGCCAAGAAGG +
Preference number: 3 (lower is better)
Translates to: TIQSKQAKLHTL*NHKPQTKQPRR
Trigger: CCTTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTTGTTTGGATTGGATGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp TTTAATTTGCTTTGTAGTTGTGCTTATAACAGAACATaGAGACTTCCATCCACGCCTGTGGATGGTGGCGGT +
Preference number: 3 (lower is better)
Translates to: FNLLCSCAYNRT*RLPSTPVDGGG
Trigger: ACCGCCACCATCCACAGGCGTGGATGGAAGTCTTCATGTTCTGTTATAAGCACAACTACAAAGCAAATTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR GCA 72 bp CCCTCCCTGGAAACATTCAAATACAAGTACTGTGGCTaGCTGTCCCCATTCTACCTTGTAATAAATACTTAC +
Preference number: 3 (lower is better)
Translates to: PSLETFKYKYCG*LSPFYLVINTY
Trigger: GTAAGTATTTATTACAAGGTAGAATGGGGACAGGCAGCCACAGTACTTGTATTTGAATGTTTCCAGGGAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp GAAACAAATTCACAGGGAAAAAGAATTGATCAGGGATaGCACTGTGCTTATCAACAGCAACCAGGGCAGAAT +
Preference number: 3 (lower is better)
Translates to: ETNSQGKRIDQG*HCAYQQQPGQN
Trigger: ATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCCTGATCAATTCTTTTTCCCTGTGAATTTGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR-3UTR CAA 90 bp TCTTGGCAGCTTAGTGCTATGAACCTCCAGAGAGAAATAGTGCTTACACATAGATTATCCTGGATGTATTaGCTAAGGACACCACACACA +
Preference number: 3 (lower is better)
Translates to: SWQLSAMNLQREIVLTHRLSWMY*LRTPHT
Trigger: TGTGTGTGGTGTCCTTAGCAAATACATCCAGGATAA...TCTATGTGTAAGCACTATTTCTCTCTGGAGGTTCATAGCACTAAGCTGCCAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR TCA 72 bp CCTTTCTTTATCCCAAGAGAAGACCCTCAAGTTCTATaGTCAAATGCTCCAAGAGATCTGAAAACGAGCCTT +
Preference number: 3 (lower is better)
Translates to: PFFIPREDPQVL*SNAPRDLKTSL
Trigger: AAGGCTCGTTTTCAGATCTCTTGGAGCATTTGATCATAGAACTTGAGGGTCTTCTCTTGGGATAAAGAAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp CAGTTTGTACCAAAATACCTATGTAGTACTGTTGTTTaGTGTCGAAAGAGTTTAGATCCCATGAACTCCCCA +
Preference number: 3 (lower is better)
Translates to: QFVPKYLCSTVV*CRKSLDPMNSP
Trigger: TGGGGAGTTCATGGGATCTAAACTCTTTCGACACCAAACAACAGTACTACATAGGTATTTTGGTACAAACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CCA 72 bp ATTCTGACTAGTTGCCCTATGTTCGTTCCCTTGTGCTaGAACAATGTGGGCTATTTTCAAAACTTAAATCCA +
Preference number: 3 (lower is better)
Translates to: ILTSCPMFVPLC*NNVGYFQNLNP
Trigger: TGGATTTAAGTTTTGAAAATAGCCCACATTGTTCCAGCACAAGGGAACGAACATAGGGCAACTAGTCAGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGGATGGAAAAGGCAGCTaGCAGGGCCGGCTGGTGACG +
Preference number: 4 (lower is better)
Translates to: GMALCLSTATRAEWGRGEDGKGS*QGRLVT
Trigger: CGTCACCAGCCGGCCCTGCCAGCTGCCTTTTCCATC...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TGTCTCAACTGGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTCCCCACAAGGCCTTGCTGCCCGTCTTaGCGTGGGTGCTGCTGGCCG +
Preference number: 4 (lower is better)
Translates to: CLNWQDLLCCLLTPFPTRPCCPS*RGCCWP
Trigger: CGGCCAGCAGCACCCACGCCAAGACGGGCAGCAAGG...CCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp AAGGGAGCAGCCCCACCCTGCAGGCATGGTGGGGACTaGCTGAACACTCCACGTTGCTGGTCACTAGCTTCT +
Preference number: 4 (lower is better)
Translates to: KGAAPPCRHGGD*LNTPRCWSLAS
Trigger: AGAAGCTAGTGACCAGCAACGTGGAGTGTTCAGCAAGTCCCCACCATGCCTGCAGGGTGGGGCTGCTCCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGTGCTGTTGCTGCTGCTaGTGCTGTCCCCTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: GMALCLSTATRAEWGRGECCCCC*CCPLKN
Trigger: GTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAGCA...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp TGTCTCAACTGGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTCCCCACAAGGTGTTGGAAGGGGCTGTaGTCAGCCTGCCACGGCTGG +
Preference number: 4 (lower is better)
Translates to: CLNWQDLLCCLLTPFPTRCWKGL*SACHGW
Trigger: CCAGCCGTGGCAGGCTGAGCACAGCCCCTTCCAACA...CCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGGGTGGTGGCGTGGGCTaGCCCTGCACTCCCTGTGGC +
Preference number: 4 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLGGGVG*PCTPCG
Trigger: GCCACAGGGAGTGCAGGGCCAGCCCACGCCACCACC...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTGCCATACTCCGGGGGTaGCTGATACCTCAGGACGGC +
Preference number: 4 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECAILRG*LIPQDG
Trigger: GCCGTCCTGAGGTATCAGCCACCCCCGGAGTATGGC...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGGCAGAGTACCACCGATaGAGGAGGTCTGAGAGGACA +
Preference number: 4 (lower is better)
Translates to: GMALCLSTATRAEWGRGEAEYHR*RRSERT
Trigger: TGTCCTCTCAGACCTCCTCCATCGGTGGTACTCTGC...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATGGGCAGGCCTCAGGCTaGCAGAGTCCGTCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYGQASG*QSPSSQ
Trigger: CTGGGAAGACGGACTCTGCCAGCCTGAGGCCTGCCC...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp TGTCTCAACTGGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTCCCCACAAGGCCTGTGGCCTGGTGCTaGATGGCCAGCAGGTTCATG +
Preference number: 4 (lower is better)
Translates to: CLNWQDLLCCLLTPFPTRPVAWC*MASRFM
Trigger: CATGAACCTGCTGGCCATTCAGCACCAGGCCACAGG...CCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGCACCTCCTGTTGGCCTaGACCACTTCTTCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: GMALCLSTATRAEWGRGEHLLLA*TTSSSS
Trigger: AGAGGAAGAAGAAGTGGTGCAGGCCAACAGGAGGTG...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGAGGGCTGTGCTCAGCCTaGCACGGCTGGGGAGGGAAG +
Preference number: 4 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGGLCSA*HGWGGK
Trigger: CTTCCCTCCCCAGCCGTGGCAGGCTGAGCACAGCCC...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATTCCGGTCCAAGCTGCTaGTTGGGGGAGGCTGGTAGG +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYSGPSC*LGEAGR
Trigger: CCTACCAGCCTCCCCCAACCAGCAGCTTGGACCGGA...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATGGAGGGAAGCCATGCTaGGCCAGAAGAGCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYGGKPC*ARRAPC
Trigger: GCACGGAGCTCTTCTGGCCCAGCATGGCTTCCCTCC...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATGCTGCTGCTGTCCCCTaGAGAACTGGGACTGGGCCT +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHAAAVP*RTGTGP
Trigger: AGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGC...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATTACTCCGGGGGTGGCTaGTACCTCAGGACGGCCACT +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHYSGGG*YLRTAT
Trigger: AGTGGCCGTCCTGAGGTATCAGCCACCCCCGGAGTA...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp TGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCTGCTGCTGTTGCTGCTaGTGCTGCTGTCCCCTGAAG +
Preference number: 4 (lower is better)
Translates to: CDESTPVLVLQLLLQLPICCCCC*CCCPLK
Trigger: CTTCAGGGGACAGCAGCAGCAGCAGCAACAGCAGCA...GATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp TGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCGCCCATCGTATTCCCTaGTGGACAGCTGCCTGTTGG +
Preference number: 4 (lower is better)
Translates to: CDESTPVLVLQLLLQLPIAHRIP*WTAACW
Trigger: CCAACAGGCAGCTGTCCAGCAGGGAATACGATGGGC...GATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTCAGCAGAGGGGCAGATaGCTGTCCCTGGTGTTCCTT +
Preference number: 4 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECQQRGR*LSLVFL
Trigger: AAGGAACACCAGGGACAGGCATCTGCCCCTCTGCTG...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATTGCTGCTGTCCTTGCTaGCCGTCTTGGCGTGGGTGC +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHCCCPC*PSWRGC
Trigger: GCACCCACGCCAAGACGGGCAGCAAGGACAGCAGCA...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TGTCTCAACTGGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTCCCCACAAGGAAGAAAAGTTGGTGGTaGCGTGGGCTGGCCCTGCAC +
Preference number: 4 (lower is better)
Translates to: CLNWQDLLCCLLTPFPTRKKSWW*RGLALH
Trigger: GTGCAGGGCCAGCCCACGCCACCACCAACTTTTCTT...CCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATGTCCAAGCTGCTGGTTaGGGGAGGCTGGTAGGGGCT +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHVQAAG*GRLVGA
Trigger: AGCCCCTACCAGCCTCCCCCAACCAGCAGCTTGGAC...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGATGTCCCTCTCGGCTGTaGCAGCGGCAGCTGCGCTCA +
Preference number: 4 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGCPSRL*QRQLRS
Trigger: TGAGCGCAGCTGCCGCTGCCACAGCCGAGAGGGACA...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCTCAGCCTGCCACGGCTaGGGAGGGAAGCCATGCTGG +
Preference number: 4 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCSACHG*GGKPCW
Trigger: CCAGCATGGCTTCCCTCCCCAGCCGTGGCAGGCTGA...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp TGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCTGTTGCTGCTGCTGCTaGTGTCCCCTGAAGAACTGG +
Preference number: 4 (lower is better)
Translates to: CDESTPVLVLQLLLQLPICCCCC*CPLKNW
Trigger: CCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACA...GATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATTGGGCCTCCCCTCAGTaGGGGACTTCTGACTGGTAC +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHWASPQ*GTSDWY
Trigger: GTACCAGTCAGAAGTCCCGCACTGAGGGGAGGCCCA...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGTTCTCGCACGCTGACTaGAGCTGGGTCAGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLFSHAD*SWVRAC
Trigger: GCAGGCCCTGACCCAGCTGCAGTCAGCGTGCGAGAA...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCTGTGGCAGCGGCAGCTaGGCTCATGGCAAAGTGCCG +
Preference number: 4 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCCGSGS*AHGKVP
Trigger: CGGCACTTTGCCATGAGCGCAGCTGCCGCTGCCACA...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATGCCAGAAGAGCTCCGTaGTCTTGTCGGTCTGTGTGC +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYARRAP*SCRSVC
Trigger: GCACACAGACCGACAAGAGCACGGAGCTCTTCTGGC...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTCGCAGGCTGAGGTGCTaGGTAAGGTTTGACCATCTC +
