Pregenerated sensors for AMN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068250Ensembl transcript IDs: ENSMUST00000095319.10, ENSMUST00000111535.8, ENSMUST00000141346.2, ENSMUST00000156864.7
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAACTCCAAGACTTCTTGTaGACGATCTGTTATCAGGGG | + |
|
Preference number: 2 (lower is better) Translates to: INIYSANPVQGFEISLGKLQDFL*TICYQG Trigger: CCCCTGATAACAGATCGTTCACAAGAAGTCTTGGAG...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| 3UTR CAA 90 bp | TCGGTAAAGATCAATAAACAGACCAAGTCACTTGCTTTAGTTTTCTaGATCCTATTAATTGCTCCAAGACTTCTTGTGAACGATCTGTTA | + |
|
Preference number: 2 (lower is better) Translates to: SVKINKQTKSLALVF*ILLIAPRLLVNDLL Trigger: TAACAGATCGTTCACAAGAAGTCTTGGAGCAATTAATAGGATCAAGAAAACTAAAGCAAGTGACTTGGTCTGTTTATTGATCTTTACCGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| 3UTR GCA 72 bp | CAAGTCACTTGCTTTAGTTTTCTTGATCCTATTAATTaGTCCAAGACTTCTTGTGAACGATCTGTTATCAGG | + |
|
Preference number: 3 (lower is better) Translates to: QVTCFSFLDPIN*SKTSCERSVIR Trigger: CCTGATAACAGATCGTTCACAAGAAGTCTTGGAGCAATTAATAGGATCAAGAAAACTAAAGCAAGTGACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS-3UTR GCA 90 bp | GTCTACATTATGAGTTCTAAGACAGTCAGGGCTATACAGAGAAACCCTGTCTCGCTGCACTTACACAGGTaGTGGAGAGCCACATCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: VYIMSSKTVRAIQRNPVSLHLHR*WRATSE Trigger: CTCAGATGTGGCTCTCCAGCACCTGTGTAAGTGCAG...CGAGACAGGGTTTCTCTGTATAGCCCTGACTGTCTTAGAACTCATAATGTAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111535.8 |
||
| CDS-3UTR TCA 90 bp | ACGATCTGTTATCAGGGGGCAGCCATGGAAAAGAAGTATACATATCCGAGGACACTTTTCCTGCGTAGTTaGAATGTCAACACACTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: TICYQGAAMEKKYTYPRTLFLRS*NVNTLQ Trigger: CTGCAGTGTGTTGACATTTCAACTACGCAGGAAAAG...TGTCCTCGGATATGTATACTTCTTTTCCATGGCTGCCCCCTGATAACAGATCGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS-3UTR TCA 90 bp | GTCTACATTATGAGTTCTAAGACAGTCAGGGCTATACAGAGAAACCCTGTCTCGAGATACCTGCGTAGTTaGAATGTCAACACACTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VYIMSSKTVRAIQRNPVSRYLRS*NVNTLQ Trigger: CTGCAGTGTGTTGACATTTCAACTACGCAGGTATCT...CGAGACAGGGTTTCTCTGTATAGCCCTGACTGTCTTAGAACTCATAATGTAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111535.8 |
||
| CDS-3UTR GCA 90 bp | GTCTACATTATGAGTTCTAAGACAGTCAGGGCTATACAGAGAAACCCTGTCTCGCAGATGACAATTGAGTaGAAGAGCAAGGACTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: VYIMSSKTVRAIQRNPVSQMTIE*KSKDSF Trigger: GAAGGAGTCCTTGCTCTTGCACTCAATTGTCATCTG...CGAGACAGGGTTTCTCTGTATAGCCCTGACTGTCTTAGAACTCATAATGTAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111535.8 |
||
| CDS-3UTR GCA 90 bp | TACATATCCGAGGACATGCAGTCAGAGCAGCTTCTACAGCCTTATCAGTTAGATCAGATGACAATTGAGTaGAAGAGCAAGGACTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: YISEDMQSEQLLQPYQLDQMTIE*KSKDSF Trigger: GAAGGAGTCCTTGCTCTTGCACTCAATTGTCATCTG...ATCTAACTGATAAGGCTGTAGAAGCTGCTCTGACTGCATGTCCTCGGATATGTA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS-3UTR TCA 90 bp | GTCTACATTATGAGTTCTAAGACAGTCAGGGCTATACAGAGAAACCCTGTCTCGCTCAGATCTAGTCTTTaGACTTCAGGATGTAACACC | + |
|
Preference number: 4 (lower is better) Translates to: VYIMSSKTVRAIQRNPVSLRSSL*TSGCNT Trigger: GGTGTTACATCCTGAAGTTCAAAGACTAGATCTGAG...CGAGACAGGGTTTCTCTGTATAGCCCTGACTGTCTTAGAACTCATAATGTAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111535.8 |
||