Preference number: 4 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECRRLRC*VRFDHL
Trigger: GAGATGGTCAAACCTTACCCAGCACCTCAGCCTGCG...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCTGGACAGCTGCCTGTTaGCTGTCTCCAGTCGATCTC +
Preference number: 4 (lower is better)
Translates to: CDESTPVLVLQLLLQLPIWTAAC*LSPVDL
Trigger: GAGATCGACTGGAGACAGCCAACAGGCAGCTGTCCA...GATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGTCCTCTGGCCAGATGTaGGCCTCCAGGGAGCTCTCC +
Preference number: 4 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLSSGQM*ASRELS
Trigger: GGAGAGCTCCCTGGAGGCCCACATCTGGCCAGAGGA...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp CAGTGTCTCACTCCTATGCTGGGAGATAGCCTAAGTTaGGGGTGGCTCAGACATGGTCTCAGGGCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: QCLTPMLGDSLS*GWLRHGLRAGR
Trigger: TCTTCCAGCCCTGAGACCATGTCTGAGCCACCCCAAACTTAGGCTATCTCCCAGCATAGGAGTGAGACACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp CTCACTTCAAAGGGAATCCGAGGAGCAGGCCAGACCTaGGAGGCCATTGTGCTAGAGGAGTCAACAGCCATT +
Preference number: 4 (lower is better)
Translates to: LTSKGIRGAGQT*EAIVLEESTAI
Trigger: AATGGCTGTTGACTCCTCTAGCACAATGGCCTCCAAGGTCTGGCCTGCTCCTCGGATTCCCTTTGAAGTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATCCCATTCCTCTCCAGTaGCAGCTGCATGATCCTCTC +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYPIPLQ*QLHDPL
Trigger: GAGAGGATCATGCAGCTGTCACTGGAGAGGAATGGG...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGACCGATGGAGGAGGTCTaGGAGGACATGGGGCTATGC +
Preference number: 4 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGPMEEV*EDMGLC
Trigger: GCATAGCCCCATGTCCTCTCAGACCTCCTCCATCGG...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp TGTCTCAACTGGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTCCCCACAAGGTCCAGGATCTCGATGTaGCTCCGATGGTCCTCACTT +
Preference number: 4 (lower is better)
Translates to: CLNWQDLLCCLLTPFPTRSRISM*LRWSSL
Trigger: AAGTGAGGACCATCGGAGGCACATCGAGATCCTGGA...CCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATTCTTGTCGGTCTGTGTaGTGCTGTCCTTGCTGCCCG +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHSCRSV*CCPCCP
Trigger: CGGGCAGCAAGGACAGCAGCACACAGACCGACAAGA...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATCCAGGAGAGTTCTCCTaGTTCTCCACGGCTCCTTTG +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYPGEFS*FSTAPL
Trigger: CAAAGGAGCCGTGGAGAAGCAGGAGAACTCTCCTGG...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGCCGTGGAAGAAAAGTTaGTGGTGGCGTGGGCTGGCC +
Preference number: 4 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLPWKKS*WWRGLA
Trigger: GGCCAGCCCACGCCACCACCAACTTTTCTTCCACGG...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATAGGCTGAGCTGGGGATaGCTCTCCTCCAGCTTTGAA +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYRLSWG*LSSSFE
Trigger: TTCAAAGCTGGAGGAGAGCCATCCCCAGCTCAGCCT...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGGAAGGGGTATTCAGGTaGAGGGCCACGAGGGTCCAG +
Preference number: 4 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLEGVFR*RATRVQ
Trigger: CTGGACCCTCGTGGCCCTCCACCTGAATACCCCTTC...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp ATGAGAGCTTGTGGCAGCAGCCTCAGGTCCTGCCTCTaGTTCATAGGGACTCATTTCCATGACTTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: MRACGSSLRSCL*FIGTHFHDFAA
Trigger: GGCAGCAAAGTCATGGAAATGAGTCCCTATGAACAAGAGGCAGGACCTGAGGCTGCTGCCACAAGCTCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp CACCTTGTGTCACAATCATCTTCTCCTGACAACACCTaGTGTCATGGCCACCTCCTCCGTCTCCCAGATCAG +
Preference number: 4 (lower is better)
Translates to: HLVSQSSSPDNT*CHGHLLRLPDQ
Trigger: CTGATCTGGGAGACGGAGGAGGTGGCCATGACACAAGGTGTTGTCAGGAGAAGATGATTGTGACACAAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp GTGTGTGTGTCTGAGTCAGAGGACAACTTGCTGCAGTaGGCTCTCTCCTACTATGGGGTTCCTGGGGATCAA +
Preference number: 4 (lower is better)
Translates to: VCVSESEDNLLQ*ALSYYGVPGDQ
Trigger: TTGATCCCCAGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCATCCTCGTTGTTCTGCTaGGGCTGTGTGGACCGGACC +
Preference number: 4 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPSSLFC*GCVDRT
Trigger: GGTCCGGTCCACACAGCCTCAGCAGAACAACGAGGA...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTTCATTGGCTTGGTCTTaGAGGGGTATTCAGGTGGAG +
Preference number: 4 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECSLAWS*RGIQVE
Trigger: CTCCACCTGAATACCCCTTCAAGACCAAGCCAATGA...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACTCGCTTCTCGCACGCTaGCTGCAGCTGGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHSLLAR*LQLGQG
Trigger: GCCCTGACCCAGCTGCAGTCAGCGTGCGAGAAGCGA...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATGGGTCTTCTAGAATCTaGACAGGACTGCTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHGSSRI*TGLLGL
Trigger: CAGCCCCAGCAGTCCTGTGCAGATTCTAGAAGACCC...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGAGAGCTGGGGAGGTGTTaGTTAGCCCCATTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGELGRC*LAPFLS
Trigger: GGAGAGGAATGGGGCTAAGCAACACCTCCCCAGCTC...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTAGGATCTCTACCATTTaGTGGGCTCGCTCCACAATC +
Preference number: 4 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECRISTI*WARSTI
Trigger: GATTGTGGAGCGAGCCCAGCAAATGGTAGAGATCCT...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGATCCCTGCTGGACAGCTaGCTGTTGGCTGTCTCCAGT +
Preference number: 4 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGSLLDS*LLAVSS
Trigger: ACTGGAGACAGCCAACAGGCAGCTGTCCAGCAGGGA...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATCCTGTGCCATGTTTCTaGTGTGTCCTCAGAGCGTCT +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYPVPCF*CVLRAS
Trigger: AGACGCTCTGAGGACACAGCAGAAACATGGCACAGG...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCGCGCTCATGGCAAAGTaGCGGATGGTGCTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCALMAK*RMVLSS
Trigger: GGAAGAGAGCACCATCCGGCACTTTGCCATGAGCGC...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp TGTCTCAACTGGCAAGACCTCTTATGCTGCCTTCTCACTCCCTTCCCCACAAGGTCCTTACGGGATCGCTaGTGCAGGACCTTTATCATG +
Preference number: 4 (lower is better)
Translates to: CLNWQDLLCCLLTPFPTRSLRDR*CRTFIM
Trigger: CATGATAAAGGTCCTGCAGCAGCGATCCCGTAAGGA...CCTTGTGGGGAAGGGAGTGAGAAGGCAGCATAAGAGGTCTTGCCAGTTGAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGTCTGCACAGGACTGCTaGGGCTGTAGCAGATGGGAG +
Preference number: 4 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLSAQDC*GCSRWE
Trigger: CTCCCATCTGCTACAGCCCCAGCAGTCCTGTGCAGA...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTAAGTTGGTGGTGGCGTaGGCTGGCCCTGCACTCCCT +
Preference number: 4 (lower is better)
Translates to: FLKEGVSSPGEHIETNPAKLVVA*AGPALP
Trigger: AGGGAGTGCAGGGCCAGCCCACGCCACCACCAACTT...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGACTGGGACTGGGCCTTaGCTTCCTCATACGTGGGGA +
Preference number: 4 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLTGTGP*LPHTWG
Trigger: TCCCCACGTATGAGGAAGCCAAGGCCCAGTCCCAGT...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATCTGAAGAACTGGGACTaGGCCTTGGCTTCCTCATAC +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYLKNWD*ALASSY
Trigger: GTATGAGGAAGCCAAGGCCCAGTCCCAGTTCTTCAG...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp AAGCAAAGCTTCACACTCTCTGAAATCACAAACCACAAACGAAACAGCCAAGAATGGCCCGGTTCACTGTaGGCCTCCCCTCAGTGCGGG +
Preference number: 4 (lower is better)
Translates to: KQSFTLSEITNHKRNSQEWPGSL*ASPQCG
Trigger: CCCGCACTGAGGGGAGGCCCACAGTGAACCGGGCCA...TTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACGCGCCTGTCCACTGTTaGCCCGGTTCACTGTGGGCC +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHAPVHC*PGSLWA
Trigger: GGCCCACAGTGAACCGGGCCAACAGTGGACAGGCGC...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCAGGTCTGAGAGGACATaGGGCTATGCTGCTGCACCG +
Preference number: 4 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCRSERT*GYAAAP
Trigger: CGGTGCAGCAGCATAGCCCCATGTCCTCTCAGACCT...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATTTCTGGGAGACTGACTaGAGGGCCTGTGCCATGTTT +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYFWETD*RACAMF
Trigger: AAACATGGCACAGGCCCTCCAGTCAGTCTCCCAGAA...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGAGAGAATGTGTCCCAGTaGCCGCAGCGATGGATGGGA +
Preference number: 4 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGENVSQ*PQRWMG
Trigger: TCCCATCCATCGCTGCGGCCACTGGGACACATTCTC...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATTGGCTTCCTCATACGTaGGGAGCTCCTCGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHWLPHT*GAPRCS
Trigger: AGAACAACGAGGAGCTCCCCACGTATGAGGAAGCCA...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATATCTCTACCATTTGCTaGGCTCGCTCCACAATCGCA +
Preference number: 4 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYISTIC*ARSTIA
Trigger: TGCGATTGTGGAGCGAGCCCAGCAAATGGTAGAGAT...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCATCGATGTGCCTCCGATaGTCCTCACTTGCCGTACGC +
Preference number: 4 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPSMCLR*SSLAVR
Trigger: GCGTACGGCAAGTGAGGACCATCGGAGGCACATCGA...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATGCATTGCTCAAAGCCTaGTCCAGGATCTCGATGTGC +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHALLKA*SRISMC
Trigger: GCACATCGAGATCCTGGACCAGGCTTTGAGCAATGC...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATCCTGACACCTCCTGTTaGCCTGCACCACTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHPDTSC*PAPLLL
Trigger: AAGAAGAAGTGGTGCAGGCCAACAGGAGGTGTCAGG...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCTTCTCTTCTGTCAGCTaGCTGCTGGTAAGAGAAGTC +
Preference number: 4 (lower is better)