| CDS-3UTR GCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAACTGCACTTACACAGGTaGTGGAGAGCCACATCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKLHLHR*WRATSE Trigger: CTCAGATGTGGCTCTCCAGCACCTGTGTAAGTGCAG...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR GCA 90 bp | GGGCAGCCATGGAAAAGAAGTATACATATCCGAGGACATGCAGTCAGAGCAGCTTTCCTTCTGAAGTTATaGTATTTCTATGTTCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GQPWKRSIHIRGHAVRAAFLLKL*YFYVLC Trigger: GCAGAGAACATAGAAATAGCATAACTTCAGAAGGAA...AGCTGCTCTGACTGCATGTCCTCGGATATGTATACTTCTTTTCCATGGCTGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS-3UTR GCA 90 bp | GTGAACGATCTGTTATCAGGGGGCAGCCATGGAAAAGAAGTATACATATCCGAGTGTTTTCTTGTTCCTTaGCCATCAATAATAGTACTC | + |
|
Preference number: 4 (lower is better) Translates to: VNDLLSGGSHGKEVYISECFLVP*PSIIVL Trigger: GAGTACTATTATTGATGGGCAAGGAACAAGAAAACA...CTCGGATATGTATACTTCTTTTCCATGGCTGCCCCCTGATAACAGATCGTTCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS-3UTR CCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAACACTTACACAGGTGCTaGAGAGCCACATCTGAGATA | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKHLHRC*RATSEI Trigger: TATCTCAGATGTGGCTCTCCAGCACCTGTGTAAGTG...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR TCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAAAGATACCTGCGTAGTTaGAATGTCAACACACTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKRYLRS*NVNTLQ Trigger: CTGCAGTGTGTTGACATTTCAACTACGCAGGTATCT...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR GCA 90 bp | GTCTACATTATGAGTTCTAAGACAGTCAGGGCTATACAGAGAAACCCTGTCTCGTTCCTTCTGAAGTTATaGTATTTCTATGTTCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: VYIMSSKTVRAIQRNPVSFLLKL*YFYVLC Trigger: GCAGAGAACATAGAAATAGCATAACTTCAGAAGGAA...CGAGACAGGGTTTCTCTGTATAGCCCTGACTGTCTTAGAACTCATAATGTAGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111535.8 |
||
| CDS-3UTR GCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAACAGATGACAATTGAGTaGAAGAGCAAGGACTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKQMTIE*KSKDSF Trigger: GAAGGAGTCCTTGCTCTTGCACTCAATTGTCATCTG...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 ENSMUST00000156864.7 |
||
| CDS-3UTR GCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAATGGTCCACTAACAAGTaGAACCACACCATTGTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKWSTNK*NHTIVR Trigger: TCTGACAATGGTGTGGTTGCACTTGTTAGTGGACCA...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR TCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAACTCAGATCTAGTCTTTaGACTTCAGGATGTAACACC | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKLRSSL*TSGCNT Trigger: GGTGTTACATCCTGAAGTTCAAAGACTAGATCTGAG...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR CCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAAACACCTCACTTATATTaGAATCTGTTATCCGACCCC | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKTPHLY*NLLSDP Trigger: GGGGTCGGATAACAGATTCCAATATAAGTGAGGTGT...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR CCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAAATCAGGGGGCAGCCATaGAAAAGAAGTATACATATC | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKIRGQP*KRSIHI Trigger: GATATGTATACTTCTTTTCCATGGCTGCCCCCTGAT...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR GCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAACCATTGTCAGATACCTaGGTAGTTGAAATGTCAACA | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKPLSDT*VVEMST Trigger: TGTTGACATTTCAACTACGCAGGTATCTGACAATGG...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR GCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAAACAGACCAAGTCACTTaGTTTAGTTTTCTTGATCCT | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKTDQVT*FSFLDP Trigger: AGGATCAAGAAAACTAAAGCAAGTGACTTGGTCTGT...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR GCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAATTCCTTCTGAAGTTATaGTATTTCTATGTTCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKFLLKL*YFYVLC Trigger: GCAGAGAACATAGAAATAGCATAACTTCAGAAGGAA...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 ENSMUST00000156864.7 |