Translates to: CDESTPVLVLQLLLQLPIFSSVS*LLVREV
Trigger: GACTTCTCTTACCAGCAGCCAGCTGACAGAAGAGAA...GATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATCATCATCTCGCCATCTaGGAACTCAGGCTTGTGCAG +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHHHLAI*ELRLVQ
Trigger: CTGCACAAGCCTGAGTTCCCAGATGGCGAGATGATG...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp CATTGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTaGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: HCDESTPVLVLQ*LLQLPIWSSSF
Trigger: GAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp CCAGGAGGGAGAACCTGGCCTCGTTTCTCTGGTGCTTaGAGGACCATTCAACAGGCACTTTTTCTAGTGCTT +
Preference number: 4 (lower is better)
Translates to: PGGRTWPRFSGA*RTIQQALFLVL
Trigger: AAGCACTAGAAAAAGTGCCTGTTGAATGGTCCTCAAAGCACCAGAGAAACGAGGCCAGGTTCTCCCTCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp TGTGTGTGTGTGTGTGTGTCTGAGTCAGAGGACAACTaGCTGCAGTTGGCTCTCTCCTACTATGGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: CVCVCVSESEDN*LQLALSYYGVP
Trigger: AGGAACCCCATAGTAGGAGAGAGCCAACTGCAGCAAGTTGTCCTCTGACTCAGACACACACACACACACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp TGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCCTCGGAGATCTCTGTTaGAGTCATGAAGTCTCCTTA +
Preference number: 4 (lower is better)
Translates to: CDESTPVLVLQLLLQLPILGDLC*SHEVSL
Trigger: TAAGGAGACTTCATGACTTCAACAGAGATCTCCGAG...GATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACTGTGCAGCAAGTTGCTaGCTCGGCCTCTGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHCAASC*LGLCAP
Trigger: CGGAGCACAGAGGCCGAGTCAGCAACTTGCTGCACA...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp AAGCAAAGCTTCACACTCTCTGAAATCACAAACCACAAACGAAACAGCCAAGAAGTGTGCTGCTGTCCTTaGTGCCCGTCTTGGCGTGGG +
Preference number: 4 (lower is better)
Translates to: KQSFTLSEITNHKRNSQEVCCCP*CPSWRG
Trigger: CCCACGCCAAGACGGGCAGCAAGGACAGCAGCACAC...TTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAGGTTTGACCATCTCATaGAGTACCCCAGGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPGLTIS*STPGCW
Trigger: CCAGCACCCTGGGGTACTCCATGAGATGGTCAAACC...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGAGGAGCATTACATTCTaGGAGACTGACTGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLRSITF*ETDWRA
Trigger: GGCCCTCCAGTCAGTCTCCCAGAATGTAATGCTCCT...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATGTGGATCTTCTTGAGTaGGGGTTTCCGTGGAAGAAA +
Preference number: 4 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHVDLLE*GFPWKK
Trigger: TTTCTTCCACGGAAACCCTCACTCAAGAAGATCCAC...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp TCTTGGCAGCTTAGTGCTATGAACCTCCAGAGAGAAATAGTGCTTACACATAGAGTGTACTCCATGTCCTaGCACCTCCTGTTGGCCTGC +
Preference number: 4 (lower is better)
Translates to: SWQLSAMNLQREIVLTHRVYSMS*HLLLAC
Trigger: GCAGGCCAACAGGAGGTGTCAGGACATGGAGTACAC...TCTATGTGTAAGCACTATTTCTCTCTGGAGGTTCATAGCACTAAGCTGCCAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACTCCGATGCCTTCCCATaGCCAGGAGAGTTCTCCTGC +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHSDAFP*PGEFSC
Trigger: GCAGGAGAACTCTCCTGGTCATGGGAAGGCATCGGA...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp AGAAGACACCATGTGTTTAAACAACACAACCTCCCACTCAGGATGGCTCTCTGCCAAAGTGCCGGATGGTaGTCTCTTCCAGGTACTTCT +
Preference number: 4 (lower is better)
Translates to: RRHHVFKQHNLPLRMALCQSAGW*SLPGTS
Trigger: AGAAGTACCTGGAAGAGAGCACCATCCGGCACTTTG...GCAGAGAGCCATCCTGAGTGGGAGGTTGTGTTGTTTAAACACATGGTGTCTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCATGGCCTGGTGCTGAATaGCCAGCAGGTTCATGTTCT +
Preference number: 4 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPWPGAE*PAGSCS
Trigger: AGAACATGAACCTGCTGGCCATTCAGCACCAGGCCA...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACTGTCCCCTGAAGAACTaGGACTGGGCCTTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHCPLKN*DWALAS
Trigger: GGAAGCCAAGGCCCAGTCCCAGTTCTTCAGGGGACA...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGACTGGTAAGAGAAGTCTaGCGAGAATGTGTCCCAGTG +
Preference number: 4 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGLVREV*RECVPV
Trigger: CACTGGGACACATTCTCGCCAGACTTCTCTTACCAG...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp TCTTGGCAGCTTAGTGCTATGAACCTCCAGAGAGAAATAGTGCTTACACATAGATACATTCTGGGAGACTaGCTGGAGGGCCTGTGCCAT +
Preference number: 4 (lower is better)
Translates to: SWQLSAMNLQREIVLTHRYILGD*LEGLCH
Trigger: ATGGCACAGGCCCTCCAGTCAGTCTCCCAGAATGTA...TCTATGTGTAAGCACTATTTCTCTCTGGAGGTTCATAGCACTAAGCTGCCAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAAAGGGCCTCATCCTTATaGGCCTGTCCACTGTTGGCC +
Preference number: 4 (lower is better)
Translates to: LSATAFIYPFFIPREDPQRASSL*ACPLLA
Trigger: GGCCAACAGTGGACAGGCGCATAAGGATGAGGCCCT...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACGACCGGACATGGCCCTaGTTTAGTTCTTTCAGGGCC +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHDRTWP*FSSFRA
Trigger: GGCCCTGAAAGAACTAAAGCAGGGCCATGTCCGGTC...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCACACGTAATGGCTCTCTaGAGCTTTGTCTTCATGCCC +
Preference number: 4 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPHVMAL*SFVFMP
Trigger: GGGCATGAAGACAAAGCTGCAGAGAGCCATTACGTG...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp AAGCAAAGCTTCACACTCTCTGAAATCACAAACCACAAACGAAACAGCCAAGAACCGATGGTCCTCACTTaGCGTACGCACTGCTGCCAA +
Preference number: 4 (lower is better)
Translates to: KQSFTLSEITNHKRNSQEPMVLT*RTHCCQ
Trigger: TTGGCAGCAGTGCGTACGGCAAGTGAGGACCATCGG...TTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCATTGATCACTCTAGCCTaGGCATTGCTCAAAGCCTGG +
Preference number: 4 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPLITLA*ALLKAW
Trigger: CCAGGCTTTGAGCAATGCGCAGGCTAGAGTGATCAA...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp AAGCAAAGCTTCACACTCTCTGAAATCACAAACCACAAACGAAACAGCCAAGAAGCCTCTGTGCTCCGATaGCTTCCCATGACCAGGAGA +
Preference number: 4 (lower is better)
Translates to: KQSFTLSEITNHKRNSQEASVLR*LPMTRR
Trigger: TCTCCTGGTCATGGGAAGGCATCGGAGCACAGAGGC...TTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp AAGCAAAGCTTCACACTCTCTGAAATCACAAACCACAAACGAAACAGCCAAGAATGGAAGAAAAGTTGGTaGTGGCGTGGGCTGGCCCTG +
Preference number: 4 (lower is better)
Translates to: KQSFTLSEITNHKRNSQEWKKSW*WRGLAL
Trigger: CAGGGCCAGCCCACGCCACCACCAACTTTTCTTCCA...TTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAATCTGCTGAGGCTGTGTaGACCGGACCTGCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: LSATAFIYPFFIPREDPQSAEAV*TGPASP
Trigger: TGGAGAAGCAGGTCCGGTCCACACAGCCTCAGCAGA...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp GCTGGCCAACCACCACTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCATCTCGCCTTCGAGCTTaGTTCTCATTGCCTTGTCCA +
Preference number: 4 (lower is better)
Translates to: AGQPPLSATAFIYPFFIPSRLRA*FSLPCP
Trigger: TGGACAAGGCAATGAGAACCAAGCTCGAAGGCGAGA...TGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAGTGGTGGTTGGCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTTGGCAGCTTAGTGCTATGAACCTCCAGAGAGAAATAGTGCTTACACATAGACTGCCATTCCTCGAGTaGTTGCTGATGGTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: SWQLSAMNLQREIVLTHRLPFLE*LLMVVS
Trigger: GGACACCACCATCAGCAACCACTCGAGGAATGGCAG...TCTATGTGTAAGCACTATTTCTCTCTGGAGGTTCATAGCACTAAGCTGCCAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACCACTTCTTCTTCCTCTaGCCAGATGTGGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHHFFFL*PDVGLQ
Trigger: CTGGAGGCCCACATCTGGCCAGAGGAAGAAGAAGTG...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp TCTTGGCAGCTTAGTGCTATGAACCTCCAGAGAGAAATAGTGCTTACACATAGATGTGTGGACCGGACCTaGTTCTCCATCACCGTATTG +
Preference number: 4 (lower is better)
Translates to: SWQLSAMNLQREIVLTHRCVDRT*FSITVL
Trigger: CAATACGGTGATGGAGAAGCAGGTCCGGTCCACACA...TCTATGTGTAAGCACTATTTCTCTCTGGAGGTTCATAGCACTAAGCTGCCAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAAGAGGACATGGGGCTATaGTGCTGCACCGTAGATGGA +
Preference number: 4 (lower is better)
Translates to: LSATAFIYPFFIPREDPQEDMGL*CCTVDG
Trigger: TCCATCTACGGTGCAGCAGCATAGCCCCATGTCCTC...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACCCTTTGGCAGCTGGATaGTTTAGGATGGGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHPLAAG*FRMGLL
Trigger: CAACAGCCCCATCCTAAAGCATCCAGCTGCCAAAGG...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp CTCAAAGAAATCAGGATGGGTGAGGGCAAGGGCATCTaGCTCACATCCTGCTTAGAAAATACCATCCAATCC +
Preference number: 4 (lower is better)
Translates to: LKEIRMGEGKGI*LTSCLENTIQS
Trigger: GGATTGGATGGTATTTTCTAAGCAGGATGTGAGCAAGATGCCCTTGCCCTCACCCATCCTGATTTCTTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACGCTCTCCTCCAGCTTTaGAGCTCTTTCCATTTCCAG +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHALLQL*SSFHFQ
Trigger: CTGGAAATGGAAAGAGCTTCAAAGCTGGAGGAGAGC...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTTGGCAGCTTAGTGCTATGAACCTCCAGAGAGAAATAGTGCTTACACATAGAGTTCATGTTCTCAGTTaGGGTGCCATAGCGCAGTTG +
Preference number: 4 (lower is better)
Translates to: SWQLSAMNLQREIVLTHRVHVLS*GAIAQL
Trigger: CAACTGCGCTATGGCACCCCAACTGAGAACATGAAC...TCTATGTGTAAGCACTATTTCTCTCTGGAGGTTCATAGCACTAAGCTGCCAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp AAGCAAAGCTTCACACTCTCTGAAATCACAAACCACAAACGAAACAGCCAAGAATGCGGGACTTCTGACTaGTACCTCCGGCCATGTAAT +
Preference number: 4 (lower is better)
Translates to: KQSFTLSEITNHKRNSQECGTSD*YLRPCN
Trigger: ATTACATGGCCGGAGGTACCAGTCAGAAGTCCCGCA...TTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAAACTTGCCGTACGCACTaGTGCCAACTCCATTTCCAA +
Preference number: 4 (lower is better)
Translates to: LSATAFIYPFFIPREDPQTCRTH*CQLHFQ
Trigger: TTGGAAATGGAGTTGGCAGCAGTGCGTACGGCAAGT...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACGACTGGGGATTTCATTaGCTTGGTCTTGAAGGGGTA +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHDWGFH*LGLEGV
Trigger: TACCCCTTCAAGACCAAGCCAATGAAATCCCCAGTC...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTTTGGTTCTTGCTGACTaGGGATTTCATTGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: FLKEGVSSPGEHIETNPALVLAD*GFHWLG
Trigger: ACCAAGCCAATGAAATCCCCAGTCAGCAAGAACCAA...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGTCTTTTTCAAACTTGTaGAGCTTGTCAGCGTTGTCA +
Preference number: 4 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLSFSNL*SLSALS
Trigger: TGACAACGCTGACAAGCTCCACAAGTTTGAAAAAGA...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CCA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTCTGATAGACCATTTGTaGATCTTCTTGAGTGAGGGT +
Preference number: 4 (lower is better)
Translates to: FLKEGVSSPGEHIETNPALIDHL*IFLSEG
Trigger: ACCCTCACTCAAGAAGATCCACAAATGGTCTATCAG...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR TCA 90 bp AAGCAAAGCTTCACACTCTCTGAAATCACAAACCACAAACGAAACAGCCAAGAAATTTGTGGATCTTCTTaGGTGAGGGTTTCCGTGGAA +
Preference number: 4 (lower is better)
Translates to: KQSFTLSEITNHKRNSQEICGSS*VRVSVE
Trigger: TTCCACGGAAACCCTCACTCAAGAAGATCCACAAAT...TTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACCACTGTCAAAGTAGATaGTTCATGCCTCCCAGAATA +
Preference number: 4 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHHCQSR*FMPPRI
Trigger: TATTCTGGGAGGCATGAAGCATCTACTTTGACAGTG...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp CCAATTCCCCATCTCTATACCCTTCCCTTTCTGGGTTaGTCCCCAACATTAATAGGAGACAATATGTTCTTA +
Preference number: 4 (lower is better)
Translates to: PIPHLYTLPFLG*SPTLIGDNMFL
Trigger: TAAGAACATATTGTCTCCTATTAATGTTGGGGACAAACCCAGAAAGGGAAGGGTATAGAGATGGGGAATTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR GCA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAAGCCTCCGAAATACTCTaGAGCTCTTTTTCAAACTTG +
Preference number: 4 (lower is better)
Translates to: LSATAFIYPFFIPREDPQASEIL*SSFSNL
Trigger: CAAGTTTGAAAAAGAGCTGCAGAGTATTTCGGAGGC...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
3UTR CAA 72 bp GACCATTCAACAGGCACTTTTTCTAGTGCTTTCAGTTaGTACCAAAATACCTATGTAGTACTGTTGTTTGGT +
Preference number: 4 (lower is better)
Translates to: DHSTGTFSSAFS*YQNTYVVLLFG
Trigger: ACCAAACAACAGTACTACATAGGTATTTTGGTACAAACTGAAAGCACTAGAAAAAGTGCCTGTTGAATGGTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS GCA 90 bp GGCGTGGGTGCTGCTGGCCGATGTGGTAGAGGCCGGAAGGGACAATaGAGAGGCAGGTGTGGTCGGCAGCAGAGGGGCAGATGCCTGTCC +
Preference number: 5 (lower is better)
Translates to: GVGAAGRCGRGRKGQ*RGRCGRQQRGRCLS
Trigger: GGACAGGCATCTGCCCCTCTGCTGCCGACCACACCTGCCTCTGCATTGTCCCTTCCGGCCTCTACCACATCGGCCAGCAGCACCCACGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp CAGTGGCCGCAGCGATGGATGGGACAGAGCGGGCAGGCCTCAGGCTaGCAGAGTCCGTCTTCCCAGCATCCTTACGGGATCGCTGCTGCA +
Preference number: 5 (lower is better)
Translates to: QWPQRWMGQSGQASG*QSPSSQHPYGIAAA
Trigger: TGCAGCAGCGATCCCGTAAGGATGCTGGGAAGACGGACTCTGCCAGCCTGAGGCCTGCCCGCTCTGTCCCATCCATCGCTGCGGCCACTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp GGGCCTCATCCTTATGCGCCTGTCCACTGTTGGCCCGGTTCACTGTaGGCCTCCCCTCAGTGCGGGACTTCTGACTGGTACCTCCGGCCA +
Preference number: 5 (lower is better)
Translates to: GPHPYAPVHCWPGSL*ASPQCGTSDWYLRP
Trigger: TGGCCGGAGGTACCAGTCAGAAGTCCCGCACTGAGGGGAGGCCCACAGTGAACCGGGCCAACAGTGGACAGGCGCATAAGGATGAGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp GGAGGAGGTCTGAGAGGACATGGGGCTATGCTGCTGCACCGTAGATaGAAAAGGCAGCTGGCAGGGCCGGCTGGTGACGCCATACTCCGG +
Preference number: 5 (lower is better)
Translates to: GGGLRGHGAMLLHRR*KRQLAGPAGDAILR
Trigger: CCGGAGTATGGCGTCACCAGCCGGCCCTGCCAGCTGCCTTTTCCATCTACGGTGCAGCAGCATAGCCCCATGTCCTCTCAGACCTCCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp GCTGGTTGGGGGAGGCTGGTAGGGGCTGTGAAGCCGCCAGGCTTATaGGAAGTGGAAGAGGCAGGGAGACGGAGTGCAGAGTACCACCGA +
Preference number: 5 (lower is better)
Translates to: AGWGRLVGAVKPPGL*EVEEAGRRSAEYHR
Trigger: TCGGTGGTACTCTGCACTCCGTCTCCCTGCCTCTTCCACTTCCCATAAGCCTGGCGGCTTCACAGCCCCTACCAGCCTCCCCCAACCAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp GGGCTCGCTCCACAATCGCAAAGGCATCCGGTCCAAGCTGCTGGTTaGGGGAGGCTGGTAGGGGCTGTGAAGCCGCCAGGCTTATGGGAA +
Preference number: 5 (lower is better)
Translates to: GLAPQSQRHPVQAAG*GRLVGAVKPPGLWE
Trigger: TTCCCATAAGCCTGGCGGCTTCACAGCCCCTACCAGCCTCCCCCAACCAGCAGCTTGGACCGGATGCCTTTGCGATTGTGGAGCGAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp TGCTGGGCTCGCTCCACAATCGCAAAGGCATCCGGTCCAAGCTGCTaGTTGGGGGAGGCTGGTAGGGGCTGTGAAGCCGCCAGGCTTATG +
Preference number: 5 (lower is better)
Translates to: CWARSTIAKASGPSC*LGEAGRGCEAARLM
Trigger: CATAAGCCTGGCGGCTTCACAGCCCCTACCAGCCTCCCCCAACCAGCAGCTTGGACCGGATGCCTTTGCGATTGTGGAGCGAGCCCAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp AAGAGAAGTCTGGCGAGAATGTGTCCCAGTGGCCGCAGCGATGGATaGGACAGAGCGGGCAGGCCTCAGGCTGGCAGAGTCCGTCTTCCC +
Preference number: 5 (lower is better)
Translates to: KRSLARMCPSGRSDG*DRAGRPQAGRVRLP
Trigger: GGGAAGACGGACTCTGCCAGCCTGAGGCCTGCCCGCTCTGTCCCATCCATCGCTGCGGCCACTGGGACACATTCTCGCCAGACTTCTCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp GCGCCTGTCCACTGTTGGCCCGGTTCACTGTGGGCCTCCCCTCAGTaGGGGACTTCTGACTGGTACCTCCGGCCATGTAATAAGTGTGGC +
Preference number: 5 (lower is better)
Translates to: APVHCWPGSLWASPQ*GTSDWYLRPCNKCG
Trigger: GCCACACTTATTACATGGCCGGAGGTACCAGTCAGAAGTCCCGCACTGAGGGGAGGCCCACAGTGAACCGGGCCAACAGTGGACAGGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp TGGTGGCGTGGGCTGGCCCTGCACTCCCTGTGGCCTGGTGCTGAATaGCCAGCAGGTTCATGTTCTCAGTTGGGGTGCCATAGCGCAGTT +
Preference number: 5 (lower is better)
Translates to: WWRGLALHSLWPGAE*PAGSCSQLGCHSAV
Trigger: AACTGCGCTATGGCACCCCAACTGAGAACATGAACCTGCTGGCCATTCAGCACCAGGCCACAGGGAGTGCAGGGCCAGCCCACGCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013220.8
ENSMUST00000162901.8
ENSMUST00000223132.2
CDS CCA 90 bp TCTCCTGCTTCTCCACGGCTCCTTTGGCAGCTGGATGCTTTAGGATaGGGCTGTTGGAAGGGGCTGTGCTCAGCCTGCCACGGCTGGGGA +
Preference number: 5 (lower is better)
Translates to: SPASPRLLWQLDALG*GCWKGLCSACHGWG
Trigger: TCCCCAGCCGTGGCAGGCTGAGCACAGCCCCTTCCAACAGCCCCATCCTAAAGCATCCAGCTGCCAAAGGAGCCGTGGAGAAGCAGGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 90 bp GCTGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGTCCCCTaGAGAACTGGGACTGGGCCTTGGCTTCCTCATACGTGGGGAGCT +
Preference number: 5 (lower is better)
Translates to: AAVAAAAVAAAAAVP*RTGTGPWLPHTWGA
Trigger: AGCTCCCCACGTATGAGGAAGCCAAGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp GTGGTTGCTGATGGTGGTGTCCCTCTCGGCTGTGGCAGCGGCAGCTaGGCTCATGGCAAAGTGCCGGATGGTGCTCTCTTCCAGGTACTT +
Preference number: 5 (lower is better)
Translates to: VVADGGVPLGCGSGS*AHGKVPDGALFQVL
Trigger: AAGTACCTGGAAGAGAGCACCATCCGGCACTTTGCCATGAGCGCAGCTGCCGCTGCCACAGCCGAGAGGGACACCACCATCAGCAACCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp TGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGTCCCCTGAAGAACTaGGACTGGGCCTTGGCTTCCTCATACGTGGGGAGCTCCTCGTTG +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCPLKN*DWALASSYVGSSSL
Trigger: CAACGAGGAGCTCCCCACGTATGAGGAAGCCAAGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp GAGGGTTTCCGTGGAAGAAAAGTTGGTGGTGGCGTGGGCTGGCCCTaGACTCCCTGTGGCCTGGTGCTGAATGGCCAGCAGGTTCATGTT +
Preference number: 5 (lower is better)
Translates to: EGFRGRKVGGGVGWP*TPCGLVLNGQQVHV
Trigger: AACATGAACCTGCTGGCCATTCAGCACCAGGCCACAGGGAGTGCAGGGCCAGCCCACGCCACCACCAACTTTTCTTCCACGGAAACCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013220.8
ENSMUST00000162901.8
ENSMUST00000223132.2
CDS GCA 90 bp GACCGGACATGGCCCTGCTTTAGTTCTTTCAGGGCCTCATCCTTATaGGCCTGTCCACTGTTGGCCCGGTTCACTGTGGGCCTCCCCTCA +
Preference number: 5 (lower is better)
Translates to: DRTWPCFSSFRASSL*ACPLLARFTVGLPS
Trigger: TGAGGGGAGGCCCACAGTGAACCGGGCCAACAGTGGACAGGCGCATAAGGATGAGGCCCTGAAAGAACTAAAGCAGGGCCATGTCCGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp CTCAGGCTTGTGCAGCAAGTTGCTGACTCGGCCTCTGTGCTCCGATaGCTTCCCATGACCAGGAGAGTTCTCCTGCTTCTCCACGGCTCC +
Preference number: 5 (lower is better)
Translates to: LRLVQQVADSASVLR*LPMTRRVLLLLHGS
Trigger: GGAGCCGTGGAGAAGCAGGAGAACTCTCCTGGTCATGGGAAGGCATCGGAGCACAGAGGCCGAGTCAGCAACTTGCTGCACAAGCCTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp TTGAGTGAGGGTTTCCGTGGAAGAAAAGTTGGTGGTGGCGTGGGCTaGCCCTGCACTCCCTGTGGCCTGGTGCTGAATGGCCAGCAGGTT +
Preference number: 5 (lower is better)
Translates to: LSEGFRGRKVGGGVG*PCTPCGLVLNGQQV
Trigger: AACCTGCTGGCCATTCAGCACCAGGCCACAGGGAGTGCAGGGCCAGCCCACGCCACCACCAACTTTTCTTCCACGGAAACCCTCACTCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013220.8
ENSMUST00000162901.8
ENSMUST00000223132.2
CDS CCA 90 bp TGCTGCTGTTGCTGCTGCTGCTGCTGTCCCCTGAAGAACTGGGACTaGGCCTTGGCTTCCTCATACGTGGGGAGCTCCTCGTTGTTCTGC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCPLKNWD*ALASSYVGSSSLFC
Trigger: GCAGAACAACGAGGAGCTCCCCACGTATGAGGAAGCCAAGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp GCAGAGGCAGGTGTGGTCGGCAGCAGAGGGGCAGATGCCTGTCCCTaGTGTTCCTTTCCCAGCAGGAATCCTATACTCCCTTTCCAGGTC +
Preference number: 5 (lower is better)
Translates to: AEAGVVGSRGADACP*CSFPSRNPILPFQV
Trigger: GACCTGGAAAGGGAGTATAGGATTCCTGCTGGGAAAGGAACACCAGGGACAGGCATCTGCCCCTCTGCTGCCGACCACACCTGCCTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGTCCGTGGAAGAAAAGTaGGTGGTGGCGTGGGCTGGC +
Preference number: 5 (lower is better)
Translates to: GMALCLSTATRAEWGRGESVEEK*VVAWAG
Trigger: GCCAGCCCACGCCACCACCAACTTTTCTTCCACGGA...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTTCCTTGCTGCCCGTCTaGGCGTGGGTGCTGCTGGCC +
Preference number: 5 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECSLLPV*AWVLLA