||
| CDS-3UTR GCA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAAATAGTACTCTTTTCCTaGGTAGTTGAAATGTCAACA | + |
|
Preference number: 4 (lower is better) Translates to: INIYSANPVQGFEISLGKIVLFS*VVEMST Trigger: TGTTGACATTTCAACTACGCAGGAAAAGAGTACTAT...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS GCA 90 bp | CAGGATTTTAGATTTAGTGCCTTCAGTTTTCTGCACTTACACAGGTaGTGGAGAGCCACATCTGAGATATCACAGCTCCTCAGATCTAGT | + |
|
Preference number: 5 (lower is better) Translates to: QDFRFSAFSFLHLHR*WRATSEISQLLRSS Trigger: ACTAGATCTGAGGAGCTGTGATATCTCAGATGTGGCTCTCCAGCACCTGTGTAAGTGCAGAAAACTGAAGGCACTAAATCTAAAATCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 ENSMUST00000141346.2 |
||
| CDS TCA 90 bp | TCAGTAATACCTAAGCAGCCACCCAAATCAATGATCTTTAGCAGATaGCAATTGAGTGCAAGAGCAAGGACTCCTTCATCAGTGACACTG | + |
|
Preference number: 5 (lower is better) Translates to: SVIPKQPPKSMIFSR*QLSARARTPSSVTL Trigger: CAGTGTCACTGATGAAGGAGTCCTTGCTCTTGCACTCAATTGTCATCTGCTAAAGATCATTGATTTGGGTGGCTGCTTAGGTATTACTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 ENSMUST00000141346.2 ENSMUST00000156864.7 |
||
| CDS GCA 90 bp | TTCTATGTTCTCTGCAGGATTTTAGATTTAGTGCCTTCAGTTTTCTaGACTTACACAGGTGCTGGAGAGCCACATCTGAGATATCACAGC | + |
|
Preference number: 5 (lower is better) Translates to: FYVLCRILDLVPSVF*TYTGAGEPHLRYHS Trigger: GCTGTGATATCTCAGATGTGGCTCTCCAGCACCTGTGTAAGTGCAGAAAACTGAAGGCACTAAATCTAAAATCCTGCAGAGAACATAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 ENSMUST00000141346.2 |
||
| CDS-3UTR CAA 90 bp | GTCTACATTATGAGTTCTAAGACAGTCAGGGCTATACAGAGAAACCCTGTCTCGAACACCTCACTTATATaGGAATCTGTTATCCGACCC | + |
|
Preference number: 5 (lower is better) Translates to: VYIMSSKTVRAIQRNPVSNTSLI*ESVIRP Trigger: GGGTCGGATAACAGATTCCAATATAAGTGAGGTGTT...CGAGACAGGGTTTCTCTGTATAGCCCTGACTGTCTTAGAACTCATAATGTAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111535.8 |
||
| CDS-3UTR CAA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAAAGTGCAACCACACCATaGTCAGATACCTGCGTAGTT | + |
|
Preference number: 5 (lower is better) Translates to: INIYSANPVQGFEISLGKSATTP*SDTCVV Trigger: AACTACGCAGGTATCTGACAATGGTGTGGTTGCACT...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS GCA 90 bp | GGTCTGAACAGGATGAAGCCACAGCTTTTATTCCTTCTGAAGTTATaGTATTTCTATGTTCTCTGCAGGATTTTAGATTTAGTGCCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: GLNRMKPQLLFLLKL*YFYVLCRILDLVPS Trigger: TGAAGGCACTAAATCTAAAATCCTGCAGAGAACATAGAAATAGCATAACTTCAGAAGGAATAAAAGCTGTGGCTTCATCCTGTTCAGACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 ENSMUST00000141346.2 ENSMUST00000156864.7 |
||
| CDS-3UTR CAA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAAAACACCTCACTTATATaGGAATCTGTTATCCGACCC | + |
|
Preference number: 5 (lower is better) Translates to: INIYSANPVQGFEISLGKNTSLI*ESVIRP Trigger: GGGTCGGATAACAGATTCCAATATAAGTGAGGTGTT...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR CAA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAAATCTCCTCTAATTGTTaGGCACATGGTCCACTAACA | + |
|