Trigger: GGCCAGCAGCACCCACGCCAAGACGGGCAGCAAGGA...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS TCA 90 bp AGAGGCAGGGAGACGGAGTGCAGAGTACCACCGATGGAGGAGGTCTaGGAGGACATGGGGCTATGCTGCTGCACCGTAGATGGAAAAGGC +
Preference number: 5 (lower is better)
Translates to: RGRETECRVPPMEEV*EDMGLCCCTVDGKG
Trigger: GCCTTTTCCATCTACGGTGCAGCAGCATAGCCCCATGTCCTCTCAGACCTCCTCCATCGGTGGTACTCTGCACTCCGTCTCCCTGCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 90 bp TGCAGCAAGTTGCTGACTCGGCCTCTGTGCTCCGATGCCTTCCCATaGCCAGGAGAGTTCTCCTGCTTCTCCACGGCTCCTTTGGCAGCT +
Preference number: 5 (lower is better)
Translates to: CSKLLTRPLCSDAFP*PGEFSCFSTAPLAA
Trigger: AGCTGCCAAAGGAGCCGTGGAGAAGCAGGAGAACTCTCCTGGTCATGGGAAGGCATCGGAGCACAGAGGCCGAGTCAGCAACTTGCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp AGTCTGGGTAGAAGTAGGCGGGGTCTTCTAGAATCTGCACAGGACTaGTGGGGCTGTAGCAGATGGGAGGAGGAGCTAACTCCTCCGGGC +
Preference number: 5 (lower is better)
Translates to: SLGRSRRGLLESAQD*WGCSRWEEELTPPG
Trigger: GCCCGGAGGAGTTAGCTCCTCCTCCCATCTGCTACAGCCCCAGCAGTCCTGTGCAGATTCTAGAAGACCCCGCCTACTTCTACCCAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223132.2
CDS CCA 90 bp GCTTTAGTTCTTTCAGGGCCTCATCCTTATGCGCCTGTCCACTGTTaGCCCGGTTCACTGTGGGCCTCCCCTCAGTGCGGGACTTCTGAC +
Preference number: 5 (lower is better)
Translates to: ALVLSGPHPYAPVHC*PGSLWASPQCGTSD
Trigger: GTCAGAAGTCCCGCACTGAGGGGAGGCCCACAGTGAACCGGGCCAACAGTGGACAGGCGCATAAGGATGAGGCCCTGAAAGAACTAAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp CCTTCCCATGACCAGGAGAGTTCTCCTGCTTCTCCACGGCTCCTTTaGCAGCTGGATGCTTTAGGATGGGGCTGTTGGAAGGGGCTGTGC +
Preference number: 5 (lower is better)
Translates to: PSHDQESSPASPRLL*QLDALGWGCWKGLC
Trigger: GCACAGCCCCTTCCAACAGCCCCATCCTAAAGCATCCAGCTGCCAAAGGAGCCGTGGAGAAGCAGGAGAACTCTCCTGGTCATGGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGAGAGCTGGGGAGGTGTaGCTTAGCCCCATTCCTCTC +
Preference number: 5 (lower is better)
Translates to: GMALCLSTATRAEWGRGERAGEV*LSPIPL
Trigger: GAGAGGAATGGGGCTAAGCAACACCTCCCCAGCTCT...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS TCA 90 bp TGGGCCTTGGCTTCCTCATACGTGGGGAGCTCCTCGTTGTTCTGCTaGGGCTGTGTGGACCGGACCTGCTTCTCCATCACCGTATTGTCT +
Preference number: 5 (lower is better)
Translates to: WALASSYVGSSSLFC*GCVDRTCFSITVLS
Trigger: AGACAATACGGTGATGGAGAAGCAGGTCCGGTCCACACAGCCTCAGCAGAACAACGAGGAGCTCCCCACGTATGAGGAAGCCAAGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp GAGCTGGGGAGGTGTTGCTTAGCCCCATTCCTCTCCAGTGACAGCTaGATGATCCTCTCACTGAGGGACCGGACATGGCCCTGCTTTAGT +
Preference number: 5 (lower is better)
Translates to: ELGRCCLAPFLSSDS*MILSLRDRTWPCFS
Trigger: ACTAAAGCAGGGCCATGTCCGGTCCCTCAGTGAGAGGATCATGCAGCTGTCACTGGAGAGGAATGGGGCTAAGCAACACCTCCCCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp CTTGGTCTTGAAGGGGTATTCAGGTGGAGGGCCACGAGGGTCCAGTaGTTTACAGACAGGCTGAGCTGGGGATGGCTCTCCTCCAGCTTT +
Preference number: 5 (lower is better)
Translates to: LGLEGVFRWRATRVQ*FTDRLSWGWLSSSF
Trigger: AAAGCTGGAGGAGAGCCATCCCCAGCTCAGCCTGTCTGTAAAGCACTGGACCCTCGTGGCCCTCCACCTGAATACCCCTTCAAGACCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp TGGCTGATACCTCAGGACGGCCACTTCTGTTCTCGCAGGCTGAGGTaGTGGGTAAGGTTTGACCATCTCATGGAGTACCCCAGGGTGCTG +
Preference number: 5 (lower is better)
Translates to: WLIPQDGHFCSRRLR*WVRFDHLMEYPRVL
Trigger: CAGCACCCTGGGGTACTCCATGAGATGGTCAAACCTTACCCAGCACCTCAGCCTGCGAGAACAGAAGTGGCCGTCCTGAGGTATCAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp AGGGCCACGAGGGTCCAGTGCTTTACAGACAGGCTGAGCTGGGGATaGCTCTCCTCCAGCTTTGAAGCTCTTTCCATTTCCAGAGCTGGG +
Preference number: 5 (lower is better)
Translates to: RATRVQCFTDRLSWG*LSSSFEALSISRAG
Trigger: CCCAGCTCTGGAAATGGAAAGAGCTTCAAAGCTGGAGGAGAGCCATCCCCAGCTCAGCCTGTCTGTAAAGCACTGGACCCTCGTGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp CTGATACCTCAGGACGGCCACTTCTGTTCTCGCAGGCTGAGGTGCTaGGTAAGGTTTGACCATCTCATGGAGTACCCCAGGGTGCTGGTC +
Preference number: 5 (lower is better)
Translates to: LIPQDGHFCSRRLRC*VRFDHLMEYPRVLV
Trigger: GACCAGCACCCTGGGGTACTCCATGAGATGGTCAAACCTTACCCAGCACCTCAGCCTGCGAGAACAGAAGTGGCCGTCCTGAGGTATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp CTTCCTCATACGTGGGGAGCTCCTCGTTGTTCTGCTGAGGCTGTGTaGACCGGACCTGCTTCTCCATCACCGTATTGTCTCCCTGATGCT +
Preference number: 5 (lower is better)
Translates to: LPHTWGAPRCSAEAV*TGPASPSPYCLPDA
Trigger: AGCATCAGGGAGACAATACGGTGATGGAGAAGCAGGTCCGGTCCACACAGCCTCAGCAGAACAACGAGGAGCTCCCCACGTATGAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp AGGTGGAGGGCCACGAGGGTCCAGTGCTTTACAGACAGGCTGAGCTaGGGATGGCTCTCCTCCAGCTTTGAAGCTCTTTCCATTTCCAGA +
Preference number: 5 (lower is better)
Translates to: RWRATRVQCFTDRLS*GWLSSSFEALSISR
Trigger: TCTGGAAATGGAAAGAGCTTCAAAGCTGGAGGAGAGCCATCCCCAGCTCAGCCTGTCTGTAAAGCACTGGACCCTCGTGGCCCTCCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp GCTGACTGGGGATTTCATTGGCTTGGTCTTGAAGGGGTATTCAGGTaGAGGGCCACGAGGGTCCAGTGCTTTACAGACAGGCTGAGCTGG +
Preference number: 5 (lower is better)
Translates to: ADWGFHWLGLEGVFR*RATRVQCFTDRLSW
Trigger: CCAGCTCAGCCTGTCTGTAAAGCACTGGACCCTCGTGGCCCTCCACCTGAATACCCCTTCAAGACCAAGCCAATGAAATCCCCAGTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp TGCGCATTGCTCAAAGCCTGGTCCAGGATCTCGATGTGCCTCCGATaGTCCTCACTTGCCGTACGCACTGCTGCCAACTCCATTTCCAAC +
Preference number: 5 (lower is better)
Translates to: CALLKAWSRISMCLR*SSLAVRTAANSISN
Trigger: GTTGGAAATGGAGTTGGCAGCAGTGCGTACGGCAAGTGAGGACCATCGGAGGCACATCGAGATCCTGGACCAGGCTTTGAGCAATGCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp TGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCGGTGCCATAGCGCAGTaGTTCCTGGATCAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: CDESTPVLVLQLLLQLPIGAIAQ*FLDQPL
Trigger: CAGCGGCTGATCCAGGAACAACTGCGCTATGGCACC...GATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGCAGGATCTCTACCATTaGCTGGGCTCGCTCCACAAT +
Preference number: 5 (lower is better)
Translates to: GMALCLSTATRAEWGRGEQDLYH*LGSLHN
Trigger: ATTGTGGAGCGAGCCCAGCAAATGGTAGAGATCCTG...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp GGGATGGCACTGTGCTTATCAACAGCAACCAGGGCAGAATGGGGCAGGGGAGAGCGAGCTTGGTTCTCATaGCCTTGTCCAGAGACTCAC +
Preference number: 5 (lower is better)
Translates to: GMALCLSTATRAEWGRGERAWFS*PCPETH
Trigger: GTGAGTCTCTGGACAAGGCAATGAGAACCAAGCTCG...CTCTCCCCTGCCCCATTCTGCCCTGGTTGCTGTTGATAAGCACAGTGCCATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTGGCTTGTGCAGCAAGTaGCTGACTCGGCCTCTGTGC +
Preference number: 5 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECGLCSK*LTRPLC
Trigger: GCACAGAGGCCGAGTCAGCAACTTGCTGCACAAGCC...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS TCA 90 bp GTTCTTGGCGGGCCGACTGATAGACCATTTGTGGATCTTCTTGAGTaGGGGTTTCCGTGGAAGAAAAGTTGGTGGTGGCGTGGGCTGGCC +
Preference number: 5 (lower is better)
Translates to: VLGGPTDRPFVDLLE*GFPWKKSWWWRGLA
Trigger: GGCCAGCCCACGCCACCACCAACTTTTCTTCCACGGAAACCCTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp TGGCCTGGTGCTGAATGGCCAGCAGGTTCATGTTCTCAGTTGGGGTaGCATAGCGCAGTTGTTCCTGGATCAGCCGCTGTAACACTCTTC +
Preference number: 5 (lower is better)
Translates to: WPGAEWPAGSCSQLG*HSAVVPGSAAVTLF
Trigger: GAAGAGTGTTACAGCGGCTGATCCAGGAACAACTGCGCTATGGCACCCCAACTGAGAACATGAACCTGCTGGCCATTCAGCACCAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013220.8
ENSMUST00000162901.8
ENSMUST00000223132.2
CDS GCA 90 bp AGTGACAGCTGCATGATCCTCTCACTGAGGGACCGGACATGGCCCTaGTTTAGTTCTTTCAGGGCCTCATCCTTATGCGCCTGTCCACTG +
Preference number: 5 (lower is better)
Translates to: SDSCMILSLRDRTWP*FSSFRASSLCACPL
Trigger: CAGTGGACAGGCGCATAAGGATGAGGCCCTGAAAGAACTAAAGCAGGGCCATGTCCGGTCCCTCAGTGAGAGGATCATGCAGCTGTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp CTCTCCAGTGACAGCTGCATGATCCTCTCACTGAGGGACCGGACATaGCCCTGCTTTAGTTCTTTCAGGGCCTCATCCTTATGCGCCTGT +
Preference number: 5 (lower is better)
Translates to: LSSDSCMILSLRDRT*PCFSSFRASSLCAC
Trigger: ACAGGCGCATAAGGATGAGGCCCTGAAAGAACTAAAGCAGGGCCATGTCCGGTCCCTCAGTGAGAGGATCATGCAGCTGTCACTGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 90 bp GGACGGCCACTTCTGTTCTCGCAGGCTGAGGTGCTGGGTAAGGTTTaGCCATCTCATGGAGTACCCCAGGGTGCTGGTCATTGTAGTAAA +
Preference number: 5 (lower is better)
Translates to: GRPLLFSQAEVLGKV*PSHGVPQGAGHCSK
Trigger: TTTACTACAATGACCAGCACCCTGGGGTACTCCATGAGATGGTCAAACCTTACCCAGCACCTCAGCCTGCGAGAACAGAAGTGGCCGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp CGTAATGGCTCTCTGCAGCTTTGTCTTCATGCCCATCGTATTCCCTaGTGGACAGCTGCCTGTTGGCTGTCTCCAGTCGATCTCGGAGAT +
Preference number: 5 (lower is better)
Translates to: RNGSLQLCLHAHRIP*WTAACWLSPVDLGD
Trigger: ATCTCCGAGATCGACTGGAGACAGCCAACAGGCAGCTGTCCAGCAGGGAATACGATGGGCATGAAGACAAAGCTGCAGAGAGCCATTACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp TCTTCCTTTTTCTCTTCTGTCAGCTGGCTGCTGGTAAGAGAAGTCTaGCGAGAATGTGTCCCAGTGGCCGCAGCGATGGATGGGACAGAG +
Preference number: 5 (lower is better)
Translates to: SSFFSSVSWLLVREV*RECVPVAAAMDGTE
Trigger: CTCTGTCCCATCCATCGCTGCGGCCACTGGGACACATTCTCGCCAGACTTCTCTTACCAGCAGCCAGCTGACAGAAGAGAAAAAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp CAGTTGCTACTGCAACTGCCCATCTGGAGCTCTTCTTTCAGCCTCTGTTCTCATGTCTCCCTGATGCTCTaGACCCTGCGGTTCTTGGCG +
Preference number: 5 (lower is better)
Translates to: QLLLQLPIWSSSFSLCSHVSLML*TLRFLA
Trigger: CGCCAAGAACCGCAGGGTCAAGAGCATCAGGGAGAC...ATGAGAACAGAGGCTGAAAGAAGAGCTCCAGATGGGCAGTTGCAGTAGCAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTGGTCCAAGCTGCTGGTaGGGGGAGGCTGGTAGGGGC +
Preference number: 5 (lower is better)
Translates to: FLKEGVSSPGEHIETNPAGPSCW*GEAGRG
Trigger: GCCCCTACCAGCCTCCCCCAACCAGCAGCTTGGACC...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS GCA 90 bp CCTCCAGCTTTGAAGCTCTTTCCATTTCCAGAGCTGGGGAGGTGTTaGTTAGCCCCATTCCTCTCCAGTGACAGCTGCATGATCCTCTCA +