Preference number: 5 (lower is better) Translates to: INIYSANPVQGFEISLGKISSNC*AHGPLT Trigger: TGTTAGTGGACCATGTGCCAAACAATTAGAGGAGAT...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS-3UTR CAA 90 bp | ATAAATATTTATAGCGCAAATCCTGTGCAAGGTTTTGAGATCAGCCTCGGTAAAACCAAGTGTACAAAGTaGTTTTCTTGTTCCTTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: INIYSANPVQGFEISLGKTKCTK*FSCSLP Trigger: GGGCAAGGAACAAGAAAACAACTTTGTACACTTGGT...TTTACCGAGGCTGATCTCAAAACCTTGCACAGGATTTGCGCTATAAATATTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS GCA 72 bp | AGATTTAGTGCCTTCAGTTTTCTGCACTTACACAGGTaGTGGAGAGCCACATCTGAGATATCACAGCTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: RFSAFSFLHLHR*WRATSEISQLL Trigger: GAGGAGCTGTGATATCTCAGATGTGGCTCTCCAGCACCTGTGTAAGTGCAGAAAACTGAAGGCACTAAATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 ENSMUST00000141346.2 |
||
| CDS CAA 72 bp | TTGGCACATGGTCCACTAACAAGTGCAACCACACCATaGTCAGATACCTGCGTAGTTGAAATGTCAACACAC | + |
|
Preference number: 6 (lower is better) Translates to: LAHGPLTSATTP*SDTCVVEMSTH Trigger: GTGTGTTGACATTTCAACTACGCAGGTATCTGACAATGGTGTGGTTGCACTTGTTAGTGGACCATGTGCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS CAA 90 bp | TCTAATTGTTTGGCACATGGTCCACTAACAAGTGCAACCACACCATaGTCAGATACCTGCGTAGTTGAAATGTCAACACACTGCAGAAAT | + |
|
Preference number: 6 (lower is better) Translates to: SNCLAHGPLTSATTP*SDTCVVEMSTHCRN Trigger: ATTTCTGCAGTGTGTTGACATTTCAACTACGCAGGTATCTGACAATGGTGTGGTTGCACTTGTTAGTGGACCATGTGCCAAACAATTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS GCA 72 bp | CTTGTTCCTTGCCCATCAATAATAGTACTCTTTTCCTaGGTAGTTGAAATGTCAACACACTGCAGAAATGGG | + |
|
Preference number: 6 (lower is better) Translates to: LVPCPSIIVLFS*VVEMSTHCRNG Trigger: CCCATTTCTGCAGTGTGTTGACATTTCAACTACGCAGGAAAAGAGTACTATTATTGATGGGCAAGGAACAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS TCA 72 bp | ACATCTGAGATATCACAGCTCCTCAGATCTAGTCTTTaGACTTCAGGATGTAACACCTCACTTATATTGGAA | + |
|
Preference number: 6 (lower is better) Translates to: TSEISQLLRSSL*TSGCNTSLILE Trigger: TTCCAATATAAGTGAGGTGTTACATCCTGAAGTTCAAAGACTAGATCTGAGGAGCTGTGATATCTCAGATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 ENSMUST00000141346.2 |
||
| CDS TCA 72 bp | TTGCCCATCAATAATAGTACTCTTTTCCTGCGTAGTTaGAATGTCAACACACTGCAGAAATGGGCAGTTTTT | + |
|
Preference number: 6 (lower is better) Translates to: LPINNSTLFLRS*NVNTLQKWAVF Trigger: AAAAACTGCCCATTTCTGCAGTGTGTTGACATTTCAACTACGCAGGAAAAGAGTACTATTATTGATGGGCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS CAA 72 bp | TTTATACAGTATCTCATGTTAATCTCCTCTAATTGTTaGGCACATGGTCCACTAACAAGTGCAACCACACCA | + |
|
Preference number: 6 (lower is better) Translates to: FIQYLMLISSNC*AHGPLTSATTP Trigger: TGGTGTGGTTGCACTTGTTAGTGGACCATGTGCCAAACAATTAGAGGAGATTAACATGAGATACTGTATAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||
| CDS CAA 72 bp | TCATGTAAAGGTGGGAGGAGAACCAAGTGTACAAAGTaGTTTTCTTGTTCCTTGCCCATCAATAATAGTACT | + |
|
Preference number: 6 (lower is better) Translates to: SCKGGRRTKCTK*FSCSLPINNST Trigger: AGTACTATTATTGATGGGCAAGGAACAAGAAAACAACTTTGTACACTTGGTTCTCCTCCCACCTTTACATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156864.7 |
||
| CDS CAA 90 bp | TCAGTTAGATTTATACAGTATCTCATGTTAATCTCCTCTAATTGTTaGGCACATGGTCCACTAACAAGTGCAACCACACCATTGTCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: SVRFIQYLMLISSNC*AHGPLTSATTPLSD Trigger: ATCTGACAATGGTGTGGTTGCACTTGTTAGTGGACCATGTGCCAAACAATTAGAGGAGATTAACATGAGATACTGTATAAATCTAACTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095319.10 ENSMUST00000111535.8 |
||