Preference number: 5 (lower is better)
Translates to: PPALKLFPFPELGRC*LAPFLSSDSCMILS
Trigger: TGAGAGGATCATGCAGCTGTCACTGGAGAGGAATGGGGCTAAGCAACACCTCCCCAGCTCTGGAAATGGAAAGAGCTTCAAAGCTGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 90 bp CAAAGCCTGGTCCAGGATCTCGATGTGCCTCCGATGGTCCTCACTTaGCGTACGCACTGCTGCCAACTCCATTTCCAACTTTTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: QSLVQDLDVPPMVLT*RTHCCQLHFQLFLF
Trigger: GAAAAGGAAAAGTTGGAAATGGAGTTGGCAGCAGTGCGTACGGCAAGTGAGGACCATCGGAGGCACATCGAGATCCTGGACCAGGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGTTGACCCTGCGGTTCTaGGCGGGCCGACTGATAGAC +
Preference number: 5 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLLTLRF*AGRLID
Trigger: GTCTATCAGTCGGCCCGCCAAGAACCGCAGGGTCAA...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS CCA 90 bp CTCTTGACCCTGCGGTTCTTGGCGGGCCGACTGATAGACCATTTGTaGATCTTCTTGAGTGAGGGTTTCCGTGGAAGAAAAGTTGGTGGT +
Preference number: 5 (lower is better)
Translates to: LLTLRFLAGRLIDHL*IFLSEGFRGRKVGG
Trigger: ACCACCAACTTTTCTTCCACGGAAACCCTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAAGAACCGCAGGGTCAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 90 bp GTAGTAAAGACCGTGATCTTGGTTCTTGCTGACTGGGGATTTCATTaGCTTGGTCTTGAAGGGGTATTCAGGTGGAGGGCCACGAGGGTC +
Preference number: 5 (lower is better)
Translates to: VVKTVILVLADWGFH*LGLEGVFRWRATRV
Trigger: GACCCTCGTGGCCCTCCACCTGAATACCCCTTCAAGACCAAGCCAATGAAATCCCCAGTCAGCAAGAACCAAGATCACGGTCTTTACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp TGTGACGAGTCCACACCTGTCCTGGTTTTGCAGTTGCTACTGCAACTGCCCATCGTAAAGACCGTGATCTaGGTTCTTGCTGACTGGGGA +
Preference number: 5 (lower is better)
Translates to: CDESTPVLVLQLLLQLPIVKTVI*VLADWG
Trigger: TCCCCAGTCAGCAAGAACCAAGATCACGGTCTTTAC...GATGGGCAGTTGCAGTAGCAACTGCAAAACCAGGACAGGTGTGGACTCGTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGATCCAGAGACTCACGCTaGGTGGTGGACTTGACCAGG +
Preference number: 5 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGSRDSR*VVDLTR
Trigger: CCTGGTCAAGTCCACCACCAAGCGTGAGTCTCTGGA...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGACTGGACAGCTGCCTGTaGGCTGTCTCCAGTCGATCT +
Preference number: 5 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGLDSCL*AVSSRS
Trigger: AGATCGACTGGAGACAGCCAACAGGCAGCTGTCCAG...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp TCTCAGACAAAGCCACGAGTAAACACAACAAAGGCGGGAAAACGTGAGAAGCTGCCATTCCTCGAGTGGTaGCTGATGGTGGTGTCCCTC +
Preference number: 5 (lower is better)
Translates to: SQTKPRVNTTKAGKREKLPFLEW*LMVVSL
Trigger: GAGGGACACCACCATCAGCAACCACTCGAGGAATGG...CAGCTTCTCACGTTTTCCCGCCTTTGTTGTGTTTACTCGTGGCTTTGTCTGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS TCA 90 bp ACAGCTGCCTGTTGGCTGTCTCCAGTCGATCTCGGAGATCTCTGTTaGAGTCATGAAGTCTCCTTATCTCGCCTTCGAGCTTGGTTCTCA +
Preference number: 5 (lower is better)
Translates to: TAACWLSPVDLGDLC*SHEVSLSRLRAWFS
Trigger: TGAGAACCAAGCTCGAAGGCGAGATAAGGAGACTTCATGACTTCAACAGAGATCTCCGAGATCGACTGGAGACAGCCAACAGGCAGCTGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTAACTGGGACTGGGCCTaGGCTTCCTCATACGTGGGG +
Preference number: 5 (lower is better)
Translates to: FLKEGVSSPGEHIETNPANWDWA*ASSYVG
Trigger: CCCCACGTATGAGGAAGCCAAGGCCCAGTCCCAGTT...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS TCA 90 bp CTGTTGGCTGTCTCCAGTCGATCTCGGAGATCTCTGTTGAAGTCATaGAGTCTCCTTATCTCGCCTTCGAGCTTGGTTCTCATTGCCTTG +
Preference number: 5 (lower is better)
Translates to: LLAVSSRSRRSLLKS*SLLISPSSLVLIAL
Trigger: CAAGGCAATGAGAACCAAGCTCGAAGGCGAGATAAGGAGACTTCATGACTTCAACAGAGATCTCCGAGATCGACTGGAGACAGCCAACAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp CAAAGCAGGACAGAGCCTCTCTACAGGGGATACCAGAGCTTTTGTCCCGAGTGTCGACTGATAGACCATTaGTGGATCTTCTTGAGTGAG +
Preference number: 5 (lower is better)
Translates to: QSRTEPLYRGYQSFCPECRLIDH*WIFLSE
Trigger: CTCACTCAAGAAGATCCACAAATGGTCTATCAGTCG...ACACTCGGGACAAAAGCTCTGGTATCCCCTGTAGAGAGGCTCTGTCCTGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp GTGGCTCAGACATGGTCTCAGGGCTGGAAGATCTCACCAATTCCCCATCTCTATTTCATTGGCTTGGTCTaGAAGGGGTATTCAGGTGGA +
Preference number: 5 (lower is better)
Translates to: VAQTWSQGWKISPIPHLYFIGLV*KGYSGG
Trigger: TCCACCTGAATACCCCTTCAAGACCAAGCCAATGAA...ATAGAGATGGGGAATTGGTGAGATCTTCCAGCCCTGAGACCATGTCTGAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS CCA 90 bp GTGCTGGTCATTGTAGTAAAGACCGTGATCTTGGTTCTTGCTGACTaGGGATTTCATTGGCTTGGTCTTGAAGGGGTATTCAGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: VLVIVVKTVILVLAD*GFHWLGLEGVFRWR
Trigger: CCTCCACCTGAATACCCCTTCAAGACCAAGCCAATGAAATCCCCAGTCAGCAAGAACCAAGATCACGGTCTTTACTACAATGACCAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp CACAGAAAAATGTCAAGCCTTATACATGGGCTCCAAAGAGAGACCTCTGCGGGATGGCTCTCTGCAGCTTaGTCTTCATGCCCATCGTAT +
Preference number: 5 (lower is better)
Translates to: HRKMSSLIHGLQRETSAGWLSAA*SSCPSY
Trigger: ATACGATGGGCATGAAGACAAAGCTGCAGAGAGCCA...TCCCGCAGAGGTCTCTCTTTGGAGCCCATGTATAAGGCTTGACATTTTTCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp AAGCAAAGCTTCACACTCTCTGAAATCACAAACCACAAACGAAACAGCCAAGAATCCGATGGTCCTCACTaGCCGTACGCACTGCTGCCA +
Preference number: 5 (lower is better)
Translates to: KQSFTLSEITNHKRNSQESDGPH*PYALLP
Trigger: TGGCAGCAGTGCGTACGGCAAGTGAGGACCATCGGA...TTCTTGGCTGTTTCGTTTGTGGTTTGTGATTTCAGAGAGTGTGAAGCTTTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp AGTGATGAGGAAGGGGACTTGGAAATAAACCTTACTGATCTGGAGATAGTTCACAAGAGCTCCGTGCTCTaGTCGGTCTGTGTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: SDEEGDLEINLTDLEIVHKSSVL*SVCVLL
Trigger: CAGCAGCACACAGACCGACAAGAGCACGGAGCTCTT...GTGAACTATCTCCAGATCAGTAAGGTTTATTTCCAAGTCCCCTTCCTCATCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS GCA 90 bp CTTTTCCTTCAAGAATTCTTTGTTCTGGGACACGTAATGGCTCTCTaGAGCTTTGTCTTCATGCCCATCGTATTCCCTGCTGGACAGCTG +
Preference number: 5 (lower is better)
Translates to: LFLQEFFVLGHVMAL*SFVFMPIVFPAGQL
Trigger: CAGCTGTCCAGCAGGGAATACGATGGGCATGAAGACAAAGCTGCAGAGAGCCATTACGTGTCCCAGAACAAAGAATTCTTGAAGGAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS-3UTR CAA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAAACTCTAGCCTGCGCATaGCTCAAAGCCTGGTCCAGG +
Preference number: 5 (lower is better)
Translates to: LSATAFIYPFFIPREDPQTLACA*LKAWSR
Trigger: CCTGGACCAGGCTTTGAGCAATGCGCAGGCTAGAGT...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTGGCTCTCCTCCAGCTTaGAAGCTCTTTCCATTTCCA +
Preference number: 5 (lower is better)
Translates to: FLKEGVSSPGEHIETNPAGSPPA*KLFPFP
Trigger: TGGAAATGGAAAGAGCTTCAAAGCTGGAGGAGAGCC...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp TTTCTTAAAGAGGGTGTGAGCTCACCTGGAGAACACATAGAAACAAACCCTGCTGGGGATTTCATTGGCTaGGTCTTGAAGGGGTATTCA +
Preference number: 5 (lower is better)
Translates to: FLKEGVSSPGEHIETNPAGDFIG*VLKGYS
Trigger: TGAATACCCCTTCAAGACCAAGCCAATGAAATCCCC...AGCAGGGTTTGTTTCTATGTGTTCTCCAGGTGAGCTCACACCCTCTTTAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS-3UTR CAA 90 bp CTAAGTGCCACAGCCTTTATTTATCCTTTCTTTATCCCAAGAGAAGACCCTCAAATCTCGCCTTCGAGCTaGGTTCTCATTGCCTTGTCC +
Preference number: 5 (lower is better)
Translates to: LSATAFIYPFFIPREDPQISPSS*VLIALS
Trigger: GGACAAGGCAATGAGAACCAAGCTCGAAGGCGAGAT...TTGAGGGTCTTCTCTTGGGATAAAGAAAGGATAAATAAAGGCTGTGGCACTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000013220.8
CDS TCA 72 bp CAGGGCCGGCTGGTGACGCCATACTCCGGGGGTGGCTaGTACCTCAGGACGGCCACTTCTGTTCTCGCAGGC +
Preference number: 6 (lower is better)
Translates to: QGRLVTPYSGGG*YLRTATSVLAG
Trigger: GCCTGCGAGAACAGAAGTGGCCGTCCTGAGGTATCAGCCACCCCCGGAGTATGGCGTCACCAGCCGGCCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp CTGGCGAGAATGTGTCCCAGTGGCCGCAGCGATGGATaGGACAGAGCGGGCAGGCCTCAGGCTGGCAGAGTC +
Preference number: 6 (lower is better)
Translates to: LARMCPSGRSDG*DRAGRPQAGRV
Trigger: GACTCTGCCAGCCTGAGGCCTGCCCGCTCTGTCCCATCCATCGCTGCGGCCACTGGGACACATTCTCGCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp TCCCTCTCCAGCCAGGTCCGCAACCTGCGTTCCATCTaGCCTCGCTTCTCGCACGCTGACTGCAGCTGGGTC +
Preference number: 6 (lower is better)
Translates to: SLSSQVRNLRSI*PRFSHADCSWV
Trigger: GACCCAGCTGCAGTCAGCGTGCGAGAAGCGAGGGCAGATGGAACGCAGGTTGCGGACCTGGCTGGAGAGGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp GCTGCTGGCCGATGTGGTAGAGGCCGGAAGGGACAATaGAGAGGCAGGTGTGGTCGGCAGCAGAGGGGCAGA +
Preference number: 6 (lower is better)
Translates to: AAGRCGRGRKGQ*RGRCGRQQRGR
Trigger: TCTGCCCCTCTGCTGCCGACCACACCTGCCTCTGCATTGTCCCTTCCGGCCTCTACCACATCGGCCAGCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp GGGCTATGCTGCTGCACCGTAGATGGAAAAGGCAGCTaGCAGGGCCGGCTGGTGACGCCATACTCCGGGGGT +
Preference number: 6 (lower is better)
Translates to: GLCCCTVDGKGS*QGRLVTPYSGG
Trigger: ACCCCCGGAGTATGGCGTCACCAGCCGGCCCTGCCAGCTGCCTTTTCCATCTACGGTGCAGCAGCATAGCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp CGCTCCACAATCGCAAAGGCATCCGGTCCAAGCTGCTaGTTGGGGGAGGCTGGTAGGGGCTGTGAAGCCGCC +
Preference number: 6 (lower is better)
Translates to: RSTIAKASGPSC*LGEAGRGCEAA
Trigger: GGCGGCTTCACAGCCCCTACCAGCCTCCCCCAACCAGCAGCTTGGACCGGATGCCTTTGCGATTGTGGAGCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp AAGTCTGGCGAGAATGTGTCCCAGTGGCCGCAGCGATaGATGGGACAGAGCGGGCAGGCCTCAGGCTGGCAG +
Preference number: 6 (lower is better)
Translates to: KSGENVSQWPQR*MGQSGQASGWQ
Trigger: CTGCCAGCCTGAGGCCTGCCCGCTCTGTCCCATCCATCGCTGCGGCCACTGGGACACATTCTCGCCAGACTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp GTGTGGCTAAGGGGCCCCTGTCCCTGCTGCTGTTGCTaGTGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: VWLRGPCPCCCC*CCCCCCCCCCC
Trigger: GCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGGGACAGGGGCCCCTTAGCCACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp GATGGTGGTGTCCCTCTCGGCTGTGGCAGCGGCAGCTaGGCTCATGGCAAAGTGCCGGATGGTGCTCTCTTC +
Preference number: 6 (lower is better)
Translates to: DGGVPLGCGSGS*AHGKVPDGALF
Trigger: GAAGAGAGCACCATCCGGCACTTTGCCATGAGCGCAGCTGCCGCTGCCACAGCCGAGAGGGACACCACCATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp CTTTCAGGGCCTCATCCTTATGCGCCTGTCCACTGTTaGCCCGGTTCACTGTGGGCCTCCCCTCAGTGCGGG +
Preference number: 6 (lower is better)
Translates to: LSGPHPYAPVHC*PGSLWASPQCG
Trigger: CCCGCACTGAGGGGAGGCCCACAGTGAACCGGGCCAACAGTGGACAGGCGCATAAGGATGAGGCCCTGAAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 72 bp AAGGGGCCCCTGTCCCTGCTGCTGTTGCTGCTGCTGTaGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGTCC +
Preference number: 6 (lower is better)
Translates to: KGPLSLLLLLLL*LLLLLLLLLLS
Trigger: GGACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGGGACAGGGGCCCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 90 bp CCCCTGTCCCTGCTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGTaGCTGCTGCTGCTGCTGTCCCCTGAAGAACTGGGACTGGGCCTT +
Preference number: 6 (lower is better)
Translates to: PLSLLLLLLLLLLLL*LLLLLSPEELGLGL
Trigger: AAGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGGGACAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp AGCTCTCCCCATAGCTGCCATTCCTCGAGTGGTTGCTaGTGGTGGTGTCCCTCTCGGCTGTGGCAGCGGCAG +
Preference number: 6 (lower is better)
Translates to: SSPHSCHSSSGC*WWCPSRLWQRQ
Trigger: CTGCCGCTGCCACAGCCGAGAGGGACACCACCATCAGCAACCACTCGAGGAATGGCAGCTATGGGGAGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp TCGGCTGTGGCAGCGGCAGCTGCGCTCATGGCAAAGTaGCGGATGGTGCTCTCTTCCAGGTACTTCTGCTCC +
Preference number: 6 (lower is better)
Translates to: SAVAAAAALMAK*RMVLSSRYFCS
Trigger: GGAGCAGAAGTACCTGGAAGAGAGCACCATCCGGCACTTTGCCATGAGCGCAGCTGCCGCTGCCACAGCCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp GGGCTGGCCCTGCACTCCCTGTGGCCTGGTGCTGAATaGCCAGCAGGTTCATGTTCTCAGTTGGGGTGCCAT +
Preference number: 6 (lower is better)
Translates to: GLALHSLWPGAE*PAGSCSQLGCH
Trigger: ATGGCACCCCAACTGAGAACATGAACCTGCTGGCCATTCAGCACCAGGCCACAGGGAGTGCAGGGCCAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013220.8
ENSMUST00000162901.8
ENSMUST00000223132.2
CDS CCA 72 bp TGCTGCTGCTGCTGCTGTCCCCTGAAGAACTGGGACTaGGCCTTGGCTTCCTCATACGTGGGGAGCTCCTCG +
Preference number: 6 (lower is better)
Translates to: CCCCCCPLKNWD*ALASSYVGSSS
Trigger: CGAGGAGCTCCCCACGTATGAGGAAGCCAAGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp GCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGTCCCCTaGAGAACTGGGACTGGGCCTTGGCTTCCTCATACG +
Preference number: 6 (lower is better)
Translates to: AAAAVAAAAAVP*RTGTGPWLPHT
Trigger: CGTATGAGGAAGCCAAGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAGCAGCAGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp TGCTGCTGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTaGTGCTGTCCCCTGAAGAACTGGGACTGGGCCTTG +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*CCPLKNWDWAL
Trigger: CAAGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp TGTTGCTGCTGCTGTTGCTGCTGCTGCTGTTGCTGCTaGTGCTGCTGTCCCCTGAAGAACTGGGACTGGGCC +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*CCCPLKNWDWA
Trigger: GGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp GAAGGGGTATTCAGGTGGAGGGCCACGAGGGTCCAGTaGTTTACAGACAGGCTGAGCTGGGGATGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: EGVFRWRATRVQ*FTDRLSWGWLS
Trigger: GGAGAGCCATCCCCAGCTCAGCCTGTCTGTAAAGCACTGGACCCTCGTGGCCCTCCACCTGAATACCCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp TGCTGTTGCTGCTGCTGCTGCTGTCCCCTGAAGAACTaGGACTGGGCCTTGGCTTCCTCATACGTGGGGAGC +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCPLKN*DWALASSYVGS
Trigger: GCTCCCCACGTATGAGGAAGCCAAGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp TTGCTGACTCGGCCTCTGTGCTCCGATGCCTTCCCATaGCCAGGAGAGTTCTCCTGCTTCTCCACGGCTCCT +
Preference number: 6 (lower is better)
Translates to: LLTRPLCSDAFP*PGEFSCFSTAP
Trigger: AGGAGCCGTGGAGAAGCAGGAGAACTCTCCTGGTCATGGGAAGGCATCGGAGCACAGAGGCCGAGTCAGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp CTCAAAGCCTGGTCCAGGATCTCGATGTGCCTCCGATaGTCCTCACTTGCCGTACGCACTGCTGCCAACTCC +
Preference number: 6 (lower is better)
Translates to: LKAWSRISMCLR*SSLAVRTAANS
Trigger: GGAGTTGGCAGCAGTGCGTACGGCAAGTGAGGACCATCGGAGGCACATCGAGATCCTGGACCAGGCTTTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp GGTGTGGTCGGCAGCAGAGGGGCAGATGCCTGTCCCTaGTGTTCCTTTCCCAGCAGGAATCCTATACTCCCT +
Preference number: 6 (lower is better)
Translates to: GVVGSRGADACP*CSFPSRNPILP
Trigger: AGGGAGTATAGGATTCCTGCTGGGAAAGGAACACCAGGGACAGGCATCTGCCCCTCTGCTGCCGACCACACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 90 bp GGACCGGACCTGCTTCTCCATCACCGTATTGTCTCCCTGATGCTCTaGACCCTGCGGTTCTTGGCGGGCCGACTGATAGACCATTTGTGG +
Preference number: 6 (lower is better)
Translates to: GPDLLLHHRIVSLML*TLRFLAGRLIDHLW
Trigger: CCACAAATGGTCTATCAGTCGGCCCGCCAAGAACCGCAGGGTCAAGAGCATCAGGGAGACAATACGGTGATGGAGAAGCAGGTCCGGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp GAGACGGAGTGCAGAGTACCACCGATGGAGGAGGTCTaGGAGGACATGGGGCTATGCTGCTGCACCGTAGAT +
Preference number: 6 (lower is better)
Translates to: ETECRVPPMEEV*EDMGLCCCTVD
Trigger: ATCTACGGTGCAGCAGCATAGCCCCATGTCCTCTCAGACCTCCTCCATCGGTGGTACTCTGCACTCCGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp CCTCAGGACGGCCACTTCTGTTCTCGCAGGCTGAGGTaGTGGGTAAGGTTTGACCATCTCATGGAGTACCCC +
Preference number: 6 (lower is better)
Translates to: PQDGHFCSRRLR*WVRFDHLMEYP
Trigger: GGGGTACTCCATGAGATGGTCAAACCTTACCCAGCACCTCAGCCTGCGAGAACAGAAGTGGCCGTCCTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp TGCGCATTGCTCAAAGCCTGGTCCAGGATCTCGATGTaGCTCCGATGGTCCTCACTTGCCGTACGCACTGCT +
Preference number: 6 (lower is better)
Translates to: CALLKAWSRISM*LRWSSLAVRTA
Trigger: AGCAGTGCGTACGGCAAGTGAGGACCATCGGAGGCACATCGAGATCCTGGACCAGGCTTTGAGCAATGCGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp GTGCAGCAAGTTGCTGACTCGGCCTCTGTGCTCCGATaGCTTCCCATGACCAGGAGAGTTCTCCTGCTTCTC +
Preference number: 6 (lower is better)
Translates to: VQQVADSASVLR*LPMTRRVLLLL
Trigger: GAGAAGCAGGAGAACTCTCCTGGTCATGGGAAGGCATCGGAGCACAGAGGCCGAGTCAGCAACTTGCTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp ACGTGGGGAGCTCCTCGTTGTTCTGCTGAGGCTGTGTaGACCGGACCTGCTTCTCCATCACCGTATTGTCTC +
Preference number: 6 (lower is better)
Translates to: TWGAPRCSAEAV*TGPASPSPYCL
Trigger: GAGACAATACGGTGATGGAGAAGCAGGTCCGGTCCACACAGCCTCAGCAGAACAACGAGGAGCTCCCCACGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp GCCACGAGGGTCCAGTGCTTTACAGACAGGCTGAGCTaGGGATGGCTCTCCTCCAGCTTTGAAGCTCTTTCC +
Preference number: 6 (lower is better)
Translates to: ATRVQCFTDRLS*GWLSSSFEALS
Trigger: GGAAAGAGCTTCAAAGCTGGAGGAGAGCCATCCCCAGCTCAGCCTGTCTGTAAAGCACTGGACCCTCGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp CAGGACGGCCACTTCTGTTCTCGCAGGCTGAGGTGCTaGGTAAGGTTTGACCATCTCATGGAGTACCCCAGG +
Preference number: 6 (lower is better)
Translates to: QDGHFCSRRLRC*VRFDHLMEYPR
Trigger: CCTGGGGTACTCCATGAGATGGTCAAACCTTACCCAGCACCTCAGCCTGCGAGAACAGAAGTGGCCGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 72 bp ATCTCGCCATCTGGGAACTCAGGCTTGTGCAGCAAGTaGCTGACTCGGCCTCTGTGCTCCGATGCCTTCCCA +
Preference number: 6 (lower is better)
Translates to: ISPSGNSGLCSK*LTRPLCSDAFP
Trigger: TGGGAAGGCATCGGAGCACAGAGGCCGAGTCAGCAACTTGCTGCACAAGCCTGAGTTCCCAGATGGCGAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 90 bp CTCCTGGTGAAGCACACGGTTCTCCTCTGTCAGGATCTCTACCATTaGCTGGGCTCGCTCCACAATCGCAAAGGCATCCGGTCCAAGCTG +
Preference number: 6 (lower is better)
Translates to: LLVKHTVLLCQDLYH*LGSLHNRKGIRSKL
Trigger: CAGCTTGGACCGGATGCCTTTGCGATTGTGGAGCGAGCCCAGCAAATGGTAGAGATCCTGACAGAGGAGAACCGTGTGCTTCACCAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp CTGGTGCTGAATGGCCAGCAGGTTCATGTTCTCAGTTaGGGTGCCATAGCGCAGTTGTTCCTGGATCAGCCG +
Preference number: 6 (lower is better)
Translates to: LVLNGQQVHVLS*GAIAQLFLDQP
Trigger: CGGCTGATCCAGGAACAACTGCGCTATGGCACCCCAACTGAGAACATGAACCTGCTGGCCATTCAGCACCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013220.8
ENSMUST00000162901.8
ENSMUST00000223132.2
CDS CAA 72 bp CCTGGTGCTGAATGGCCAGCAGGTTCATGTTCTCAGTaGGGGTGCCATAGCGCAGTTGTTCCTGGATCAGCC +
Preference number: 6 (lower is better)
Translates to: PGAEWPAGSCSQ*GCHSAVVPGSA
Trigger: GGCTGATCCAGGAACAACTGCGCTATGGCACCCCAACTGAGAACATGAACCTGCTGGCCATTCAGCACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013220.8
ENSMUST00000162901.8
ENSMUST00000223132.2
CDS CAA 72 bp CTGCTTCTCCATCACCGTATTGTCTCCCTGATGCTCTaGACCCTGCGGTTCTTGGCGGGCCGACTGATAGAC +
Preference number: 6 (lower is better)
Translates to: LLLHHRIVSLML*TLRFLAGRLID
Trigger: GTCTATCAGTCGGCCCGCCAAGAACCGCAGGGTCAAGAGCATCAGGGAGACAATACGGTGATGGAGAAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 72 bp GGTCCAGGATCTCGATGTGCCTCCGATGGTCCTCACTaGCCGTACGCACTGCTGCCAACTCCATTTCCAACT +
Preference number: 6 (lower is better)
Translates to: GPGSRCASDGPH*PYALLPTPFPT
Trigger: AGTTGGAAATGGAGTTGGCAGCAGTGCGTACGGCAAGTGAGGACCATCGGAGGCACATCGAGATCCTGGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 72 bp AGCACTTCCATCATCTCGCCATCTGGGAACTCAGGCTaGTGCAGCAAGTTGCTGACTCGGCCTCTGTGCTCC +
Preference number: 6 (lower is better)
Translates to: STSIISPSGNSG*CSKLLTRPLCS
Trigger: GGAGCACAGAGGCCGAGTCAGCAACTTGCTGCACAAGCCTGAGTTCCCAGATGGCGAGATGATGGAAGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 90 bp CTGCGGTTCTTGGCGGGCCGACTGATAGACCATTTGTGGATCTTCTaGAGTGAGGGTTTCCGTGGAAGAAAAGTTGGTGGTGGCGTGGGC +
Preference number: 6 (lower is better)
Translates to: LRFLAGRLIDHLWIF*SEGFRGRKVGGGVG
Trigger: GCCCACGCCACCACCAACTTTTCTTCCACGGAAACCCTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAAGAACCGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp AGACAGGCTGAGCTGGGGATGGCTCTCCTCCAGCTTTaGAGCTCTTTCCATTTCCAGAGCTGGGGAGGTGTT +
Preference number: 6 (lower is better)
Translates to: RQAELGMALLQL*SSFHFQSWGGV
Trigger: AACACCTCCCCAGCTCTGGAAATGGAAAGAGCTTCAAAGCTGGAGGAGAGCCATCCCCAGCTCAGCCTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp CTTCTGTTCTCGCAGGCTGAGGTGCTGGGTAAGGTTTaGCCATCTCATGGAGTACCCCAGGGTGCTGGTCAT +
Preference number: 6 (lower is better)
Translates to: LLFSQAEVLGKV*PSHGVPQGAGH
Trigger: ATGACCAGCACCCTGGGGTACTCCATGAGATGGTCAAACCTTACCCAGCACCTCAGCCTGCGAGAACAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp GCTGAATGGCCAGCAGGTTCATGTTCTCAGTTGGGGTaGCATAGCGCAGTTGTTCCTGGATCAGCCGCTGTA +
Preference number: 6 (lower is better)
Translates to: AEWPAGSCSQLG*HSAVVPGSAAV
Trigger: TACAGCGGCTGATCCAGGAACAACTGCGCTATGGCACCCCAACTGAGAACATGAACCTGCTGGCCATTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013220.8
ENSMUST00000162901.8
ENSMUST00000223132.2
CDS GCA 72 bp TGCATGATCCTCTCACTGAGGGACCGGACATGGCCCTaGTTTAGTTCTTTCAGGGCCTCATCCTTATGCGCC +
Preference number: 6 (lower is better)
Translates to: CMILSLRDRTWP*FSSFRASSLCA
Trigger: GGCGCATAAGGATGAGGCCCTGAAAGAACTAAAGCAGGGCCATGTCCGGTCCCTCAGTGAGAGGATCATGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp AGCACACGGTTCTCCTCTGTCAGGATCTCTACCATTTaGTGGGCTCGCTCCACAATCGCAAAGGCATCCGGT +
Preference number: 6 (lower is better)
Translates to: STRFSSVRISTI*WARSTIAKASG
Trigger: ACCGGATGCCTTTGCGATTGTGGAGCGAGCCCAGCAAATGGTAGAGATCCTGACAGAGGAGAACCGTGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp GTCCAGGATCTCGATGTGCCTCCGATGGTCCTCACTTaGCGTACGCACTGCTGCCAACTCCATTTCCAACTT +
Preference number: 6 (lower is better)
Translates to: VQDLDVPPMVLT*RTHCCQLHFQL
Trigger: AAGTTGGAAATGGAGTTGGCAGCAGTGCGTACGGCAAGTGAGGACCATCGGAGGCACATCGAGATCCTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp ACTTCCATCATCTCGCCATCTGGGAACTCAGGCTTGTaGAGCAAGTTGCTGACTCGGCCTCTGTGCTCCGAT +
Preference number: 6 (lower is better)
Translates to: TSIISPSGNSGL*SKLLTRPLCSD
Trigger: ATCGGAGCACAGAGGCCGAGTCAGCAACTTGCTGCACAAGCCTGAGTTCCCAGATGGCGAGATGATGGAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp AGAAGTAGGCGGGGTCTTCTAGAATCTGCACAGGACTaGTGGGGCTGTAGCAGATGGGAGGAGGAGCTAACT +
Preference number: 6 (lower is better)
Translates to: RSRRGLLESAQD*WGCSRWEEELT
Trigger: AGTTAGCTCCTCCTCCCATCTGCTACAGCCCCAGCAGTCCTGTGCAGATTCTAGAAGACCCCGCCTACTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223132.2
CDS CCA 72 bp TTCTCTTCTGTCAGCTGGCTGCTGGTAAGAGAAGTCTaGCGAGAATGTGTCCCAGTGGCCGCAGCGATGGAT +
Preference number: 6 (lower is better)
Translates to: FSSVSWLLVREV*RECVPVAAAMD
Trigger: ATCCATCGCTGCGGCCACTGGGACACATTCTCGCCAGACTTCTCTTACCAGCAGCCAGCTGACAGAAGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 72 bp AAGCACACGGTTCTCCTCTGTCAGGATCTCTACCATTaGCTGGGCTCGCTCCACAATCGCAAAGGCATCCGG +
Preference number: 6 (lower is better)
Translates to: KHTVLLCQDLYH*LGSLHNRKGIR
Trigger: CCGGATGCCTTTGCGATTGTGGAGCGAGCCCAGCAAATGGTAGAGATCCTGACAGAGGAGAACCGTGTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp TCTCTGCAGCTTTGTCTTCATGCCCATCGTATTCCCTaGTGGACAGCTGCCTGTTGGCTGTCTCCAGTCGAT +
Preference number: 6 (lower is better)
Translates to: SLQLCLHAHRIP*WTAACWLSPVD
Trigger: ATCGACTGGAGACAGCCAACAGGCAGCTGTCCAGCAGGGAATACGATGGGCATGAAGACAAAGCTGCAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp GACAGCTGCATGATCCTCTCACTGAGGGACCGGACATaGCCCTGCTTTAGTTCTTTCAGGGCCTCATCCTTA +
Preference number: 6 (lower is better)
Translates to: DSCMILSLRDRT*PCFSSFRASSL
Trigger: TAAGGATGAGGCCCTGAAAGAACTAAAGCAGGGCCATGTCCGGTCCCTCAGTGAGAGGATCATGCAGCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp AGGGTCCAGTGCTTTACAGACAGGCTGAGCTGGGGATaGCTCTCCTCCAGCTTTGAAGCTCTTTCCATTTCC +
Preference number: 6 (lower is better)
Translates to: RVQCFTDRLSWG*LSSSFEALSIS
Trigger: GGAAATGGAAAGAGCTTCAAAGCTGGAGGAGAGCCATCCCCAGCTCAGCCTGTCTGTAAAGCACTGGACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp GGATTTCATTGGCTTGGTCTTGAAGGGGTATTCAGGTaGAGGGCCACGAGGGTCCAGTGCTTTACAGACAGG +
Preference number: 6 (lower is better)
Translates to: GFHWLGLEGVFR*RATRVQCFTDR
Trigger: CCTGTCTGTAAAGCACTGGACCCTCGTGGCCCTCCACCTGAATACCCCTTCAAGACCAAGCCAATGAAATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 72 bp ACCCTGCGGTTCTTGGCGGGCCGACTGATAGACCATTaGTGGATCTTCTTGAGTGAGGGTTTCCGTGGAAGA +
Preference number: 6 (lower is better)
Translates to: TLRFLAGRLIDH*WIFLSEGFRGR
Trigger: TCTTCCACGGAAACCCTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAAGAACCGCAGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 72 bp CGTATTGTCTCCCTGATGCTCTTGACCCTGCGGTTCTaGGCGGGCCGACTGATAGACCATTTGTGGATCTTC +
Preference number: 6 (lower is better)
Translates to: RIVSLMLLTLRF*AGRLIDHLWIF
Trigger: GAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAAGAACCGCAGGGTCAAGAGCATCAGGGAGACAATACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 90 bp CTCCATCACCGTATTGTCTCCCTGATGCTCTTGACCCTGCGGTTCTaGGCGGGCCGACTGATAGACCATTTGTGGATCTTCTTGAGTGAG +
Preference number: 6 (lower is better)
Translates to: LHHRIVSLMLLTLRF*AGRLIDHLWIFLSE
Trigger: CTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAAGAACCGCAGGGTCAAGAGCATCAGGGAGACAATACGGTGATGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp TTGAAGCTCTTTCCATTTCCAGAGCTGGGGAGGTGTTaGTTAGCCCCATTCCTCTCCAGTGACAGCTGCATG +
Preference number: 6 (lower is better)
Translates to: LKLFPFPELGRC*LAPFLSSDSCM
Trigger: CATGCAGCTGTCACTGGAGAGGAATGGGGCTAAGCAACACCTCCCCAGCTCTGGAAATGGAAAGAGCTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp ACCGTGATCTTGGTTCTTGCTGACTGGGGATTTCATTaGCTTGGTCTTGAAGGGGTATTCAGGTGGAGGGCC +
Preference number: 6 (lower is better)
Translates to: TVILVLADWGFH*LGLEGVFRWRA
Trigger: GGCCCTCCACCTGAATACCCCTTCAAGACCAAGCCAATGAAATCCCCAGTCAGCAAGAACCAAGATCACGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 90 bp TCAAAGCCTGGTCCAGGATCTCGATGTGCCTCCGATGGTCCTCACTaGCCGTACGCACTGCTGCCAACTCCATTTCCAACTTTTCCTTTT +
Preference number: 6 (lower is better)
Translates to: SKPGPGSRCASDGPH*PYALLPTPFPTFPF
Trigger: AAAAGGAAAAGTTGGAAATGGAGTTGGCAGCAGTGCGTACGGCAAGTGAGGACCATCGGAGGCACATCGAGATCCTGGACCAGGCTTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 90 bp ATGCTCTTGACCCTGCGGTTCTTGGCGGGCCGACTGATAGACCATTaGTGGATCTTCTTGAGTGAGGGTTTCCGTGGAAGAAAAGTTGGT +
Preference number: 6 (lower is better)
Translates to: MLLTLRFLAGRLIDH*WIFLSEGFRGRKVG
Trigger: ACCAACTTTTCTTCCACGGAAACCCTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAAGAACCGCAGGGTCAAGAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp GGGCCGACTGATAGACCATTTGTGGATCTTCTTGAGTaGGGGTTTCCGTGGAAGAAAAGTTGGTGGTGGCGT +
Preference number: 6 (lower is better)
Translates to: GPTDRPFVDLLE*GFPWKKSWWWR
Trigger: ACGCCACCACCAACTTTTCTTCCACGGAAACCCTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp CTGCGGTTCTTGGCGGGCCGACTGATAGACCATTTGTaGATCTTCTTGAGTGAGGGTTTCCGTGGAAGAAAA +
Preference number: 6 (lower is better)
Translates to: LRFLAGRLIDHL*IFLSEGFRGRK
Trigger: TTTTCTTCCACGGAAACCCTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAAGAACCGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 90 bp ATGGAGTACCCCAGGGTGCTGGTCATTGTAGTAAAGACCGTGATCTaGGTTCTTGCTGACTGGGGATTTCATTGGCTTGGTCTTGAAGGG +
Preference number: 6 (lower is better)
Translates to: MEYPRVLVIVVKTVI*VLADWGFHWLGLEG
Trigger: CCCTTCAAGACCAAGCCAATGAAATCCCCAGTCAGCAAGAACCAAGATCACGGTCTTTACTACAATGACCAGCACCCTGGGGTACTCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp GTCTCCAGTCGATCTCGGAGATCTCTGTTGAAGTCATaGAGTCTCCTTATCTCGCCTTCGAGCTTGGTTCTC +
Preference number: 6 (lower is better)
Translates to: VSSRSRRSLLKS*SLLISPSSLVL
Trigger: GAGAACCAAGCTCGAAGGCGAGATAAGGAGACTTCATGACTTCAACAGAGATCTCCGAGATCGACTGGAGAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp TGTTGGCTGTCTCCAGTCGATCTCGGAGATCTCTGTTaGAGTCATGAAGTCTCCTTATCTCGCCTTCGAGCT +
Preference number: 6 (lower is better)
Translates to: CWLSPVDLGDLC*SHEVSLSRLRA
Trigger: AGCTCGAAGGCGAGATAAGGAGACTTCATGACTTCAACAGAGATCTCCGAGATCGACTGGAGACAGCCAACA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 72 bp TTGGCGGGCCGACTGATAGACCATTTGTGGATCTTCTaGAGTGAGGGTTTCCGTGGAAGAAAAGTTGGTGGT +
Preference number: 6 (lower is better)
Translates to: LAGRLIDHLWIF*SEGFRGRKVGG
Trigger: ACCACCAACTTTTCTTCCACGGAAACCCTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CAA 72 bp CCCAGGGTGCTGGTCATTGTAGTAAAGACCGTGATCTaGGTTCTTGCTGACTGGGGATTTCATTGGCTTGGT +
Preference number: 6 (lower is better)
Translates to: PRVLVIVVKTVI*VLADWGFHWLG
Trigger: ACCAAGCCAATGAAATCCCCAGTCAGCAAGAACCAAGATCACGGTCTTTACTACAATGACCAGCACCCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS TCA 72 bp TTGGCATGGAGGTTTTTAATAGTGTACTCCATGTCCTaGCACCTCCTGTTGGCCTGCACCACTTCTTCTTCC +
Preference number: 6 (lower is better)
Translates to: LAWRFLIVYSMS*HLLLACTTSSS
Trigger: GGAAGAAGAAGTGGTGCAGGCCAACAGGAGGTGTCAGGACATGGAGTACACTATTAAAAACCTCCATGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS GCA 72 bp CAAGAATTCTTTGTTCTGGGACACGTAATGGCTCTCTaGAGCTTTGTCTTCATGCCCATCGTATTCCCTGCT +
Preference number: 6 (lower is better)
Translates to: QEFFVLGHVMAL*SFVFMPIVFPA
Trigger: AGCAGGGAATACGATGGGCATGAAGACAAAGCTGCAGAGAGCCATTACGTGTCCCAGAACAAAGAATTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2
CDS CCA 72 bp ATTGTAGTAAAGACCGTGATCTTGGTTCTTGCTGACTaGGGATTTCATTGGCTTGGTCTTGAAGGGGTATTC +
Preference number: 6 (lower is better)
Translates to: IVVKTVILVLAD*GFHWLGLEGVF
Trigger: GAATACCCCTTCAAGACCAAGCCAATGAAATCCCCAGTCAGCAAGAACCAAGATCACGGTCTTTACTACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013220.8
ENSMUST00000223132.2